AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1256270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1256270 MtrunA17_Chr4g0053191 100.000 159 0 0 1 159 1 159 2.45e-120 335
Msa1256270 MtrunA17_Chr5g0401831 89.937 159 16 0 1 159 1 159 2.31e-110 310
Msa1256270 MtrunA17_Chr8g0362321 42.208 154 82 2 1 154 1 147 2.58e-38 127
Msa1256270 MtrunA17_Chr4g0060351 42.208 154 82 2 1 154 1 147 6.44e-38 127
Msa1256270 MtrunA17_Chr1g0154011 38.158 152 87 2 4 155 1 145 9.72e-31 108
Msa1256270 MtrunA17_Chr3g0108261 36.842 152 89 2 4 155 1 145 1.78e-30 107
Msa1256270 MtrunA17_Chr5g0432831 36.184 152 90 2 4 155 1 145 9.07e-30 105
Msa1256270 MtrunA17_Chr7g0275361 36.184 152 90 2 4 155 1 145 1.61e-29 105
Msa1256270 MtrunA17_Chr8g0369311 37.500 152 88 3 4 155 57 201 2.97e-29 106
Msa1256270 MtrunA17_Chr4g0037011 34.868 152 92 2 4 155 1 145 1.39e-27 100
Msa1256270 MtrunA17_Chr4g0038891 36.620 142 82 3 8 149 36 169 1.05e-21 86.3
Msa1256270 MtrunA17_Chr1g0199951 40.000 115 66 2 37 151 70 181 1.75e-21 85.9
Msa1256270 MtrunA17_Chr5g0396451 35.915 142 83 3 8 149 36 169 4.41e-21 84.7
Msa1256270 MtrunA17_Chr4g0031181 33.333 123 71 1 37 148 33 155 8.59e-21 83.6
Msa1256270 MtrunA17_Chr2g0328001 34.959 123 69 1 37 148 33 155 1.68e-20 82.8
Msa1256270 MtrunA17_Chr8g0378601 37.963 108 65 1 37 144 50 155 6.78e-20 81.3
Msa1256270 MtrunA17_Chr3g0131871 32.639 144 90 4 7 149 5 142 1.06e-19 81.3
Msa1256270 MtrunA17_Chr2g0316201 37.374 99 60 1 30 128 26 122 3.84e-19 79.0
Msa1256270 MtrunA17_Chr2g0316211 37.374 99 60 1 30 128 26 122 6.42e-19 78.2
Msa1256270 MtrunA17_Chr7g0254701 35.849 106 66 1 45 150 46 149 6.72e-18 78.2
Msa1256270 MtrunA17_Chr3g0139901 30.719 153 95 6 5 153 4 149 2.98e-16 71.6
Msa1256270 MtrunA17_Chr8g0376111 37.302 126 66 6 8 125 44 164 7.97e-15 70.5
Msa1256270 MtrunA17_Chr7g0233631 34.921 126 69 5 8 125 39 159 5.82e-14 67.8
Msa1256270 MtrunA17_Chr5g0403591 29.915 117 79 2 33 149 53 166 1.70e-13 64.7
Msa1256270 MtrunA17_Chr8g0348701 29.771 131 85 4 27 155 21 146 5.64e-13 63.5
Msa1256270 MtrunA17_Chr8g0372391 34.513 113 65 3 1 112 12 116 2.06e-12 61.6
Msa1256270 MtrunA17_Chr4g0059291 29.457 129 84 4 29 155 23 146 3.33e-12 61.2
Msa1256270 MtrunA17_Chr5g0404931 33.628 113 66 3 1 112 12 116 4.27e-12 60.5
Msa1256270 MtrunA17_Chr8g0387131 28.829 111 75 3 47 155 38 146 5.80e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1256270 AT3G57870.1 88.608 158 18 0 2 159 3 160 1.29e-108 306
Msa1256270 AT2G02760.1 42.208 154 82 2 1 154 1 147 5.44e-38 127
Msa1256270 AT2G02760.2 42.208 154 82 2 1 154 1 147 5.44e-38 127
Msa1256270 AT2G02760.4 42.208 154 82 2 1 154 1 147 5.44e-38 127
Msa1256270 AT2G02760.3 42.208 154 82 2 1 154 1 147 5.44e-38 127
Msa1256270 AT1G14400.1 41.558 154 83 2 1 154 1 147 2.08e-37 125
Msa1256270 AT1G14400.2 41.558 154 83 2 1 154 1 147 2.08e-37 125
Msa1256270 AT5G62540.1 41.892 148 79 2 1 148 1 141 5.13e-35 119
Msa1256270 AT4G27960.1 36.184 152 90 2 4 155 1 145 4.62e-30 107
Msa1256270 AT1G64230.2 36.842 152 89 2 4 155 1 145 4.82e-30 107
Msa1256270 AT1G64230.1 36.842 152 89 2 4 155 1 145 4.82e-30 107
Msa1256270 AT5G41700.4 36.842 152 90 2 4 155 1 146 6.72e-30 106
Msa1256270 AT5G41700.5 36.842 152 89 2 4 155 1 145 7.28e-30 106
Msa1256270 AT5G41700.2 36.842 152 89 2 4 155 1 145 7.28e-30 106
Msa1256270 AT5G41700.1 36.842 152 89 2 4 155 1 145 7.28e-30 106
Msa1256270 AT5G53300.2 36.184 152 90 2 4 155 1 145 1.32e-29 105
Msa1256270 AT5G53300.4 36.184 152 90 2 4 155 1 145 1.32e-29 105
Msa1256270 AT5G53300.1 36.184 152 90 2 4 155 1 145 1.32e-29 105
Msa1256270 AT1G64230.3 35.897 156 94 2 4 155 1 154 1.64e-29 105
Msa1256270 AT4G27960.2 36.184 152 90 2 4 155 31 175 2.12e-29 106
Msa1256270 AT3G08690.2 34.868 152 92 2 4 155 1 145 9.59e-29 103
Msa1256270 AT3G08690.1 34.868 152 92 2 4 155 1 145 9.59e-29 103
Msa1256270 AT5G56150.1 36.184 152 90 3 4 155 1 145 4.56e-28 102
Msa1256270 AT2G16740.1 36.184 152 90 3 4 155 1 145 2.21e-27 100
Msa1256270 AT1G64230.5 41.739 115 65 1 41 155 75 187 2.96e-27 101
Msa1256270 AT1G64230.4 41.739 115 65 1 41 155 75 187 2.96e-27 101
Msa1256270 AT3G08700.2 34.211 152 94 2 4 155 1 146 1.18e-26 98.6
Msa1256270 AT3G08700.1 34.211 152 94 2 4 155 1 146 1.18e-26 98.6
Msa1256270 AT1G50490.1 42.478 113 62 2 37 149 63 172 4.42e-23 90.1
Msa1256270 AT1G36340.2 38.333 120 72 1 30 149 28 145 6.85e-22 86.3
Msa1256270 AT1G36340.1 38.333 120 72 1 30 149 28 145 6.85e-22 86.3
Msa1256270 AT3G20060.2 40.708 113 64 2 37 149 19 128 8.93e-22 85.5
Msa1256270 AT3G20060.1 37.324 142 81 3 8 149 40 173 1.33e-21 86.3
Msa1256270 AT3G46460.1 36.585 123 67 2 37 148 33 155 1.98e-21 85.5
Msa1256270 AT5G59300.1 35.772 123 68 2 37 148 33 155 2.59e-20 82.8
Msa1256270 AT5G41700.3 38.596 114 63 3 4 117 1 107 1.01e-19 80.5
Msa1256270 AT5G50870.1 36.641 131 69 4 35 153 29 157 2.34e-19 80.9
Msa1256270 AT3G55380.1 33.333 123 71 1 37 148 34 156 2.34e-19 80.1
Msa1256270 AT1G16890.2 37.374 99 60 1 30 128 26 122 3.69e-19 79.3
Msa1256270 AT5G50870.2 45.263 95 49 2 35 128 29 121 3.92e-19 80.5
Msa1256270 AT1G78870.2 37.374 99 60 1 30 128 26 122 6.10e-19 78.6
Msa1256270 AT1G16890.3 37.374 99 60 1 30 128 35 131 6.40e-19 79.0
Msa1256270 AT5G53300.3 36.697 109 62 2 4 112 1 102 7.97e-19 77.0
Msa1256270 AT5G56150.2 37.273 110 62 3 4 113 1 103 1.33e-18 76.6
Msa1256270 AT1G16890.1 39.773 88 51 1 41 128 4 89 3.17e-18 75.9
Msa1256270 AT3G46460.3 36.792 106 56 2 54 148 8 113 3.18e-18 76.3
Msa1256270 AT3G46460.2 36.792 106 56 2 54 148 8 113 3.18e-18 76.3
Msa1256270 AT1G78870.4 39.773 88 51 1 41 128 4 89 4.01e-18 75.9
Msa1256270 AT3G13550.1 38.462 104 62 1 37 140 64 165 1.00e-17 76.3
Msa1256270 AT5G05080.2 33.962 106 68 1 45 150 46 149 1.83e-17 77.0
Msa1256270 AT5G05080.3 33.962 106 68 1 45 150 46 149 1.83e-17 77.0
Msa1256270 AT5G05080.1 33.962 106 68 1 45 150 46 149 1.83e-17 77.0
Msa1256270 AT5G05080.4 33.962 106 68 1 45 150 46 149 1.83e-17 77.0
Msa1256270 AT5G25760.1 32.593 135 83 4 5 137 4 132 1.62e-16 72.4
Msa1256270 AT5G25760.2 32.593 135 83 4 5 137 4 132 1.62e-16 72.4
Msa1256270 AT1G78870.1 39.326 89 51 2 41 128 4 90 2.08e-16 71.2
Msa1256270 AT3G13550.2 40.449 89 51 1 37 125 64 150 1.27e-15 70.5
Msa1256270 AT3G24515.1 28.481 158 105 4 8 158 10 166 3.11e-15 72.0
Msa1256270 AT2G18600.1 30.769 117 78 2 33 149 55 168 2.95e-14 67.4
Msa1256270 AT2G18600.2 30.769 117 78 2 33 149 55 168 2.95e-14 67.4
Msa1256270 AT2G46030.5 29.752 121 81 3 37 155 28 146 4.32e-14 66.6
Msa1256270 AT2G46030.1 29.752 121 81 3 37 155 28 146 4.32e-14 66.6
Msa1256270 AT2G46030.4 29.752 121 81 3 37 155 31 149 6.17e-14 66.2
Msa1256270 AT2G46030.2 29.752 121 81 3 37 155 31 149 6.17e-14 66.2
Msa1256270 AT2G46030.3 29.771 131 85 4 27 155 93 218 9.02e-14 67.0
Msa1256270 AT3G24515.3 29.310 116 80 1 45 158 76 191 9.27e-14 68.2
Msa1256270 AT4G36800.2 29.915 117 79 2 33 149 54 167 1.26e-13 65.5
Msa1256270 AT4G36800.1 29.915 117 79 2 33 149 54 167 1.26e-13 65.5
Msa1256270 AT3G55380.2 26.115 157 71 1 37 148 34 190 4.95e-13 64.3
Msa1256270 AT5G41340.1 29.771 131 85 4 27 155 21 146 6.68e-13 63.5
Msa1256270 AT1G78870.3 32.941 85 55 1 30 114 26 108 7.55e-13 61.6
Msa1256270 AT1G63800.1 29.771 131 85 4 27 155 21 146 1.52e-12 62.8
Msa1256270 AT1G63800.2 29.771 131 85 4 27 155 6 131 1.52e-12 62.4
Msa1256270 AT1G75440.1 34.513 113 65 3 1 112 12 116 2.58e-12 61.6
Msa1256270 AT5G42990.1 32.743 113 67 3 1 112 12 116 2.81e-12 61.6
Msa1256270 AT5G41340.2 31.429 105 68 3 53 155 9 111 4.83e-12 60.8
Msa1256270 AT1G45050.1 33.628 113 66 3 1 112 12 116 6.55e-12 60.5
Msa1256270 AT4G36410.1 30.973 113 69 3 1 112 12 116 9.51e-11 57.4

Find 73 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAGGAACTTCTCATTTC+TGG 0.105740 8_2:-56085119 Msa1256270:three_prime_UTR
GTGCGACGTTAATTGATTTC+TGG 0.191842 8_2:-56084979 Msa1256270:three_prime_UTR
CAGTAATTATCCAATCATTT+AGG 0.256095 8_2:+56085161 None:intergenic
AAGAATTTGCTTCACTGTTA+TGG 0.268750 8_2:+56085910 None:intergenic
ATTTGGCATTGTACTATTCC+TGG 0.294593 8_2:-56090134 Msa1256270:CDS
TATATGCTTGATATAGAAAA+AGG 0.318859 8_2:+56085085 None:intergenic
TTACTAAATTCCTAAATGAT+TGG 0.320105 8_2:-56085171 Msa1256270:three_prime_UTR
GTTCTGTGAATTTGATGATT+TGG 0.321106 8_2:-56090151 Msa1256270:CDS
TCAAGAAACTGTTGTTAGTA+TGG 0.321586 8_2:-56085380 Msa1256270:three_prime_UTR
TTTCAAGCATATACCCCTAT+TGG 0.337686 8_2:-56085034 Msa1256270:intron
AACTGTTTCGTTGTGATCAT+TGG 0.339649 8_2:-56085330 Msa1256270:three_prime_UTR
TGGGCGGGATCAGCAGGATT+TGG 0.353056 8_2:+56085860 None:intergenic
GGAATTTAGTAACAAACATT+AGG 0.354772 8_2:+56085182 None:intergenic
ATAGTAATAGCTGGCCAATA+GGG 0.357597 8_2:+56085020 None:intergenic
AATAGTAATAGCTGGCCAAT+AGG 0.372138 8_2:+56085019 None:intergenic
GTCATTTGCTGCAGACTGAT+TGG 0.380732 8_2:-56086194 Msa1256270:intron
GAACCATCAGCTGCTGTCTC+TGG 0.392310 8_2:+56090170 None:intergenic
GTTCCTGATGGGTAAACATT+GGG 0.404642 8_2:+56086081 None:intergenic
CACCCCAATGTTTACCCATC+AGG 0.416855 8_2:-56086084 Msa1256270:CDS
TGTACTATTCCTGGAAAAGC+TGG 0.421831 8_2:-56090125 Msa1256270:CDS
TCTGTCTGGGCGGGATCAGC+AGG 0.425131 8_2:+56085854 None:intergenic
TAAGAGAAGGGTCCGGCTAC+AGG 0.434424 8_2:-56085446 Msa1256270:CDS
GTCAACCAATGAATACTTGT+TGG 0.448552 8_2:-56085220 Msa1256270:three_prime_UTR
CGAAACACAACAACCATGTC+TGG 0.449201 8_2:-56090341 Msa1256270:exon
TAATAGCACTAGACAATACT+TGG 0.451883 8_2:+56085412 None:intergenic
TCTCACCAACAAGTATTCAT+TGG 0.456650 8_2:+56085215 None:intergenic
TCATTTGCTGCAGACTGATT+GGG 0.457267 8_2:-56086193 Msa1256270:intron
GGTACTGCTTTGCCTGTAGC+CGG 0.457858 8_2:+56085434 None:intergenic
CGGGATCAGCAGGATTTGGC+TGG 0.473423 8_2:+56085864 None:intergenic
ATTTGCTTCACTGTTATGGC+TGG 0.475168 8_2:+56085914 None:intergenic
ACAGATGATAGCCTTCTGTC+TGG 0.488538 8_2:+56085840 None:intergenic
TCACTGAAATGTAATGTAAG+TGG 0.494137 8_2:+56086156 None:intergenic
GTACTATTCCTGGAAAAGCT+GGG 0.509629 8_2:-56090124 Msa1256270:CDS
TGATGATAAAATTAAATGTA+CGG 0.514757 8_2:+56090520 None:intergenic
CTGCAGACTGATTGGGAGGG+TGG 0.516809 8_2:-56086186 Msa1256270:intron
ATTGGGGTGGAAGAAACCTT+GGG 0.521013 8_2:+56086098 None:intergenic
AGGCTATCATCTGTTTATCC+AGG 0.528854 8_2:-56085831 Msa1256270:intron
CACTGAAATGTAATGTAAGT+GGG 0.533371 8_2:+56086157 None:intergenic
TGAATTATGACTTCTCTCTC+AGG 0.535352 8_2:-56085135 Msa1256270:three_prime_UTR
AACAGTGAAGCAAATTCTTG+TGG 0.538738 8_2:-56085906 Msa1256270:CDS
CATTGGGGTGGAAGAAACCT+TGG 0.546367 8_2:+56086097 None:intergenic
ACAGTGAAGCAAATTCTTGT+GGG 0.546550 8_2:-56085905 Msa1256270:CDS
GACAAGCAAACAGTTCCTGA+TGG 0.551868 8_2:+56086069 None:intergenic
TGATAGCCTTCTGTCTGGGC+GGG 0.552713 8_2:+56085845 None:intergenic
AGTTCCTGATGGGTAAACAT+TGG 0.555673 8_2:+56086080 None:intergenic
TTTCATTTCATTTCCCCACA+AGG 0.559038 8_2:-56090461 Msa1256270:five_prime_UTR
GCTGATCCCGCCCAGACAGA+AGG 0.566450 8_2:-56085851 Msa1256270:CDS
ACAAGCAAACAGTTCCTGAT+GGG 0.585557 8_2:+56086070 None:intergenic
CAGATGATAGCCTTCTGTCT+GGG 0.588972 8_2:+56085841 None:intergenic
TAGTAATAGCTGGCCAATAG+GGG 0.593025 8_2:+56085021 None:intergenic
TACTATTCCTGGAAAAGCTG+GGG 0.596134 8_2:-56090123 Msa1256270:intron
ATACCACAGAGTATAAGAGA+AGG 0.605787 8_2:-56085459 Msa1256270:CDS
CAGAGTATAAGAGAAGGGTC+CGG 0.605915 8_2:-56085453 Msa1256270:CDS
AAACCAGAGACAGCAGCTGA+TGG 0.609078 8_2:-56090173 Msa1256270:CDS
TTTGCTGCAGACTGATTGGG+AGG 0.609106 8_2:-56086190 Msa1256270:intron
TACCACAGAGTATAAGAGAA+GGG 0.610766 8_2:-56085458 Msa1256270:CDS
TGTCTGGTATTGCTCGTGGT+CGG 0.620939 8_2:-56090325 Msa1256270:CDS
TTGCTGCAGACTGATTGGGA+GGG 0.631895 8_2:-56086189 Msa1256270:intron
ATGATAGCCTTCTGTCTGGG+CGG 0.641312 8_2:+56085844 None:intergenic
CTGATGGGTAAACATTGGGG+TGG 0.642707 8_2:+56086085 None:intergenic
ACCATGTCTGGTATTGCTCG+TGG 0.642932 8_2:-56090329 Msa1256270:CDS
TCACTGAGGAACGGAAATCG+TGG 0.651418 8_2:-56090301 Msa1256270:CDS
ACCACGAGCAATACCAGACA+TGG 0.657443 8_2:+56090328 None:intergenic
TTCCTGATGGGTAAACATTG+GGG 0.660864 8_2:+56086082 None:intergenic
GTGGTCGGCTCACTGAGGAA+CGG 0.667700 8_2:-56090310 Msa1256270:CDS
AATAGCACTAGACAATACTT+GGG 0.667894 8_2:+56085413 None:intergenic
GACCCTTCTCTTATACTCTG+TGG 0.668386 8_2:+56085456 None:intergenic
AGCATGAATAGTGAAAACAT+TGG 0.685925 8_2:+56085288 None:intergenic
TGCTCGTGGTCGGCTCACTG+AGG 0.694537 8_2:-56090315 Msa1256270:CDS
AAATGAAATGAAATGAACGA+AGG 0.712379 8_2:+56090476 None:intergenic
TTGGGGTGGAAGAAACCTTG+GGG 0.713698 8_2:+56086099 None:intergenic
CTGAGGAACGGAAATCGTGG+CGG 0.716867 8_2:-56090298 Msa1256270:CDS
TGGGGTGGAAGAAACCTTGG+GGG 0.732940 8_2:+56086100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATAAAACTCAAATTT+TGG - chr8_2:56087691-56087710 Msa1256270:intron 10.0%
!! TGATGATAAAATTAAATGTA+CGG + chr8_2:56085003-56085022 None:intergenic 15.0%
!! TAAGTATTCATATTGAATAA+CGG + chr8_2:56086280-56086299 None:intergenic 15.0%
!!! AAAATATATATTGGCAATTT+TGG - chr8_2:56086621-56086640 Msa1256270:intron 15.0%
!! CATAATTAATATAAGTAAAG+AGG + chr8_2:56086759-56086778 None:intergenic 15.0%
!! TTTACTACATTTAATCTATA+AGG + chr8_2:56086924-56086943 None:intergenic 15.0%
!! TTAAATGTAGTAAATGTAAA+AGG - chr8_2:56086930-56086949 Msa1256270:intron 15.0%
!!! GATTTCTTGTTTTTTTTTTT+TGG - chr8_2:56087575-56087594 Msa1256270:intron 15.0%
!!! TGTTCAAAATTTGTTTTTTA+GGG - chr8_2:56088052-56088071 Msa1256270:intron 15.0%
!!! TTTTTTTTTCCTCTTTTTTT+CGG - chr8_2:56088855-56088874 Msa1256270:intron 15.0%
!!! ATTGTTTATTTTGTAAATTG+TGG + chr8_2:56089021-56089040 None:intergenic 15.0%
!! ATTATTATGATGTAAATTAG+AGG + chr8_2:56089301-56089320 None:intergenic 15.0%
!!! AATTGATAAATGAATTCTTT+TGG - chr8_2:56089713-56089732 Msa1256270:intron 15.0%
!!! ATTGATAAATGAATTCTTTT+GGG - chr8_2:56089714-56089733 Msa1256270:intron 15.0%
!!! TTTTTTGTTTGTTGTGATTT+AGG - chr8_2:56085313-56085332 Msa1256270:three_prime_UTR 20.0%
!!! TTTTTGTTTGTTGTGATTTA+GGG - chr8_2:56085314-56085333 Msa1256270:three_prime_UTR 20.0%
!! ATAATTTGAGAAAATGTAAG+TGG - chr8_2:56085621-56085640 Msa1256270:intron 20.0%
!!! AATTTGCTTTATAAGTTAGT+TGG - chr8_2:56085791-56085810 Msa1256270:intron 20.0%
!!! CTTTATTTTATCTTGAGTTA+TGG + chr8_2:56085943-56085962 None:intergenic 20.0%
!! CAAGATAAAATAAAGTTAAG+CGG - chr8_2:56085948-56085967 Msa1256270:intron 20.0%
!!! CTTCTTAAATAAGTTGAAAA+TGG - chr8_2:56085983-56086002 Msa1256270:intron 20.0%
!!! AAACCTTTGTTATGAAATTT+AGG + chr8_2:56086139-56086158 None:intergenic 20.0%
!! AACAATGATATTTGATATTG+TGG - chr8_2:56086164-56086183 Msa1256270:CDS 20.0%
!!! GTTAAACATTTTTAATGATC+TGG - chr8_2:56086388-56086407 Msa1256270:intron 20.0%
!! GATAAGTATGAAAAATAAGT+CGG + chr8_2:56086542-56086561 None:intergenic 20.0%
!! TTAGAACATAAAAAACTAAC+AGG + chr8_2:56086990-56087009 None:intergenic 20.0%
!! AAAAAACAAGAAATCTCAAA+TGG + chr8_2:56087570-56087589 None:intergenic 20.0%
!!! TTTTTTTTTTTGGACAAAAG+TGG - chr8_2:56087585-56087604 Msa1256270:intron 20.0%
!!! GTGTTCAAAATTTGTTTTTT+AGG - chr8_2:56088051-56088070 Msa1256270:intron 20.0%
!! ACTTACCAATAATTCTTTAT+TGG + chr8_2:56088327-56088346 None:intergenic 20.0%
!! AAGAGGAAAAAAAAACATTA+GGG + chr8_2:56088850-56088869 None:intergenic 20.0%
!! AAAGAGGAAAAAAAAACATT+AGG + chr8_2:56088851-56088870 None:intergenic 20.0%
!! TTGTAAATTGTGGTATTAAT+GGG + chr8_2:56089011-56089030 None:intergenic 20.0%
!! TTTGTAAATTGTGGTATTAA+TGG + chr8_2:56089012-56089031 None:intergenic 20.0%
!! AATAAAGTATATGTAAACCA+GGG - chr8_2:56089067-56089086 Msa1256270:intron 20.0%
!! ATTCTAAACCAGATAAAAAA+CGG + chr8_2:56089771-56089790 None:intergenic 20.0%
!! TTACTAAATTCCTAAATGAT+TGG - chr8_2:56090349-56090368 Msa1256270:five_prime_UTR 20.0%
!! TATATGCTTGATATAGAAAA+AGG + chr8_2:56090438-56090457 None:intergenic 20.0%
!! TGAAAAAAAATAGTAATAGC+TGG + chr8_2:56090471-56090490 None:intergenic 20.0%
!! TTTGAAAAAATAGTAATAGC+TGG + chr8_2:56090512-56090531 None:intergenic 20.0%
! AAATGAAATGAAATGAACGA+AGG + chr8_2:56085047-56085066 None:intergenic 25.0%
!!! TTTTTGTTTGTGCGAAAATT+TGG - chr8_2:56085501-56085520 Msa1256270:intron 25.0%
!!! TTTTGTTTGTGCGAAAATTT+GGG - chr8_2:56085502-56085521 Msa1256270:intron 25.0%
!!! TAGATTTTTTTACTTGTGTC+TGG - chr8_2:56085542-56085561 Msa1256270:intron 25.0%
!!! AGATTTTTTTACTTGTGTCT+GGG - chr8_2:56085543-56085562 Msa1256270:intron 25.0%
!! AACATTATTTAGAGCTTGTT+TGG + chr8_2:56086098-56086117 None:intergenic 25.0%
! ACTCCTAAATTTCATAACAA+AGG - chr8_2:56086133-56086152 Msa1256270:CDS 25.0%
!! GGAGAATTGTTTTCAAATTT+AGG - chr8_2:56086185-56086204 Msa1256270:intron 25.0%
! ATCATAACCAATCAAATGAA+TGG - chr8_2:56086353-56086372 Msa1256270:intron 25.0%
!! AAACATTTTTAATGATCTGG+TGG - chr8_2:56086391-56086410 Msa1256270:intron 25.0%
! AATATAAGTAAAGAGGCAAA+AGG + chr8_2:56086752-56086771 None:intergenic 25.0%
!! TTTTAATGTCTTGAGAATAG+AGG - chr8_2:56086828-56086847 Msa1256270:intron 25.0%
! TTTAATGTCTTGAGAATAGA+GGG - chr8_2:56086829-56086848 Msa1256270:intron 25.0%
! TGCAATTTCTAATTTCTTAG+TGG + chr8_2:56087378-56087397 None:intergenic 25.0%
! AATCTCAAATGGACAAATTT+AGG + chr8_2:56087559-56087578 None:intergenic 25.0%
! AACAACTAAGATTCATATCA+GGG - chr8_2:56087761-56087780 Msa1256270:intron 25.0%
! TTAGGAATATTTATGGTGAT+TGG - chr8_2:56088502-56088521 Msa1256270:intron 25.0%
! AATATTTATGGTGATTGGAT+AGG - chr8_2:56088507-56088526 Msa1256270:intron 25.0%
! TTCAATCATATTAGACAAAC+AGG + chr8_2:56088666-56088685 None:intergenic 25.0%
! TGTAAATTGTGGTATTAATG+GGG + chr8_2:56089010-56089029 None:intergenic 25.0%
!! TATTTGCAAATGAAGTTTTC+TGG - chr8_2:56089040-56089059 Msa1256270:intron 25.0%
! GAATAAAGTATATGTAAACC+AGG - chr8_2:56089066-56089085 Msa1256270:intron 25.0%
! TGTTAAATACCAACTTCTTT+GGG - chr8_2:56089124-56089143 Msa1256270:intron 25.0%
! ATAAAAAAACCCAAAGAAGT+TGG + chr8_2:56089136-56089155 None:intergenic 25.0%
! ATTCTAAGCAAACTGATTAT+AGG - chr8_2:56089557-56089576 Msa1256270:intron 25.0%
! GAATTCATTTATCAATTACC+TGG + chr8_2:56089710-56089729 None:intergenic 25.0%
!!! TTTTATCTGGTTTAGAATCA+AGG - chr8_2:56089773-56089792 Msa1256270:intron 25.0%
! ATCCTAATATCAACAATCAT+CGG + chr8_2:56089860-56089879 None:intergenic 25.0%
!! TCTTCAATAGTCTTTGAAAA+TGG - chr8_2:56089895-56089914 Msa1256270:intron 25.0%
! GGAATTTAGTAACAAACATT+AGG + chr8_2:56090341-56090360 None:intergenic 25.0%
! CAGTAATTATCCAATCATTT+AGG + chr8_2:56090362-56090381 None:intergenic 25.0%
! TTTGTTCTCTTTTTCCTTGT+GGG + chr8_2:56085076-56085095 None:intergenic 30.0%
! GTTCTGTGAATTTGATGATT+TGG - chr8_2:56085369-56085388 Msa1256270:three_prime_UTR 30.0%
!!! GATTTTTTTACTTGTGTCTG+GGG - chr8_2:56085544-56085563 Msa1256270:intron 30.0%
TGAATGTAACCATATATGTG+TGG - chr8_2:56085645-56085664 Msa1256270:intron 30.0%
AACACACATGAAACAAAAAG+AGG + chr8_2:56085730-56085749 None:intergenic 30.0%
TAATGTATTGTATGCATCCA+TGG - chr8_2:56085821-56085840 Msa1256270:intron 30.0%
AAGAGTTTACCATCCAAATA+AGG - chr8_2:56085853-56085872 Msa1256270:CDS 30.0%
TATCCAAACATGACCTTATT+TGG + chr8_2:56085869-56085888 None:intergenic 30.0%
! AAACACTTTTGACACTGTTT+GGG + chr8_2:56086045-56086064 None:intergenic 30.0%
! TAAACACTTTTGACACTGTT+TGG + chr8_2:56086046-56086065 None:intergenic 30.0%
GTCAGTAGATATGCTTAAAT+AGG - chr8_2:56086067-56086086 Msa1256270:CDS 30.0%
ATGGTGATTAATAGTGAACA+GGG + chr8_2:56086236-56086255 None:intergenic 30.0%
! GCTTACACTTTTAGTGTATA+AGG - chr8_2:56086313-56086332 Msa1256270:intron 30.0%
ACTACTTCCATTCATTTGAT+TGG + chr8_2:56086363-56086382 None:intergenic 30.0%
TTAATGTCTTGAGAATAGAG+GGG - chr8_2:56086830-56086849 Msa1256270:intron 30.0%
CTACATTTAATCTATAAGGC+TGG + chr8_2:56086920-56086939 None:intergenic 30.0%
TATAATGCTAACAGGGAAAA+TGG + chr8_2:56087013-56087032 None:intergenic 30.0%
! GGGCTTTTACAATTATCAAA+TGG - chr8_2:56087066-56087085 Msa1256270:intron 30.0%
GTGTTAAATAGCAGTAATAG+TGG - chr8_2:56087162-56087181 Msa1256270:intron 30.0%
ATCAACAAGAATAGAGCATA+TGG + chr8_2:56087417-56087436 None:intergenic 30.0%
TCTCTTTATTAGAGAACAGT+CGG - chr8_2:56087513-56087532 Msa1256270:intron 30.0%
GATATGAATCTTAGTTGTTG+AGG + chr8_2:56087760-56087779 None:intergenic 30.0%
CAACAACTAAGATTCATATC+AGG - chr8_2:56087760-56087779 Msa1256270:intron 30.0%
CCACTAATCACATTTATTTG+TGG + chr8_2:56088002-56088021 None:intergenic 30.0%
CCACAAATAAATGTGATTAG+TGG - chr8_2:56087999-56088018 Msa1256270:intron 30.0%
! TAGGGTTTTCTAATCCTAAA+AGG - chr8_2:56088070-56088089 Msa1256270:intron 30.0%
!! AGCTCTAAGAAATCCAAAAA+CGG - chr8_2:56088134-56088153 Msa1256270:intron 30.0%
CCAATAATTCTTTATTGGCA+TGG + chr8_2:56088322-56088341 None:intergenic 30.0%
CCATGCCAATAAAGAATTAT+TGG - chr8_2:56088319-56088338 Msa1256270:intron 30.0%
!!! CTTGATGTTGATTTTACACA+TGG - chr8_2:56088432-56088451 Msa1256270:intron 30.0%
! GGTCTCTTTAGGAATATTTA+TGG - chr8_2:56088495-56088514 Msa1256270:intron 30.0%
!! TTTTATCCTCCAAAGCATTA+GGG - chr8_2:56088703-56088722 Msa1256270:intron 30.0%
TGTAGAATGCTAAGAAAGAA+AGG + chr8_2:56088964-56088983 None:intergenic 30.0%
GTGTTAAATACCAACTTCTT+TGG - chr8_2:56089123-56089142 Msa1256270:intron 30.0%
CACTGAAATGTAATGTAAGT+GGG + chr8_2:56089366-56089385 None:intergenic 30.0%
TCACTGAAATGTAATGTAAG+TGG + chr8_2:56089367-56089386 None:intergenic 30.0%
ATAGGTTCGTTATTACATGT+AGG - chr8_2:56089575-56089594 Msa1256270:intron 30.0%
TAGGTTCGTTATTACATGTA+GGG - chr8_2:56089576-56089595 Msa1256270:intron 30.0%
! AAGAATTTGCTTCACTGTTA+TGG + chr8_2:56089613-56089632 None:intergenic 30.0%
TCCTAATATCAACAATCATC+GGG + chr8_2:56089859-56089878 None:intergenic 30.0%
AATGGTGCATTGTGAATAAT+AGG - chr8_2:56089913-56089932 Msa1256270:intron 30.0%
ATGTTTCATATCAGATCACA+AGG + chr8_2:56089947-56089966 None:intergenic 30.0%
!! TTTATTTCTAGGTGGGTTAA+TGG - chr8_2:56089981-56090000 Msa1256270:intron 30.0%
!! TTATTTCTAGGTGGGTTAAT+GGG - chr8_2:56089982-56090001 Msa1256270:intron 30.0%
AATAGCACTAGACAATACTT+GGG + chr8_2:56090110-56090129 None:intergenic 30.0%
TAATAGCACTAGACAATACT+TGG + chr8_2:56090111-56090130 None:intergenic 30.0%
TCAAGAAACTGTTGTTAGTA+TGG - chr8_2:56090140-56090159 Msa1256270:CDS 30.0%
AGCATGAATAGTGAAAACAT+TGG + chr8_2:56090235-56090254 None:intergenic 30.0%
TTTCATTTCATTTCCCCACA+AGG - chr8_2:56085059-56085078 Msa1256270:intron 35.0%
! TTGTTCTCTTTTTCCTTGTG+GGG + chr8_2:56085075-56085094 None:intergenic 35.0%
! CTTTGTTCTCTTTTTCCTTG+TGG + chr8_2:56085077-56085096 None:intergenic 35.0%
ATTTGGCATTGTACTATTCC+TGG - chr8_2:56085386-56085405 Msa1256270:three_prime_UTR 35.0%
!! TGAAGTGTCTGTGCTATTTA+GGG - chr8_2:56085695-56085714 Msa1256270:intron 35.0%
AAACTCTTTCTTCTCATCCA+TGG + chr8_2:56085841-56085860 None:intergenic 35.0%
! CAAACATGACCTTATTTGGA+TGG + chr8_2:56085865-56085884 None:intergenic 35.0%
CATCCAAATAAGGTCATGTT+TGG - chr8_2:56085863-56085882 Msa1256270:CDS 35.0%
TGGTGATTAATAGTGAACAG+GGG + chr8_2:56086235-56086254 None:intergenic 35.0%
GATGGTGATTAATAGTGAAC+AGG + chr8_2:56086237-56086256 None:intergenic 35.0%
CACTATTAATCACCATCATC+AGG - chr8_2:56086240-56086259 Msa1256270:intron 35.0%
CATCATCAGGATATCTTTGT+GGG - chr8_2:56086253-56086272 Msa1256270:intron 35.0%
ATCATCAGGATATCTTTGTG+GGG - chr8_2:56086254-56086273 Msa1256270:intron 35.0%
TGGTGGTTATGATTGATTGA+TGG - chr8_2:56086408-56086427 Msa1256270:intron 35.0%
TTTCCTTCTCATTCTTGTAC+TGG - chr8_2:56086687-56086706 Msa1256270:intron 35.0%
TAATGTCTTGAGAATAGAGG+GGG - chr8_2:56086831-56086850 Msa1256270:intron 35.0%
!!! TTTTCCTTTTTCAATGAGCC+AGG + chr8_2:56086869-56086888 None:intergenic 35.0%
GAGGTGATATAATGCTAACA+GGG + chr8_2:56087020-56087039 None:intergenic 35.0%
!!! TGCCTGGGATTTTTTTTTGT+GGG - chr8_2:56087044-56087063 Msa1256270:intron 35.0%
! AAACAGATAGGTATTGCCTA+AGG - chr8_2:56087099-56087118 Msa1256270:intron 35.0%
TTTAACACTGCATGCAACTT+CGG + chr8_2:56087150-56087169 None:intergenic 35.0%
GATATTGTTCCAGTGTCAAA+TGG - chr8_2:56087218-56087237 Msa1256270:intron 35.0%
! TTTTCTGTGATTGACAACAC+TGG - chr8_2:56087286-56087305 Msa1256270:intron 35.0%
TTTCTGTGATTGACAACACT+GGG - chr8_2:56087287-56087306 Msa1256270:intron 35.0%
ATTGACCCAGTATAGTCAAA+GGG + chr8_2:56087335-56087354 None:intergenic 35.0%
AATTGACCCAGTATAGTCAA+AGG + chr8_2:56087336-56087355 None:intergenic 35.0%
! TATCCTACCAAACCTGATTT+TGG + chr8_2:56087620-56087639 None:intergenic 35.0%
! AAAATCAGGTTTGGTAGGAT+AGG - chr8_2:56087619-56087638 Msa1256270:intron 35.0%
! AAATCAGGTTTGGTAGGATA+GGG - chr8_2:56087620-56087639 Msa1256270:intron 35.0%
ATTCTAGCAAACAGTAAGTG+CGG - chr8_2:56087799-56087818 Msa1256270:intron 35.0%
TCTTGTATACAAAACAGAGC+AGG - chr8_2:56087847-56087866 Msa1256270:intron 35.0%
CTTGTATACAAAACAGAGCA+GGG - chr8_2:56087848-56087867 Msa1256270:intron 35.0%
! AATCCTAAAAGGCGTGTTTA+TGG - chr8_2:56088081-56088100 Msa1256270:intron 35.0%
! ATTCCATAAACACGCCTTTT+AGG + chr8_2:56088087-56088106 None:intergenic 35.0%
TGTTTATGGAATCAGATCAC+AGG - chr8_2:56088095-56088114 Msa1256270:intron 35.0%
TTTCTTAGAGCTGGATTTGT+GGG + chr8_2:56088126-56088145 None:intergenic 35.0%
ATTTCTTAGAGCTGGATTTG+TGG + chr8_2:56088127-56088146 None:intergenic 35.0%
!! GTTTTTGGATTTCTTAGAGC+TGG + chr8_2:56088135-56088154 None:intergenic 35.0%
AGTCATCACGTGAATATCTA+CGG + chr8_2:56088285-56088304 None:intergenic 35.0%
CTGTAAACATGGATGAATCA+AGG + chr8_2:56088367-56088386 None:intergenic 35.0%
!!! GATGTTGATTTTACACATGG+TGG - chr8_2:56088435-56088454 Msa1256270:intron 35.0%
ATTTATGGTGATTGGATAGG+TGG - chr8_2:56088510-56088529 Msa1256270:intron 35.0%
GAACTTCATGCTATTCTTCA+TGG - chr8_2:56088573-56088592 Msa1256270:intron 35.0%
!! CTTTTATCCTCCAAAGCATT+AGG - chr8_2:56088702-56088721 Msa1256270:intron 35.0%
!! TTGTTTGGCTCTTAATTGGA+AGG - chr8_2:56088728-56088747 Msa1256270:intron 35.0%
ACATTATCTTCACTGAGAGT+CGG + chr8_2:56088763-56088782 None:intergenic 35.0%
AGTGAAGATAATGTTTGTGC+TGG - chr8_2:56088769-56088788 Msa1256270:intron 35.0%
AACAGCTGCTTAAACCATTA+GGG + chr8_2:56088889-56088908 None:intergenic 35.0%
AAACAGCTGCTTAAACCATT+AGG + chr8_2:56088890-56088909 None:intergenic 35.0%
AGGTTCGTTATTACATGTAG+GGG - chr8_2:56089577-56089596 Msa1256270:intron 35.0%
AACAGTGAAGCAAATTCTTG+TGG - chr8_2:56089614-56089633 Msa1256270:intron 35.0%
ACAGTGAAGCAAATTCTTGT+GGG - chr8_2:56089615-56089634 Msa1256270:intron 35.0%
AAACCAGATAAAAAACGGTC+TGG + chr8_2:56089766-56089785 None:intergenic 35.0%
! CAAAGTGTTCATTCATGTAC+TGG - chr8_2:56089825-56089844 Msa1256270:intron 35.0%
TCCCGATGATTGTTGATATT+AGG - chr8_2:56089855-56089874 Msa1256270:intron 35.0%
! ACAGCTACCTCTTTATTTCT+AGG - chr8_2:56089970-56089989 Msa1256270:intron 35.0%
!! CTACCTCTTTATTTCTAGGT+GGG - chr8_2:56089974-56089993 Msa1256270:intron 35.0%
TAACCCACCTAGAAATAAAG+AGG + chr8_2:56089980-56089999 None:intergenic 35.0%
!! TATTTCTAGGTGGGTTAATG+GGG - chr8_2:56089983-56090002 Msa1256270:intron 35.0%
ACGTTGCAAAGATTATTTCG+CGG + chr8_2:56090026-56090045 None:intergenic 35.0%
!! TGCAACGTAATACTTTTTGC+AGG - chr8_2:56090038-56090057 Msa1256270:intron 35.0%
ATACCACAGAGTATAAGAGA+AGG - chr8_2:56090061-56090080 Msa1256270:intron 35.0%
TACCACAGAGTATAAGAGAA+GGG - chr8_2:56090062-56090081 Msa1256270:intron 35.0%
AACTGTTTCGTTGTGATCAT+TGG - chr8_2:56090190-56090209 Msa1256270:intron 35.0%
GTCAACCAATGAATACTTGT+TGG - chr8_2:56090300-56090319 Msa1256270:CDS 35.0%
TCTCACCAACAAGTATTCAT+TGG + chr8_2:56090308-56090327 None:intergenic 35.0%
TGAATTATGACTTCTCTCTC+AGG - chr8_2:56090385-56090404 Msa1256270:five_prime_UTR 35.0%
TATCAAGCATATACCCCTAT+TGG - chr8_2:56090445-56090464 Msa1256270:five_prime_UTR 35.0%
ATAGTAATAGCTGGCCAATA+GGG + chr8_2:56090462-56090481 None:intergenic 35.0%
AATAGTAATAGCTGGCCAAT+AGG + chr8_2:56090463-56090482 None:intergenic 35.0%
TTTCAAGCATATACCCCTAT+TGG - chr8_2:56090486-56090505 Msa1256270:five_prime_UTR 35.0%
ATAGTAATAGCTGGCCAATA+GGG + chr8_2:56090462-56090481 None:intergenic 35.0%
AATAGTAATAGCTGGCCAAT+AGG + chr8_2:56090463-56090482 None:intergenic 35.0%
ACAGTGATTGTACTCACATG+AGG + chr8_2:56085257-56085276 None:intergenic 40.0%
TGTACTATTCCTGGAAAAGC+TGG - chr8_2:56085395-56085414 Msa1256270:three_prime_UTR 40.0%
GTACTATTCCTGGAAAAGCT+GGG - chr8_2:56085396-56085415 Msa1256270:three_prime_UTR 40.0%
TACTATTCCTGGAAAAGCTG+GGG - chr8_2:56085397-56085416 Msa1256270:three_prime_UTR 40.0%
!! TTTTTACTTGTGTCTGGGGT+AGG - chr8_2:56085548-56085567 Msa1256270:intron 40.0%
!! TTTTACTTGTGTCTGGGGTA+GGG - chr8_2:56085549-56085568 Msa1256270:intron 40.0%
TGTCTGACACCACACATATA+TGG + chr8_2:56085657-56085676 None:intergenic 40.0%
!! CTGAAGTGTCTGTGCTATTT+AGG - chr8_2:56085694-56085713 Msa1256270:intron 40.0%
!! GTCTGTGCTATTTAGGGATA+TGG - chr8_2:56085701-56085720 Msa1256270:intron 40.0%
GCTCATGAGTATGTCATAAG+TGG - chr8_2:56086005-56086024 Msa1256270:intron 40.0%
GGTGATTAATAGTGAACAGG+GGG + chr8_2:56086234-56086253 None:intergenic 40.0%
CCACAAAGATATCCTGATGA+TGG + chr8_2:56086255-56086274 None:intergenic 40.0%
CCATCATCAGGATATCTTTG+TGG - chr8_2:56086252-56086271 Msa1256270:intron 40.0%
CAACCAGTACAAGAATGAGA+AGG + chr8_2:56086693-56086712 None:intergenic 40.0%
ACAAGAGACAGTGTGTCAAT+TGG - chr8_2:56086795-56086814 Msa1256270:intron 40.0%
!! CAGTGTGTCAATTGGTTCTA+AGG - chr8_2:56086803-56086822 Msa1256270:intron 40.0%
AATGTCTTGAGAATAGAGGG+GGG - chr8_2:56086832-56086851 Msa1256270:intron 40.0%
CGAGGTGATATAATGCTAAC+AGG + chr8_2:56087021-56087040 None:intergenic 40.0%
!!! CTGCCTGGGATTTTTTTTTG+TGG - chr8_2:56087043-56087062 Msa1256270:intron 40.0%
!!! GCCTGGGATTTTTTTTTGTG+GGG - chr8_2:56087045-56087064 Msa1256270:intron 40.0%
!!! CCTGGGATTTTTTTTTGTGG+GGG - chr8_2:56087046-56087065 Msa1256270:intron 40.0%
GGTGTGTACTTGAAACAGAT+AGG - chr8_2:56087087-56087106 Msa1256270:intron 40.0%
ATTGTTCCAGTGTCAAATGG+CGG - chr8_2:56087221-56087240 Msa1256270:intron 40.0%
AGTATAGTCAAAGGGCTCAA+AGG + chr8_2:56087327-56087346 None:intergenic 40.0%
TTTGAGCCCTTTGACTATAC+TGG - chr8_2:56087326-56087345 Msa1256270:intron 40.0%
TTGAGCCCTTTGACTATACT+GGG - chr8_2:56087327-56087346 Msa1256270:intron 40.0%
! CGTTGAGTTTTGCTCTGTTT+TGG + chr8_2:56087937-56087956 None:intergenic 40.0%
AGCAAAACTCAACGTGAATG+AGG - chr8_2:56087943-56087962 Msa1256270:intron 40.0%
GCAAAACTCAACGTGAATGA+GGG - chr8_2:56087944-56087963 Msa1256270:intron 40.0%
!! GATTCTGTCACTTCCGTTTT+TGG + chr8_2:56088150-56088169 None:intergenic 40.0%
!! GCAAGATTCCACCGTTTTTA+TGG - chr8_2:56088170-56088189 Msa1256270:intron 40.0%
ATTGCAATTCTGTCCATGCA+CGG - chr8_2:56088225-56088244 Msa1256270:intron 40.0%
ATGGATGAATCAAGGAAGTG+AGG + chr8_2:56088359-56088378 None:intergenic 40.0%
!!! CTGGTTTTAGAGGTCTCTTT+AGG - chr8_2:56088484-56088503 Msa1256270:intron 40.0%
CAAACAAGTCCCTAATGCTT+TGG + chr8_2:56088715-56088734 None:intergenic 40.0%
! CAAAGCATTAGGGACTTGTT+TGG - chr8_2:56088713-56088732 Msa1256270:intron 40.0%
!! GGACTTGTTTGGCTCTTAAT+TGG - chr8_2:56088724-56088743 Msa1256270:intron 40.0%
!! TAATGTTTGTGCTGGCTTCT+TGG - chr8_2:56088777-56088796 Msa1256270:intron 40.0%
ATCTTGAGAAACACCCAACT+TGG + chr8_2:56088803-56088822 None:intergenic 40.0%
GGGATGTTACCGAAAAAAAG+AGG + chr8_2:56088867-56088886 None:intergenic 40.0%
ACAGCTGCTTAAACCATTAG+GGG + chr8_2:56088888-56088907 None:intergenic 40.0%
CTGTTTGATTGCAGATCCAT+GGG - chr8_2:56088904-56088923 Msa1256270:intron 40.0%
TTCCTGCACTCTTAGTTTCT+TGG - chr8_2:56088934-56088953 Msa1256270:intron 40.0%
! AACCAAGAAACTAAGAGTGC+AGG + chr8_2:56088939-56088958 None:intergenic 40.0%
! TATATGTAAACCAGGGCACT+TGG - chr8_2:56089074-56089093 Msa1256270:intron 40.0%
TTCAATCCTAGCAACGAAGA+CGG + chr8_2:56089242-56089261 None:intergenic 40.0%
! TCATTTGCTGCAGACTGATT+GGG - chr8_2:56089327-56089346 Msa1256270:intron 40.0%
! TTCCTGATGGGTAAACATTG+GGG + chr8_2:56089441-56089460 None:intergenic 40.0%
! GTTCCTGATGGGTAAACATT+GGG + chr8_2:56089442-56089461 None:intergenic 40.0%
! AGTTCCTGATGGGTAAACAT+TGG + chr8_2:56089443-56089462 None:intergenic 40.0%
ACAAGCAAACAGTTCCTGAT+GGG + chr8_2:56089453-56089472 None:intergenic 40.0%
TTCGTTATTACATGTAGGGG+TGG - chr8_2:56089580-56089599 Msa1256270:intron 40.0%
ATTTGCTTCACTGTTATGGC+TGG + chr8_2:56089609-56089628 None:intergenic 40.0%
AGGCTATCATCTGTTTATCC+AGG - chr8_2:56089689-56089708 Msa1256270:intron 40.0%
!!! CAACCAGACCGTTTTTTATC+TGG - chr8_2:56089760-56089779 Msa1256270:intron 40.0%
!! GTTTAGAATCAAGGCACTGT+AGG - chr8_2:56089782-56089801 Msa1256270:intron 40.0%
!! GCTACCTCTTTATTTCTAGG+TGG - chr8_2:56089973-56089992 Msa1256270:intron 40.0%
TCTCAGGAACTTCTCATTTC+TGG - chr8_2:56090401-56090420 Msa1256270:five_prime_UTR 40.0%
TAGTAATAGCTGGCCAATAG+GGG + chr8_2:56090461-56090480 None:intergenic 40.0%
TAGTAATAGCTGGCCAATAG+GGG + chr8_2:56090461-56090480 None:intergenic 40.0%
! GTGCGACGTTAATTGATTTC+TGG - chr8_2:56090541-56090560 Msa1256270:five_prime_UTR 40.0%
CGAAACACAACAACCATGTC+TGG - chr8_2:56085179-56085198 Msa1256270:three_prime_UTR 45.0%
! AAACAAACCCCAGCTTTTCC+AGG + chr8_2:56085407-56085426 None:intergenic 45.0%
CGTCTTCGGCAGTATTTCAT+AGG + chr8_2:56085586-56085605 None:intergenic 45.0%
ATCAGTGTCAGTGTCGTCTT+CGG + chr8_2:56085600-56085619 None:intergenic 45.0%
GTGAACAGGGGGTAACTAAA+CGG + chr8_2:56086223-56086242 None:intergenic 45.0%
AAGAGGCAAAAGGACATCGA+AGG + chr8_2:56086742-56086761 None:intergenic 45.0%
TGTGCCTGGCTCATTGAAAA+AGG - chr8_2:56086862-56086881 Msa1256270:intron 45.0%
! TAAGGCTGGTTAGTGCAAGA+TGG + chr8_2:56086906-56086925 None:intergenic 45.0%
!! GTTTGCTTGCTGTGAAGAGT+CGG - chr8_2:56086952-56086971 Msa1256270:intron 45.0%
CCCCCACAAAAAAAAATCCC+AGG + chr8_2:56087049-56087068 None:intergenic 45.0%
TTCGGTAAGACTAGTGCATC+GGG + chr8_2:56087132-56087151 None:intergenic 45.0%
CTTCGGTAAGACTAGTGCAT+CGG + chr8_2:56087133-56087152 None:intergenic 45.0%
! GTGGCACAATAGTGCTATTG+CGG - chr8_2:56087181-56087200 Msa1256270:intron 45.0%
TCAAAGGGCTCAAAGGATTG+GGG + chr8_2:56087320-56087339 None:intergenic 45.0%
GTCAAAGGGCTCAAAGGATT+GGG + chr8_2:56087321-56087340 None:intergenic 45.0%
AGTCAAAGGGCTCAAAGGAT+TGG + chr8_2:56087322-56087341 None:intergenic 45.0%
AGAAACTGCTTCTCTGTGAG+AGG + chr8_2:56087440-56087459 None:intergenic 45.0%
TGTGCCACCAAAATCAGGTT+TGG - chr8_2:56087610-56087629 Msa1256270:intron 45.0%
! CCTACCAAACCTGATTTTGG+TGG + chr8_2:56087617-56087636 None:intergenic 45.0%
! CCACCAAAATCAGGTTTGGT+AGG - chr8_2:56087614-56087633 Msa1256270:intron 45.0%
GTCCAACTTCTTGTCTCACA+CGG + chr8_2:56087973-56087992 None:intergenic 45.0%
GTGTGAGACAAGAAGTTGGA+CGG - chr8_2:56087972-56087991 Msa1256270:intron 45.0%
TTAGAGCTGGATTTGTGGGT+CGG + chr8_2:56088122-56088141 None:intergenic 45.0%
GCGCAAAACCATAAAAACGG+TGG + chr8_2:56088181-56088200 None:intergenic 45.0%
GCGGCGCAAAACCATAAAAA+CGG + chr8_2:56088184-56088203 None:intergenic 45.0%
! AATTGCAATCTGGTGGGCAT+GGG + chr8_2:56088214-56088233 None:intergenic 45.0%
GGACAGAATTGCAATCTGGT+GGG + chr8_2:56088220-56088239 None:intergenic 45.0%
TGGACAGAATTGCAATCTGG+TGG + chr8_2:56088221-56088240 None:intergenic 45.0%
GCATGGACAGAATTGCAATC+TGG + chr8_2:56088224-56088243 None:intergenic 45.0%
TGCAAACCTACGATCCTGAT+GGG + chr8_2:56088262-56088281 None:intergenic 45.0%
AACACCCAAGTGTACATGGA+GGG - chr8_2:56088398-56088417 Msa1256270:intron 45.0%
!! CTCTAAAACCAGACCTGATG+AGG + chr8_2:56088476-56088495 None:intergenic 45.0%
!!! CTCATCAGGTCTGGTTTTAG+AGG - chr8_2:56088474-56088493 Msa1256270:intron 45.0%
TGATTGGATAGGTGGCTTAG+TGG - chr8_2:56088518-56088537 Msa1256270:intron 45.0%
GATTGGATAGGTGGCTTAGT+GGG - chr8_2:56088519-56088538 Msa1256270:intron 45.0%
TTCATGGTCTGACTGTTGCT+TGG - chr8_2:56088589-56088608 Msa1256270:intron 45.0%
! TCATGGTCTGACTGTTGCTT+GGG - chr8_2:56088590-56088609 Msa1256270:intron 45.0%
! TCTGACTGTTGCTTGGGATT+TGG - chr8_2:56088596-56088615 Msa1256270:intron 45.0%
ACAAGTCCCTAATGCTTTGG+AGG + chr8_2:56088712-56088731 None:intergenic 45.0%
TCTTCACTGAGAGTCGGATA+AGG + chr8_2:56088757-56088776 None:intergenic 45.0%
TTTCGGTAACATCCCCCTAA+TGG - chr8_2:56088872-56088891 Msa1256270:intron 45.0%
CAGCTGCTTAAACCATTAGG+GGG + chr8_2:56088887-56088906 None:intergenic 45.0%
GCTGTTTGATTGCAGATCCA+TGG - chr8_2:56088903-56088922 Msa1256270:intron 45.0%
! GTCATTTGCTGCAGACTGAT+TGG - chr8_2:56089326-56089345 Msa1256270:intron 45.0%
TTGGGGGAATTTACACTTCG+GGG + chr8_2:56089407-56089426 None:intergenic 45.0%
CTTGGGGGAATTTACACTTC+GGG + chr8_2:56089408-56089427 None:intergenic 45.0%
CCTTGGGGGAATTTACACTT+CGG + chr8_2:56089409-56089428 None:intergenic 45.0%
ATTGGGGTGGAAGAAACCTT+GGG + chr8_2:56089425-56089444 None:intergenic 45.0%
GACAAGCAAACAGTTCCTGA+TGG + chr8_2:56089454-56089473 None:intergenic 45.0%
CAGATGATAGCCTTCTGTCT+GGG + chr8_2:56089682-56089701 None:intergenic 45.0%
ACAGATGATAGCCTTCTGTC+TGG + chr8_2:56089683-56089702 None:intergenic 45.0%
!! TTGCTTGTCGAAGTGGGTTT+TGG + chr8_2:56089743-56089762 None:intergenic 45.0%
GACCCTTCTCTTATACTCTG+TGG + chr8_2:56090067-56090086 None:intergenic 45.0%
CAGAGTATAAGAGAAGGGTC+CGG - chr8_2:56090067-56090086 Msa1256270:intron 45.0%
!! TAAAATATGAAAATATATAT+TGG - chr8_2:56086612-56086631 Msa1256270:intron 5.0%
ACCATGTCTGGTATTGCTCG+TGG - chr8_2:56085191-56085210 Msa1256270:three_prime_UTR 50.0%
ACCACGAGCAATACCAGACA+TGG + chr8_2:56085195-56085214 None:intergenic 50.0%
TGTCTGGTATTGCTCGTGGT+CGG - chr8_2:56085195-56085214 Msa1256270:three_prime_UTR 50.0%
TCACTGAGGAACGGAAATCG+TGG - chr8_2:56085219-56085238 Msa1256270:three_prime_UTR 50.0%
AAACCAGAGACAGCAGCTGA+TGG - chr8_2:56085347-56085366 Msa1256270:three_prime_UTR 50.0%
! CTTCAGATCGAAGGCGTATC+AGG + chr8_2:56085680-56085699 None:intergenic 50.0%
GCACAGACACTTCAGATCGA+AGG + chr8_2:56085689-56085708 None:intergenic 50.0%
AACAGGGGGTAACTAAACGG+TGG + chr8_2:56086220-56086239 None:intergenic 50.0%
TTATATCACCTCGCTCTGCC+TGG - chr8_2:56087028-56087047 Msa1256270:intron 50.0%
TATATCACCTCGCTCTGCCT+GGG - chr8_2:56087029-56087048 Msa1256270:intron 50.0%
AAAAAATCCCAGGCAGAGCG+AGG + chr8_2:56087039-56087058 None:intergenic 50.0%
TCGGTAAGACTAGTGCATCG+GGG + chr8_2:56087131-56087150 None:intergenic 50.0%
ATAGCACCGCCATTTGACAC+TGG + chr8_2:56087230-56087249 None:intergenic 50.0%
TGGACTGTGCCACCAAAATC+AGG - chr8_2:56087605-56087624 Msa1256270:intron 50.0%
GTCCGTGTGAGACAAGAAGT+TGG - chr8_2:56087968-56087987 Msa1256270:intron 50.0%
GAACACTTCACTAGCTGCGA+CGG + chr8_2:56088037-56088056 None:intergenic 50.0%
TAGAGCTGGATTTGTGGGTC+GGG + chr8_2:56088121-56088140 None:intergenic 50.0%
! GAATTGCAATCTGGTGGGCA+TGG + chr8_2:56088215-56088234 None:intergenic 50.0%
GTGCAAACCTACGATCCTGA+TGG + chr8_2:56088263-56088282 None:intergenic 50.0%
GCAGTTGGAGGCTGTAAACA+TGG + chr8_2:56088378-56088397 None:intergenic 50.0%
! GTACACTTGGGTGTTGCAGT+TGG + chr8_2:56088393-56088412 None:intergenic 50.0%
CTGCAACACCCAAGTGTACA+TGG - chr8_2:56088394-56088413 Msa1256270:intron 50.0%
CAACACCCAAGTGTACATGG+AGG - chr8_2:56088397-56088416 Msa1256270:intron 50.0%
CTTGCCCTCCATGTACACTT+GGG + chr8_2:56088405-56088424 None:intergenic 50.0%
GGTGGCTTAGTGGGATTCTT+TGG - chr8_2:56088528-56088547 Msa1256270:intron 50.0%
ATAGCATGAAGTTCCGCGTG+AGG + chr8_2:56088567-56088586 None:intergenic 50.0%
GTGCAGGAAACATACACCCA+TGG + chr8_2:56088923-56088942 None:intergenic 50.0%
TTACTTCAAGCCAAGTGCCC+TGG + chr8_2:56089087-56089106 None:intergenic 50.0%
AGCAACGAAGACGGAGAACA+AGG + chr8_2:56089233-56089252 None:intergenic 50.0%
TGTTCTCCGTCTTCGTTGCT+AGG - chr8_2:56089233-56089252 Msa1256270:intron 50.0%
TTTGCTGCAGACTGATTGGG+AGG - chr8_2:56089330-56089349 Msa1256270:intron 50.0%
TTGCTGCAGACTGATTGGGA+GGG - chr8_2:56089331-56089350 Msa1256270:intron 50.0%
TGGGGGAATTTACACTTCGG+GGG + chr8_2:56089406-56089425 None:intergenic 50.0%
CCGAAGTGTAAATTCCCCCA+AGG - chr8_2:56089406-56089425 Msa1256270:intron 50.0%
TTGGGGTGGAAGAAACCTTG+GGG + chr8_2:56089424-56089443 None:intergenic 50.0%
CATTGGGGTGGAAGAAACCT+TGG + chr8_2:56089426-56089445 None:intergenic 50.0%
! CTGATGGGTAAACATTGGGG+TGG + chr8_2:56089438-56089457 None:intergenic 50.0%
CACCCCAATGTTTACCCATC+AGG - chr8_2:56089436-56089455 Msa1256270:intron 50.0%
ATGATAGCCTTCTGTCTGGG+CGG + chr8_2:56089679-56089698 None:intergenic 50.0%
GTCTGGTTGCTTGTCGAAGT+GGG + chr8_2:56089749-56089768 None:intergenic 50.0%
CTGAGGAACGGAAATCGTGG+CGG - chr8_2:56085222-56085241 Msa1256270:three_prime_UTR 55.0%
GAACCATCAGCTGCTGTCTC+TGG + chr8_2:56085353-56085372 None:intergenic 55.0%
! ACTTGTGTCTGGGGTAGGGT+TGG - chr8_2:56085553-56085572 Msa1256270:intron 55.0%
! CTTGTGTCTGGGGTAGGGTT+GGG - chr8_2:56085554-56085573 Msa1256270:intron 55.0%
! TTGTGTCTGGGGTAGGGTTG+GGG - chr8_2:56085555-56085574 Msa1256270:intron 55.0%
CTCAGACCCATCAGGATCGT+AGG - chr8_2:56088253-56088272 Msa1256270:intron 55.0%
CACGTGATGACTCGCGATCT+TGG - chr8_2:56088293-56088312 Msa1256270:intron 55.0%
! CACTTGGGTGTTGCAGTTGG+AGG + chr8_2:56088390-56088409 None:intergenic 55.0%
GCTTGCCCTCCATGTACACT+TGG + chr8_2:56088406-56088425 None:intergenic 55.0%
GCTCTCCTTGAAGCCTCATC+AGG - chr8_2:56088460-56088479 Msa1256270:intron 55.0%
CCAGACCTGATGAGGCTTCA+AGG + chr8_2:56088468-56088487 None:intergenic 55.0%
CCTTGAAGCCTCATCAGGTC+TGG - chr8_2:56088465-56088484 Msa1256270:intron 55.0%
AAGTTCCGCGTGAGGACTAG+AGG + chr8_2:56088559-56088578 None:intergenic 55.0%
!! TGCTGGCTTCTTGGCCAAGT+TGG - chr8_2:56088786-56088805 Msa1256270:intron 55.0%
! GCTGGCTTCTTGGCCAAGTT+GGG - chr8_2:56088787-56088806 Msa1256270:intron 55.0%
!! TACACTTCGGGGGCTTGCTA+GGG + chr8_2:56089396-56089415 None:intergenic 55.0%
! TTACACTTCGGGGGCTTGCT+AGG + chr8_2:56089397-56089416 None:intergenic 55.0%
TGGGGTGGAAGAAACCTTGG+GGG + chr8_2:56089423-56089442 None:intergenic 55.0%
TGATAGCCTTCTGTCTGGGC+GGG + chr8_2:56089678-56089697 None:intergenic 55.0%
GGTCTGGTTGCTTGTCGAAG+TGG + chr8_2:56089750-56089769 None:intergenic 55.0%
!! CAAGGCACTGTAGGTCGACA+TGG - chr8_2:56089791-56089810 Msa1256270:intron 55.0%
TAAGAGAAGGGTCCGGCTAC+AGG - chr8_2:56090074-56090093 Msa1256270:intron 55.0%
GGTACTGCTTTGCCTGTAGC+CGG + chr8_2:56090089-56090108 None:intergenic 55.0%
! GTGGTCGGCTCACTGAGGAA+CGG - chr8_2:56085210-56085229 Msa1256270:three_prime_UTR 60.0%
! TGTGTCTGGGGTAGGGTTGG+GGG - chr8_2:56085556-56085575 Msa1256270:intron 60.0%
! AGGGGGGAAAAGAGTGTGCC+TGG - chr8_2:56086848-56086867 Msa1256270:intron 60.0%
TGCATCGGGGCATGTGCCTT+AGG + chr8_2:56087118-56087137 None:intergenic 60.0%
! GCAATCTGGTGGGCATGGGT+GGG + chr8_2:56088210-56088229 None:intergenic 60.0%
! TGCAATCTGGTGGGCATGGG+TGG + chr8_2:56088211-56088230 None:intergenic 60.0%
TCCCTCCTCTAGTCCTCACG+CGG - chr8_2:56088551-56088570 Msa1256270:intron 60.0%
TCCGCGTGAGGACTAGAGGA+GGG + chr8_2:56088555-56088574 None:intergenic 60.0%
TTCCGCGTGAGGACTAGAGG+AGG + chr8_2:56088556-56088575 None:intergenic 60.0%
CTGCAGACTGATTGGGAGGG+TGG - chr8_2:56089334-56089353 Msa1256270:intron 60.0%
CGGGATCAGCAGGATTTGGC+TGG + chr8_2:56089659-56089678 None:intergenic 60.0%
TGGGCGGGATCAGCAGGATT+TGG + chr8_2:56089663-56089682 None:intergenic 60.0%
! TGCTCGTGGTCGGCTCACTG+AGG - chr8_2:56085205-56085224 Msa1256270:three_prime_UTR 65.0%
! GTGTCTGGGGTAGGGTTGGG+GGG - chr8_2:56085557-56085576 Msa1256270:intron 65.0%
GGTCTGAGCGTGTCCGTGCA+TGG + chr8_2:56088241-56088260 None:intergenic 65.0%
CGGACACGCTCAGACCCATC+AGG - chr8_2:56088245-56088264 Msa1256270:intron 65.0%
TCTGTCTGGGCGGGATCAGC+AGG + chr8_2:56089669-56089688 None:intergenic 65.0%
GCTGATCCCGCCCAGACAGA+AGG - chr8_2:56089669-56089688 Msa1256270:intron 65.0%
GGTGGGCATGGGTGGGATCG+CGG + chr8_2:56088203-56088222 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 56084943 56090599 56084943 ID=Msa1256270;Name=Msa1256270
chr8_2 mRNA 56084943 56090599 56084943 ID=Msa1256270-mRNA-1;Parent=Msa1256270;Name=Msa1256270-mRNA-1;_AED=0.07;_eAED=0.07;_QI=251|1|1|1|0.4|0.66|6|436|159
chr8_2 exon 56084943 56085050 56084943 ID=Msa1256270-mRNA-1:exon:17353;Parent=Msa1256270-mRNA-1
chr8_2 exon 56085092 56085482 56085092 ID=Msa1256270-mRNA-1:exon:17352;Parent=Msa1256270-mRNA-1
chr8_2 exon 56085832 56085945 56085832 ID=Msa1256270-mRNA-1:exon:17351;Parent=Msa1256270-mRNA-1
chr8_2 exon 56086050 56086202 56086050 ID=Msa1256270-mRNA-1:exon:17350;Parent=Msa1256270-mRNA-1
chr8_2 exon 56090124 56090207 56090124 ID=Msa1256270-mRNA-1:exon:17349;Parent=Msa1256270-mRNA-1
chr8_2 exon 56090283 56090599 56090283 ID=Msa1256270-mRNA-1:exon:17348;Parent=Msa1256270-mRNA-1
chr8_2 five_prime_UTR 56090349 56090599 56090349 ID=Msa1256270-mRNA-1:five_prime_utr;Parent=Msa1256270-mRNA-1
chr8_2 CDS 56090283 56090348 56090283 ID=Msa1256270-mRNA-1:cds;Parent=Msa1256270-mRNA-1
chr8_2 CDS 56090124 56090207 56090124 ID=Msa1256270-mRNA-1:cds;Parent=Msa1256270-mRNA-1
chr8_2 CDS 56086050 56086202 56086050 ID=Msa1256270-mRNA-1:cds;Parent=Msa1256270-mRNA-1
chr8_2 CDS 56085832 56085945 56085832 ID=Msa1256270-mRNA-1:cds;Parent=Msa1256270-mRNA-1
chr8_2 CDS 56085420 56085482 56085420 ID=Msa1256270-mRNA-1:cds;Parent=Msa1256270-mRNA-1
chr8_2 three_prime_UTR 56085092 56085419 56085092 ID=Msa1256270-mRNA-1:three_prime_utr;Parent=Msa1256270-mRNA-1
chr8_2 three_prime_UTR 56084943 56085050 56084943 ID=Msa1256270-mRNA-1:three_prime_utr;Parent=Msa1256270-mRNA-1
Gene Sequence

>Msa1256270

ATGTCTGGTATTGCTCGTGGTCGGCTCACTGAGGAACGGAAATCGTGGCGGAAGAATCATCCTCATGGTTTTGTTGCGAAACCAGAGACAGCAGCTGATGGTTCTGTGAATTTGATGATTTGGCATTGTACTATTCCTGGAAAAGCTGGGACTGATTGGGAGGGTGGCTACTTCCCACTTACATTACATTTCAGTGAAGACTACCCTAGCAAGCCCCCGAAGTGTAAATTCCCCCAAGGTTTCTTCCACCCCAATGTTTACCCATCAGGAACTGTTTGCTTGTCTATACTCAATGAAGATAGTGGGTGGAGACCAGCCATAACAGTGAAGCAAATTCTTGTGGGCATTCAAGATTTGCTTGACCAGCCAAATCCTGCTGATCCCGCCCAGACAGAAGGCTATCATCTGTTTATCCAGGATACCACAGAGTATAAGAGAAGGGTCCGGCTACAGGCAAAGCAGTACCCAAGTATTGTCTAG
Protein sequence

>Msa1256270

MSGIARGRLTEERKSWRKNHPHGFVAKPETAADGSVNLMIWHCTIPGKAGTDWEGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDTTEYKRRVRLQAKQYPSIV*