AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0682090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682090 MtrunA17_Chr4g0028231 99.559 227 1 0 1 227 1 227 1.14e-162 448
Msa0682090 MtrunA17_Chr1g0183621 31.892 185 126 0 1 185 1 185 1.18e-25 99.8
Msa0682090 MtrunA17_Chr2g0303251 29.730 222 148 1 5 226 1 214 4.89e-21 87.4
Msa0682090 MtrunA17_Chr7g0261511 32.018 228 133 4 5 227 1 211 1.35e-18 80.9
Msa0682090 MtrunA17_Chr2g0300321 28.634 227 146 5 7 226 4 221 5.15e-15 71.2
Msa0682090 MtrunA17_Chr8g0343561 27.684 177 126 2 7 182 4 179 1.40e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682090 AT5G22950.1 82.969 229 37 1 1 227 1 229 4.32e-126 356
Msa0682090 AT3G45000.1 72.362 199 53 1 31 227 2 200 1.04e-87 258
Msa0682090 AT3G45000.2 76.259 139 31 1 91 227 1 139 6.56e-59 182
Msa0682090 AT1G03950.1 31.532 222 140 3 5 226 1 210 1.05e-28 107
Msa0682090 AT5G44560.1 29.834 181 127 0 5 185 1 181 9.37e-21 87.0
Msa0682090 AT5G44560.4 29.213 178 126 0 5 182 1 178 6.22e-20 84.3
Msa0682090 AT2G06530.1 29.362 235 142 7 4 226 1 223 6.92e-17 77.0
Msa0682090 AT5G44560.2 28.662 157 112 0 29 185 5 161 1.19e-14 70.5
Msa0682090 AT2G06530.2 28.638 213 129 6 25 226 2 202 9.17e-13 65.5
Msa0682090 AT5G44560.3 30.534 131 91 0 5 135 1 131 1.04e-12 64.3

Find 60 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAATAACTGTTGCGGATT+TGG 0.162141 4_4:-43140521 None:intergenic
ATTATATATACAAAATAAAA+TGG 0.182644 4_4:-43140448 None:intergenic
AAGAAGAAATGGAAGAAATT+AGG 0.185877 4_4:+43144697 Msa0682090:CDS
ACTCTCTTATAATATATATC+AGG 0.254147 4_4:-43144867 None:intergenic
TGCATAGCAACAGCCATTTC+AGG 0.256684 4_4:-43144249 None:intergenic
GAATGAAAATTAATTATTCT+TGG 0.264027 4_4:-43140407 None:intergenic
AACTGTTGCGGATTTGGTTT+CGG 0.312520 4_4:-43140515 None:intergenic
CCCATTTGTAATATTAGTAT+TGG 0.323850 4_4:+43144907 Msa0682090:three_prime_UTR
CGCAACAGTTATTGAGAGAT+TGG 0.341374 4_4:+43140528 Msa0682090:CDS
TCCAATACTAATATTACAAA+TGG 0.345851 4_4:-43144908 None:intergenic
TTATATATACAAAATAAAAT+GGG 0.355594 4_4:-43140447 None:intergenic
GAACCGTCTGCATGAAAATA+AGG 0.358366 4_4:+43141914 Msa0682090:CDS
TGACCTGACTTTAGCGAGTC+TGG 0.371271 4_4:-43144721 None:intergenic
AGAAGAAATGGAAGAAATTA+GGG 0.376649 4_4:+43144698 Msa0682090:CDS
CTACAGAACTTGTGAGATCT+AGG 0.401420 4_4:+43141883 Msa0682090:CDS
TCATAAACGAGTTTCTAAAA+AGG 0.417167 4_4:+43144741 Msa0682090:exon
TGTAATATTAGTATTGGAAA+AGG 0.419711 4_4:+43144913 Msa0682090:three_prime_UTR
CCTCATGAAGGCTCCTGAAA+TGG 0.421101 4_4:+43144236 Msa0682090:CDS
TCCTCTGCGGCACTTTGAGC+AGG 0.453503 4_4:-43144557 None:intergenic
TTCAGCAATTGCTCGTACTG+TGG 0.454062 4_4:+43144170 Msa0682090:intron
CATATTAGCTATGATGCCAT+TGG 0.473050 4_4:-43144946 None:intergenic
GGAATATAAATTATCGAAGA+AGG 0.474281 4_4:-43140354 None:intergenic
TGATTTAGATATTCAGAGAG+AGG 0.474813 4_4:+43140693 Msa0682090:intron
TGTTGATGATGAAGAAGAAA+TGG 0.478357 4_4:+43144686 Msa0682090:CDS
TTCTTCATCATCAACACCCT+CGG 0.485224 4_4:-43144679 None:intergenic
CCAATACTAATATTACAAAT+GGG 0.494913 4_4:-43144907 None:intergenic
AGGTGGGTGTGTTGTTCGTA+AGG 0.498532 4_4:+43140286 Msa0682090:five_prime_UTR
GTTTCAGGCAGGAGTAATTG+AGG 0.506660 4_4:+43144385 Msa0682090:intron
GGGCCAGACTCGCTAAAGTC+AGG 0.512607 4_4:+43144718 Msa0682090:CDS
CTATTAAAGAAGCTGCTAAG+AGG 0.518339 4_4:+43140734 Msa0682090:CDS
AAAGTCTTAACTGAATTAGC+TGG 0.521196 4_4:+43144482 Msa0682090:CDS
AAAGAAGAAGATATTGAAGG+TGG 0.525044 4_4:+43140269 Msa0682090:five_prime_UTR
TCAGCAATTGCTCGTACTGT+GGG 0.530452 4_4:+43144171 Msa0682090:intron
AACATTGAACGACAAATTCG+CGG 0.539995 4_4:+43140578 Msa0682090:CDS
TGAAGCTGTGAGGAAACAAA+AGG 0.551851 4_4:+43144526 Msa0682090:CDS
CAATCTCTCAATAACTGTTG+CGG 0.557549 4_4:-43140527 None:intergenic
AAAAGGTGACTTATTACCAA+TGG 0.570569 4_4:+43144930 Msa0682090:three_prime_UTR
TGCTCAAAGTGCCGCAGAGG+AGG 0.582103 4_4:+43144559 Msa0682090:CDS
CTCTCTTATAATATATATCA+GGG 0.589567 4_4:-43144866 None:intergenic
AAGAAGAAGATATTGAAGGT+GGG 0.594381 4_4:+43140270 Msa0682090:five_prime_UTR
AACTCAATATCAATGCACCT+TGG 0.594406 4_4:+43141945 Msa0682090:CDS
ACCTGCTCAAAGTGCCGCAG+AGG 0.595296 4_4:+43144556 Msa0682090:CDS
TATATATACAAAATAAAATG+GGG 0.596746 4_4:-43140446 None:intergenic
TGACTCAGCATTAGATTCTG+AGG 0.600712 4_4:+43144427 Msa0682090:CDS
TGAAGATTAGATCTTACTGA+AGG 0.602356 4_4:-43140375 None:intergenic
CAGGAAGATGCTATAGCCGA+GGG 0.609938 4_4:+43144663 Msa0682090:intron
GCTTGTCAATAACCTCATGA+AGG 0.612171 4_4:+43144224 Msa0682090:CDS
ACCTACCAACACTTTCTCCA+AGG 0.615558 4_4:-43141962 None:intergenic
CCATTTCAGGAGCCTTCATG+AGG 0.615981 4_4:-43144236 None:intergenic
GAATGACATTGGTTCTGCAA+AGG 0.618815 4_4:+43140756 Msa0682090:CDS
GCAGGAAGATGCTATAGCCG+AGG 0.620355 4_4:+43144662 Msa0682090:intron
ATGCACCTTGGAGAAAGTGT+TGG 0.628455 4_4:+43141957 Msa0682090:CDS
ATTGACAAGCTTCATAACCT+CGG 0.641959 4_4:-43144211 None:intergenic
TATATCAGGGCACAATGCAG+AGG 0.655974 4_4:-43144853 None:intergenic
CACAACTTCCTGAAGCTGTG+AGG 0.670413 4_4:+43144516 Msa0682090:CDS
AACTGCATGTACCTCCTCTG+CGG 0.671034 4_4:-43144570 None:intergenic
GCTGCTAAGAGGAATGACAT+TGG 0.677222 4_4:+43140745 Msa0682090:CDS
CACAGCTTCAGGAAGTTGTG+CGG 0.680019 4_4:-43144513 None:intergenic
ACATCTATCAAAGAGTGCCG+AGG 0.689000 4_4:+43144194 Msa0682090:CDS
GTTCAGCAAAGAAATGACCA+AGG 0.706921 4_4:+43144275 Msa0682090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTTTTTTATTT+TGG + chr4_4:43141358-43141377 Msa0682090:intron 0.0%
!!! TTTTTTATTTTTTTTATTTT+GGG + chr4_4:43141359-43141378 Msa0682090:intron 0.0%
!! TATATATACAAAATAAAATG+GGG - chr4_4:43140449-43140468 None:intergenic 10.0%
!!! ATATTTTTTAATCTTTACAA+TGG + chr4_4:43143347-43143366 Msa0682090:intron 10.0%
!! GAATGAAAATTAATTATTCT+TGG - chr4_4:43140410-43140429 None:intergenic 15.0%
!!! TTTTATTCTTAAATTACTAC+AGG - chr4_4:43140842-43140861 None:intergenic 15.0%
!!! TTTTTAATAAAGAGTATGTT+TGG - chr4_4:43142220-43142239 None:intergenic 15.0%
!!! ATTTTATCTATAGTTTTTTG+AGG + chr4_4:43142627-43142646 Msa0682090:intron 15.0%
!! CTTATAATAATTAGCTATTA+AGG - chr4_4:43143143-43143162 None:intergenic 15.0%
!! TAAAAAGAAGAAGATATTGA+AGG + chr4_4:43140266-43140285 Msa0682090:five_prime_UTR 20.0%
!!! TAAGAATAAAATTAGCTTAG+TGG + chr4_4:43140851-43140870 Msa0682090:intron 20.0%
!! GTTTCTCTTAAAAAATTTCT+AGG - chr4_4:43141092-43141111 None:intergenic 20.0%
!! AAATTTAGTGATTAATGAGT+TGG + chr4_4:43141121-43141140 Msa0682090:intron 20.0%
!!! GTTTTATCATAAACCATATT+TGG - chr4_4:43141149-43141168 None:intergenic 20.0%
!! TATGGTTTATGATAAAACAT+AGG + chr4_4:43141151-43141170 Msa0682090:intron 20.0%
!! ATGGTTTATGATAAAACATA+GGG + chr4_4:43141152-43141171 Msa0682090:intron 20.0%
!!! AGTGTATATACAAGTTTTTA+TGG + chr4_4:43141546-43141565 Msa0682090:intron 20.0%
!! AAAATCTAATATCCTTATCA+TGG + chr4_4:43141835-43141854 Msa0682090:intron 20.0%
!!! ATGATCAAATGTTTTGTTTA+TGG + chr4_4:43142375-43142394 Msa0682090:intron 20.0%
!!! TGATCAAATGTTTTGTTTAT+GGG + chr4_4:43142376-43142395 Msa0682090:intron 20.0%
!!! ATTTTATCTATAGGTTTTTG+AGG + chr4_4:43142425-43142444 Msa0682090:intron 20.0%
!!! TATGATGTTTTACAATTATC+AGG + chr4_4:43143426-43143445 Msa0682090:intron 20.0%
!! TCTTATCTCAAGTATTTATT+TGG + chr4_4:43143949-43143968 Msa0682090:intron 20.0%
!!! TGATCAATGACTAATTTTAA+AGG - chr4_4:43144103-43144122 None:intergenic 20.0%
!! GTTAATTGCATGATAATTAT+TGG + chr4_4:43144351-43144370 Msa0682090:intron 20.0%
!! CTCTCTTATAATATATATCA+GGG - chr4_4:43144869-43144888 None:intergenic 20.0%
!! ACTCTCTTATAATATATATC+AGG - chr4_4:43144870-43144889 None:intergenic 20.0%
!! CCAATACTAATATTACAAAT+GGG - chr4_4:43144910-43144929 None:intergenic 20.0%
!! TCCAATACTAATATTACAAA+TGG - chr4_4:43144911-43144930 None:intergenic 20.0%
!!! TGTAATATTAGTATTGGAAA+AGG + chr4_4:43144913-43144932 Msa0682090:three_prime_UTR 20.0%
! GGAATATAAATTATCGAAGA+AGG - chr4_4:43140357-43140376 None:intergenic 25.0%
!! ATAAAATGGGGAATTTTTGA+AGG - chr4_4:43140437-43140456 None:intergenic 25.0%
!!! GTTTTAAGAGAGATCAAAAA+TGG - chr4_4:43140610-43140629 None:intergenic 25.0%
! GAAGAATCAAGTATCAATTA+GGG - chr4_4:43140632-43140651 None:intergenic 25.0%
! AGAAGAATCAAGTATCAATT+AGG - chr4_4:43140633-43140652 None:intergenic 25.0%
! TTGATTCTTCTGATTATTTG+TGG + chr4_4:43140642-43140661 Msa0682090:intron 25.0%
! TGATTATTTGTGGTTATGAT+TGG + chr4_4:43140652-43140671 Msa0682090:intron 25.0%
!!! TTCATAACCAATGCTATTTT+TGG + chr4_4:43141722-43141741 Msa0682090:intron 25.0%
!!! GTCTTCTTTTTTAGATTTCA+AGG + chr4_4:43141773-43141792 Msa0682090:intron 25.0%
! ATTGAACAAATACCATGATA+AGG - chr4_4:43141850-43141869 None:intergenic 25.0%
! ATGGTATTTGTTCAATTTAC+AGG + chr4_4:43141854-43141873 Msa0682090:intron 25.0%
!! TAGTTTTTGCAAAATCACAA+TGG - chr4_4:43142069-43142088 None:intergenic 25.0%
!! CACAACTTTTGATAAAATCA+CGG + chr4_4:43142159-43142178 Msa0682090:intron 25.0%
! ATTCAACTTAGTTAACAAGA+GGG - chr4_4:43142323-43142342 None:intergenic 25.0%
! TATTCAACTTAGTTAACAAG+AGG - chr4_4:43142324-43142343 None:intergenic 25.0%
!! TCTTGTTAACTAAGTTGAAT+AGG + chr4_4:43142323-43142342 Msa0682090:intron 25.0%
!!! GATCAAATGTTTTGTTTATG+GGG + chr4_4:43142377-43142396 Msa0682090:intron 25.0%
!! TGTCTATGGATTTTATCTAT+AGG + chr4_4:43142416-43142435 Msa0682090:intron 25.0%
!! CATGATTGTTTCATTTTAGA+AGG + chr4_4:43143266-43143285 Msa0682090:intron 25.0%
! AATTATTCTCTTCTTGAATG+TGG - chr4_4:43143510-43143529 None:intergenic 25.0%
! AGAAGAGAATAATTCAGTAA+AGG + chr4_4:43143516-43143535 Msa0682090:intron 25.0%
! GAAGAGAATAATTCAGTAAA+GGG + chr4_4:43143517-43143536 Msa0682090:intron 25.0%
! AAGAGAATAATTCAGTAAAG+GGG + chr4_4:43143518-43143537 Msa0682090:intron 25.0%
! AGCCAAATAACTAATTTAAC+AGG + chr4_4:43143553-43143572 Msa0682090:intron 25.0%
! CTCCTGTTAAATTAGTTATT+TGG - chr4_4:43143558-43143577 None:intergenic 25.0%
! CAAATAACTAATTTAACAGG+AGG + chr4_4:43143556-43143575 Msa0682090:intron 25.0%
!! TGATTTTCATACAAAGGATT+AGG - chr4_4:43143738-43143757 None:intergenic 25.0%
!! TAACTGTGATTTTCATACAA+AGG - chr4_4:43143744-43143763 None:intergenic 25.0%
! GTATGAAAATCACAGTTAAA+TGG + chr4_4:43143746-43143765 Msa0682090:intron 25.0%
!!! TGCATTTTTAGGTTTTACTT+TGG + chr4_4:43143810-43143829 Msa0682090:intron 25.0%
!!! GCATTTTTAGGTTTTACTTT+GGG + chr4_4:43143811-43143830 Msa0682090:intron 25.0%
!!! CATTTTTAGGTTTTACTTTG+GGG + chr4_4:43143812-43143831 Msa0682090:intron 25.0%
! CATAATATAGTCATTGTACA+AGG - chr4_4:43143975-43143994 None:intergenic 25.0%
!! TTGATAATAGAACTGTTCAT+TGG + chr4_4:43144124-43144143 Msa0682090:intron 25.0%
!! TCATTGGAAATTCCTAATTT+TGG + chr4_4:43144140-43144159 Msa0682090:intron 25.0%
! AAGAAGAAATGGAAGAAATT+AGG + chr4_4:43144697-43144716 Msa0682090:CDS 25.0%
! AGAAGAAATGGAAGAAATTA+GGG + chr4_4:43144698-43144717 Msa0682090:CDS 25.0%
!! TCATAAACGAGTTTCTAAAA+AGG + chr4_4:43144741-43144760 Msa0682090:exon 25.0%
! TCATAAAAAGTTCTACTTTC+TGG + chr4_4:43144817-43144836 Msa0682090:three_prime_UTR 25.0%
! CCCATTTGTAATATTAGTAT+TGG + chr4_4:43144907-43144926 Msa0682090:three_prime_UTR 25.0%
AAAGAAGAAGATATTGAAGG+TGG + chr4_4:43140269-43140288 Msa0682090:five_prime_UTR 30.0%
AAGAAGAAGATATTGAAGGT+GGG + chr4_4:43140270-43140289 Msa0682090:five_prime_UTR 30.0%
TGAAGATTAGATCTTACTGA+AGG - chr4_4:43140378-43140397 None:intergenic 30.0%
!!! ATTTTGGGATCAGTGAAAAA+TGG + chr4_4:43140469-43140488 Msa0682090:exon 30.0%
TGATTTAGATATTCAGAGAG+AGG + chr4_4:43140693-43140712 Msa0682090:intron 30.0%
AGTAAGGAGTTTAGATTAGA+TGG + chr4_4:43141034-43141053 Msa0682090:intron 30.0%
! TAATGAGTTGGATCCAAATA+TGG + chr4_4:43141133-43141152 Msa0682090:intron 30.0%
GTACAAACCAAAAATAGCAT+TGG - chr4_4:43141732-43141751 None:intergenic 30.0%
!!! ATGCTATTTTTGGTTTGTAC+TGG + chr4_4:43141732-43141751 Msa0682090:intron 30.0%
AAAAAAGAAGACTGCCTAAA+AGG - chr4_4:43141765-43141784 None:intergenic 30.0%
AAGGTTCGATAGAATAAAGT+AGG + chr4_4:43141792-43141811 Msa0682090:intron 30.0%
TATCAAAAGTTGTGCAAGTT+TGG - chr4_4:43142153-43142172 None:intergenic 30.0%
!!! TCTATAGTTTTTTGAGGTTG+AGG + chr4_4:43142633-43142652 Msa0682090:intron 30.0%
!!! CTATAGTTTTTTGAGGTTGA+GGG + chr4_4:43142634-43142653 Msa0682090:intron 30.0%
CAACATAAATGTTTCACTCT+TGG + chr4_4:43142687-43142706 Msa0682090:intron 30.0%
TATCTTAACATGCTATAGCT+AGG + chr4_4:43142730-43142749 Msa0682090:intron 30.0%
! TTCTCTTTTTCTTATGCCTT+GGG - chr4_4:43142964-43142983 None:intergenic 30.0%
! TTTCTCTTTTTCTTATGCCT+TGG - chr4_4:43142965-43142984 None:intergenic 30.0%
! CAAGCTGAATTTTATTCATG+AGG + chr4_4:43143022-43143041 Msa0682090:intron 30.0%
!! ATTTTATTCATGAGGCATTC+TGG + chr4_4:43143030-43143049 Msa0682090:intron 30.0%
!! TTTTATTCATGAGGCATTCT+GGG + chr4_4:43143031-43143050 Msa0682090:intron 30.0%
!!! CTTTTGATTTGTAACTACAC+AGG + chr4_4:43143207-43143226 Msa0682090:intron 30.0%
!! TTTCTTTTGAGAAGATGAAG+CGG + chr4_4:43143306-43143325 Msa0682090:intron 30.0%
AACATAGAATGACATTGACA+AGG + chr4_4:43143392-43143411 Msa0682090:intron 30.0%
ACATAGAATGACATTGACAA+GGG + chr4_4:43143393-43143412 Msa0682090:intron 30.0%
TTATACAAAATGAACCTTGC+TGG - chr4_4:43143681-43143700 None:intergenic 30.0%
CAAATTAAAACAGGAAGAGA+GGG + chr4_4:43143874-43143893 Msa0682090:intron 30.0%
AAATTAAAACAGGAAGAGAG+GGG + chr4_4:43143875-43143894 Msa0682090:intron 30.0%
AATTAACTTCTATGACTACG+GGG - chr4_4:43144338-43144357 None:intergenic 30.0%
CAATTAACTTCTATGACTAC+GGG - chr4_4:43144339-43144358 None:intergenic 30.0%
GCAATTAACTTCTATGACTA+CGG - chr4_4:43144340-43144359 None:intergenic 30.0%
!! TTGGTAATGTATTCTGTTTC+AGG + chr4_4:43144370-43144389 Msa0682090:intron 30.0%
AAAGTCTTAACTGAATTAGC+TGG + chr4_4:43144482-43144501 Msa0682090:CDS 30.0%
AGTTCAATTTCCTGTTAACA+AGG + chr4_4:43144589-43144608 Msa0682090:intron 30.0%
TGGAATGCATTATTATTTGC+AGG + chr4_4:43144644-43144663 Msa0682090:intron 30.0%
!! TGTTGATGATGAAGAAGAAA+TGG + chr4_4:43144686-43144705 Msa0682090:CDS 30.0%
AAAAGGTGACTTATTACCAA+TGG + chr4_4:43144930-43144949 Msa0682090:three_prime_UTR 30.0%
!! ATGGGGAATTTTTGAAGGAT+TGG - chr4_4:43140432-43140451 None:intergenic 35.0%
CAATCTCTCAATAACTGTTG+CGG - chr4_4:43140530-43140549 None:intergenic 35.0%
AACATTGAACGACAAATTCG+CGG + chr4_4:43140578-43140597 Msa0682090:CDS 35.0%
CTATTAAAGAAGCTGCTAAG+AGG + chr4_4:43140734-43140753 Msa0682090:CDS 35.0%
ACCTATAGTAGAAAAGATCG+TGG + chr4_4:43140959-43140978 Msa0682090:intron 35.0%
! TCCACGATCTTTTCTACTAT+AGG - chr4_4:43140963-43140982 None:intergenic 35.0%
! GACGTGTAGATTTTGTAGTA+AGG + chr4_4:43141018-43141037 Msa0682090:intron 35.0%
AAGGAGTTTAGATTAGATGG+AGG + chr4_4:43141037-43141056 Msa0682090:intron 35.0%
CTTATCTCATTAAGTGGGAT+AGG - chr4_4:43141196-43141215 None:intergenic 35.0%
CTATCCCACTTAATGAGATA+AGG + chr4_4:43141194-43141213 Msa0682090:intron 35.0%
! CAAGCCTTATCTCATTAAGT+GGG - chr4_4:43141201-43141220 None:intergenic 35.0%
GTTTCAAAAGGCTAGAAGTT+TGG - chr4_4:43141452-43141471 None:intergenic 35.0%
!!! TTCTAGCCTTTTGAAACAAC+AGG + chr4_4:43141455-43141474 Msa0682090:intron 35.0%
GAAAGACAGTACATTGAATG+AGG - chr4_4:43141498-43141517 None:intergenic 35.0%
! TACCCAATTGAAGGCATATT+CGG + chr4_4:43141603-43141622 Msa0682090:intron 35.0%
AACTCAATATCAATGCACCT+TGG + chr4_4:43141945-43141964 Msa0682090:CDS 35.0%
!! TTTGCCTTAATTTGTCCTCT+TGG + chr4_4:43142000-43142019 Msa0682090:intron 35.0%
AACTACACTTTGTGCATGTT+TGG + chr4_4:43142084-43142103 Msa0682090:intron 35.0%
TGCAAGTTTGGTATCATAAC+TGG - chr4_4:43142141-43142160 None:intergenic 35.0%
! ACGGTAGCTCACTATTATTT+TGG + chr4_4:43142178-43142197 Msa0682090:intron 35.0%
AGTATGTTTGGTATTGCAGT+GGG - chr4_4:43142208-43142227 None:intergenic 35.0%
!!! TCTATAGGTTTTTGAGGTTG+AGG + chr4_4:43142431-43142450 Msa0682090:intron 35.0%
!!! CTATAGGTTTTTGAGGTTGA+GGG + chr4_4:43142432-43142451 Msa0682090:intron 35.0%
AACTGACTGTGATGTTTGTA+TGG + chr4_4:43142458-43142477 Msa0682090:intron 35.0%
TTTCTAAACGTGCTATACCT+AGG + chr4_4:43142528-43142547 Msa0682090:intron 35.0%
TTCTAAACGTGCTATACCTA+GGG + chr4_4:43142529-43142548 Msa0682090:intron 35.0%
TAAAAGAGACCAAACAAGAG+AGG + chr4_4:43142585-43142604 Msa0682090:intron 35.0%
AACTGATTGTGATGTCCATA+TGG + chr4_4:43142660-43142679 Msa0682090:intron 35.0%
CATTTATGTTGCATGCCATA+TGG - chr4_4:43142678-43142697 None:intergenic 35.0%
TATAGCTAGGAACAGGAAAA+GGG + chr4_4:43142743-43142762 Msa0682090:intron 35.0%
TACCTATCTCCAACTCATAT+AGG + chr4_4:43142856-43142875 Msa0682090:intron 35.0%
ACCTATCTCCAACTCATATA+GGG + chr4_4:43142857-43142876 Msa0682090:intron 35.0%
!!! GGGGATAGTTTTATATAACC+AGG + chr4_4:43142890-43142909 Msa0682090:intron 35.0%
GGCATAAGAAAAAGAGAAAG+CGG + chr4_4:43142966-43142985 Msa0682090:intron 35.0%
GCATAAGAAAAAGAGAAAGC+GGG + chr4_4:43142967-43142986 Msa0682090:intron 35.0%
! AATAGCTTGTACGAAGCTTA+TGG + chr4_4:43143171-43143190 Msa0682090:intron 35.0%
! TGATTTGTAACTACACAGGA+TGG + chr4_4:43143211-43143230 Msa0682090:intron 35.0%
GATTTGTAACTACACAGGAT+GGG + chr4_4:43143212-43143231 Msa0682090:intron 35.0%
GCAGACTAAACAATTCCTAT+AGG - chr4_4:43143243-43143262 None:intergenic 35.0%
ATAGGAATTGTTTAGTCTGC+AGG + chr4_4:43143243-43143262 Msa0682090:intron 35.0%
CTTTACAATGGCAGCTATAA+TGG + chr4_4:43143359-43143378 Msa0682090:intron 35.0%
CATAACTGAACTTGACTAGT+AGG + chr4_4:43143463-43143482 Msa0682090:intron 35.0%
AATAATTCAGTAAAGGGGCA+GGG + chr4_4:43143523-43143542 Msa0682090:intron 35.0%
TTAACAGGAGGTAATAGTTG+TGG + chr4_4:43143568-43143587 Msa0682090:intron 35.0%
TAACAGGAGGTAATAGTTGT+GGG + chr4_4:43143569-43143588 Msa0682090:intron 35.0%
AGACAGAATAGAGAGGAAAT+TGG + chr4_4:43143617-43143636 Msa0682090:intron 35.0%
TTTAATTGACACCTCCTTTG+TGG + chr4_4:43143787-43143806 Msa0682090:intron 35.0%
AACCTAAAAATGCACCACAA+AGG - chr4_4:43143804-43143823 None:intergenic 35.0%
! GGGGATAAAATTTTACTGAG+CGG + chr4_4:43143831-43143850 Msa0682090:intron 35.0%
!!! CCTCTCTTCCTGTTTTAATT+TGG - chr4_4:43143876-43143895 None:intergenic 35.0%
CCAAATTAAAACAGGAAGAG+AGG + chr4_4:43143873-43143892 Msa0682090:intron 35.0%
ATTGACAAGCTTCATAACCT+CGG - chr4_4:43144214-43144233 None:intergenic 35.0%
TAATGTATTCTGTTTCAGGC+AGG + chr4_4:43144374-43144393 Msa0682090:intron 35.0%
CATAATTAGTGTGACTTGAG+AGG - chr4_4:43144626-43144645 None:intergenic 35.0%
CTCTCAAGTCACACTAATTA+TGG + chr4_4:43144624-43144643 Msa0682090:intron 35.0%
CATATTAGCTATGATGCCAT+TGG - chr4_4:43144949-43144968 None:intergenic 35.0%
GGATCAGTGAAAAATGGAGA+AGG + chr4_4:43140475-43140494 Msa0682090:exon 40.0%
! AACTGTTGCGGATTTGGTTT+CGG - chr4_4:43140518-43140537 None:intergenic 40.0%
CTCAATAACTGTTGCGGATT+TGG - chr4_4:43140524-43140543 None:intergenic 40.0%
CGCAACAGTTATTGAGAGAT+TGG + chr4_4:43140528-43140547 Msa0682090:CDS 40.0%
!! GAATGACATTGGTTCTGCAA+AGG + chr4_4:43140756-43140775 Msa0682090:CDS 40.0%
CGTTGGATGTGTTGTAATAC+TGG + chr4_4:43140888-43140907 Msa0682090:intron 40.0%
AGATCGTGGAAGTTATGCTT+AGG + chr4_4:43140973-43140992 Msa0682090:intron 40.0%
! CCAAGCCTTATCTCATTAAG+TGG - chr4_4:43141202-43141221 None:intergenic 40.0%
CCACTTAATGAGATAAGGCT+TGG + chr4_4:43141199-43141218 Msa0682090:intron 40.0%
! AATCACATGTGTCGATGTGT+CGG + chr4_4:43141232-43141251 Msa0682090:intron 40.0%
!! CCAACACCTGTTGTTTCAAA+AGG - chr4_4:43141464-43141483 None:intergenic 40.0%
!!! CCTTTTGAAACAACAGGTGT+TGG + chr4_4:43141461-43141480 Msa0682090:intron 40.0%
CTGTCTTTCTGCTGAATGTA+AGG + chr4_4:43141509-43141528 Msa0682090:intron 40.0%
TCTTTCTGCTGAATGTAAGG+TGG + chr4_4:43141512-43141531 Msa0682090:intron 40.0%
TGCTGAATGTAAGGTGGAAT+AGG + chr4_4:43141518-43141537 Msa0682090:intron 40.0%
GTGATCGGTCTTAACATGTA+TGG - chr4_4:43141578-43141597 None:intergenic 40.0%
GAATATGCCTTCAATTGGGT+AGG - chr4_4:43141604-43141623 None:intergenic 40.0%
CACCGAATATGCCTTCAATT+GGG - chr4_4:43141608-43141627 None:intergenic 40.0%
ACACCGAATATGCCTTCAAT+TGG - chr4_4:43141609-43141628 None:intergenic 40.0%
!! GTACTGGTGTATCACCTTTT+AGG + chr4_4:43141748-43141767 Msa0682090:intron 40.0%
CTACAGAACTTGTGAGATCT+AGG + chr4_4:43141883-43141902 Msa0682090:CDS 40.0%
GAACCGTCTGCATGAAAATA+AGG + chr4_4:43141914-43141933 Msa0682090:CDS 40.0%
!!! GTGCCTTATTTTCATGCAGA+CGG - chr4_4:43141920-43141939 None:intergenic 40.0%
!!! GAGAAAGTGTTGGTAGGTTT+TGG + chr4_4:43141967-43141986 Msa0682090:intron 40.0%
TGCACCAAGAGGACAAATTA+AGG - chr4_4:43142007-43142026 None:intergenic 40.0%
GATATCAAACATGCACCAAG+AGG - chr4_4:43142018-43142037 None:intergenic 40.0%
GTGCATGTTTGATATCACGA+TGG + chr4_4:43142022-43142041 Msa0682090:intron 40.0%
GAGTATGTTTGGTATTGCAG+TGG - chr4_4:43142209-43142228 None:intergenic 40.0%
ATGAAGCACAAGAGCTAACT+TGG - chr4_4:43142247-43142266 None:intergenic 40.0%
TTATGGGGAAAACTCAACTG+CGG + chr4_4:43142392-43142411 Msa0682090:intron 40.0%
AGAGATTGTGTGCAAAGAGT+GGG - chr4_4:43142500-43142519 None:intergenic 40.0%
TAGAGATTGTGTGCAAAGAG+TGG - chr4_4:43142501-43142520 None:intergenic 40.0%
ACTCTTTGCACACAATCTCT+AGG + chr4_4:43142500-43142519 Msa0682090:intron 40.0%
!! TTGCACACAATCTCTAGGAT+TGG + chr4_4:43142505-43142524 Msa0682090:intron 40.0%
TATACCTAGGGACAGGAAAA+GGG + chr4_4:43142541-43142560 Msa0682090:intron 40.0%
AACATGCTATAGCTAGGAAC+AGG + chr4_4:43142736-43142755 Msa0682090:intron 40.0%
CTATAGCTAGGAACAGGAAA+AGG + chr4_4:43142742-43142761 Msa0682090:intron 40.0%
GAAAAGGGTCTTAGCAAAAG+AGG + chr4_4:43142758-43142777 Msa0682090:intron 40.0%
CAAAAAGAAACCAACCGAGA+GGG + chr4_4:43142786-43142805 Msa0682090:intron 40.0%
AAAAAGAAACCAACCGAGAG+GGG + chr4_4:43142787-43142806 Msa0682090:intron 40.0%
CCTATCTCCAACTCATATAG+GGG + chr4_4:43142858-43142877 Msa0682090:intron 40.0%
TCCAACTCATATAGGGGAAA+GGG + chr4_4:43142864-43142883 Msa0682090:intron 40.0%
TCATATAGGGGAAAGGGAAT+GGG + chr4_4:43142870-43142889 Msa0682090:intron 40.0%
AGGCATTCATTCCTTAGTCA+CGG + chr4_4:43142910-43142929 Msa0682090:intron 40.0%
! AGAAAAAGAGAAAGCGGGTT+AGG + chr4_4:43142972-43142991 Msa0682090:intron 40.0%
TTGCAAGTTGCAAGCAACTT+CGG - chr4_4:43143005-43143024 None:intergenic 40.0%
! TGAGGCATTCTGGGTTTATT+TGG + chr4_4:43143040-43143059 Msa0682090:intron 40.0%
! GAGGCATTCTGGGTTTATTT+GGG + chr4_4:43143041-43143060 Msa0682090:intron 40.0%
CATTCTGGGTTTATTTGGGT+TGG + chr4_4:43143045-43143064 Msa0682090:intron 40.0%
CCAACACTAATAGATATGCC+TGG - chr4_4:43143072-43143091 None:intergenic 40.0%
CCAGGCATATCTATTAGTGT+TGG + chr4_4:43143069-43143088 Msa0682090:intron 40.0%
! TTGGCGCTTATGCATGTTTT+TGG + chr4_4:43143088-43143107 Msa0682090:intron 40.0%
! TGGCGCTTATGCATGTTTTT+GGG + chr4_4:43143089-43143108 Msa0682090:intron 40.0%
GTAGGTAAGAAGCCTTTGAT+AGG + chr4_4:43143481-43143500 Msa0682090:intron 40.0%
TGAATGTGGAAGCCTATCAA+AGG - chr4_4:43143496-43143515 None:intergenic 40.0%
GAATAATTCAGTAAAGGGGC+AGG + chr4_4:43143522-43143541 Msa0682090:intron 40.0%
CTATGCAAGACAGAATAGAG+AGG + chr4_4:43143610-43143629 Msa0682090:intron 40.0%
CTAAAAATGCACCACAAAGG+AGG - chr4_4:43143801-43143820 None:intergenic 40.0%
! CTCCTTTGTGGTGCATTTTT+AGG + chr4_4:43143799-43143818 Msa0682090:intron 40.0%
AGTGAGGGCCAAATTAAAAC+AGG + chr4_4:43143865-43143884 Msa0682090:intron 40.0%
CTGAAAAGGCAGCCAAAATT+AGG - chr4_4:43144155-43144174 None:intergenic 40.0%
AGTACGAGCAATTGCTGAAA+AGG - chr4_4:43144169-43144188 None:intergenic 40.0%
GCTTGTCAATAACCTCATGA+AGG + chr4_4:43144224-43144243 Msa0682090:CDS 40.0%
GTTCAGCAAAGAAATGACCA+AGG + chr4_4:43144275-43144294 Msa0682090:CDS 40.0%
! TGAAGTATGAAGGCATACCT+TGG - chr4_4:43144295-43144314 None:intergenic 40.0%
GCAGGAGAAATGAAGTATGA+AGG - chr4_4:43144305-43144324 None:intergenic 40.0%
TGACTCAGCATTAGATTCTG+AGG + chr4_4:43144427-43144446 Msa0682090:CDS 40.0%
!! TTTTGTTTCCTCACAGCTTC+AGG - chr4_4:43144527-43144546 None:intergenic 40.0%
TGAAGCTGTGAGGAAACAAA+AGG + chr4_4:43144526-43144545 Msa0682090:CDS 40.0%
!! GCAAAAAGAGCCTTGTTAAC+AGG - chr4_4:43144602-43144621 None:intergenic 40.0%
TTCTTCATCATCAACACCCT+CGG - chr4_4:43144682-43144701 None:intergenic 40.0%
GCTGCTAAGAGGAATGACAT+TGG + chr4_4:43140745-43140764 Msa0682090:CDS 45.0%
TTGAGATCTGTCACTGACAC+CGG + chr4_4:43140798-43140817 Msa0682090:intron 45.0%
TGGAGATGAGAAAGTTGCGT+TGG + chr4_4:43140871-43140890 Msa0682090:intron 45.0%
CGACATTAGAGAGAGAGATC+AGG + chr4_4:43140932-43140951 Msa0682090:intron 45.0%
TCGTGGAAGTTATGCTTAGG+TGG + chr4_4:43140976-43140995 Msa0682090:intron 45.0%
GAGGATAGTCAGATCACTAG+AGG + chr4_4:43141056-43141075 Msa0682090:intron 45.0%
! GCACTGACAGTTCTAATCGA+AGG - chr4_4:43141307-43141326 None:intergenic 45.0%
CAATTGGGTAGGACTGTGAT+CGG - chr4_4:43141593-43141612 None:intergenic 45.0%
TCACAGTCCTACCCAATTGA+AGG + chr4_4:43141594-43141613 Msa0682090:intron 45.0%
!! CATATTCGGTGTCAGACATG+TGG + chr4_4:43141617-43141636 Msa0682090:intron 45.0%
GCTCTGACACACACAAAAAC+AGG - chr4_4:43141702-43141721 None:intergenic 45.0%
! ATGCACCTTGGAGAAAGTGT+TGG + chr4_4:43141957-43141976 Msa0682090:CDS 45.0%
!! ACCTTGGAGAAAGTGTTGGT+AGG + chr4_4:43141961-43141980 Msa0682090:intron 45.0%
ACCTACCAACACTTTCTCCA+AGG - chr4_4:43141965-43141984 None:intergenic 45.0%
GTGCATGTTTGGTATCACAG+TGG + chr4_4:43142095-43142114 Msa0682090:intron 45.0%
!! TAACTGGTTTGCCAGACTCA+CGG - chr4_4:43142125-43142144 None:intergenic 45.0%
GAGATTGTGTGCAAAGAGTG+GGG - chr4_4:43142499-43142518 None:intergenic 45.0%
CTATACCTAGGGACAGGAAA+AGG + chr4_4:43142540-43142559 Msa0682090:intron 45.0%
GAAAAGGGTCTTAGCGAAAG+AGG + chr4_4:43142556-43142575 Msa0682090:intron 45.0%
ACTCTTGGCACACAATCTCT+AGG + chr4_4:43142702-43142721 Msa0682090:intron 45.0%
TGGCACACAATCTCTAGGTT+AGG + chr4_4:43142707-43142726 Msa0682090:intron 45.0%
GCAAAAAGAAACCAACCGAG+AGG + chr4_4:43142785-43142804 Msa0682090:intron 45.0%
! CCCCTATATGAGTTGGAGAT+AGG - chr4_4:43142861-43142880 None:intergenic 45.0%
CTCCAACTCATATAGGGGAA+AGG + chr4_4:43142863-43142882 Msa0682090:intron 45.0%
TCCCTTTCCCCTATATGAGT+TGG - chr4_4:43142868-43142887 None:intergenic 45.0%
CTCATATAGGGGAAAGGGAA+TGG + chr4_4:43142869-43142888 Msa0682090:intron 45.0%
CATATAGGGGAAAGGGAATG+GGG + chr4_4:43142871-43142890 Msa0682090:intron 45.0%
GTGACTAAGGAATGAATGCC+TGG - chr4_4:43142911-43142930 None:intergenic 45.0%
GGCATTCATTCCTTAGTCAC+GGG + chr4_4:43142911-43142930 Msa0682090:intron 45.0%
! AGCAGCTGCTTCTAAAGACT+GGG + chr4_4:43142936-43142955 Msa0682090:intron 45.0%
!! GGCGCTTATGCATGTTTTTG+GGG + chr4_4:43143090-43143109 Msa0682090:intron 45.0%
!!! GCGCTTATGCATGTTTTTGG+GGG + chr4_4:43143091-43143110 Msa0682090:intron 45.0%
! GGGGGAGCTTATGAAAGTAT+TGG + chr4_4:43143109-43143128 Msa0682090:intron 45.0%
GCTTCGTACAAGCTATTCTC+TGG - chr4_4:43143168-43143187 None:intergenic 45.0%
GTAATAGTTGTGGGTAGCAG+AGG + chr4_4:43143578-43143597 Msa0682090:intron 45.0%
! GAGAGGAAATTGGAAGTGTG+TGG + chr4_4:43143627-43143646 Msa0682090:intron 45.0%
GGGATCTCAAATAACCAGCA+AGG + chr4_4:43143664-43143683 Msa0682090:intron 45.0%
AGCGGTTTACAAGTCAAGTG+AGG + chr4_4:43143849-43143868 Msa0682090:intron 45.0%
GCGGTTTACAAGTCAAGTGA+GGG + chr4_4:43143850-43143869 Msa0682090:intron 45.0%
AAAACAGGAAGAGAGGGGAA+AGG + chr4_4:43143880-43143899 Msa0682090:intron 45.0%
AAACAGGAAGAGAGGGGAAA+GGG + chr4_4:43143881-43143900 Msa0682090:intron 45.0%
TGGCTAAGTCATGCATTGTC+TGG + chr4_4:43143918-43143937 Msa0682090:intron 45.0%
TTCAGCAATTGCTCGTACTG+TGG + chr4_4:43144170-43144189 Msa0682090:intron 45.0%
TCAGCAATTGCTCGTACTGT+GGG + chr4_4:43144171-43144190 Msa0682090:intron 45.0%
!! ACATCTATCAAAGAGTGCCG+AGG + chr4_4:43144194-43144213 Msa0682090:CDS 45.0%
TGCATAGCAACAGCCATTTC+AGG - chr4_4:43144252-43144271 None:intergenic 45.0%
GTTTCAGGCAGGAGTAATTG+AGG + chr4_4:43144385-43144404 Msa0682090:intron 45.0%
TATATCAGGGCACAATGCAG+AGG - chr4_4:43144856-43144875 None:intergenic 45.0%
!! TTATATATACAAAATAAAAT+GGG - chr4_4:43140450-43140469 None:intergenic 5.0%
!! ATTATATATACAAAATAAAA+TGG - chr4_4:43140451-43140470 None:intergenic 5.0%
!!! TTATTTTGTATATATAATTT+TGG + chr4_4:43140453-43140472 Msa0682090:five_prime_UTR 5.0%
!!! TATTTTGTATATATAATTTT+GGG + chr4_4:43140454-43140473 Msa0682090:five_prime_UTR 5.0%
! AGGTGGGTGTGTTGTTCGTA+AGG + chr4_4:43140286-43140305 Msa0682090:five_prime_UTR 50.0%
TCTGTCACTGACACCGGATA+CGG + chr4_4:43140804-43140823 Msa0682090:intron 50.0%
! GACAGTTCTAATCGAAGGCG+TGG - chr4_4:43141302-43141321 None:intergenic 50.0%
CAACACTAACACGTCAACGC+TGG - chr4_4:43141676-43141695 None:intergenic 50.0%
AACTCAACTGCGGCTGTCTA+TGG + chr4_4:43142402-43142421 Msa0682090:intron 50.0%
AACGTGCTATACCTAGGGAC+AGG + chr4_4:43142534-43142553 Msa0682090:intron 50.0%
! AAGACCCTTTTCCTGTCCCT+AGG - chr4_4:43142548-43142567 None:intergenic 50.0%
AGGGTCTTAGCGAAAGAGGT+AGG + chr4_4:43142560-43142579 Msa0682090:intron 50.0%
GGGTCTTAGCGAAAGAGGTA+GGG + chr4_4:43142561-43142580 Msa0682090:intron 50.0%
TCGCAGAAGCCTCTCTTGTT+TGG - chr4_4:43142597-43142616 None:intergenic 50.0%
! GAGCAGCTGCTTCTAAAGAC+TGG + chr4_4:43142935-43142954 Msa0682090:intron 50.0%
! TTCTAAAGACTGGGCTCCCA+AGG + chr4_4:43142945-43142964 Msa0682090:intron 50.0%
!! GGGTTTATTTGGGTTGGTCC+AGG + chr4_4:43143051-43143070 Msa0682090:intron 50.0%
TGTGTGGTCATGCAGAGACT+AGG + chr4_4:43143643-43143662 Msa0682090:intron 50.0%
GTGTGGTCATGCAGAGACTA+GGG + chr4_4:43143644-43143663 Msa0682090:intron 50.0%
CCATTTCAGGAGCCTTCATG+AGG - chr4_4:43144239-43144258 None:intergenic 50.0%
CCTCATGAAGGCTCCTGAAA+TGG + chr4_4:43144236-43144255 Msa0682090:CDS 50.0%
ACTTCTATGACTACGGGGAG+AGG - chr4_4:43144333-43144352 None:intergenic 50.0%
CACAGCTTCAGGAAGTTGTG+CGG - chr4_4:43144516-43144535 None:intergenic 50.0%
CACAACTTCCTGAAGCTGTG+AGG + chr4_4:43144516-43144535 Msa0682090:CDS 50.0%
AACTGCATGTACCTCCTCTG+CGG - chr4_4:43144573-43144592 None:intergenic 50.0%
CAGGAAGATGCTATAGCCGA+GGG + chr4_4:43144663-43144682 Msa0682090:intron 50.0%
TGACCTGACTTTAGCGAGTC+TGG - chr4_4:43144724-43144743 None:intergenic 50.0%
GTGAGTGTCAGTGCCGTATC+CGG - chr4_4:43140820-43140839 None:intergenic 55.0%
! GTTCTAATCGAAGGCGTGGC+TGG - chr4_4:43141298-43141317 None:intergenic 55.0%
GAGGCTTCTGCGACTGTCTA+TGG + chr4_4:43142604-43142623 Msa0682090:intron 55.0%
TAAGTGCACACAGCCCCTCT+CGG - chr4_4:43142803-43142822 None:intergenic 55.0%
ACAGGATGGGCACGACCTAT+AGG + chr4_4:43143225-43143244 Msa0682090:intron 55.0%
!! AAGAGAGGGGAAAGGGTGCT+TGG + chr4_4:43143888-43143907 Msa0682090:intron 55.0%
!! AGAGAGGGGAAAGGGTGCTT+GGG + chr4_4:43143889-43143908 Msa0682090:intron 55.0%
!! AAAGGGTGCTTGGGGGTAAC+TGG + chr4_4:43143898-43143917 Msa0682090:intron 55.0%
GCAGGAAGATGCTATAGCCG+AGG + chr4_4:43144662-43144681 Msa0682090:intron 55.0%
ACAGTGGCTCACCGTGAGTC+TGG + chr4_4:43142111-43142130 Msa0682090:intron 60.0%
CAGCTGCTCACCCGTGACTA+AGG - chr4_4:43142924-43142943 None:intergenic 60.0%
!! GAGAGGGGAAAGGGTGCTTG+GGG + chr4_4:43143890-43143909 Msa0682090:intron 60.0%
!! AGAGGGGAAAGGGTGCTTGG+GGG + chr4_4:43143891-43143910 Msa0682090:intron 60.0%
!! ACCTGCTCAAAGTGCCGCAG+AGG + chr4_4:43144556-43144575 Msa0682090:CDS 60.0%
TCCTCTGCGGCACTTTGAGC+AGG - chr4_4:43144560-43144579 None:intergenic 60.0%
!! TGCTCAAAGTGCCGCAGAGG+AGG + chr4_4:43144559-43144578 Msa0682090:CDS 60.0%
GGGCCAGACTCGCTAAAGTC+AGG + chr4_4:43144718-43144737 Msa0682090:CDS 60.0%
TGCACACAGCCCCTCTCGGT+TGG - chr4_4:43142799-43142818 None:intergenic 65.0%
CTACGGGGAGAGGAGAGAGC+AGG - chr4_4:43144323-43144342 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 43140249 43145032 43140249 ID=Msa0682090;Name=Msa0682090
chr4_4 mRNA 43140249 43145032 43140249 ID=Msa0682090-mRNA-1;Parent=Msa0682090;Name=Msa0682090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=239|1|1|1|1|1|6|286|227
chr4_4 exon 43140249 43140599 43140249 ID=Msa0682090-mRNA-1:exon:10404;Parent=Msa0682090-mRNA-1
chr4_4 exon 43140701 43140777 43140701 ID=Msa0682090-mRNA-1:exon:10405;Parent=Msa0682090-mRNA-1
chr4_4 exon 43141876 43141978 43141876 ID=Msa0682090-mRNA-1:exon:10406;Parent=Msa0682090-mRNA-1
chr4_4 exon 43144175 43144296 43144175 ID=Msa0682090-mRNA-1:exon:10407;Parent=Msa0682090-mRNA-1
chr4_4 exon 43144392 43144580 43144392 ID=Msa0682090-mRNA-1:exon:10408;Parent=Msa0682090-mRNA-1
chr4_4 exon 43144666 43145032 43144666 ID=Msa0682090-mRNA-1:exon:10409;Parent=Msa0682090-mRNA-1
chr4_4 five_prime_UTR 43140249 43140487 43140249 ID=Msa0682090-mRNA-1:five_prime_utr;Parent=Msa0682090-mRNA-1
chr4_4 CDS 43140488 43140599 43140488 ID=Msa0682090-mRNA-1:cds;Parent=Msa0682090-mRNA-1
chr4_4 CDS 43140701 43140777 43140701 ID=Msa0682090-mRNA-1:cds;Parent=Msa0682090-mRNA-1
chr4_4 CDS 43141876 43141978 43141876 ID=Msa0682090-mRNA-1:cds;Parent=Msa0682090-mRNA-1
chr4_4 CDS 43144175 43144296 43144175 ID=Msa0682090-mRNA-1:cds;Parent=Msa0682090-mRNA-1
chr4_4 CDS 43144392 43144580 43144392 ID=Msa0682090-mRNA-1:cds;Parent=Msa0682090-mRNA-1
chr4_4 CDS 43144666 43144746 43144666 ID=Msa0682090-mRNA-1:cds;Parent=Msa0682090-mRNA-1
chr4_4 three_prime_UTR 43144747 43145032 43144747 ID=Msa0682090-mRNA-1:three_prime_utr;Parent=Msa0682090-mRNA-1
Gene Sequence

>Msa0682090

ATGGAGAAGGTGATGAACATTCTGAAACCGAAACCAAATCCGCAACAGTTATTGAGAGATTGGCAACGTAAGCTTCGACAAGAGTGTCGAAACATTGAACGACAAATTCGCGATATTCAGAGAGAGGAGAAAAATGTGCAGAAAGCTATTAAAGAAGCTGCTAAGAGGAATGACATTGGTTCTGCAAAGGCACTCGCTACAGAACTTGTGAGATCTAGGAAAACAGTGAACCGTCTGCATGAAAATAAGGCACAACTGAACTCAATATCAATGCACCTTGGAGAAAGTGTTGCAATTGCTCGTACTGTGGGACATCTATCAAAGAGTGCCGAGGTTATGAAGCTTGTCAATAACCTCATGAAGGCTCCTGAAATGGCTGTTGCTATGCAAGAGTTCAGCAAAGAAATGACCAAGGCAGGAGTAATTGAGGAGATAGTAAACGATGCTGTTGACTCAGCATTAGATTCTGAGGACATAGAAGATGAAATAGATGAAGAAGTTGATAAAGTCTTAACTGAATTAGCTGGTGAGACAGCCGCACAACTTCCTGAAGCTGTGAGGAAACAAAAGGTGAAGCAACCTGCTCAAAGTGCCGCAGAGGAGGAAGATGCTATAGCCGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATTAGGGCCAGACTCGCTAAAGTCAGGTCATAA

Protein sequence

>Msa0682090

MEKVMNILKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDIGSAKALATELVRSRKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMAVAMQEFSKEMTKAGVIEEIVNDAVDSALDSEDIEDEIDEEVDKVLTELAGETAAQLPEAVRKQKVKQPAQSAAEEEDAIAEGVDDEEEMEEIRARLAKVRS*