AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1296460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296460 MtrunA17_Chr4g0053191 100.000 109 0 0 140 248 51 159 4.30e-79 235
Msa1296460 MtrunA17_Chr4g0053191 100.000 50 0 0 1 50 1 50 2.99e-30 110
Msa1296460 MtrunA17_Chr5g0401831 91.743 109 9 0 140 248 51 159 2.26e-73 220
Msa1296460 MtrunA17_Chr5g0401831 86.000 50 7 0 1 50 1 50 3.50e-26 100
Msa1296460 MtrunA17_Chr4g0060351 47.619 105 53 1 139 243 45 147 2.04e-29 108
Msa1296460 MtrunA17_Chr8g0362321 47.619 105 53 1 139 243 45 147 2.25e-29 108
Msa1296460 MtrunA17_Chr3g0108261 40.566 106 61 1 139 244 42 145 5.92e-24 94.0
Msa1296460 MtrunA17_Chr7g0275361 40.566 106 61 1 139 244 42 145 6.24e-24 94.0
Msa1296460 MtrunA17_Chr1g0154011 40.566 106 61 1 139 244 42 145 1.46e-23 92.8
Msa1296460 MtrunA17_Chr5g0432831 39.623 106 62 1 139 244 42 145 2.99e-23 92.0
Msa1296460 MtrunA17_Chr8g0369311 40.566 106 61 1 139 244 98 201 3.27e-23 93.6
Msa1296460 MtrunA17_Chr4g0037011 39.623 106 62 1 139 244 42 145 1.74e-22 90.1
Msa1296460 MtrunA17_Chr4g0031181 34.545 110 61 2 139 237 46 155 3.62e-17 76.3
Msa1296460 MtrunA17_Chr2g0328001 35.455 110 60 2 139 237 46 155 9.18e-17 75.5
Msa1296460 MtrunA17_Chr2g0316201 41.772 79 44 1 139 217 46 122 1.51e-16 74.3
Msa1296460 MtrunA17_Chr1g0199951 40.000 105 57 3 140 244 84 182 2.12e-16 75.1
Msa1296460 MtrunA17_Chr2g0316211 41.772 79 44 1 139 217 46 122 2.72e-16 73.9
Msa1296460 MtrunA17_Chr4g0038891 39.000 100 58 2 139 238 73 169 1.64e-15 72.4
Msa1296460 MtrunA17_Chr5g0396451 39.000 100 58 2 139 238 73 169 2.12e-15 72.0
Msa1296460 MtrunA17_Chr7g0254701 35.000 100 63 1 140 239 52 149 3.03e-15 73.2
Msa1296460 MtrunA17_Chr8g0378601 36.170 94 58 1 140 233 64 155 1.06e-14 69.7
Msa1296460 MtrunA17_Chr3g0131871 31.132 106 70 2 140 244 45 148 6.28e-14 68.2
Msa1296460 MtrunA17_Chr3g0139901 33.019 106 67 3 139 242 46 149 1.10e-12 63.9
Msa1296460 MtrunA17_Chr8g0348701 32.407 108 69 3 139 244 41 146 1.19e-12 64.7
Msa1296460 MtrunA17_Chr5g0403591 30.928 97 65 1 142 238 72 166 4.38e-12 63.2
Msa1296460 MtrunA17_Chr4g0059291 30.556 108 71 3 139 244 41 146 1.78e-11 61.2
Msa1296460 MtrunA17_Chr8g0376111 37.000 100 51 5 123 214 69 164 7.89e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296460 AT3G57870.1 88.073 109 13 0 140 248 52 160 4.39e-71 215
Msa1296460 AT3G57870.1 89.796 49 5 0 2 50 3 51 1.37e-26 101
Msa1296460 AT2G02760.1 47.619 105 53 1 139 243 45 147 5.07e-29 107
Msa1296460 AT2G02760.2 47.619 105 53 1 139 243 45 147 5.07e-29 107
Msa1296460 AT2G02760.4 47.619 105 53 1 139 243 45 147 5.07e-29 107
Msa1296460 AT2G02760.3 47.619 105 53 1 139 243 45 147 5.07e-29 107
Msa1296460 AT1G14400.1 46.667 105 54 1 139 243 45 147 1.99e-28 105
Msa1296460 AT1G14400.2 46.667 105 54 1 139 243 45 147 1.99e-28 105
Msa1296460 AT5G62540.1 48.485 99 49 1 139 237 45 141 3.93e-28 105
Msa1296460 AT5G53300.2 41.509 106 60 1 139 244 42 145 2.60e-24 95.1
Msa1296460 AT5G53300.4 41.509 106 60 1 139 244 42 145 2.60e-24 95.1
Msa1296460 AT5G53300.1 41.509 106 60 1 139 244 42 145 2.60e-24 95.1
Msa1296460 AT5G41700.5 41.509 106 60 1 139 244 42 145 4.47e-24 94.7
Msa1296460 AT5G41700.2 41.509 106 60 1 139 244 42 145 4.47e-24 94.7
Msa1296460 AT5G41700.1 41.509 106 60 1 139 244 42 145 4.47e-24 94.7
Msa1296460 AT4G27960.1 40.566 106 61 1 139 244 42 145 4.56e-24 94.4
Msa1296460 AT5G41700.4 41.509 106 60 1 139 244 43 146 4.99e-24 94.4
Msa1296460 AT1G64230.2 41.509 106 60 1 139 244 42 145 5.46e-24 94.4
Msa1296460 AT1G64230.1 41.509 106 60 1 139 244 42 145 5.46e-24 94.4
Msa1296460 AT1G64230.3 41.509 106 60 1 139 244 51 154 7.28e-24 94.4
Msa1296460 AT1G64230.5 41.509 106 60 1 139 244 84 187 7.41e-24 95.1
Msa1296460 AT1G64230.4 41.509 106 60 1 139 244 84 187 7.41e-24 95.1
Msa1296460 AT3G08690.2 39.623 106 62 1 139 244 42 145 1.36e-23 93.2
Msa1296460 AT3G08690.1 39.623 106 62 1 139 244 42 145 1.36e-23 93.2
Msa1296460 AT4G27960.2 40.566 106 61 1 139 244 72 175 1.68e-23 94.0
Msa1296460 AT2G16740.1 40.566 106 61 1 139 244 42 145 3.37e-23 92.4
Msa1296460 AT5G56150.1 39.623 106 62 1 139 244 42 145 2.85e-22 89.7
Msa1296460 AT3G08700.2 38.679 106 63 1 139 244 43 146 2.28e-21 87.4
Msa1296460 AT3G08700.1 38.679 106 63 1 139 244 43 146 2.28e-21 87.4
Msa1296460 AT1G50490.1 43.000 100 54 2 139 238 76 172 2.47e-18 80.1
Msa1296460 AT3G46460.3 36.792 106 56 2 143 237 8 113 1.07e-17 77.0
Msa1296460 AT3G46460.2 36.792 106 56 2 143 237 8 113 1.07e-17 77.0
Msa1296460 AT3G46460.1 36.364 110 59 2 139 237 46 155 1.22e-17 78.2
Msa1296460 AT1G36340.2 38.739 111 62 2 128 238 41 145 1.36e-17 77.8
Msa1296460 AT1G36340.1 38.739 111 62 2 128 238 41 145 1.36e-17 77.8
Msa1296460 AT3G20060.2 41.000 100 56 2 139 238 32 128 4.26e-17 75.9
Msa1296460 AT3G20060.1 41.000 100 56 2 139 238 77 173 5.49e-17 76.6
Msa1296460 AT1G16890.1 41.772 79 44 1 139 217 13 89 1.49e-16 73.9
Msa1296460 AT5G59300.1 35.455 110 60 2 139 237 46 155 1.66e-16 75.1
Msa1296460 AT1G78870.4 41.772 79 44 1 139 217 13 89 1.83e-16 73.6
Msa1296460 AT1G16890.2 41.772 79 44 1 139 217 46 122 1.86e-16 74.7
Msa1296460 AT1G78870.2 41.772 79 44 1 139 217 46 122 2.43e-16 74.3
Msa1296460 AT1G16890.3 41.772 79 44 1 139 217 55 131 4.17e-16 73.9
Msa1296460 AT3G55380.1 33.636 110 62 1 139 237 47 156 8.03e-16 73.2
Msa1296460 AT1G78870.1 41.250 80 44 2 139 217 13 90 8.62e-15 69.3
Msa1296460 AT5G50870.1 34.783 115 61 4 140 242 45 157 9.70e-15 70.9
Msa1296460 AT5G05080.2 33.000 100 65 1 140 239 52 149 1.23e-14 71.6
Msa1296460 AT5G05080.3 33.000 100 65 1 140 239 52 149 1.23e-14 71.6
Msa1296460 AT5G05080.1 33.000 100 65 1 140 239 52 149 1.23e-14 71.6
Msa1296460 AT5G05080.4 33.000 100 65 1 140 239 52 149 1.23e-14 71.6
Msa1296460 AT5G41700.3 44.118 68 36 1 139 206 42 107 1.46e-14 69.3
Msa1296460 AT5G50870.2 44.304 79 41 2 140 217 45 121 1.55e-14 70.5
Msa1296460 AT5G53300.3 46.032 63 32 1 139 201 42 102 9.41e-14 66.2
Msa1296460 AT5G56150.2 43.750 64 34 1 139 202 42 103 3.33e-13 64.7
Msa1296460 AT3G24515.1 28.829 111 77 1 139 247 56 166 7.37e-13 67.8
Msa1296460 AT3G24515.3 28.829 111 77 1 139 247 81 191 1.06e-12 67.4
Msa1296460 AT5G25760.1 37.079 89 53 2 139 226 46 132 1.27e-12 64.3
Msa1296460 AT5G25760.2 37.079 89 53 2 139 226 46 132 1.27e-12 64.3
Msa1296460 AT3G13550.1 36.667 90 55 1 140 229 78 165 1.97e-12 64.3
Msa1296460 AT1G63800.1 28.378 148 95 5 106 244 1 146 4.40e-12 63.5
Msa1296460 AT2G18600.1 31.000 100 67 1 139 238 71 168 7.05e-12 62.8
Msa1296460 AT2G18600.2 31.000 100 67 1 139 238 71 168 7.05e-12 62.8
Msa1296460 AT1G63800.2 32.381 105 67 3 142 244 29 131 7.95e-12 62.4
Msa1296460 AT5G41340.1 27.941 136 88 4 117 244 13 146 8.72e-12 62.8
Msa1296460 AT4G36800.2 30.928 97 65 1 142 238 73 167 9.74e-12 62.4
Msa1296460 AT4G36800.1 30.928 97 65 1 142 238 73 167 9.74e-12 62.4
Msa1296460 AT5G41340.2 31.429 105 68 3 142 244 9 111 2.44e-11 60.8

Find 101 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAGGAGCTTCTCATTTC+TGG 0.050335 8_3:-55937479 Msa1296460:three_prime_UTR
GTGCGACGTTAATTGATTTC+TGG 0.193862 8_3:-55937340 Msa1296460:three_prime_UTR
CAGTAATTATCCAATCATTT+AGG 0.256095 8_3:+55937521 None:intergenic
AAGAATTTGCTTCACTGTTA+TGG 0.268750 8_3:+55938270 None:intergenic
ATTTGGCATTGTACTATTCC+TGG 0.294593 8_3:-55942842 Msa1296460:CDS
TATATGCTTGATATAGAAAA+AGG 0.318859 8_3:+55937445 None:intergenic
TTACTAAATTCCTAAATGAT+TGG 0.320105 8_3:-55937531 Msa1296460:three_prime_UTR
GTTCTGTGAATTTGATGATT+TGG 0.321106 8_3:-55942859 Msa1296460:CDS
TCAAGAAACTGTTGTTAGTA+TGG 0.321586 8_3:-55937740 Msa1296460:three_prime_UTR
AACTGTTTCGTTGTGATCAT+TGG 0.339649 8_3:-55937690 Msa1296460:three_prime_UTR
GGAATTTAGTAACAAACATT+AGG 0.354772 8_3:+55937542 None:intergenic
ATAGTAATAGCTGGCCAATA+GGG 0.357597 8_3:+55937421 None:intergenic
TGGGCAGGATCAGCAGGATT+TGG 0.359717 8_3:+55938220 None:intergenic
AATAGTAATAGCTGGCCAAT+AGG 0.372138 8_3:+55937420 None:intergenic
GTCATTTGCTGCAGACTGAT+TGG 0.380732 8_3:-55938555 Msa1296460:intron
GAACCATCAGCTGCTGTCTC+TGG 0.392310 8_3:+55942878 None:intergenic
CCAGACCTGATGAGGCTTCA+AGG 0.394938 8_3:+55939419 None:intergenic
GTTCCTGATGGGTAAACATT+GGG 0.404642 8_3:+55938442 None:intergenic
TATCAAGCATATACCCCTAT+TGG 0.416311 8_3:-55937435 Msa1296460:three_prime_UTR
CACCCCAATGTTTACCCATC+AGG 0.416855 8_3:-55938445 Msa1296460:CDS
TGCAATCTGGTGGGCATGGG+TGG 0.419268 8_3:+55939676 None:intergenic
CCTTGAAGCCTCATCAGGTC+TGG 0.420850 8_3:-55939419 Msa1296460:CDS
TCTGTCTGGGCAGGATCAGC+AGG 0.421284 8_3:+55938214 None:intergenic
TGTACTATTCCTGGAAAAGC+TGG 0.421831 8_3:-55942833 Msa1296460:CDS
TAAGAGAAGGGTCCGGCTAC+AGG 0.434424 8_3:-55937806 Msa1296460:CDS
GCTGTCCTTGAAGCCTCATC+AGG 0.438503 8_3:-55939424 Msa1296460:CDS
TTTCTTAGAGCTGGATTTGT+GGG 0.443276 8_3:+55939761 None:intergenic
GTCAACCAATGAATACTTGT+TGG 0.448552 8_3:-55937580 Msa1296460:three_prime_UTR
CGAAACACAACAACCATGTC+TGG 0.449201 8_3:-55943049 Msa1296460:exon
TAATAGCACTAGACAATACT+TGG 0.451883 8_3:+55937772 None:intergenic
TTAGAGCTGGATTTGTGGGT+CGG 0.454604 8_3:+55939765 None:intergenic
TCATTTGCTGCAGACTGATT+GGG 0.457267 8_3:-55938554 Msa1296460:intron
GGTACTGCTTTGCCTGTAGC+CGG 0.457858 8_3:+55937794 None:intergenic
TCTCACCAACAAGTATTCAT+TGG 0.459089 8_3:+55937575 None:intergenic
CTGCAACACCCAAGTGTACA+TGG 0.464577 8_3:-55939490 Msa1296460:CDS
ATTTCTTAGAGCTGGATTTG+TGG 0.473801 8_3:+55939760 None:intergenic
ATTTGCTTCACTGTTATGGC+TGG 0.475168 8_3:+55938274 None:intergenic
ACAGATGATAGCCTTCTGTC+TGG 0.488538 8_3:+55938200 None:intergenic
CACTTGGGTGTTGCAGTTGG+AGG 0.492932 8_3:+55939497 None:intergenic
GTACTATTCCTGGAAAAGCT+GGG 0.509629 8_3:-55942832 Msa1296460:CDS
TAGAGCTGGATTTGTGGGTC+GGG 0.510929 8_3:+55939766 None:intergenic
GCTTGCCCTCCATGTACACT+TGG 0.511271 8_3:+55939481 None:intergenic
GGTGGGCATGGGTGGGATCG+CGG 0.512724 8_3:+55939684 None:intergenic
TGATGATAAAATTAAATGTA+CGG 0.514757 8_3:+55943218 None:intergenic
CTGCAGACTGATTGGGAGGG+TGG 0.516809 8_3:-55938547 Msa1296460:intron
TCACTGAAGTGTAATGTAAG+TGG 0.517617 8_3:+55938517 None:intergenic
TGAATTATGACTTCTCTCTC+AGG 0.520396 8_3:-55937495 Msa1296460:three_prime_UTR
ATTGGGGTGGAAGAAACCTT+GGG 0.521013 8_3:+55938459 None:intergenic
CAGGATCAGCAGGATTTGGC+TGG 0.522300 8_3:+55938224 None:intergenic
TGATAGCCTTCTGTCTGGGC+AGG 0.527655 8_3:+55938205 None:intergenic
AGGCTATCATCTGTTTATCC+AGG 0.528854 8_3:-55938191 Msa1296460:intron
CACTGAAGTGTAATGTAAGT+GGG 0.531126 8_3:+55938518 None:intergenic
AACAGTGAAGCAAATTCTTG+TGG 0.538738 8_3:-55938266 Msa1296460:CDS
CATTGGGGTGGAAGAAACCT+TGG 0.546367 8_3:+55938458 None:intergenic
ACAGTGAAGCAAATTCTTGT+GGG 0.546550 8_3:-55938265 Msa1296460:CDS
GGTCTGAGCGTGTCCGTGCA+TGG 0.547724 8_3:+55939646 None:intergenic
GTACACTTGGGTGTTGCAGT+TGG 0.549988 8_3:+55939494 None:intergenic
GACAAGCAAACAGTTCCTGA+TGG 0.551868 8_3:+55938430 None:intergenic
GAATTGCAATCTGGTGGGCA+TGG 0.554195 8_3:+55939672 None:intergenic
AGTTCCTGATGGGTAAACAT+TGG 0.555673 8_3:+55938441 None:intergenic
GCAATCTGGTGGGCATGGGT+GGG 0.558165 8_3:+55939677 None:intergenic
CTCTAAAACCAGACCTGATG+AGG 0.562789 8_3:+55939411 None:intergenic
GTTCATTTCATTTCCCCACA+AGG 0.567464 8_3:-55943169 Msa1296460:five_prime_UTR
GTGCAAACCTACGATCCTCA+TGG 0.568788 8_3:+55939624 None:intergenic
GCATGGACAGAATTGCAATC+TGG 0.568841 8_3:+55939663 None:intergenic
AATTGCAATCTGGTGGGCAT+GGG 0.572017 8_3:+55939673 None:intergenic
GCTGATCCTGCCCAGACAGA+AGG 0.585555 8_3:-55938211 Msa1296460:CDS
ACAAGCAAACAGTTCCTGAT+GGG 0.585557 8_3:+55938431 None:intergenic
CAGATGATAGCCTTCTGTCT+GGG 0.588972 8_3:+55938201 None:intergenic
TAGTAATAGCTGGCCAATAG+GGG 0.593025 8_3:+55937422 None:intergenic
TACTATTCCTGGAAAAGCTG+GGG 0.596134 8_3:-55942831 Msa1296460:intron
ATACCACAGAGTATAAGAGA+AGG 0.605787 8_3:-55937819 Msa1296460:CDS
CAGAGTATAAGAGAAGGGTC+CGG 0.605915 8_3:-55937813 Msa1296460:CDS
AAACCAGAGACAGCAGCTGA+TGG 0.609078 8_3:-55942881 Msa1296460:CDS
TTTGCTGCAGACTGATTGGG+AGG 0.609106 8_3:-55938551 Msa1296460:intron
TACCACAGAGTATAAGAGAA+GGG 0.610766 8_3:-55937818 Msa1296460:CDS
ATTGCAATTCTGTCCATGCA+CGG 0.613927 8_3:-55939659 Msa1296460:CDS
TGGACAGAATTGCAATCTGG+TGG 0.618956 8_3:+55939666 None:intergenic
TGTCTGGTATTGCTCGTGGT+CGG 0.620939 8_3:-55943033 Msa1296460:CDS
TGCAAACCTACGATCCTCAT+GGG 0.622978 8_3:+55939625 None:intergenic
GGACAGAATTGCAATCTGGT+GGG 0.628897 8_3:+55939667 None:intergenic
TTGCTGCAGACTGATTGGGA+GGG 0.631895 8_3:-55938550 Msa1296460:intron
CTTGCCCTCCATGTACACTT+GGG 0.636166 8_3:+55939482 None:intergenic
CTCAGACCCATGAGGATCGT+AGG 0.637174 8_3:-55939631 Msa1296460:intron
CTGATGGGTAAACATTGGGG+TGG 0.642707 8_3:+55938446 None:intergenic
ACCATGTCTGGTATTGCTCG+TGG 0.642932 8_3:-55943037 Msa1296460:CDS
TCACTGAGGAACGGAAATCG+TGG 0.651418 8_3:-55943009 Msa1296460:CDS
AACACCCAAGTGTACATGGA+GGG 0.653663 8_3:-55939486 Msa1296460:CDS
ACCACGAGCAATACCAGACA+TGG 0.657443 8_3:+55943036 None:intergenic
TTCCTGATGGGTAAACATTG+GGG 0.660864 8_3:+55938443 None:intergenic
GTGGTCGGCTCACTGAGGAA+CGG 0.667700 8_3:-55943018 Msa1296460:CDS
AATAGCACTAGACAATACTT+GGG 0.667894 8_3:+55937773 None:intergenic
GACCCTTCTCTTATACTCTG+TGG 0.668386 8_3:+55937816 None:intergenic
AGCATGAATAGTGAAAACAT+TGG 0.685925 8_3:+55937648 None:intergenic
TGCTCGTGGTCGGCTCACTG+AGG 0.694537 8_3:-55943023 Msa1296460:CDS
TTGGGGTGGAAGAAACCTTG+GGG 0.713698 8_3:+55938460 None:intergenic
CTGAGGAACGGAAATCGTGG+CGG 0.716867 8_3:-55943006 Msa1296460:CDS
TGGGGTGGAAGAAACCTTGG+GGG 0.732940 8_3:+55938461 None:intergenic
CAACACCCAAGTGTACATGG+AGG 0.740430 8_3:-55939487 Msa1296460:CDS
CGGACACGCTCAGACCCATG+AGG 0.742618 8_3:-55939639 Msa1296460:CDS
TGGGGAAATGAAATGAACGA+AGG 0.766536 8_3:+55943174 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATAAAACTCAAATTT+TGG - chr8_3:55940388-55940407 Msa1296460:intron 10.0%
!! TGATGATAAAATTAAATGTA+CGG + chr8_3:55937366-55937385 None:intergenic 15.0%
!! TAAGTATTCATATTGAATAA+CGG + chr8_3:55938639-55938658 None:intergenic 15.0%
!!! AAAATATATATTGGCAATTT+TGG - chr8_3:55938980-55938999 Msa1296460:intron 15.0%
!! CATAATTAATATAAGTAAAG+AGG + chr8_3:55939118-55939137 None:intergenic 15.0%
!! TTTACTACATTTAATCTATA+AGG + chr8_3:55939621-55939640 None:intergenic 15.0%
!! TTAAATGTAGTAAATGTAAA+AGG - chr8_3:55939627-55939646 Msa1296460:intron 15.0%
!!! AGATTTCTTGTTTTTTTTTT+TGG - chr8_3:55940272-55940291 Msa1296460:intron 15.0%
!!! TTTTTTTTTCCTCTTTTTTT+CGG - chr8_3:55941552-55941571 Msa1296460:intron 15.0%
!! TTGTAAATTGTAGTATTAAT+GGG + chr8_3:55941711-55941730 None:intergenic 15.0%
!! TTTGTAAATTGTAGTATTAA+TGG + chr8_3:55941712-55941731 None:intergenic 15.0%
!! ATTATTATGATGTAAATTAG+AGG + chr8_3:55942001-55942020 None:intergenic 15.0%
!!! AATTGATAAATGAATTCTTT+TGG - chr8_3:55942414-55942433 Msa1296460:intron 15.0%
!!! ATTGATAAATGAATTCTTTT+GGG - chr8_3:55942415-55942434 Msa1296460:intron 15.0%
!!! TTTTTTGTTTGTTGTGATTT+AGG - chr8_3:55937666-55937685 Msa1296460:three_prime_UTR 20.0%
!!! TTTTTGTTTGTTGTGATTTA+GGG - chr8_3:55937667-55937686 Msa1296460:three_prime_UTR 20.0%
!! ATAATTTGAGAAAATGTAAG+TGG - chr8_3:55937976-55937995 Msa1296460:intron 20.0%
!!! AATTTGCTTTATAAGTTAGT+TGG - chr8_3:55938146-55938165 Msa1296460:intron 20.0%
!!! CTTTATTTTATCTTGAGTTA+TGG + chr8_3:55938302-55938321 None:intergenic 20.0%
!! CAAGATAAAATAAAGTTAAG+CGG - chr8_3:55938307-55938326 Msa1296460:intron 20.0%
!!! CTTCTTAAATAAGTTGAAAA+TGG - chr8_3:55938342-55938361 Msa1296460:intron 20.0%
!!! AAACCTTTGTTATGAAATTT+AGG + chr8_3:55938498-55938517 None:intergenic 20.0%
!! AACAATGATATTTGATATTG+TGG - chr8_3:55938523-55938542 Msa1296460:CDS 20.0%
!!! GTTAAACATTTTTAATGATC+TGG - chr8_3:55938747-55938766 Msa1296460:intron 20.0%
!!! TTGTTTTGTTTCTTTTCTAT+TGG - chr8_3:55939328-55939347 Msa1296460:intron 20.0%
!!! TGTTTTGTTTCTTTTCTATT+GGG - chr8_3:55939329-55939348 Msa1296460:intron 20.0%
!! AAAAAACAAGAAATCTCAAA+TGG + chr8_3:55940268-55940287 None:intergenic 20.0%
!!! TTTTTTTTTTTGGACAAAAG+TGG - chr8_3:55940282-55940301 Msa1296460:intron 20.0%
!! ACTTACCAATAATTCTTTAT+TGG + chr8_3:55941024-55941043 None:intergenic 20.0%
!! AAGAGGAAAAAAAAACATTA+GGG + chr8_3:55941547-55941566 None:intergenic 20.0%
!! AAAGAGGAAAAAAAAACATT+AGG + chr8_3:55941548-55941567 None:intergenic 20.0%
!! TGTAAATTGTAGTATTAATG+GGG + chr8_3:55941710-55941729 None:intergenic 20.0%
!! AATAAAGTATATGTAAACCA+GGG - chr8_3:55941767-55941786 Msa1296460:intron 20.0%
!! TTACTAAATTCCTAAATGAT+TGG - chr8_3:55943050-55943069 Msa1296460:exon 20.0%
!! TATATGCTTGATATAGAAAA+AGG + chr8_3:55943139-55943158 None:intergenic 20.0%
!! TTGAAAAAAATAGTAATAGC+TGG + chr8_3:55943172-55943191 None:intergenic 20.0%
!! TTTGAAAAAATAGTAATAGC+TGG + chr8_3:55943212-55943231 None:intergenic 20.0%
!!! TTTTTGTTTGTGCGAAAATT+TGG - chr8_3:55937856-55937875 Msa1296460:intron 25.0%
!!! TTTTGTTTGTGCGAAAATTT+GGG - chr8_3:55937857-55937876 Msa1296460:intron 25.0%
!!! TAGATTTTTTTACTTGTGTC+TGG - chr8_3:55937897-55937916 Msa1296460:intron 25.0%
!!! AGATTTTTTTACTTGTGTCT+GGG - chr8_3:55937898-55937917 Msa1296460:intron 25.0%
!! AACATTATTTAGAGCTTGTT+TGG + chr8_3:55938457-55938476 None:intergenic 25.0%
! ACTCCTAAATTTCATAACAA+AGG - chr8_3:55938492-55938511 Msa1296460:CDS 25.0%
!! GGAGAATTGTTTTCAAATTT+AGG - chr8_3:55938544-55938563 Msa1296460:CDS 25.0%
! ATCATAACCAATCAAATGAA+TGG - chr8_3:55938712-55938731 Msa1296460:intron 25.0%
!! AAACATTTTTAATGATCTGG+TGG - chr8_3:55938750-55938769 Msa1296460:intron 25.0%
! GATAAGTACGAAAAATAAGT+CGG + chr8_3:55938901-55938920 None:intergenic 25.0%
! AATATAAGTAAAGAGGCAAA+AGG + chr8_3:55939111-55939130 None:intergenic 25.0%
! AAAAATACAAAAGGGGAAAT+CGG + chr8_3:55939401-55939420 None:intergenic 25.0%
! TGGAGAAAAAAATACAAAAG+GGG + chr8_3:55939408-55939427 None:intergenic 25.0%
! GTGGAGAAAAAAATACAAAA+GGG + chr8_3:55939409-55939428 None:intergenic 25.0%
!!! CTGTCTCTTTTTTTTTTGAA+CGG + chr8_3:55939483-55939502 None:intergenic 25.0%
!! TTTTAATGTCTTGAGAATAG+AGG - chr8_3:55939525-55939544 Msa1296460:intron 25.0%
! TTTAATGTCTTGAGAATAGA+GGG - chr8_3:55939526-55939545 Msa1296460:intron 25.0%
! TTAGAACATAAAAAACCAAC+AGG + chr8_3:55939687-55939706 None:intergenic 25.0%
! CAACATTTAATTATCCACTA+AGG - chr8_3:55940058-55940077 Msa1296460:intron 25.0%
! AATCTCAAATGGACAAATTT+AGG + chr8_3:55940257-55940276 None:intergenic 25.0%
!! TAGAGTTTTCTAATCCTAAA+AGG - chr8_3:55940767-55940786 Msa1296460:intron 25.0%
! TTAGGAATATTTATGGTGAT+TGG - chr8_3:55941199-55941218 Msa1296460:intron 25.0%
! AATATTTATGGTGATTGGAT+AGG - chr8_3:55941204-55941223 Msa1296460:intron 25.0%
! TTCAATCATATTAGACAAAC+AGG + chr8_3:55941363-55941382 None:intergenic 25.0%
!! TATTTGCAAATGAAGTTTTC+TGG - chr8_3:55941740-55941759 Msa1296460:intron 25.0%
! GAATAAAGTATATGTAAACC+AGG - chr8_3:55941766-55941785 Msa1296460:intron 25.0%
! TGTTAAATACCAACTTCTTT+GGG - chr8_3:55941824-55941843 Msa1296460:intron 25.0%
! ATAAAAAAACCCAAAGAAGT+TGG + chr8_3:55941836-55941855 None:intergenic 25.0%
! ATTCTAAGCAAACTGATTAT+AGG - chr8_3:55942258-55942277 Msa1296460:intron 25.0%
! ATAGGTTCATTATTACATGT+AGG - chr8_3:55942276-55942295 Msa1296460:intron 25.0%
! TAGGTTCATTATTACATGTA+GGG - chr8_3:55942277-55942296 Msa1296460:intron 25.0%
! GAATTCATTTATCAATTACC+TGG + chr8_3:55942411-55942430 None:intergenic 25.0%
! ATTCTAAACCAGATAAAAAC+CGG + chr8_3:55942472-55942491 None:intergenic 25.0%
!!! TTTTATCTGGTTTAGAATCA+AGG - chr8_3:55942474-55942493 Msa1296460:intron 25.0%
! ATCCTAATATCAACAATCAT+CGG + chr8_3:55942561-55942580 None:intergenic 25.0%
!! TCTTCAATAGTCTTTGAAAA+TGG - chr8_3:55942596-55942615 Msa1296460:intron 25.0%
!!! TTTATTTCTAGGTAGGTTAA+TGG - chr8_3:55942682-55942701 Msa1296460:intron 25.0%
!!! TTATTTCTAGGTAGGTTAAT+GGG - chr8_3:55942683-55942702 Msa1296460:intron 25.0%
! GGAATTTAGTAACAAACATT+AGG + chr8_3:55943042-55943061 None:intergenic 25.0%
! CAGTAATTATCCAATCATTT+AGG + chr8_3:55943063-55943082 None:intergenic 25.0%
! TTTGTTCTCTTTTTCCTTGT+GGG + chr8_3:55937429-55937448 None:intergenic 30.0%
! GTTCTGTGAATTTGATGATT+TGG - chr8_3:55937722-55937741 Msa1296460:three_prime_UTR 30.0%
!!! GATTTTTTTACTTGTGTCTG+GGG - chr8_3:55937899-55937918 Msa1296460:intron 30.0%
TGAATGTAACCATATATGTG+TGG - chr8_3:55938000-55938019 Msa1296460:intron 30.0%
!! TGAAGTGTTTGTGCTATTTA+GGG - chr8_3:55938050-55938069 Msa1296460:intron 30.0%
AACACACATGAAACAAAAAG+AGG + chr8_3:55938085-55938104 None:intergenic 30.0%
AAGAGTTTACCATCCAAATA+AGG - chr8_3:55938212-55938231 Msa1296460:CDS 30.0%
TATCCAAACATGACCTTATT+TGG + chr8_3:55938228-55938247 None:intergenic 30.0%
! AAACACTTTTGACACTGTTT+GGG + chr8_3:55938404-55938423 None:intergenic 30.0%
! TAAACACTTTTGACACTGTT+TGG + chr8_3:55938405-55938424 None:intergenic 30.0%
ATGGTGATTAATAGTGAACA+GGG + chr8_3:55938595-55938614 None:intergenic 30.0%
ACTACTTCCATTCATTTGAT+TGG + chr8_3:55938722-55938741 None:intergenic 30.0%
!!! TCTGTTTGTGTTGTGTTTTT+TGG - chr8_3:55939165-55939184 Msa1296460:intron 30.0%
!!! CTGTTTGTGTTGTGTTTTTT+GGG - chr8_3:55939166-55939185 Msa1296460:intron 30.0%
!! TTTGTTTCTTTTCTATTGGG+TGG - chr8_3:55939332-55939351 Msa1296460:intron 30.0%
! TTCTATTGGGTGGTTTTTAA+AGG - chr8_3:55939342-55939361 Msa1296460:intron 30.0%
! TCTATTGGGTGGTTTTTAAA+GGG - chr8_3:55939343-55939362 Msa1296460:intron 30.0%
GGTGGAGAAAAAAATACAAA+AGG + chr8_3:55939410-55939429 None:intergenic 30.0%
TTAATGTCTTGAGAATAGAG+GGG - chr8_3:55939527-55939546 Msa1296460:intron 30.0%
CTACATTTAATCTATAAGGC+TGG + chr8_3:55939617-55939636 None:intergenic 30.0%
TATAATGCTAACAGGGAAAA+TGG + chr8_3:55939710-55939729 None:intergenic 30.0%
! GGGCTTTTACAATTATCAAA+TGG - chr8_3:55939763-55939782 Msa1296460:CDS 30.0%
GTGTTAAATAGCAGTAATAG+TGG - chr8_3:55939859-55939878 Msa1296460:intron 30.0%
TTGTCAATCACAGAAAATAG+CGG + chr8_3:55939980-55939999 None:intergenic 30.0%
GTCAATTTCTAATTCCTTAG+TGG + chr8_3:55940075-55940094 None:intergenic 30.0%
ATCAACAAGAATAGAGCATA+TGG + chr8_3:55940115-55940134 None:intergenic 30.0%
TCTCTTTATTAGAGAACAGT+CGG - chr8_3:55940211-55940230 Msa1296460:intron 30.0%
AACAACTAAGATTCATAGCA+GGG - chr8_3:55940458-55940477 Msa1296460:intron 30.0%
CCACTAATCACATTTATTTG+TGG + chr8_3:55940699-55940718 None:intergenic 30.0%
CCACAAATAAATGTGATTAG+TGG - chr8_3:55940696-55940715 Msa1296460:intron 30.0%
!! AGCTCTAAGAAATCCAAAAA+CGG - chr8_3:55940831-55940850 Msa1296460:intron 30.0%
CCAATAATTCTTTATTGGCA+TGG + chr8_3:55941019-55941038 None:intergenic 30.0%
CCATGCCAATAAAGAATTAT+TGG - chr8_3:55941016-55941035 Msa1296460:intron 30.0%
!!! CTTGATGTTGATTTTACACA+TGG - chr8_3:55941129-55941148 Msa1296460:intron 30.0%
! GGTCTCTTTAGGAATATTTA+TGG - chr8_3:55941192-55941211 Msa1296460:intron 30.0%
!! TTTTATCCTCCAAAGCATTA+GGG - chr8_3:55941400-55941419 Msa1296460:intron 30.0%
ACATTATCTTCACTGAAAGT+CGG + chr8_3:55941460-55941479 None:intergenic 30.0%
TGTAGAATGCTAAGAAAGAA+AGG + chr8_3:55941661-55941680 None:intergenic 30.0%
GTGTTAAATACCAACTTCTT+TGG - chr8_3:55941823-55941842 Msa1296460:intron 30.0%
AGGTTCATTATTACATGTAG+GGG - chr8_3:55942278-55942297 Msa1296460:intron 30.0%
! AAGAATTTGCTTCACTGTTA+TGG + chr8_3:55942314-55942333 None:intergenic 30.0%
TCCTAATATCAACAATCATC+GGG + chr8_3:55942560-55942579 None:intergenic 30.0%
AATGGTGCATTGTGAATAAT+AGG - chr8_3:55942614-55942633 Msa1296460:intron 30.0%
ATGTTTCATATCAGATCACA+AGG + chr8_3:55942648-55942667 None:intergenic 30.0%
TAACCTACCTAGAAATAAAG+AGG + chr8_3:55942681-55942700 None:intergenic 30.0%
!! TATTTCTAGGTAGGTTAATG+GGG - chr8_3:55942684-55942703 Msa1296460:intron 30.0%
AATAGCACTAGACAATACTT+GGG + chr8_3:55942811-55942830 None:intergenic 30.0%
TAATAGCACTAGACAATACT+TGG + chr8_3:55942812-55942831 None:intergenic 30.0%
TCAAGAAACTGTTGTTAGTA+TGG - chr8_3:55942841-55942860 Msa1296460:CDS 30.0%
AGCATGAATAGTGAAAACAT+TGG + chr8_3:55942936-55942955 None:intergenic 30.0%
! TTGTTCTCTTTTTCCTTGTG+GGG + chr8_3:55937428-55937447 None:intergenic 35.0%
! CTTTGTTCTCTTTTTCCTTG+TGG + chr8_3:55937430-55937449 None:intergenic 35.0%
ATTTGGCATTGTACTATTCC+TGG - chr8_3:55937739-55937758 Msa1296460:three_prime_UTR 35.0%
TGTCTTACACCACACATATA+TGG + chr8_3:55938012-55938031 None:intergenic 35.0%
!! CTGAAGTGTTTGTGCTATTT+AGG - chr8_3:55938049-55938068 Msa1296460:intron 35.0%
!! GTTTGTGCTATTTAGGGATA+TGG - chr8_3:55938056-55938075 Msa1296460:intron 35.0%
AAACTCTTTCTTCTCATCCA+TGG + chr8_3:55938200-55938219 None:intergenic 35.0%
! CAAACATGACCTTATTTGGA+TGG + chr8_3:55938224-55938243 None:intergenic 35.0%
CATCCAAATAAGGTCATGTT+TGG - chr8_3:55938222-55938241 Msa1296460:CDS 35.0%
GCTTATGAGTATGTCATAAG+TGG - chr8_3:55938364-55938383 Msa1296460:intron 35.0%
TGGTGATTAATAGTGAACAG+GGG + chr8_3:55938594-55938613 None:intergenic 35.0%
GATGGTGATTAATAGTGAAC+AGG + chr8_3:55938596-55938615 None:intergenic 35.0%
CACTATTAATCACCATCATC+AGG - chr8_3:55938599-55938618 Msa1296460:intron 35.0%
CATCATCAGGATATCTTTGT+GGG - chr8_3:55938612-55938631 Msa1296460:intron 35.0%
ATCATCAGGATATCTTTGTG+GGG - chr8_3:55938613-55938632 Msa1296460:intron 35.0%
TGGTGGTTATGATTGATTGA+TGG - chr8_3:55938767-55938786 Msa1296460:intron 35.0%
TTTCCTTCTCATTCTTGTAC+TGG - chr8_3:55939046-55939065 Msa1296460:intron 35.0%
!! CTATTGGGTGGTTTTTAAAG+GGG - chr8_3:55939344-55939363 Msa1296460:intron 35.0%
AAAAGAGACAGTGTGTCAAT+TGG - chr8_3:55939492-55939511 Msa1296460:CDS 35.0%
TAATGTCTTGAGAATAGAGG+GGG - chr8_3:55939528-55939547 Msa1296460:intron 35.0%
!!! TTTTCCTTTTTCAATGAGCC+AGG + chr8_3:55939566-55939585 None:intergenic 35.0%
GAGGTGATATAATGCTAACA+GGG + chr8_3:55939717-55939736 None:intergenic 35.0%
!!! TGCCTGGGATTTTTTTTTGT+GGG - chr8_3:55939741-55939760 Msa1296460:CDS 35.0%
! AAACAGATAGGTATTGCCTA+AGG - chr8_3:55939796-55939815 Msa1296460:intron 35.0%
TTTAACACTGCATGCAACTT+CGG + chr8_3:55939847-55939866 None:intergenic 35.0%
GATATTGTTCCAGTGTCAAA+TGG - chr8_3:55939915-55939934 Msa1296460:intron 35.0%
! TTTTCTGTGATTGACAACAC+TGG - chr8_3:55939983-55940002 Msa1296460:intron 35.0%
TTTCTGTGATTGACAACACT+GGG - chr8_3:55939984-55940003 Msa1296460:intron 35.0%
ATTGACCCAGTATAGTCAAA+GGG + chr8_3:55940032-55940051 None:intergenic 35.0%
AATTGACCCAGTATAGTCAA+AGG + chr8_3:55940033-55940052 None:intergenic 35.0%
! TATCCTACCAAACCTGATTT+TGG + chr8_3:55940317-55940336 None:intergenic 35.0%
! AAAATCAGGTTTGGTAGGAT+AGG - chr8_3:55940316-55940335 Msa1296460:intron 35.0%
! AAATCAGGTTTGGTAGGATA+GGG - chr8_3:55940317-55940336 Msa1296460:intron 35.0%
GCTATGAATCTTAGTTGTTG+AGG + chr8_3:55940457-55940476 None:intergenic 35.0%
CAACAACTAAGATTCATAGC+AGG - chr8_3:55940457-55940476 Msa1296460:intron 35.0%
ATTCTAGCAAACAGTAAGTG+CGG - chr8_3:55940496-55940515 Msa1296460:intron 35.0%
TCTTGTATACAAAACAGAGC+AGG - chr8_3:55940544-55940563 Msa1296460:intron 35.0%
CTTGTATACAAAACAGAGCA+GGG - chr8_3:55940545-55940564 Msa1296460:intron 35.0%
! AATCCTAAAAGGCGTGTTTA+TGG - chr8_3:55940778-55940797 Msa1296460:intron 35.0%
! ATTCCATAAACACGCCTTTT+AGG + chr8_3:55940784-55940803 None:intergenic 35.0%
TGTTTATGGAATCAGATCAC+AGG - chr8_3:55940792-55940811 Msa1296460:intron 35.0%
TTTCTTAGAGCTGGATTTGT+GGG + chr8_3:55940823-55940842 None:intergenic 35.0%
ATTTCTTAGAGCTGGATTTG+TGG + chr8_3:55940824-55940843 None:intergenic 35.0%
!! GTTTTTGGATTTCTTAGAGC+TGG + chr8_3:55940832-55940851 None:intergenic 35.0%
AGTCATCACGTGAATATCTA+CGG + chr8_3:55940982-55941001 None:intergenic 35.0%
CTGTAAACATGGATGAATCA+AGG + chr8_3:55941064-55941083 None:intergenic 35.0%
!!! GATGTTGATTTTACACATGG+TGG - chr8_3:55941132-55941151 Msa1296460:intron 35.0%
ATTTATGGTGATTGGATAGG+TGG - chr8_3:55941207-55941226 Msa1296460:intron 35.0%
GAACTTCATGCTATTCTTCA+TGG - chr8_3:55941270-55941289 Msa1296460:intron 35.0%
!! CTTTTATCCTCCAAAGCATT+AGG - chr8_3:55941399-55941418 Msa1296460:intron 35.0%
!! TTGTTTGGCTCTTAATTGGA+AGG - chr8_3:55941425-55941444 Msa1296460:intron 35.0%
AGTGAAGATAATGTTTGTGC+TGG - chr8_3:55941466-55941485 Msa1296460:intron 35.0%
AACAGCTGCTTAAACCATTA+GGG + chr8_3:55941586-55941605 None:intergenic 35.0%
AAACAGCTGCTTAAACCATT+AGG + chr8_3:55941587-55941606 None:intergenic 35.0%
CACTGAAGTGTAATGTAAGT+GGG + chr8_3:55942066-55942085 None:intergenic 35.0%
TCACTGAAGTGTAATGTAAG+TGG + chr8_3:55942067-55942086 None:intergenic 35.0%
TTCATTATTACATGTAGGGG+TGG - chr8_3:55942281-55942300 Msa1296460:intron 35.0%
AACAGTGAAGCAAATTCTTG+TGG - chr8_3:55942315-55942334 Msa1296460:intron 35.0%
ACAGTGAAGCAAATTCTTGT+GGG - chr8_3:55942316-55942335 Msa1296460:intron 35.0%
! CAAAGTGTTCATTCATGTAC+TGG - chr8_3:55942526-55942545 Msa1296460:intron 35.0%
TCCCGATGATTGTTGATATT+AGG - chr8_3:55942556-55942575 Msa1296460:intron 35.0%
! ACAGCTACCTCTTTATTTCT+AGG - chr8_3:55942671-55942690 Msa1296460:intron 35.0%
!! CTACCTCTTTATTTCTAGGT+AGG - chr8_3:55942675-55942694 Msa1296460:intron 35.0%
ACGTTGCAAAGATTATTTCG+CGG + chr8_3:55942727-55942746 None:intergenic 35.0%
!! TGCAACGTAATACTTTTTGC+AGG - chr8_3:55942739-55942758 Msa1296460:intron 35.0%
ATACCACAGAGTATAAGAGA+AGG - chr8_3:55942762-55942781 Msa1296460:intron 35.0%
TACCACAGAGTATAAGAGAA+GGG - chr8_3:55942763-55942782 Msa1296460:intron 35.0%
AACTGTTTCGTTGTGATCAT+TGG - chr8_3:55942891-55942910 Msa1296460:CDS 35.0%
GTCAACCAATGAATACTTGT+TGG - chr8_3:55943001-55943020 Msa1296460:CDS 35.0%
TCTCACCAACAAGTATTCAT+TGG + chr8_3:55943009-55943028 None:intergenic 35.0%
TGAATTATGACTTCTCTCTC+AGG - chr8_3:55943086-55943105 Msa1296460:five_prime_UTR 35.0%
TATCAAGCATATACCCCTAT+TGG - chr8_3:55943146-55943165 Msa1296460:five_prime_UTR 35.0%
ATAGTAATAGCTGGCCAATA+GGG + chr8_3:55943163-55943182 None:intergenic 35.0%
AATAGTAATAGCTGGCCAAT+AGG + chr8_3:55943164-55943183 None:intergenic 35.0%
TTTCAAGCATATACCCCTAT+TGG - chr8_3:55943186-55943205 Msa1296460:five_prime_UTR 35.0%
ATAGTAATAGCTGGCCAATA+GGG + chr8_3:55943163-55943182 None:intergenic 35.0%
AATAGTAATAGCTGGCCAAT+AGG + chr8_3:55943164-55943183 None:intergenic 35.0%
TGGGGAAATGAAATGAACGA+AGG + chr8_3:55937410-55937429 None:intergenic 40.0%
GTTCATTTCATTTCCCCACA+AGG - chr8_3:55937412-55937431 Msa1296460:intron 40.0%
ACAGTGATTGTACTCACATG+AGG + chr8_3:55937610-55937629 None:intergenic 40.0%
TGTACTATTCCTGGAAAAGC+TGG - chr8_3:55937748-55937767 Msa1296460:three_prime_UTR 40.0%
GTACTATTCCTGGAAAAGCT+GGG - chr8_3:55937749-55937768 Msa1296460:three_prime_UTR 40.0%
TACTATTCCTGGAAAAGCTG+GGG - chr8_3:55937750-55937769 Msa1296460:three_prime_UTR 40.0%
!! TTTTTACTTGTGTCTGGGGT+AGG - chr8_3:55937903-55937922 Msa1296460:intron 40.0%
!! TTTTACTTGTGTCTGGGGTA+GGG - chr8_3:55937904-55937923 Msa1296460:intron 40.0%
GTATTGTATGCATCCATCCA+TGG - chr8_3:55938180-55938199 Msa1296460:intron 40.0%
TCTTTCTTCTCATCCATGGA+TGG + chr8_3:55938196-55938215 None:intergenic 40.0%
GGTGATTAATAGTGAACAGG+GGG + chr8_3:55938593-55938612 None:intergenic 40.0%
CCACAAAGATATCCTGATGA+TGG + chr8_3:55938614-55938633 None:intergenic 40.0%
CCATCATCAGGATATCTTTG+TGG - chr8_3:55938611-55938630 Msa1296460:intron 40.0%
CAACCAGTACAAGAATGAGA+AGG + chr8_3:55939052-55939071 None:intergenic 40.0%
!! CAGTGTGTCAATTGGTTCTA+AGG - chr8_3:55939500-55939519 Msa1296460:CDS 40.0%
AATGTCTTGAGAATAGAGGG+GGG - chr8_3:55939529-55939548 Msa1296460:intron 40.0%
CGAGGTGATATAATGCTAAC+AGG + chr8_3:55939718-55939737 None:intergenic 40.0%
!!! CTGCCTGGGATTTTTTTTTG+TGG - chr8_3:55939740-55939759 Msa1296460:CDS 40.0%
!!! GCCTGGGATTTTTTTTTGTG+GGG - chr8_3:55939742-55939761 Msa1296460:CDS 40.0%
!!! CCTGGGATTTTTTTTTGTGG+GGG - chr8_3:55939743-55939762 Msa1296460:CDS 40.0%
GGTGTGTACTTGAAACAGAT+AGG - chr8_3:55939784-55939803 Msa1296460:intron 40.0%
ATTGTTCCAGTGTCAAATGG+CGG - chr8_3:55939918-55939937 Msa1296460:intron 40.0%
AGTATAGTCAAAGGGCTCAA+AGG + chr8_3:55940024-55940043 None:intergenic 40.0%
TTTGAGCCCTTTGACTATAC+TGG - chr8_3:55940023-55940042 Msa1296460:intron 40.0%
TTGAGCCCTTTGACTATACT+GGG - chr8_3:55940024-55940043 Msa1296460:intron 40.0%
AGAAACTGCTTCTTTGTGAG+AGG + chr8_3:55940138-55940157 None:intergenic 40.0%
! CGTTGAGTTTTGCTCTGTTT+TGG + chr8_3:55940634-55940653 None:intergenic 40.0%
AGCAAAACTCAACGTGAATG+AGG - chr8_3:55940640-55940659 Msa1296460:intron 40.0%
GCAAAACTCAACGTGAATGA+GGG - chr8_3:55940641-55940660 Msa1296460:intron 40.0%
!! GATTCTGTCACTTCCGTTTT+TGG + chr8_3:55940847-55940866 None:intergenic 40.0%
!! GCAAGATTCCACCGTTTTTA+TGG - chr8_3:55940867-55940886 Msa1296460:intron 40.0%
ATTGCAATTCTGTCCATGCA+CGG - chr8_3:55940922-55940941 Msa1296460:intron 40.0%
ATGGATGAATCAAGGAAGTG+AGG + chr8_3:55941056-55941075 None:intergenic 40.0%
!!! CTGGTTTTAGAGGTCTCTTT+AGG - chr8_3:55941181-55941200 Msa1296460:intron 40.0%
CAAACAAGTCCCTAATGCTT+TGG + chr8_3:55941412-55941431 None:intergenic 40.0%
! CAAAGCATTAGGGACTTGTT+TGG - chr8_3:55941410-55941429 Msa1296460:intron 40.0%
!! GGACTTGTTTGGCTCTTAAT+TGG - chr8_3:55941421-55941440 Msa1296460:intron 40.0%
TCTTCACTGAAAGTCGGATA+AGG + chr8_3:55941454-55941473 None:intergenic 40.0%
!! TAATGTTTGTGCTGGCTTCT+TGG - chr8_3:55941474-55941493 Msa1296460:intron 40.0%
ATCTTGAGAAACACCCAACT+TGG + chr8_3:55941500-55941519 None:intergenic 40.0%
GGGATGTTACCGAAAAAAAG+AGG + chr8_3:55941564-55941583 None:intergenic 40.0%
ACAGCTGCTTAAACCATTAG+GGG + chr8_3:55941585-55941604 None:intergenic 40.0%
CTGTTTGATTGCAGATCCAT+GGG - chr8_3:55941601-55941620 Msa1296460:intron 40.0%
! TATATGTAAACCAGGGCACT+TGG - chr8_3:55941774-55941793 Msa1296460:intron 40.0%
TTCAATCCTAGCAACGAAGA+CGG + chr8_3:55941942-55941961 None:intergenic 40.0%
! TCATTTGCTGCAGACTGATT+GGG - chr8_3:55942027-55942046 Msa1296460:intron 40.0%
! TTCCTGATGGGTAAACATTG+GGG + chr8_3:55942141-55942160 None:intergenic 40.0%
! GTTCCTGATGGGTAAACATT+GGG + chr8_3:55942142-55942161 None:intergenic 40.0%
! AGTTCCTGATGGGTAAACAT+TGG + chr8_3:55942143-55942162 None:intergenic 40.0%
ACAAGCAAACAGTTCCTGAT+GGG + chr8_3:55942153-55942172 None:intergenic 40.0%
ATTTGCTTCACTGTTATGGC+TGG + chr8_3:55942310-55942329 None:intergenic 40.0%
AGGCTATCATCTGTTTATCC+AGG - chr8_3:55942390-55942409 Msa1296460:intron 40.0%
!! TTGCTTGTCAAAGTGGGTTT+TGG + chr8_3:55942444-55942463 None:intergenic 40.0%
AAACCAGATAAAAACCGGTC+TGG + chr8_3:55942467-55942486 None:intergenic 40.0%
!! GTTTAGAATCAAGGCACTGT+AGG - chr8_3:55942483-55942502 Msa1296460:intron 40.0%
TAGTAATAGCTGGCCAATAG+GGG + chr8_3:55943162-55943181 None:intergenic 40.0%
TAGTAATAGCTGGCCAATAG+GGG + chr8_3:55943162-55943181 None:intergenic 40.0%
! GTGCGACGTTAATTGATTTC+TGG - chr8_3:55943241-55943260 Msa1296460:five_prime_UTR 40.0%
CGAAACACAACAACCATGTC+TGG - chr8_3:55937532-55937551 Msa1296460:three_prime_UTR 45.0%
! AAACAAACCCCAGCTTTTCC+AGG + chr8_3:55937760-55937779 None:intergenic 45.0%
CGTCTTCGGCAGTATTTCAT+AGG + chr8_3:55937941-55937960 None:intergenic 45.0%
GCACAAACACTTCAGATCGA+AGG + chr8_3:55938044-55938063 None:intergenic 45.0%
GTGAACAGGGGGTAACTAAA+CGG + chr8_3:55938582-55938601 None:intergenic 45.0%
AAGAGGCAAAAGGACATCGA+AGG + chr8_3:55939101-55939120 None:intergenic 45.0%
! AGGAGGTTTTCTGTTGTGGT+TGG - chr8_3:55939219-55939238 Msa1296460:intron 45.0%
TGTGCCTGGCTCATTGAAAA+AGG - chr8_3:55939559-55939578 Msa1296460:intron 45.0%
! TAAGGCTGGTTAGTGCAAGA+TGG + chr8_3:55939603-55939622 None:intergenic 45.0%
!! GTTTGCTTGCTGTGAAGAGT+CGG - chr8_3:55939649-55939668 Msa1296460:CDS 45.0%
CCCCCACAAAAAAAAATCCC+AGG + chr8_3:55939746-55939765 None:intergenic 45.0%
TTCGGTAAGACTAGTGCATC+GGG + chr8_3:55939829-55939848 None:intergenic 45.0%
CTTCGGTAAGACTAGTGCAT+CGG + chr8_3:55939830-55939849 None:intergenic 45.0%
! GTGGCACAATAGTGCTATTG+CGG - chr8_3:55939878-55939897 Msa1296460:intron 45.0%
TCAAAGGGCTCAAAGGATTG+GGG + chr8_3:55940017-55940036 None:intergenic 45.0%
GTCAAAGGGCTCAAAGGATT+GGG + chr8_3:55940018-55940037 None:intergenic 45.0%
AGTCAAAGGGCTCAAAGGAT+TGG + chr8_3:55940019-55940038 None:intergenic 45.0%
TGTGCCACCAAAATCAGGTT+TGG - chr8_3:55940307-55940326 Msa1296460:intron 45.0%
! CCTACCAAACCTGATTTTGG+TGG + chr8_3:55940314-55940333 None:intergenic 45.0%
! CCACCAAAATCAGGTTTGGT+AGG - chr8_3:55940311-55940330 Msa1296460:intron 45.0%
GTCCAACTTCTTGTCTCACA+CGG + chr8_3:55940670-55940689 None:intergenic 45.0%
GTGTGAGACAAGAAGTTGGA+CGG - chr8_3:55940669-55940688 Msa1296460:intron 45.0%
TTAGAGCTGGATTTGTGGGT+CGG + chr8_3:55940819-55940838 None:intergenic 45.0%
GCGCAAAACCATAAAAACGG+TGG + chr8_3:55940878-55940897 None:intergenic 45.0%
GCGGCGCAAAACCATAAAAA+CGG + chr8_3:55940881-55940900 None:intergenic 45.0%
! AATTGCAATCTGGTGGGCAT+GGG + chr8_3:55940911-55940930 None:intergenic 45.0%
GGACAGAATTGCAATCTGGT+GGG + chr8_3:55940917-55940936 None:intergenic 45.0%
TGGACAGAATTGCAATCTGG+TGG + chr8_3:55940918-55940937 None:intergenic 45.0%
GCATGGACAGAATTGCAATC+TGG + chr8_3:55940921-55940940 None:intergenic 45.0%
TGCAAACCTACGATCCTCAT+GGG + chr8_3:55940959-55940978 None:intergenic 45.0%
AACACCCAAGTGTACATGGA+GGG - chr8_3:55941095-55941114 Msa1296460:intron 45.0%
!! CTCTAAAACCAGACCTGATG+AGG + chr8_3:55941173-55941192 None:intergenic 45.0%
!!! CTCATCAGGTCTGGTTTTAG+AGG - chr8_3:55941171-55941190 Msa1296460:intron 45.0%
TGATTGGATAGGTGGCTTAG+TGG - chr8_3:55941215-55941234 Msa1296460:intron 45.0%
GATTGGATAGGTGGCTTAGT+GGG - chr8_3:55941216-55941235 Msa1296460:intron 45.0%
TTCATGGTCTGACTGTTGCT+TGG - chr8_3:55941286-55941305 Msa1296460:intron 45.0%
! TCATGGTCTGACTGTTGCTT+GGG - chr8_3:55941287-55941306 Msa1296460:intron 45.0%
! TCTGACTGTTGCTTGGGATT+TGG - chr8_3:55941293-55941312 Msa1296460:intron 45.0%
ACAAGTCCCTAATGCTTTGG+AGG + chr8_3:55941409-55941428 None:intergenic 45.0%
TTTCGGTAACATCCCCCTAA+TGG - chr8_3:55941569-55941588 Msa1296460:intron 45.0%
CAGCTGCTTAAACCATTAGG+GGG + chr8_3:55941584-55941603 None:intergenic 45.0%
GCTGTTTGATTGCAGATCCA+TGG - chr8_3:55941600-55941619 Msa1296460:intron 45.0%
GTGTATGTTTCCTGCACTCT+TGG - chr8_3:55941623-55941642 Msa1296460:intron 45.0%
TTCCTGCACTCTTGGTTTCT+TGG - chr8_3:55941631-55941650 Msa1296460:intron 45.0%
! AACCAAGAAACCAAGAGTGC+AGG + chr8_3:55941636-55941655 None:intergenic 45.0%
! GTCATTTGCTGCAGACTGAT+TGG - chr8_3:55942026-55942045 Msa1296460:intron 45.0%
TTGGGGGAATTTACACTTCG+GGG + chr8_3:55942107-55942126 None:intergenic 45.0%
CTTGGGGGAATTTACACTTC+GGG + chr8_3:55942108-55942127 None:intergenic 45.0%
CCTTGGGGGAATTTACACTT+CGG + chr8_3:55942109-55942128 None:intergenic 45.0%
ATTGGGGTGGAAGAAACCTT+GGG + chr8_3:55942125-55942144 None:intergenic 45.0%
GACAAGCAAACAGTTCCTGA+TGG + chr8_3:55942154-55942173 None:intergenic 45.0%
CAGATGATAGCCTTCTGTCT+GGG + chr8_3:55942383-55942402 None:intergenic 45.0%
ACAGATGATAGCCTTCTGTC+TGG + chr8_3:55942384-55942403 None:intergenic 45.0%
GTCTGGTTGCTTGTCAAAGT+GGG + chr8_3:55942450-55942469 None:intergenic 45.0%
ACTTTGACAAGCAACCAGAC+CGG - chr8_3:55942450-55942469 Msa1296460:intron 45.0%
!! CAACCAGACCGGTTTTTATC+TGG - chr8_3:55942461-55942480 Msa1296460:intron 45.0%
GACCCTTCTCTTATACTCTG+TGG + chr8_3:55942768-55942787 None:intergenic 45.0%
CAGAGTATAAGAGAAGGGTC+CGG - chr8_3:55942768-55942787 Msa1296460:intron 45.0%
TCTCAGGAGCTTCTCATTTC+TGG - chr8_3:55943102-55943121 Msa1296460:five_prime_UTR 45.0%
!! TAAAATATGAAAATATATAT+TGG - chr8_3:55938971-55938990 Msa1296460:intron 5.0%
ACCATGTCTGGTATTGCTCG+TGG - chr8_3:55937544-55937563 Msa1296460:three_prime_UTR 50.0%
ACCACGAGCAATACCAGACA+TGG + chr8_3:55937548-55937567 None:intergenic 50.0%
TGTCTGGTATTGCTCGTGGT+CGG - chr8_3:55937548-55937567 Msa1296460:three_prime_UTR 50.0%
TCACTGAGGAACGGAAATCG+TGG - chr8_3:55937572-55937591 Msa1296460:three_prime_UTR 50.0%
AAACCAGAGACAGCAGCTGA+TGG - chr8_3:55937700-55937719 Msa1296460:three_prime_UTR 50.0%
GTCAGTGTCAGTGTCGTCTT+CGG + chr8_3:55937955-55937974 None:intergenic 50.0%
! CTTCAGATCGAAGGCGTATC+AGG + chr8_3:55938035-55938054 None:intergenic 50.0%
AACAGGGGGTAACTAAACGG+TGG + chr8_3:55938579-55938598 None:intergenic 50.0%
AACAGAAAACCTCCTAGCGC+TGG + chr8_3:55939214-55939233 None:intergenic 50.0%
! CGCTAGGAGGTTTTCTGTTG+TGG - chr8_3:55939215-55939234 Msa1296460:intron 50.0%
!!! TTGCTTTTGGGTGTTGACGC+AGG - chr8_3:55939259-55939278 Msa1296460:intron 50.0%
!!! TGCTTTTGGGTGTTGACGCA+GGG - chr8_3:55939260-55939279 Msa1296460:intron 50.0%
! AAGGGGTTTTTGTTCGAGCC+TGG - chr8_3:55939361-55939380 Msa1296460:intron 50.0%
GTTCGAGCCTGGTGATTGAT+TGG - chr8_3:55939372-55939391 Msa1296460:intron 50.0%
TCGGTTGCCAATCAATCACC+AGG + chr8_3:55939382-55939401 None:intergenic 50.0%
!! CGAGAAGCACTAACAAGCTC+GGG + chr8_3:55939431-55939450 None:intergenic 50.0%
!! GCGAGAAGCACTAACAAGCT+CGG + chr8_3:55939432-55939451 None:intergenic 50.0%
! GCTTGTTAGTGCTTCTCGCA+CGG - chr8_3:55939433-55939452 Msa1296460:CDS 50.0%
CTTGTTAGTGCTTCTCGCAC+GGG - chr8_3:55939434-55939453 Msa1296460:CDS 50.0%
CGGAGAAACTGACAACCTGT+TGG - chr8_3:55939669-55939688 Msa1296460:CDS 50.0%
TTATATCACCTCGCTCTGCC+TGG - chr8_3:55939725-55939744 Msa1296460:CDS 50.0%
TATATCACCTCGCTCTGCCT+GGG - chr8_3:55939726-55939745 Msa1296460:CDS 50.0%
AAAAAATCCCAGGCAGAGCG+AGG + chr8_3:55939736-55939755 None:intergenic 50.0%
TCGGTAAGACTAGTGCATCG+GGG + chr8_3:55939828-55939847 None:intergenic 50.0%
ATAGCACCGCCATTTGACAC+TGG + chr8_3:55939927-55939946 None:intergenic 50.0%
TGGACTGTGCCACCAAAATC+AGG - chr8_3:55940302-55940321 Msa1296460:intron 50.0%
GTCCGTGTGAGACAAGAAGT+TGG - chr8_3:55940665-55940684 Msa1296460:intron 50.0%
GAACACTTCACTAGCTGCGA+CGG + chr8_3:55940734-55940753 None:intergenic 50.0%
TAGAGCTGGATTTGTGGGTC+GGG + chr8_3:55940818-55940837 None:intergenic 50.0%
! GAATTGCAATCTGGTGGGCA+TGG + chr8_3:55940912-55940931 None:intergenic 50.0%
GTGCAAACCTACGATCCTCA+TGG + chr8_3:55940960-55940979 None:intergenic 50.0%
GCAGTTGGAGGCTGTAAACA+TGG + chr8_3:55941075-55941094 None:intergenic 50.0%
! GTACACTTGGGTGTTGCAGT+TGG + chr8_3:55941090-55941109 None:intergenic 50.0%
CTGCAACACCCAAGTGTACA+TGG - chr8_3:55941091-55941110 Msa1296460:intron 50.0%
CAACACCCAAGTGTACATGG+AGG - chr8_3:55941094-55941113 Msa1296460:intron 50.0%
CTTGCCCTCCATGTACACTT+GGG + chr8_3:55941102-55941121 None:intergenic 50.0%
GGTGGCTTAGTGGGATTCTT+TGG - chr8_3:55941225-55941244 Msa1296460:intron 50.0%
ATAGCATGAAGTTCCGCGTG+AGG + chr8_3:55941264-55941283 None:intergenic 50.0%
GTGCAGGAAACATACACCCA+TGG + chr8_3:55941620-55941639 None:intergenic 50.0%
TTACTTCAAGCCAAGTGCCC+TGG + chr8_3:55941787-55941806 None:intergenic 50.0%
AGCAACGAAGACGGAGAACA+AGG + chr8_3:55941933-55941952 None:intergenic 50.0%
TGTTCTCCGTCTTCGTTGCT+AGG - chr8_3:55941933-55941952 Msa1296460:intron 50.0%
TTTGCTGCAGACTGATTGGG+AGG - chr8_3:55942030-55942049 Msa1296460:intron 50.0%
TTGCTGCAGACTGATTGGGA+GGG - chr8_3:55942031-55942050 Msa1296460:intron 50.0%
TGGGGGAATTTACACTTCGG+GGG + chr8_3:55942106-55942125 None:intergenic 50.0%
CCGAAGTGTAAATTCCCCCA+AGG - chr8_3:55942106-55942125 Msa1296460:intron 50.0%
TTGGGGTGGAAGAAACCTTG+GGG + chr8_3:55942124-55942143 None:intergenic 50.0%
CATTGGGGTGGAAGAAACCT+TGG + chr8_3:55942126-55942145 None:intergenic 50.0%
! CTGATGGGTAAACATTGGGG+TGG + chr8_3:55942138-55942157 None:intergenic 50.0%
CACCCCAATGTTTACCCATC+AGG - chr8_3:55942136-55942155 Msa1296460:intron 50.0%
GGTCTGGTTGCTTGTCAAAG+TGG + chr8_3:55942451-55942470 None:intergenic 50.0%
CTGAGGAACGGAAATCGTGG+CGG - chr8_3:55937575-55937594 Msa1296460:three_prime_UTR 55.0%
GAACCATCAGCTGCTGTCTC+TGG + chr8_3:55937706-55937725 None:intergenic 55.0%
! ACTTGTGTCTGGGGTAGGGT+TGG - chr8_3:55937908-55937927 Msa1296460:intron 55.0%
! CTTGTGTCTGGGGTAGGGTT+GGG - chr8_3:55937909-55937928 Msa1296460:intron 55.0%
! TTGTGTCTGGGGTAGGGTTG+GGG - chr8_3:55937910-55937929 Msa1296460:intron 55.0%
! TGTGGTTGGTTGCAGCTGTC+TGG - chr8_3:55939233-55939252 Msa1296460:intron 55.0%
! GTGGTTGGTTGCAGCTGTCT+GGG - chr8_3:55939234-55939253 Msa1296460:intron 55.0%
! TGGTTGGTTGCAGCTGTCTG+GGG - chr8_3:55939235-55939254 Msa1296460:intron 55.0%
!! AGCTGTCTGGGGGTTGCTTT+TGG - chr8_3:55939246-55939265 Msa1296460:intron 55.0%
!!! GCTGTCTGGGGGTTGCTTTT+GGG - chr8_3:55939247-55939266 Msa1296460:intron 55.0%
!!! GCTTTTGGGTGTTGACGCAG+GGG - chr8_3:55939261-55939280 Msa1296460:intron 55.0%
! GAAGCACTAACAAGCTCGGG+TGG + chr8_3:55939428-55939447 None:intergenic 55.0%
CTCAGACCCATGAGGATCGT+AGG - chr8_3:55940950-55940969 Msa1296460:intron 55.0%
! CACTTGGGTGTTGCAGTTGG+AGG + chr8_3:55941087-55941106 None:intergenic 55.0%
GCTTGCCCTCCATGTACACT+TGG + chr8_3:55941103-55941122 None:intergenic 55.0%
GCTGTCCTTGAAGCCTCATC+AGG - chr8_3:55941157-55941176 Msa1296460:intron 55.0%
CCAGACCTGATGAGGCTTCA+AGG + chr8_3:55941165-55941184 None:intergenic 55.0%
CCTTGAAGCCTCATCAGGTC+TGG - chr8_3:55941162-55941181 Msa1296460:intron 55.0%
AAGTTCCGCGTGAGGACTAG+AGG + chr8_3:55941256-55941275 None:intergenic 55.0%
!! TGCTGGCTTCTTGGCCAAGT+TGG - chr8_3:55941483-55941502 Msa1296460:intron 55.0%
! GCTGGCTTCTTGGCCAAGTT+GGG - chr8_3:55941484-55941503 Msa1296460:intron 55.0%
!! TACACTTCGGGGGCTTGCTA+GGG + chr8_3:55942096-55942115 None:intergenic 55.0%
! TTACACTTCGGGGGCTTGCT+AGG + chr8_3:55942097-55942116 None:intergenic 55.0%
TGGGGTGGAAGAAACCTTGG+GGG + chr8_3:55942123-55942142 None:intergenic 55.0%
CAGGATCAGCAGGATTTGGC+TGG + chr8_3:55942360-55942379 None:intergenic 55.0%
TGGGCAGGATCAGCAGGATT+TGG + chr8_3:55942364-55942383 None:intergenic 55.0%
TGATAGCCTTCTGTCTGGGC+AGG + chr8_3:55942379-55942398 None:intergenic 55.0%
!! CAAGGCACTGTAGGTCGACA+TGG - chr8_3:55942492-55942511 Msa1296460:intron 55.0%
TAAGAGAAGGGTCCGGCTAC+AGG - chr8_3:55942775-55942794 Msa1296460:intron 55.0%
GGTACTGCTTTGCCTGTAGC+CGG + chr8_3:55942790-55942809 None:intergenic 55.0%
! GTGGTCGGCTCACTGAGGAA+CGG - chr8_3:55937563-55937582 Msa1296460:three_prime_UTR 60.0%
! TGTGTCTGGGGTAGGGTTGG+GGG - chr8_3:55937911-55937930 Msa1296460:intron 60.0%
! GTGCTATTGCTGCCAGCGCT+AGG - chr8_3:55939199-55939218 Msa1296460:intron 60.0%
CTATTGCTGCCAGCGCTAGG+AGG - chr8_3:55939202-55939221 Msa1296460:intron 60.0%
! GGTTGGTTGCAGCTGTCTGG+GGG - chr8_3:55939236-55939255 Msa1296460:intron 60.0%
! TTGACGCAGGGGTATGCACG+TGG - chr8_3:55939272-55939291 Msa1296460:intron 60.0%
TGCTTCTCGCACGGGCTTGT+CGG - chr8_3:55939442-55939461 Msa1296460:CDS 60.0%
! AGGGGGGAAAAGAGTGTGCC+TGG - chr8_3:55939545-55939564 Msa1296460:intron 60.0%
TGCATCGGGGCATGTGCCTT+AGG + chr8_3:55939815-55939834 None:intergenic 60.0%
! GCAATCTGGTGGGCATGGGT+GGG + chr8_3:55940907-55940926 None:intergenic 60.0%
! TGCAATCTGGTGGGCATGGG+TGG + chr8_3:55940908-55940927 None:intergenic 60.0%
TCCCTCCTCTAGTCCTCACG+CGG - chr8_3:55941248-55941267 Msa1296460:intron 60.0%
TCCGCGTGAGGACTAGAGGA+GGG + chr8_3:55941252-55941271 None:intergenic 60.0%
TTCCGCGTGAGGACTAGAGG+AGG + chr8_3:55941253-55941272 None:intergenic 60.0%
CTGCAGACTGATTGGGAGGG+TGG - chr8_3:55942034-55942053 Msa1296460:intron 60.0%
TCTGTCTGGGCAGGATCAGC+AGG + chr8_3:55942370-55942389 None:intergenic 60.0%
GCTGATCCTGCCCAGACAGA+AGG - chr8_3:55942370-55942389 Msa1296460:intron 60.0%
! TGCTCGTGGTCGGCTCACTG+AGG - chr8_3:55937558-55937577 Msa1296460:three_prime_UTR 65.0%
! GTGTCTGGGGTAGGGTTGGG+GGG - chr8_3:55937912-55937931 Msa1296460:intron 65.0%
GGTCTGAGCGTGTCCGTGCA+TGG + chr8_3:55940938-55940957 None:intergenic 65.0%
CGGACACGCTCAGACCCATG+AGG - chr8_3:55940942-55940961 Msa1296460:intron 65.0%
GGTGGGCATGGGTGGGATCG+CGG + chr8_3:55940900-55940919 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 55937306 55943297 55937306 ID=Msa1296460;Name=Msa1296460
chr8_3 mRNA 55937306 55943297 55937306 ID=Msa1296460-mRNA-1;Parent=Msa1296460;Name=Msa1296460-mRNA-1;_AED=0.18;_eAED=0.18;_QI=241|0.57|0.75|0.75|0.85|0.75|8|434|248
chr8_3 exon 55937306 55937390 55937306 ID=Msa1296460-mRNA-1:exon:16055;Parent=Msa1296460-mRNA-1
chr8_3 exon 55937431 55937842 55937431 ID=Msa1296460-mRNA-1:exon:16054;Parent=Msa1296460-mRNA-1
chr8_3 exon 55938192 55938305 55938192 ID=Msa1296460-mRNA-1:exon:16053;Parent=Msa1296460-mRNA-1
chr8_3 exon 55938411 55938563 55938411 ID=Msa1296460-mRNA-1:exon:16052;Parent=Msa1296460-mRNA-1
chr8_3 exon 55939411 55939519 55939411 ID=Msa1296460-mRNA-1:exon:16051;Parent=Msa1296460-mRNA-1
chr8_3 exon 55939632 55939789 55939632 ID=Msa1296460-mRNA-1:exon:16050;Parent=Msa1296460-mRNA-1
chr8_3 exon 55942832 55942915 55942832 ID=Msa1296460-mRNA-1:exon:16049;Parent=Msa1296460-mRNA-1
chr8_3 exon 55942991 55943297 55942991 ID=Msa1296460-mRNA-1:exon:16048;Parent=Msa1296460-mRNA-1
chr8_3 five_prime_UTR 55943057 55943297 55943057 ID=Msa1296460-mRNA-1:five_prime_utr;Parent=Msa1296460-mRNA-1
chr8_3 CDS 55942991 55943056 55942991 ID=Msa1296460-mRNA-1:cds;Parent=Msa1296460-mRNA-1
chr8_3 CDS 55942832 55942915 55942832 ID=Msa1296460-mRNA-1:cds;Parent=Msa1296460-mRNA-1
chr8_3 CDS 55939632 55939789 55939632 ID=Msa1296460-mRNA-1:cds;Parent=Msa1296460-mRNA-1
chr8_3 CDS 55939411 55939519 55939411 ID=Msa1296460-mRNA-1:cds;Parent=Msa1296460-mRNA-1
chr8_3 CDS 55938411 55938563 55938411 ID=Msa1296460-mRNA-1:cds;Parent=Msa1296460-mRNA-1
chr8_3 CDS 55938192 55938305 55938192 ID=Msa1296460-mRNA-1:cds;Parent=Msa1296460-mRNA-1
chr8_3 CDS 55937780 55937842 55937780 ID=Msa1296460-mRNA-1:cds;Parent=Msa1296460-mRNA-1
chr8_3 three_prime_UTR 55937431 55937779 55937431 ID=Msa1296460-mRNA-1:three_prime_utr;Parent=Msa1296460-mRNA-1
chr8_3 three_prime_UTR 55937306 55937390 55937306 ID=Msa1296460-mRNA-1:three_prime_utr;Parent=Msa1296460-mRNA-1
Gene Sequence

>Msa1296460

ATGTCTGGTATTGCTCGTGGTCGGCTCACTGAGGAACGGAAATCGTGGCGGAAGAATCATCCTCATGGTTTTGTTGCGAAACCAGAGACAGCAGCTGATGGTTCTGTGAATTTGATGATTTGGCATTGTACTATTCCTGGAAAAGCTGGGGCCCGACCCACAAATCCAGCTCTAAGAAATCCAAAAACGGAAGTGACAGAATCGCAAGATTCCACCGTTTTTATGGTTTTGCGCCGCGATCCCACCCATGCCCACCAGATTGCAATTCTGTCCATGCACGGACACGCTCAGACCCATGAGGATCGTAGCCTCCAACTGCAACACCCAAGTGTACATGGAGGGCAAGCTTTGCTCTTGATGTTGATTTTACACATGGTGGAAGCTGTCCTTGAAGCCTCATCAGGTCTGGTTTTAGAGACTGATTGGGAGGGTGGCTACTTCCCACTTACATTACACTTCAGTGAAGACTACCCTAGCAAGCCCCCGAAGTGTAAATTCCCCCAAGGTTTCTTCCACCCCAATGTTTACCCATCAGGAACTGTTTGCTTGTCTATACTCAATGAAGATAGTGGGTGGAGACCAGCCATAACAGTGAAGCAAATTCTTGTGGGCATTCAAGATTTGCTTGACCAGCCAAATCCTGCTGATCCTGCCCAGACAGAAGGCTATCATCTGTTTATCCAGGATACCACAGAGTATAAGAGAAGGGTCCGGCTACAGGCAAAGCAGTACCCAAGTATTGTCTAG
Protein sequence

>Msa1296460

MSGIARGRLTEERKSWRKNHPHGFVAKPETAADGSVNLMIWHCTIPGKAGARPTNPALRNPKTEVTESQDSTVFMVLRRDPTHAHQIAILSMHGHAQTHEDRSLQLQHPSVHGGQALLLMLILHMVEAVLEASSGLVLETDWEGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDTTEYKRRVRLQAKQYPSIV*