AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0682140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682140 MtrunA17_Chr4g0028231 99.559 227 1 0 1 227 1 227 1.14e-162 448
Msa0682140 MtrunA17_Chr1g0183621 31.892 185 126 0 1 185 1 185 1.18e-25 99.8
Msa0682140 MtrunA17_Chr2g0303251 29.730 222 148 1 5 226 1 214 4.89e-21 87.4
Msa0682140 MtrunA17_Chr7g0261511 32.018 228 133 4 5 227 1 211 1.35e-18 80.9
Msa0682140 MtrunA17_Chr2g0300321 28.634 227 146 5 7 226 4 221 5.15e-15 71.2
Msa0682140 MtrunA17_Chr8g0343561 27.684 177 126 2 7 182 4 179 1.40e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682140 AT5G22950.1 82.969 229 37 1 1 227 1 229 4.32e-126 356
Msa0682140 AT3G45000.1 72.362 199 53 1 31 227 2 200 1.04e-87 258
Msa0682140 AT3G45000.2 76.259 139 31 1 91 227 1 139 6.56e-59 182
Msa0682140 AT1G03950.1 31.532 222 140 3 5 226 1 210 1.05e-28 107
Msa0682140 AT5G44560.1 29.834 181 127 0 5 185 1 181 9.37e-21 87.0
Msa0682140 AT5G44560.4 29.213 178 126 0 5 182 1 178 6.22e-20 84.3
Msa0682140 AT2G06530.1 29.362 235 142 7 4 226 1 223 6.92e-17 77.0
Msa0682140 AT5G44560.2 28.662 157 112 0 29 185 5 161 1.19e-14 70.5
Msa0682140 AT2G06530.2 28.638 213 129 6 25 226 2 202 9.17e-13 65.5
Msa0682140 AT5G44560.3 30.534 131 91 0 5 135 1 131 1.04e-12 64.3

Find 60 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAATAACTGTTGCGGATT+TGG 0.162141 4_4:-43223196 None:intergenic
ATTATATATACAAAATAAAA+TGG 0.182644 4_4:-43223123 None:intergenic
AAGAAGAAATGGAAGAAATT+AGG 0.185877 4_4:+43227371 Msa0682140:CDS
ACTCTCTTATAATATATATC+AGG 0.254147 4_4:-43227541 None:intergenic
TGCATAGCAACAGCCATTTC+AGG 0.256684 4_4:-43226923 None:intergenic
GAATGAAAATTAATTATTCT+TGG 0.264027 4_4:-43223082 None:intergenic
AACTGTTGCGGATTTGGTTT+CGG 0.312520 4_4:-43223190 None:intergenic
CCCATTTGTAATATTAGTAT+TGG 0.323850 4_4:+43227581 Msa0682140:three_prime_UTR
CGCAACAGTTATTGAGAGAT+TGG 0.341374 4_4:+43223203 Msa0682140:CDS
TCCAATACTAATATTACAAA+TGG 0.345851 4_4:-43227582 None:intergenic
TTATATATACAAAATAAAAT+GGG 0.355594 4_4:-43223122 None:intergenic
GAACCGTCTGCATGAAAATA+AGG 0.358366 4_4:+43224588 Msa0682140:CDS
TGACCTGACTTTAGCGAGTC+TGG 0.371271 4_4:-43227395 None:intergenic
AGAAGAAATGGAAGAAATTA+GGG 0.376649 4_4:+43227372 Msa0682140:CDS
CTACAGAACTTGTGAGATCT+AGG 0.401420 4_4:+43224557 Msa0682140:CDS
TCATAAACGAGTTTCTAAAA+AGG 0.417167 4_4:+43227415 Msa0682140:exon
TGTAATATTAGTATTGGAAA+AGG 0.419711 4_4:+43227587 Msa0682140:three_prime_UTR
CCTCATGAAGGCTCCTGAAA+TGG 0.421101 4_4:+43226910 Msa0682140:CDS
TCCTCTGCGGCACTTTGAGC+AGG 0.453503 4_4:-43227231 None:intergenic
TTCAGCAATTGCTCGTACTG+TGG 0.454062 4_4:+43226844 Msa0682140:intron
CATATTAGCTATGATGCCAT+TGG 0.473050 4_4:-43227620 None:intergenic
GGAATATAAATTATCGAAGA+AGG 0.474281 4_4:-43223029 None:intergenic
TGATTTAGATATTCAGAGAG+AGG 0.474813 4_4:+43223368 Msa0682140:intron
TGTTGATGATGAAGAAGAAA+TGG 0.478357 4_4:+43227360 Msa0682140:CDS
TTCTTCATCATCAACACCCT+CGG 0.485224 4_4:-43227353 None:intergenic
CCAATACTAATATTACAAAT+GGG 0.494913 4_4:-43227581 None:intergenic
AGGTGGGTGTGTTGTTCGTA+AGG 0.498532 4_4:+43222961 Msa0682140:five_prime_UTR
GTTTCAGGCAGGAGTAATTG+AGG 0.506660 4_4:+43227059 Msa0682140:intron
GGGCCAGACTCGCTAAAGTC+AGG 0.512607 4_4:+43227392 Msa0682140:CDS
CTATTAAAGAAGCTGCTAAG+AGG 0.518339 4_4:+43223409 Msa0682140:CDS
AAAGTCTTAACTGAATTAGC+TGG 0.521196 4_4:+43227156 Msa0682140:CDS
AAAGAAGAAGATATTGAAGG+TGG 0.525044 4_4:+43222944 Msa0682140:five_prime_UTR
TCAGCAATTGCTCGTACTGT+GGG 0.530452 4_4:+43226845 Msa0682140:intron
AACATTGAACGACAAATTCG+CGG 0.539995 4_4:+43223253 Msa0682140:CDS
TGAAGCTGTGAGGAAACAAA+AGG 0.551851 4_4:+43227200 Msa0682140:CDS
CAATCTCTCAATAACTGTTG+CGG 0.557549 4_4:-43223202 None:intergenic
AAAAGGTGACTTATTACCAA+TGG 0.570569 4_4:+43227604 Msa0682140:three_prime_UTR
TGCTCAAAGTGCCGCAGAGG+AGG 0.582103 4_4:+43227233 Msa0682140:CDS
CTCTCTTATAATATATATCA+GGG 0.589567 4_4:-43227540 None:intergenic
AAGAAGAAGATATTGAAGGT+GGG 0.594381 4_4:+43222945 Msa0682140:five_prime_UTR
AACTCAATATCAATGCACCT+TGG 0.594406 4_4:+43224619 Msa0682140:CDS
ACCTGCTCAAAGTGCCGCAG+AGG 0.595296 4_4:+43227230 Msa0682140:CDS
TATATATACAAAATAAAATG+GGG 0.596746 4_4:-43223121 None:intergenic
TGACTCAGCATTAGATTCTG+AGG 0.600712 4_4:+43227101 Msa0682140:CDS
TGAAGATTAGATCTTACTGA+AGG 0.602356 4_4:-43223050 None:intergenic
CAGGAAGATGCTATAGCCGA+GGG 0.609938 4_4:+43227337 Msa0682140:intron
GCTTGTCAATAACCTCATGA+AGG 0.612171 4_4:+43226898 Msa0682140:CDS
ACCTACCAACACTTTCTCCA+AGG 0.615558 4_4:-43224636 None:intergenic
CCATTTCAGGAGCCTTCATG+AGG 0.615981 4_4:-43226910 None:intergenic
GAATGACATTGGTTCTGCAA+AGG 0.618815 4_4:+43223431 Msa0682140:CDS
GCAGGAAGATGCTATAGCCG+AGG 0.620355 4_4:+43227336 Msa0682140:intron
ATGCACCTTGGAGAAAGTGT+TGG 0.628455 4_4:+43224631 Msa0682140:CDS
ATTGACAAGCTTCATAACCT+CGG 0.641959 4_4:-43226885 None:intergenic
TATATCAGGGCACAATGCAG+AGG 0.655974 4_4:-43227527 None:intergenic
CACAACTTCCTGAAGCTGTG+AGG 0.670413 4_4:+43227190 Msa0682140:CDS
AACTGCATGTACCTCCTCTG+CGG 0.671034 4_4:-43227244 None:intergenic
GCTGCTAAGAGGAATGACAT+TGG 0.677222 4_4:+43223420 Msa0682140:CDS
CACAGCTTCAGGAAGTTGTG+CGG 0.680019 4_4:-43227187 None:intergenic
ACATCTATCAAAGAGTGCCG+AGG 0.689000 4_4:+43226868 Msa0682140:CDS
GTTCAGCAAAGAAATGACCA+AGG 0.706921 4_4:+43226949 Msa0682140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTTTTTTATTT+TGG + chr4_4:43224032-43224051 Msa0682140:intron 0.0%
!!! TTTTTTATTTTTTTTATTTT+GGG + chr4_4:43224033-43224052 Msa0682140:intron 0.0%
!! TATATATACAAAATAAAATG+GGG - chr4_4:43223124-43223143 None:intergenic 10.0%
!!! ATATTTTTTAATCTTTACAA+TGG + chr4_4:43226021-43226040 Msa0682140:intron 10.0%
!! GAATGAAAATTAATTATTCT+TGG - chr4_4:43223085-43223104 None:intergenic 15.0%
!!! TTTTATTCTTAAATTACTAC+AGG - chr4_4:43223517-43223536 None:intergenic 15.0%
!!! TTTTTAATAAAGAGTATGTT+TGG - chr4_4:43224894-43224913 None:intergenic 15.0%
!!! ATTTTATCTATAGTTTTTTG+AGG + chr4_4:43225301-43225320 Msa0682140:intron 15.0%
!! CTTATAATAATTAGCTATTA+AGG - chr4_4:43225817-43225836 None:intergenic 15.0%
!! TAAAAAGAAGAAGATATTGA+AGG + chr4_4:43222941-43222960 Msa0682140:five_prime_UTR 20.0%
!!! TAAGAATAAAATTAGCTTAG+TGG + chr4_4:43223526-43223545 Msa0682140:intron 20.0%
!! GTTTCTCTTAAAAAATTTCT+AGG - chr4_4:43223767-43223786 None:intergenic 20.0%
!! AAATTTAGTGATTAATGAGT+TGG + chr4_4:43223796-43223815 Msa0682140:intron 20.0%
!!! GTTTTATCATAAACCATATT+TGG - chr4_4:43223824-43223843 None:intergenic 20.0%
!! TATGGTTTATGATAAAACAT+AGG + chr4_4:43223826-43223845 Msa0682140:intron 20.0%
!! ATGGTTTATGATAAAACATA+GGG + chr4_4:43223827-43223846 Msa0682140:intron 20.0%
!!! AGTGTATATACAAGTTTTTA+TGG + chr4_4:43224220-43224239 Msa0682140:intron 20.0%
!! AAAATCTAATATCCTTATCA+TGG + chr4_4:43224509-43224528 Msa0682140:intron 20.0%
!!! ATGATCAAATGTTTTGTTTA+TGG + chr4_4:43225049-43225068 Msa0682140:intron 20.0%
!!! TGATCAAATGTTTTGTTTAT+GGG + chr4_4:43225050-43225069 Msa0682140:intron 20.0%
!!! ATTTTATCTATAGGTTTTTG+AGG + chr4_4:43225099-43225118 Msa0682140:intron 20.0%
!!! TATGATGTTTTACAATTATC+AGG + chr4_4:43226100-43226119 Msa0682140:intron 20.0%
!! TCTTATCTCAAGTATTTATT+TGG + chr4_4:43226623-43226642 Msa0682140:intron 20.0%
!!! TGATCAATGACTAATTTTAA+AGG - chr4_4:43226777-43226796 None:intergenic 20.0%
!! GTTAATTGCATGATAATTAT+TGG + chr4_4:43227025-43227044 Msa0682140:intron 20.0%
!! CTCTCTTATAATATATATCA+GGG - chr4_4:43227543-43227562 None:intergenic 20.0%
!! ACTCTCTTATAATATATATC+AGG - chr4_4:43227544-43227563 None:intergenic 20.0%
!! CCAATACTAATATTACAAAT+GGG - chr4_4:43227584-43227603 None:intergenic 20.0%
!! TCCAATACTAATATTACAAA+TGG - chr4_4:43227585-43227604 None:intergenic 20.0%
!!! TGTAATATTAGTATTGGAAA+AGG + chr4_4:43227587-43227606 Msa0682140:three_prime_UTR 20.0%
! GGAATATAAATTATCGAAGA+AGG - chr4_4:43223032-43223051 None:intergenic 25.0%
!! ATAAAATGGGGAATTTTTGA+AGG - chr4_4:43223112-43223131 None:intergenic 25.0%
!!! GTTTTAAGAGAGATCAAAAA+TGG - chr4_4:43223285-43223304 None:intergenic 25.0%
! GAAGAATCAAGTATCAATTA+GGG - chr4_4:43223307-43223326 None:intergenic 25.0%
! AGAAGAATCAAGTATCAATT+AGG - chr4_4:43223308-43223327 None:intergenic 25.0%
! TTGATTCTTCTGATTATTTG+TGG + chr4_4:43223317-43223336 Msa0682140:intron 25.0%
! TGATTATTTGTGGTTATGAT+TGG + chr4_4:43223327-43223346 Msa0682140:intron 25.0%
!!! TTCATAACCAATGCTATTTT+TGG + chr4_4:43224396-43224415 Msa0682140:intron 25.0%
!!! GTCTTCTTTTTTAGATTTCA+AGG + chr4_4:43224447-43224466 Msa0682140:intron 25.0%
! ATTGAACAAATACCATGATA+AGG - chr4_4:43224524-43224543 None:intergenic 25.0%
! ATGGTATTTGTTCAATTTAC+AGG + chr4_4:43224528-43224547 Msa0682140:intron 25.0%
!! TAGTTTTTGCAAAATCACAA+TGG - chr4_4:43224743-43224762 None:intergenic 25.0%
!! CACAACTTTTGATAAAATCA+CGG + chr4_4:43224833-43224852 Msa0682140:intron 25.0%
! ATTCAACTTAGTTAACAAGA+GGG - chr4_4:43224997-43225016 None:intergenic 25.0%
! TATTCAACTTAGTTAACAAG+AGG - chr4_4:43224998-43225017 None:intergenic 25.0%
!! TCTTGTTAACTAAGTTGAAT+AGG + chr4_4:43224997-43225016 Msa0682140:intron 25.0%
!!! GATCAAATGTTTTGTTTATG+GGG + chr4_4:43225051-43225070 Msa0682140:intron 25.0%
!! TGTCTATGGATTTTATCTAT+AGG + chr4_4:43225090-43225109 Msa0682140:intron 25.0%
!! CATGATTGTTTCATTTTAGA+AGG + chr4_4:43225940-43225959 Msa0682140:intron 25.0%
! AATTATTCTCTTCTTGAATG+TGG - chr4_4:43226184-43226203 None:intergenic 25.0%
! AGAAGAGAATAATTCAGTAA+AGG + chr4_4:43226190-43226209 Msa0682140:intron 25.0%
! GAAGAGAATAATTCAGTAAA+GGG + chr4_4:43226191-43226210 Msa0682140:intron 25.0%
! AAGAGAATAATTCAGTAAAG+GGG + chr4_4:43226192-43226211 Msa0682140:intron 25.0%
! AGCCAAATAACTAATTTAAC+AGG + chr4_4:43226227-43226246 Msa0682140:intron 25.0%
! CTCCTGTTAAATTAGTTATT+TGG - chr4_4:43226232-43226251 None:intergenic 25.0%
! CAAATAACTAATTTAACAGG+AGG + chr4_4:43226230-43226249 Msa0682140:intron 25.0%
!! TGATTTTCATACAAAGGATT+AGG - chr4_4:43226412-43226431 None:intergenic 25.0%
!! TAACTGTGATTTTCATACAA+AGG - chr4_4:43226418-43226437 None:intergenic 25.0%
! GTATGAAAATCACAGTTAAA+TGG + chr4_4:43226420-43226439 Msa0682140:intron 25.0%
!!! TGCATTTTTAGGTTTTACTT+TGG + chr4_4:43226484-43226503 Msa0682140:intron 25.0%
!!! GCATTTTTAGGTTTTACTTT+GGG + chr4_4:43226485-43226504 Msa0682140:intron 25.0%
!!! CATTTTTAGGTTTTACTTTG+GGG + chr4_4:43226486-43226505 Msa0682140:intron 25.0%
! CATAATATAGTCATTGTACA+AGG - chr4_4:43226649-43226668 None:intergenic 25.0%
!! TTGATAATAGAACTGTTCAT+TGG + chr4_4:43226798-43226817 Msa0682140:intron 25.0%
!! TCATTGGAAATTCCTAATTT+TGG + chr4_4:43226814-43226833 Msa0682140:intron 25.0%
! AAGAAGAAATGGAAGAAATT+AGG + chr4_4:43227371-43227390 Msa0682140:CDS 25.0%
! AGAAGAAATGGAAGAAATTA+GGG + chr4_4:43227372-43227391 Msa0682140:CDS 25.0%
!! TCATAAACGAGTTTCTAAAA+AGG + chr4_4:43227415-43227434 Msa0682140:exon 25.0%
! TCATAAAAAGTTCTACTTTC+TGG + chr4_4:43227491-43227510 Msa0682140:three_prime_UTR 25.0%
! CCCATTTGTAATATTAGTAT+TGG + chr4_4:43227581-43227600 Msa0682140:three_prime_UTR 25.0%
AAAGAAGAAGATATTGAAGG+TGG + chr4_4:43222944-43222963 Msa0682140:five_prime_UTR 30.0%
AAGAAGAAGATATTGAAGGT+GGG + chr4_4:43222945-43222964 Msa0682140:five_prime_UTR 30.0%
TGAAGATTAGATCTTACTGA+AGG - chr4_4:43223053-43223072 None:intergenic 30.0%
!!! ATTTTGGGATCAGTGAAAAA+TGG + chr4_4:43223144-43223163 Msa0682140:exon 30.0%
TGATTTAGATATTCAGAGAG+AGG + chr4_4:43223368-43223387 Msa0682140:intron 30.0%
AGTAAGGAGTTTAGATTAGA+TGG + chr4_4:43223709-43223728 Msa0682140:intron 30.0%
! TAATGAGTTGGATCCAAATA+TGG + chr4_4:43223808-43223827 Msa0682140:intron 30.0%
GTACAAACCAAAAATAGCAT+TGG - chr4_4:43224406-43224425 None:intergenic 30.0%
!!! ATGCTATTTTTGGTTTGTAC+TGG + chr4_4:43224406-43224425 Msa0682140:intron 30.0%
AAAAAAGAAGACTGCCTAAA+AGG - chr4_4:43224439-43224458 None:intergenic 30.0%
AAGGTTCGATAGAATAAAGT+AGG + chr4_4:43224466-43224485 Msa0682140:intron 30.0%
TATCAAAAGTTGTGCAAGTT+TGG - chr4_4:43224827-43224846 None:intergenic 30.0%
!!! TCTATAGTTTTTTGAGGTTG+AGG + chr4_4:43225307-43225326 Msa0682140:intron 30.0%
!!! CTATAGTTTTTTGAGGTTGA+GGG + chr4_4:43225308-43225327 Msa0682140:intron 30.0%
CAACATAAATGTTTCACTCT+TGG + chr4_4:43225361-43225380 Msa0682140:intron 30.0%
TATCTTAACATGCTATAGCT+AGG + chr4_4:43225404-43225423 Msa0682140:intron 30.0%
! TTCTCTTTTTCTTATGCCTT+GGG - chr4_4:43225638-43225657 None:intergenic 30.0%
! TTTCTCTTTTTCTTATGCCT+TGG - chr4_4:43225639-43225658 None:intergenic 30.0%
! CAAGCTGAATTTTATTCATG+AGG + chr4_4:43225696-43225715 Msa0682140:intron 30.0%
!! ATTTTATTCATGAGGCATTC+TGG + chr4_4:43225704-43225723 Msa0682140:intron 30.0%
!! TTTTATTCATGAGGCATTCT+GGG + chr4_4:43225705-43225724 Msa0682140:intron 30.0%
!!! CTTTTGATTTGTAACTACAC+AGG + chr4_4:43225881-43225900 Msa0682140:intron 30.0%
!! TTTCTTTTGAGAAGATGAAG+CGG + chr4_4:43225980-43225999 Msa0682140:intron 30.0%
AACATAGAATGACATTGACA+AGG + chr4_4:43226066-43226085 Msa0682140:intron 30.0%
ACATAGAATGACATTGACAA+GGG + chr4_4:43226067-43226086 Msa0682140:intron 30.0%
TTATACAAAATGAACCTTGC+TGG - chr4_4:43226355-43226374 None:intergenic 30.0%
CAAATTAAAACAGGAAGAGA+GGG + chr4_4:43226548-43226567 Msa0682140:intron 30.0%
AAATTAAAACAGGAAGAGAG+GGG + chr4_4:43226549-43226568 Msa0682140:intron 30.0%
AATTAACTTCTATGACTACG+GGG - chr4_4:43227012-43227031 None:intergenic 30.0%
CAATTAACTTCTATGACTAC+GGG - chr4_4:43227013-43227032 None:intergenic 30.0%
GCAATTAACTTCTATGACTA+CGG - chr4_4:43227014-43227033 None:intergenic 30.0%
!! TTGGTAATGTATTCTGTTTC+AGG + chr4_4:43227044-43227063 Msa0682140:intron 30.0%
AAAGTCTTAACTGAATTAGC+TGG + chr4_4:43227156-43227175 Msa0682140:CDS 30.0%
AGTTCAATTTCCTGTTAACA+AGG + chr4_4:43227263-43227282 Msa0682140:intron 30.0%
TGGAATGCATTATTATTTGC+AGG + chr4_4:43227318-43227337 Msa0682140:intron 30.0%
!! TGTTGATGATGAAGAAGAAA+TGG + chr4_4:43227360-43227379 Msa0682140:CDS 30.0%
AAAAGGTGACTTATTACCAA+TGG + chr4_4:43227604-43227623 Msa0682140:three_prime_UTR 30.0%
!! ATGGGGAATTTTTGAAGGAT+TGG - chr4_4:43223107-43223126 None:intergenic 35.0%
CAATCTCTCAATAACTGTTG+CGG - chr4_4:43223205-43223224 None:intergenic 35.0%
AACATTGAACGACAAATTCG+CGG + chr4_4:43223253-43223272 Msa0682140:CDS 35.0%
CTATTAAAGAAGCTGCTAAG+AGG + chr4_4:43223409-43223428 Msa0682140:CDS 35.0%
ACCTATAGTAGAAAAGATCG+TGG + chr4_4:43223634-43223653 Msa0682140:intron 35.0%
! TCCACGATCTTTTCTACTAT+AGG - chr4_4:43223638-43223657 None:intergenic 35.0%
! GACGTGTAGATTTTGTAGTA+AGG + chr4_4:43223693-43223712 Msa0682140:intron 35.0%
AAGGAGTTTAGATTAGATGG+AGG + chr4_4:43223712-43223731 Msa0682140:intron 35.0%
CTTATCTCATTAAGTGGGAT+AGG - chr4_4:43223871-43223890 None:intergenic 35.0%
CTATCCCACTTAATGAGATA+AGG + chr4_4:43223869-43223888 Msa0682140:intron 35.0%
! CAAGCCTTATCTCATTAAGT+GGG - chr4_4:43223876-43223895 None:intergenic 35.0%
GTTTCAAAAGGCTAGAAGTT+TGG - chr4_4:43224126-43224145 None:intergenic 35.0%
!!! TTCTAGCCTTTTGAAACAAC+AGG + chr4_4:43224129-43224148 Msa0682140:intron 35.0%
GAAAGACAGTACATTGAATG+AGG - chr4_4:43224172-43224191 None:intergenic 35.0%
! TACCCAATTGAAGGCATATT+CGG + chr4_4:43224277-43224296 Msa0682140:intron 35.0%
AACTCAATATCAATGCACCT+TGG + chr4_4:43224619-43224638 Msa0682140:CDS 35.0%
!! TTTGCCTTAATTTGTCCTCT+TGG + chr4_4:43224674-43224693 Msa0682140:intron 35.0%
AACTACACTTTGTGCATGTT+TGG + chr4_4:43224758-43224777 Msa0682140:intron 35.0%
TGCAAGTTTGGTATCATAAC+TGG - chr4_4:43224815-43224834 None:intergenic 35.0%
! ACGGTAGCTCACTATTATTT+TGG + chr4_4:43224852-43224871 Msa0682140:intron 35.0%
AGTATGTTTGGTATTGCAGT+GGG - chr4_4:43224882-43224901 None:intergenic 35.0%
!!! TCTATAGGTTTTTGAGGTTG+AGG + chr4_4:43225105-43225124 Msa0682140:intron 35.0%
!!! CTATAGGTTTTTGAGGTTGA+GGG + chr4_4:43225106-43225125 Msa0682140:intron 35.0%
AACTGACTGTGATGTTTGTA+TGG + chr4_4:43225132-43225151 Msa0682140:intron 35.0%
TTTCTAAACGTGCTATACCT+AGG + chr4_4:43225202-43225221 Msa0682140:intron 35.0%
TTCTAAACGTGCTATACCTA+GGG + chr4_4:43225203-43225222 Msa0682140:intron 35.0%
TAAAAGAGACCAAACAAGAG+AGG + chr4_4:43225259-43225278 Msa0682140:intron 35.0%
AACTGATTGTGATGTCCATA+TGG + chr4_4:43225334-43225353 Msa0682140:intron 35.0%
CATTTATGTTGCATGCCATA+TGG - chr4_4:43225352-43225371 None:intergenic 35.0%
TATAGCTAGGAACAGGAAAA+GGG + chr4_4:43225417-43225436 Msa0682140:intron 35.0%
TACCTATCTCCAACTCATAT+AGG + chr4_4:43225530-43225549 Msa0682140:intron 35.0%
ACCTATCTCCAACTCATATA+GGG + chr4_4:43225531-43225550 Msa0682140:intron 35.0%
!!! GGGGATAGTTTTATATAACC+AGG + chr4_4:43225564-43225583 Msa0682140:intron 35.0%
GGCATAAGAAAAAGAGAAAG+CGG + chr4_4:43225640-43225659 Msa0682140:intron 35.0%
GCATAAGAAAAAGAGAAAGC+GGG + chr4_4:43225641-43225660 Msa0682140:intron 35.0%
! AATAGCTTGTACGAAGCTTA+TGG + chr4_4:43225845-43225864 Msa0682140:intron 35.0%
! TGATTTGTAACTACACAGGA+TGG + chr4_4:43225885-43225904 Msa0682140:intron 35.0%
GATTTGTAACTACACAGGAT+GGG + chr4_4:43225886-43225905 Msa0682140:intron 35.0%
GCAGACTAAACAATTCCTAT+AGG - chr4_4:43225917-43225936 None:intergenic 35.0%
ATAGGAATTGTTTAGTCTGC+AGG + chr4_4:43225917-43225936 Msa0682140:intron 35.0%
CTTTACAATGGCAGCTATAA+TGG + chr4_4:43226033-43226052 Msa0682140:intron 35.0%
CATAACTGAACTTGACTAGT+AGG + chr4_4:43226137-43226156 Msa0682140:intron 35.0%
AATAATTCAGTAAAGGGGCA+GGG + chr4_4:43226197-43226216 Msa0682140:intron 35.0%
TTAACAGGAGGTAATAGTTG+TGG + chr4_4:43226242-43226261 Msa0682140:intron 35.0%
TAACAGGAGGTAATAGTTGT+GGG + chr4_4:43226243-43226262 Msa0682140:intron 35.0%
AGACAGAATAGAGAGGAAAT+TGG + chr4_4:43226291-43226310 Msa0682140:intron 35.0%
TTTAATTGACACCTCCTTTG+TGG + chr4_4:43226461-43226480 Msa0682140:intron 35.0%
AACCTAAAAATGCACCACAA+AGG - chr4_4:43226478-43226497 None:intergenic 35.0%
! GGGGATAAAATTTTACTGAG+CGG + chr4_4:43226505-43226524 Msa0682140:intron 35.0%
!!! CCTCTCTTCCTGTTTTAATT+TGG - chr4_4:43226550-43226569 None:intergenic 35.0%
CCAAATTAAAACAGGAAGAG+AGG + chr4_4:43226547-43226566 Msa0682140:intron 35.0%
ATTGACAAGCTTCATAACCT+CGG - chr4_4:43226888-43226907 None:intergenic 35.0%
TAATGTATTCTGTTTCAGGC+AGG + chr4_4:43227048-43227067 Msa0682140:intron 35.0%
CATAATTAGTGTGACTTGAG+AGG - chr4_4:43227300-43227319 None:intergenic 35.0%
CTCTCAAGTCACACTAATTA+TGG + chr4_4:43227298-43227317 Msa0682140:intron 35.0%
CATATTAGCTATGATGCCAT+TGG - chr4_4:43227623-43227642 None:intergenic 35.0%
GGATCAGTGAAAAATGGAGA+AGG + chr4_4:43223150-43223169 Msa0682140:exon 40.0%
! AACTGTTGCGGATTTGGTTT+CGG - chr4_4:43223193-43223212 None:intergenic 40.0%
CTCAATAACTGTTGCGGATT+TGG - chr4_4:43223199-43223218 None:intergenic 40.0%
CGCAACAGTTATTGAGAGAT+TGG + chr4_4:43223203-43223222 Msa0682140:CDS 40.0%
!! GAATGACATTGGTTCTGCAA+AGG + chr4_4:43223431-43223450 Msa0682140:CDS 40.0%
CGTTGGATGTGTTGTAATAC+TGG + chr4_4:43223563-43223582 Msa0682140:intron 40.0%
AGATCGTGGAAGTTATGCTT+AGG + chr4_4:43223648-43223667 Msa0682140:intron 40.0%
! CCAAGCCTTATCTCATTAAG+TGG - chr4_4:43223877-43223896 None:intergenic 40.0%
CCACTTAATGAGATAAGGCT+TGG + chr4_4:43223874-43223893 Msa0682140:intron 40.0%
! AATCACATGTGTCGATGTGT+CGG + chr4_4:43223907-43223926 Msa0682140:intron 40.0%
!! CCAACACCTGTTGTTTCAAA+AGG - chr4_4:43224138-43224157 None:intergenic 40.0%
!!! CCTTTTGAAACAACAGGTGT+TGG + chr4_4:43224135-43224154 Msa0682140:intron 40.0%
CTGTCTTTCTGCTGAATGTA+AGG + chr4_4:43224183-43224202 Msa0682140:intron 40.0%
TCTTTCTGCTGAATGTAAGG+TGG + chr4_4:43224186-43224205 Msa0682140:intron 40.0%
TGCTGAATGTAAGGTGGAAT+AGG + chr4_4:43224192-43224211 Msa0682140:intron 40.0%
GTGATCGGTCTTAACATGTA+TGG - chr4_4:43224252-43224271 None:intergenic 40.0%
GAATATGCCTTCAATTGGGT+AGG - chr4_4:43224278-43224297 None:intergenic 40.0%
CACCGAATATGCCTTCAATT+GGG - chr4_4:43224282-43224301 None:intergenic 40.0%
ACACCGAATATGCCTTCAAT+TGG - chr4_4:43224283-43224302 None:intergenic 40.0%
!! GTACTGGTGTATCACCTTTT+AGG + chr4_4:43224422-43224441 Msa0682140:intron 40.0%
CTACAGAACTTGTGAGATCT+AGG + chr4_4:43224557-43224576 Msa0682140:CDS 40.0%
GAACCGTCTGCATGAAAATA+AGG + chr4_4:43224588-43224607 Msa0682140:CDS 40.0%
!!! GTGCCTTATTTTCATGCAGA+CGG - chr4_4:43224594-43224613 None:intergenic 40.0%
!!! GAGAAAGTGTTGGTAGGTTT+TGG + chr4_4:43224641-43224660 Msa0682140:intron 40.0%
TGCACCAAGAGGACAAATTA+AGG - chr4_4:43224681-43224700 None:intergenic 40.0%
GATATCAAACATGCACCAAG+AGG - chr4_4:43224692-43224711 None:intergenic 40.0%
GTGCATGTTTGATATCACGA+TGG + chr4_4:43224696-43224715 Msa0682140:intron 40.0%
GAGTATGTTTGGTATTGCAG+TGG - chr4_4:43224883-43224902 None:intergenic 40.0%
ATGAAGCACAAGAGCTAACT+TGG - chr4_4:43224921-43224940 None:intergenic 40.0%
TTATGGGGAAAACTCAACTG+CGG + chr4_4:43225066-43225085 Msa0682140:intron 40.0%
AGAGATTGTGTGCAAAGAGT+GGG - chr4_4:43225174-43225193 None:intergenic 40.0%
TAGAGATTGTGTGCAAAGAG+TGG - chr4_4:43225175-43225194 None:intergenic 40.0%
ACTCTTTGCACACAATCTCT+AGG + chr4_4:43225174-43225193 Msa0682140:intron 40.0%
!! TTGCACACAATCTCTAGGAT+TGG + chr4_4:43225179-43225198 Msa0682140:intron 40.0%
TATACCTAGGGACAGGAAAA+GGG + chr4_4:43225215-43225234 Msa0682140:intron 40.0%
AACATGCTATAGCTAGGAAC+AGG + chr4_4:43225410-43225429 Msa0682140:intron 40.0%
CTATAGCTAGGAACAGGAAA+AGG + chr4_4:43225416-43225435 Msa0682140:intron 40.0%
GAAAAGGGTCTTAGCAAAAG+AGG + chr4_4:43225432-43225451 Msa0682140:intron 40.0%
CAAAAAGAAACCAACCGAGA+GGG + chr4_4:43225460-43225479 Msa0682140:intron 40.0%
AAAAAGAAACCAACCGAGAG+GGG + chr4_4:43225461-43225480 Msa0682140:intron 40.0%
CCTATCTCCAACTCATATAG+GGG + chr4_4:43225532-43225551 Msa0682140:intron 40.0%
TCCAACTCATATAGGGGAAA+GGG + chr4_4:43225538-43225557 Msa0682140:intron 40.0%
TCATATAGGGGAAAGGGAAT+GGG + chr4_4:43225544-43225563 Msa0682140:intron 40.0%
AGGCATTCATTCCTTAGTCA+CGG + chr4_4:43225584-43225603 Msa0682140:intron 40.0%
! AGAAAAAGAGAAAGCGGGTT+AGG + chr4_4:43225646-43225665 Msa0682140:intron 40.0%
TTGCAAGTTGCAAGCAACTT+CGG - chr4_4:43225679-43225698 None:intergenic 40.0%
! TGAGGCATTCTGGGTTTATT+TGG + chr4_4:43225714-43225733 Msa0682140:intron 40.0%
! GAGGCATTCTGGGTTTATTT+GGG + chr4_4:43225715-43225734 Msa0682140:intron 40.0%
CATTCTGGGTTTATTTGGGT+TGG + chr4_4:43225719-43225738 Msa0682140:intron 40.0%
CCAACACTAATAGATATGCC+TGG - chr4_4:43225746-43225765 None:intergenic 40.0%
CCAGGCATATCTATTAGTGT+TGG + chr4_4:43225743-43225762 Msa0682140:intron 40.0%
! TTGGCGCTTATGCATGTTTT+TGG + chr4_4:43225762-43225781 Msa0682140:intron 40.0%
! TGGCGCTTATGCATGTTTTT+GGG + chr4_4:43225763-43225782 Msa0682140:intron 40.0%
GTAGGTAAGAAGCCTTTGAT+AGG + chr4_4:43226155-43226174 Msa0682140:intron 40.0%
TGAATGTGGAAGCCTATCAA+AGG - chr4_4:43226170-43226189 None:intergenic 40.0%
GAATAATTCAGTAAAGGGGC+AGG + chr4_4:43226196-43226215 Msa0682140:intron 40.0%
CTATGCAAGACAGAATAGAG+AGG + chr4_4:43226284-43226303 Msa0682140:intron 40.0%
CTAAAAATGCACCACAAAGG+AGG - chr4_4:43226475-43226494 None:intergenic 40.0%
! CTCCTTTGTGGTGCATTTTT+AGG + chr4_4:43226473-43226492 Msa0682140:intron 40.0%
AGTGAGGGCCAAATTAAAAC+AGG + chr4_4:43226539-43226558 Msa0682140:intron 40.0%
CTGAAAAGGCAGCCAAAATT+AGG - chr4_4:43226829-43226848 None:intergenic 40.0%
AGTACGAGCAATTGCTGAAA+AGG - chr4_4:43226843-43226862 None:intergenic 40.0%
GCTTGTCAATAACCTCATGA+AGG + chr4_4:43226898-43226917 Msa0682140:CDS 40.0%
GTTCAGCAAAGAAATGACCA+AGG + chr4_4:43226949-43226968 Msa0682140:CDS 40.0%
! TGAAGTATGAAGGCATACCT+TGG - chr4_4:43226969-43226988 None:intergenic 40.0%
GCAGGAGAAATGAAGTATGA+AGG - chr4_4:43226979-43226998 None:intergenic 40.0%
TGACTCAGCATTAGATTCTG+AGG + chr4_4:43227101-43227120 Msa0682140:CDS 40.0%
!! TTTTGTTTCCTCACAGCTTC+AGG - chr4_4:43227201-43227220 None:intergenic 40.0%
TGAAGCTGTGAGGAAACAAA+AGG + chr4_4:43227200-43227219 Msa0682140:CDS 40.0%
!! GCAAAAAGAGCCTTGTTAAC+AGG - chr4_4:43227276-43227295 None:intergenic 40.0%
TTCTTCATCATCAACACCCT+CGG - chr4_4:43227356-43227375 None:intergenic 40.0%
GCTGCTAAGAGGAATGACAT+TGG + chr4_4:43223420-43223439 Msa0682140:CDS 45.0%
TTGAGATCTGTCACTGACAC+CGG + chr4_4:43223473-43223492 Msa0682140:intron 45.0%
TGGAGATGAGAAAGTTGCGT+TGG + chr4_4:43223546-43223565 Msa0682140:intron 45.0%
CGACATTAGAGAGAGAGATC+AGG + chr4_4:43223607-43223626 Msa0682140:intron 45.0%
TCGTGGAAGTTATGCTTAGG+TGG + chr4_4:43223651-43223670 Msa0682140:intron 45.0%
GAGGATAGTCAGATCACTAG+AGG + chr4_4:43223731-43223750 Msa0682140:intron 45.0%
! GCACTGACAGTTCTAATCGA+AGG - chr4_4:43223982-43224001 None:intergenic 45.0%
CAATTGGGTAGGACTGTGAT+CGG - chr4_4:43224267-43224286 None:intergenic 45.0%
TCACAGTCCTACCCAATTGA+AGG + chr4_4:43224268-43224287 Msa0682140:intron 45.0%
!! CATATTCGGTGTCAGACATG+TGG + chr4_4:43224291-43224310 Msa0682140:intron 45.0%
GCTCTGACACACACAAAAAC+AGG - chr4_4:43224376-43224395 None:intergenic 45.0%
! ATGCACCTTGGAGAAAGTGT+TGG + chr4_4:43224631-43224650 Msa0682140:CDS 45.0%
!! ACCTTGGAGAAAGTGTTGGT+AGG + chr4_4:43224635-43224654 Msa0682140:intron 45.0%
ACCTACCAACACTTTCTCCA+AGG - chr4_4:43224639-43224658 None:intergenic 45.0%
GTGCATGTTTGGTATCACAG+TGG + chr4_4:43224769-43224788 Msa0682140:intron 45.0%
!! TAACTGGTTTGCCAGACTCA+CGG - chr4_4:43224799-43224818 None:intergenic 45.0%
GAGATTGTGTGCAAAGAGTG+GGG - chr4_4:43225173-43225192 None:intergenic 45.0%
CTATACCTAGGGACAGGAAA+AGG + chr4_4:43225214-43225233 Msa0682140:intron 45.0%
GAAAAGGGTCTTAGCGAAAG+AGG + chr4_4:43225230-43225249 Msa0682140:intron 45.0%
ACTCTTGGCACACAATCTCT+AGG + chr4_4:43225376-43225395 Msa0682140:intron 45.0%
TGGCACACAATCTCTAGGTT+AGG + chr4_4:43225381-43225400 Msa0682140:intron 45.0%
GCAAAAAGAAACCAACCGAG+AGG + chr4_4:43225459-43225478 Msa0682140:intron 45.0%
! CCCCTATATGAGTTGGAGAT+AGG - chr4_4:43225535-43225554 None:intergenic 45.0%
CTCCAACTCATATAGGGGAA+AGG + chr4_4:43225537-43225556 Msa0682140:intron 45.0%
TCCCTTTCCCCTATATGAGT+TGG - chr4_4:43225542-43225561 None:intergenic 45.0%
CTCATATAGGGGAAAGGGAA+TGG + chr4_4:43225543-43225562 Msa0682140:intron 45.0%
CATATAGGGGAAAGGGAATG+GGG + chr4_4:43225545-43225564 Msa0682140:intron 45.0%
GTGACTAAGGAATGAATGCC+TGG - chr4_4:43225585-43225604 None:intergenic 45.0%
GGCATTCATTCCTTAGTCAC+GGG + chr4_4:43225585-43225604 Msa0682140:intron 45.0%
! AGCAGCTGCTTCTAAAGACT+GGG + chr4_4:43225610-43225629 Msa0682140:intron 45.0%
!! GGCGCTTATGCATGTTTTTG+GGG + chr4_4:43225764-43225783 Msa0682140:intron 45.0%
!!! GCGCTTATGCATGTTTTTGG+GGG + chr4_4:43225765-43225784 Msa0682140:intron 45.0%
! GGGGGAGCTTATGAAAGTAT+TGG + chr4_4:43225783-43225802 Msa0682140:intron 45.0%
GCTTCGTACAAGCTATTCTC+TGG - chr4_4:43225842-43225861 None:intergenic 45.0%
GTAATAGTTGTGGGTAGCAG+AGG + chr4_4:43226252-43226271 Msa0682140:intron 45.0%
! GAGAGGAAATTGGAAGTGTG+TGG + chr4_4:43226301-43226320 Msa0682140:intron 45.0%
GGGATCTCAAATAACCAGCA+AGG + chr4_4:43226338-43226357 Msa0682140:intron 45.0%
AGCGGTTTACAAGTCAAGTG+AGG + chr4_4:43226523-43226542 Msa0682140:intron 45.0%
GCGGTTTACAAGTCAAGTGA+GGG + chr4_4:43226524-43226543 Msa0682140:intron 45.0%
AAAACAGGAAGAGAGGGGAA+AGG + chr4_4:43226554-43226573 Msa0682140:intron 45.0%
AAACAGGAAGAGAGGGGAAA+GGG + chr4_4:43226555-43226574 Msa0682140:intron 45.0%
TGGCTAAGTCATGCATTGTC+TGG + chr4_4:43226592-43226611 Msa0682140:intron 45.0%
TTCAGCAATTGCTCGTACTG+TGG + chr4_4:43226844-43226863 Msa0682140:intron 45.0%
TCAGCAATTGCTCGTACTGT+GGG + chr4_4:43226845-43226864 Msa0682140:intron 45.0%
!! ACATCTATCAAAGAGTGCCG+AGG + chr4_4:43226868-43226887 Msa0682140:CDS 45.0%
TGCATAGCAACAGCCATTTC+AGG - chr4_4:43226926-43226945 None:intergenic 45.0%
GTTTCAGGCAGGAGTAATTG+AGG + chr4_4:43227059-43227078 Msa0682140:intron 45.0%
TATATCAGGGCACAATGCAG+AGG - chr4_4:43227530-43227549 None:intergenic 45.0%
!! TTATATATACAAAATAAAAT+GGG - chr4_4:43223125-43223144 None:intergenic 5.0%
!! ATTATATATACAAAATAAAA+TGG - chr4_4:43223126-43223145 None:intergenic 5.0%
!!! TTATTTTGTATATATAATTT+TGG + chr4_4:43223128-43223147 Msa0682140:five_prime_UTR 5.0%
!!! TATTTTGTATATATAATTTT+GGG + chr4_4:43223129-43223148 Msa0682140:five_prime_UTR 5.0%
! AGGTGGGTGTGTTGTTCGTA+AGG + chr4_4:43222961-43222980 Msa0682140:five_prime_UTR 50.0%
TCTGTCACTGACACCGGATA+CGG + chr4_4:43223479-43223498 Msa0682140:intron 50.0%
! GACAGTTCTAATCGAAGGCG+TGG - chr4_4:43223977-43223996 None:intergenic 50.0%
CAACACTAACACGTCAACGC+TGG - chr4_4:43224350-43224369 None:intergenic 50.0%
AACTCAACTGCGGCTGTCTA+TGG + chr4_4:43225076-43225095 Msa0682140:intron 50.0%
AACGTGCTATACCTAGGGAC+AGG + chr4_4:43225208-43225227 Msa0682140:intron 50.0%
! AAGACCCTTTTCCTGTCCCT+AGG - chr4_4:43225222-43225241 None:intergenic 50.0%
AGGGTCTTAGCGAAAGAGGT+AGG + chr4_4:43225234-43225253 Msa0682140:intron 50.0%
GGGTCTTAGCGAAAGAGGTA+GGG + chr4_4:43225235-43225254 Msa0682140:intron 50.0%
TCGCAGAAGCCTCTCTTGTT+TGG - chr4_4:43225271-43225290 None:intergenic 50.0%
! GAGCAGCTGCTTCTAAAGAC+TGG + chr4_4:43225609-43225628 Msa0682140:intron 50.0%
! TTCTAAAGACTGGGCTCCCA+AGG + chr4_4:43225619-43225638 Msa0682140:intron 50.0%
!! GGGTTTATTTGGGTTGGTCC+AGG + chr4_4:43225725-43225744 Msa0682140:intron 50.0%
TGTGTGGTCATGCAGAGACT+AGG + chr4_4:43226317-43226336 Msa0682140:intron 50.0%
GTGTGGTCATGCAGAGACTA+GGG + chr4_4:43226318-43226337 Msa0682140:intron 50.0%
CCATTTCAGGAGCCTTCATG+AGG - chr4_4:43226913-43226932 None:intergenic 50.0%
CCTCATGAAGGCTCCTGAAA+TGG + chr4_4:43226910-43226929 Msa0682140:CDS 50.0%
ACTTCTATGACTACGGGGAG+AGG - chr4_4:43227007-43227026 None:intergenic 50.0%
CACAGCTTCAGGAAGTTGTG+CGG - chr4_4:43227190-43227209 None:intergenic 50.0%
CACAACTTCCTGAAGCTGTG+AGG + chr4_4:43227190-43227209 Msa0682140:CDS 50.0%
AACTGCATGTACCTCCTCTG+CGG - chr4_4:43227247-43227266 None:intergenic 50.0%
CAGGAAGATGCTATAGCCGA+GGG + chr4_4:43227337-43227356 Msa0682140:intron 50.0%
TGACCTGACTTTAGCGAGTC+TGG - chr4_4:43227398-43227417 None:intergenic 50.0%
GTGAGTGTCAGTGCCGTATC+CGG - chr4_4:43223495-43223514 None:intergenic 55.0%
! GTTCTAATCGAAGGCGTGGC+TGG - chr4_4:43223973-43223992 None:intergenic 55.0%
GAGGCTTCTGCGACTGTCTA+TGG + chr4_4:43225278-43225297 Msa0682140:intron 55.0%
TAAGTGCACACAGCCCCTCT+CGG - chr4_4:43225477-43225496 None:intergenic 55.0%
ACAGGATGGGCACGACCTAT+AGG + chr4_4:43225899-43225918 Msa0682140:intron 55.0%
!! AAGAGAGGGGAAAGGGTGCT+TGG + chr4_4:43226562-43226581 Msa0682140:intron 55.0%
!! AGAGAGGGGAAAGGGTGCTT+GGG + chr4_4:43226563-43226582 Msa0682140:intron 55.0%
!! AAAGGGTGCTTGGGGGTAAC+TGG + chr4_4:43226572-43226591 Msa0682140:intron 55.0%
GCAGGAAGATGCTATAGCCG+AGG + chr4_4:43227336-43227355 Msa0682140:intron 55.0%
ACAGTGGCTCACCGTGAGTC+TGG + chr4_4:43224785-43224804 Msa0682140:intron 60.0%
CAGCTGCTCACCCGTGACTA+AGG - chr4_4:43225598-43225617 None:intergenic 60.0%
!! GAGAGGGGAAAGGGTGCTTG+GGG + chr4_4:43226564-43226583 Msa0682140:intron 60.0%
!! AGAGGGGAAAGGGTGCTTGG+GGG + chr4_4:43226565-43226584 Msa0682140:intron 60.0%
!! ACCTGCTCAAAGTGCCGCAG+AGG + chr4_4:43227230-43227249 Msa0682140:CDS 60.0%
TCCTCTGCGGCACTTTGAGC+AGG - chr4_4:43227234-43227253 None:intergenic 60.0%
!! TGCTCAAAGTGCCGCAGAGG+AGG + chr4_4:43227233-43227252 Msa0682140:CDS 60.0%
GGGCCAGACTCGCTAAAGTC+AGG + chr4_4:43227392-43227411 Msa0682140:CDS 60.0%
TGCACACAGCCCCTCTCGGT+TGG - chr4_4:43225473-43225492 None:intergenic 65.0%
CTACGGGGAGAGGAGAGAGC+AGG - chr4_4:43226997-43227016 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 43222924 43227706 43222924 ID=Msa0682140;Name=Msa0682140
chr4_4 mRNA 43222924 43227706 43222924 ID=Msa0682140-mRNA-1;Parent=Msa0682140;Name=Msa0682140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=239|1|1|1|1|1|6|286|227
chr4_4 exon 43222924 43223274 43222924 ID=Msa0682140-mRNA-1:exon:10433;Parent=Msa0682140-mRNA-1
chr4_4 exon 43223376 43223452 43223376 ID=Msa0682140-mRNA-1:exon:10434;Parent=Msa0682140-mRNA-1
chr4_4 exon 43224550 43224652 43224550 ID=Msa0682140-mRNA-1:exon:10435;Parent=Msa0682140-mRNA-1
chr4_4 exon 43226849 43226970 43226849 ID=Msa0682140-mRNA-1:exon:10436;Parent=Msa0682140-mRNA-1
chr4_4 exon 43227066 43227254 43227066 ID=Msa0682140-mRNA-1:exon:10437;Parent=Msa0682140-mRNA-1
chr4_4 exon 43227340 43227706 43227340 ID=Msa0682140-mRNA-1:exon:10438;Parent=Msa0682140-mRNA-1
chr4_4 five_prime_UTR 43222924 43223162 43222924 ID=Msa0682140-mRNA-1:five_prime_utr;Parent=Msa0682140-mRNA-1
chr4_4 CDS 43223163 43223274 43223163 ID=Msa0682140-mRNA-1:cds;Parent=Msa0682140-mRNA-1
chr4_4 CDS 43223376 43223452 43223376 ID=Msa0682140-mRNA-1:cds;Parent=Msa0682140-mRNA-1
chr4_4 CDS 43224550 43224652 43224550 ID=Msa0682140-mRNA-1:cds;Parent=Msa0682140-mRNA-1
chr4_4 CDS 43226849 43226970 43226849 ID=Msa0682140-mRNA-1:cds;Parent=Msa0682140-mRNA-1
chr4_4 CDS 43227066 43227254 43227066 ID=Msa0682140-mRNA-1:cds;Parent=Msa0682140-mRNA-1
chr4_4 CDS 43227340 43227420 43227340 ID=Msa0682140-mRNA-1:cds;Parent=Msa0682140-mRNA-1
chr4_4 three_prime_UTR 43227421 43227706 43227421 ID=Msa0682140-mRNA-1:three_prime_utr;Parent=Msa0682140-mRNA-1
Gene Sequence

>Msa0682140

ATGGAGAAGGTGATGAACATTCTGAAACCGAAACCAAATCCGCAACAGTTATTGAGAGATTGGCAACGTAAGCTTCGACAAGAGTGTCGAAACATTGAACGACAAATTCGCGATATTCAGAGAGAGGAGAAAAATGTGCAGAAAGCTATTAAAGAAGCTGCTAAGAGGAATGACATTGGTTCTGCAAAGGCACTCGCTACAGAACTTGTGAGATCTAGGAAAACAGTGAACCGTCTGCATGAAAATAAGGCACAACTGAACTCAATATCAATGCACCTTGGAGAAAGTGTTGCAATTGCTCGTACTGTGGGACATCTATCAAAGAGTGCCGAGGTTATGAAGCTTGTCAATAACCTCATGAAGGCTCCTGAAATGGCTGTTGCTATGCAAGAGTTCAGCAAAGAAATGACCAAGGCAGGAGTAATTGAGGAGATAGTAAACGATGCTGTTGACTCAGCATTAGATTCTGAGGACATAGAAGATGAAATAGATGAAGAAGTTGATAAAGTCTTAACTGAATTAGCTGGTGAGACAGCCGCACAACTTCCTGAAGCTGTGAGGAAACAAAAGGTGAAGCAACCTGCTCAAAGTGCCGCAGAGGAGGAAGATGCTATAGCCGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATTAGGGCCAGACTCGCTAAAGTCAGGTCATAA

Protein sequence

>Msa0682140

MEKVMNILKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDIGSAKALATELVRSRKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMAVAMQEFSKEMTKAGVIEEIVNDAVDSALDSEDIEDEIDEEVDKVLTELAGETAAQLPEAVRKQKVKQPAQSAAEEEDAIAEGVDDEEEMEEIRARLAKVRS*