AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0087800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087800 MtrunA17_Chr1g0204731 98.268 231 4 0 1 231 492 722 1.46e-169 484
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087800 AT1G04200.3 74.257 202 51 1 1 201 497 698 7.19e-105 318
Msa0087800 AT1G04200.1 73.077 208 55 1 1 207 497 704 1.31e-104 318
Msa0087800 AT1G04200.2 72.881 118 31 1 1 117 497 614 2.53e-51 176

Find 53 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTGCAGAAACTTGAAAA+TGG 0.238015 1_2:-68755274 Msa0087800:intron
GTACAAATAACTAATATATT+TGG 0.284217 1_2:+68755160 None:intergenic
TAATTGTCAATTGTCGTTCT+TGG 0.310408 1_2:-68756163 Msa0087800:CDS
ATATTAGTTATTTGTACATA+TGG 0.323783 1_2:-68755154 Msa0087800:three_prime_UTR
CACAACATGTCTGGCAACTT+TGG 0.386340 1_2:-68757079 Msa0087800:five_prime_UTR
AATTGCAGAAACTTGAAAAT+GGG 0.422881 1_2:-68755273 Msa0087800:intron
AATACAAGCTGCCAGACATA+TGG 0.427398 1_2:+68755950 None:intergenic
TCCAGTGGATTCACATTCAA+TGG 0.429298 1_2:-68755683 Msa0087800:intron
ACTTCTGAGTGTAGATCAAC+TGG 0.432018 1_2:+68755641 None:intergenic
GAGGGGAGCACATTTCAAAA+TGG 0.456497 1_2:-68755247 Msa0087800:CDS
GCAAAAGACAACTCAATTGA+AGG 0.460931 1_2:-68756822 Msa0087800:CDS
TGTCAATTGTCGTTCTTGGA+GGG 0.461882 1_2:-68756159 Msa0087800:CDS
TGTCGTTCTTGGAGGGGTGA+TGG 0.481317 1_2:-68756152 Msa0087800:CDS
CTATCTCCACACAACATGTC+TGG 0.491940 1_2:-68757088 Msa0087800:five_prime_UTR
ATCAACTGGAAACAAAGTTA+TGG 0.496495 1_2:+68755655 None:intergenic
TTGTCAATTGTCGTTCTTGG+AGG 0.499310 1_2:-68756160 Msa0087800:CDS
GTCAATTGTCGTTCTTGGAG+GGG 0.499329 1_2:-68756158 Msa0087800:CDS
ATGGATGCTCAAAGAGTTGA+TGG 0.501521 1_2:-68756218 Msa0087800:CDS
TCCGAGGCAGTGCATAAGTC+AGG 0.502883 1_2:+68756618 None:intergenic
GGCAGCTTGTATTATCCCAC+TGG 0.510955 1_2:-68755940 Msa0087800:intron
TATGGATCAAGCTGATACTC+AGG 0.512445 1_2:+68755211 None:intergenic
TGTACTAATACAAGCAGCTA+TGG 0.520713 1_2:+68755193 None:intergenic
AAACTTGAAAATGGGGTGGA+GGG 0.521462 1_2:-68755265 Msa0087800:CDS
TTGGAGGGGTGATGGAATGA+AGG 0.521901 1_2:-68756144 Msa0087800:intron
TCTGGCAACTTTGGCTAACA+TGG 0.526191 1_2:-68757070 Msa0087800:exon
AACTTGAAAATGGGGTGGAG+GGG 0.530844 1_2:-68755264 Msa0087800:CDS
AAGCGTGGATGACTCTTGTA+TGG 0.535790 1_2:+68756438 None:intergenic
GGATATCTCATCTTCATCTA+CGG 0.547062 1_2:+68755030 None:intergenic
CATATAATATGTGAGTGTAA+AGG 0.553230 1_2:-68755059 Msa0087800:three_prime_UTR
CTCAAAGAGTTGATGGTGAC+TGG 0.559695 1_2:-68756211 Msa0087800:CDS
ATACAAGCTGCCAGACATAT+GGG 0.560101 1_2:+68755951 None:intergenic
TGCGTGAGAGCATATCGAAA+AGG 0.562962 1_2:+68756998 None:intergenic
GAAACTTGAAAATGGGGTGG+AGG 0.566467 1_2:-68755266 Msa0087800:CDS
TCCTGACTTATGCACTGCCT+CGG 0.568559 1_2:-68756619 Msa0087800:CDS
TAGTGTATGCAGTAATGCAC+AGG 0.571234 1_2:-68756476 Msa0087800:CDS
TGCACTGCCTCGGAATCCTG+AGG 0.576677 1_2:-68756609 Msa0087800:intron
ATGCATATGCACTCAAACGA+TGG 0.579561 1_2:+68757037 None:intergenic
GACAATTGACAATTATCACT+TGG 0.582059 1_2:+68756171 None:intergenic
AGATTTACACCGACTTCTTG+AGG 0.588529 1_2:-68756667 Msa0087800:CDS
AAACAGCTTTGTAGATGATG+TGG 0.603825 1_2:-68756799 Msa0087800:intron
GTATGCAGTAATGCACAGGC+AGG 0.611073 1_2:-68756472 Msa0087800:CDS
TTCGATCAACAGCATTAGTG+AGG 0.611239 1_2:+68754924 None:intergenic
GTCAGCGCTTATTCAATACA+TGG 0.611850 1_2:+68755009 None:intergenic
TAGTACAAGCCTCAAGAAGT+CGG 0.626371 1_2:+68756658 None:intergenic
AATCAAACCTCAGGATTCCG+AGG 0.640879 1_2:+68756602 None:intergenic
GCACTCAAACGATGGACATG+AGG 0.645187 1_2:+68757045 None:intergenic
TCAAGTAGTTCATGGAAGCG+TGG 0.667155 1_2:+68756423 None:intergenic
GCAGAAACTTGAAAATGGGG+TGG 0.670526 1_2:-68755269 Msa0087800:intron
TGCTTGTATTAGTACAAATG+TGG 0.670885 1_2:-68755186 Msa0087800:three_prime_UTR
ATTGCAGAAACTTGAAAATG+GGG 0.695036 1_2:-68755272 Msa0087800:intron
AAGTTGCCAGACATGTTGTG+TGG 0.696150 1_2:+68757082 None:intergenic
AACAGCATTAGTGAGGACTG+AGG 0.749833 1_2:+68754931 None:intergenic
TGAACAAGAGAGACACCCTG+AGG 0.796957 1_2:-68755984 Msa0087800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATATATATACCATCT+TGG - chr1_2:68755184-68755203 Msa0087800:three_prime_UTR 15.0%
!! AATATATCATAGAATTTAAG+AGG - chr1_2:68755883-68755902 Msa0087800:intron 15.0%
!!! TTATATTATTGCTTTTATGA+TGG - chr1_2:68756461-68756480 Msa0087800:CDS 15.0%
!! GTACAAATAACTAATATATT+TGG + chr1_2:68756802-68756821 None:intergenic 15.0%
!! ATATTAGTTATTTGTACATA+TGG - chr1_2:68756805-68756824 Msa0087800:CDS 15.0%
!!! AACATTTTTGTTACAATTTA+TGG - chr1_2:68757096-68757115 Msa0087800:five_prime_UTR 15.0%
!! ATATAATATATATACCATCT+TGG - chr1_2:68755184-68755203 Msa0087800:three_prime_UTR 15.0%
!! AATATATCATAGAATTTAAG+AGG - chr1_2:68755883-68755902 Msa0087800:intron 15.0%
!!! TTATATTATTGCTTTTATGA+TGG - chr1_2:68756461-68756480 Msa0087800:CDS 15.0%
!! GTACAAATAACTAATATATT+TGG + chr1_2:68756802-68756821 None:intergenic 15.0%
!! ATATTAGTTATTTGTACATA+TGG - chr1_2:68756805-68756824 Msa0087800:CDS 15.0%
!!! CTAAAAGGTATAAATTTGAA+TGG + chr1_2:68755023-68755042 None:intergenic 20.0%
!! AGAATACTCAATTTAGAAAA+AGG + chr1_2:68755249-68755268 None:intergenic 20.0%
!!! TTCTAAATTGAGTATTCTTT+TGG - chr1_2:68755251-68755270 Msa0087800:CDS 20.0%
!!! AACGTAAATTTTAACTGTTT+TGG + chr1_2:68755434-68755453 None:intergenic 20.0%
!! AACAGTTAAAATTTACGTTA+CGG - chr1_2:68755435-68755454 Msa0087800:intron 20.0%
!!! TATGTGACTCTATTTTTTTT+TGG - chr1_2:68755923-68755942 Msa0087800:intron 20.0%
!!! CTAAAAGGTATAAATTTGAA+TGG + chr1_2:68755023-68755042 None:intergenic 20.0%
!! AGAATACTCAATTTAGAAAA+AGG + chr1_2:68755249-68755268 None:intergenic 20.0%
!!! TTCTAAATTGAGTATTCTTT+TGG - chr1_2:68755251-68755270 Msa0087800:CDS 20.0%
!!! AACGTAAATTTTAACTGTTT+TGG + chr1_2:68755434-68755453 None:intergenic 20.0%
!! AACAGTTAAAATTTACGTTA+CGG - chr1_2:68755435-68755454 Msa0087800:intron 20.0%
!!! TATGTGACTCTATTTTTTTT+TGG - chr1_2:68755923-68755942 Msa0087800:intron 20.0%
! TTACAAAGGTAAAGAAAGAA+GGG + chr1_2:68754996-68755015 None:intergenic 25.0%
! ATTACAAAGGTAAAGAAAGA+AGG + chr1_2:68754997-68755016 None:intergenic 25.0%
! ATTTGAATGGTACATTACAA+AGG + chr1_2:68755010-68755029 None:intergenic 25.0%
!!! AAATGTTTTCAAGTAGTTCA+TGG + chr1_2:68755547-68755566 None:intergenic 25.0%
! AGAATTTGCAAGGTTTAAAA+GGG + chr1_2:68755619-68755638 None:intergenic 25.0%
! TAGAATTTGCAAGGTTTAAA+AGG + chr1_2:68755620-68755639 None:intergenic 25.0%
! TGTATCTATTGAATATTTGC+AGG - chr1_2:68755695-68755714 Msa0087800:intron 25.0%
! GGAAATAATATTGTGATTTG+TGG - chr1_2:68755844-68755863 Msa0087800:intron 25.0%
! TTCTATGATATATTCCGTAA+TGG + chr1_2:68755877-68755896 None:intergenic 25.0%
!! TTCTTATTCACATTTTCTTG+AGG - chr1_2:68756057-68756076 Msa0087800:intron 25.0%
! GTTAAGTGTAAAATATTGAC+TGG + chr1_2:68756086-68756105 None:intergenic 25.0%
!!! ACTGCATTTTTTTTCTTTCT+TGG - chr1_2:68756419-68756438 Msa0087800:CDS 25.0%
!!! CTGCATTTTTTTTCTTTCTT+GGG - chr1_2:68756420-68756439 Msa0087800:CDS 25.0%
! AATTGCAGAAACTTGAAAAT+GGG - chr1_2:68756686-68756705 Msa0087800:intron 25.0%
! CATATAATATGTGAGTGTAA+AGG - chr1_2:68756900-68756919 Msa0087800:intron 25.0%
! TTACAAAGGTAAAGAAAGAA+GGG + chr1_2:68754996-68755015 None:intergenic 25.0%
! ATTACAAAGGTAAAGAAAGA+AGG + chr1_2:68754997-68755016 None:intergenic 25.0%
! ATTTGAATGGTACATTACAA+AGG + chr1_2:68755010-68755029 None:intergenic 25.0%
!!! AAATGTTTTCAAGTAGTTCA+TGG + chr1_2:68755547-68755566 None:intergenic 25.0%
! AGAATTTGCAAGGTTTAAAA+GGG + chr1_2:68755619-68755638 None:intergenic 25.0%
! TAGAATTTGCAAGGTTTAAA+AGG + chr1_2:68755620-68755639 None:intergenic 25.0%
! TGTATCTATTGAATATTTGC+AGG - chr1_2:68755695-68755714 Msa0087800:intron 25.0%
! GGAAATAATATTGTGATTTG+TGG - chr1_2:68755844-68755863 Msa0087800:intron 25.0%
! TTCTATGATATATTCCGTAA+TGG + chr1_2:68755877-68755896 None:intergenic 25.0%
!! TTCTTATTCACATTTTCTTG+AGG - chr1_2:68756057-68756076 Msa0087800:intron 25.0%
! GTTAAGTGTAAAATATTGAC+TGG + chr1_2:68756086-68756105 None:intergenic 25.0%
!!! ACTGCATTTTTTTTCTTTCT+TGG - chr1_2:68756419-68756438 Msa0087800:CDS 25.0%
!!! CTGCATTTTTTTTCTTTCTT+GGG - chr1_2:68756420-68756439 Msa0087800:CDS 25.0%
! AATTGCAGAAACTTGAAAAT+GGG - chr1_2:68756686-68756705 Msa0087800:intron 25.0%
! CATATAATATGTGAGTGTAA+AGG - chr1_2:68756900-68756919 Msa0087800:intron 25.0%
ACTCAATTTAGAAAAAGGAG+TGG + chr1_2:68755244-68755263 None:intergenic 30.0%
AGAAAATCAAATCAAACCTC+AGG + chr1_2:68755369-68755388 None:intergenic 30.0%
!! GTTTTGGACTAGACAAAAAT+AGG + chr1_2:68755418-68755437 None:intergenic 30.0%
ATGCTCTATTAGAATTTGCA+AGG + chr1_2:68755629-68755648 None:intergenic 30.0%
!!! AGATTTTTTCAATGCTCGTA+TGG - chr1_2:68755722-68755741 Msa0087800:intron 30.0%
GACAATTGACAATTATCACT+TGG + chr1_2:68755791-68755810 None:intergenic 30.0%
TAATTGTCAATTGTCGTTCT+TGG - chr1_2:68755796-68755815 Msa0087800:intron 30.0%
!!! AGTTTTTTATCCCATATGTC+TGG - chr1_2:68755998-68756017 Msa0087800:CDS 30.0%
GCAGAGTGAAAAAAATATAG+CGG + chr1_2:68756228-68756247 None:intergenic 30.0%
ATCAACTGGAAACAAAGTTA+TGG + chr1_2:68756307-68756326 None:intergenic 30.0%
TACACATACACAAACAGAAA+AGG + chr1_2:68756360-68756379 None:intergenic 30.0%
TTTCTGTTTGTGTATGTGTA+TGG - chr1_2:68756360-68756379 Msa0087800:intron 30.0%
!!! CTTTTATGATGGATAAATGC+TGG - chr1_2:68756472-68756491 Msa0087800:CDS 30.0%
TTGTCAAACATACTAGACTT+AGG + chr1_2:68756572-68756591 None:intergenic 30.0%
CAAATCAATGACCAAAACAA+GGG + chr1_2:68756657-68756676 None:intergenic 30.0%
ACAAATCAATGACCAAAACA+AGG + chr1_2:68756658-68756677 None:intergenic 30.0%
GAATTGCAGAAACTTGAAAA+TGG - chr1_2:68756685-68756704 Msa0087800:intron 30.0%
ATTGCAGAAACTTGAAAATG+GGG - chr1_2:68756687-68756706 Msa0087800:intron 30.0%
TGCTTGTATTAGTACAAATG+TGG - chr1_2:68756773-68756792 Msa0087800:intron 30.0%
ACTCAATTTAGAAAAAGGAG+TGG + chr1_2:68755244-68755263 None:intergenic 30.0%
AGAAAATCAAATCAAACCTC+AGG + chr1_2:68755369-68755388 None:intergenic 30.0%
!! GTTTTGGACTAGACAAAAAT+AGG + chr1_2:68755418-68755437 None:intergenic 30.0%
ATGCTCTATTAGAATTTGCA+AGG + chr1_2:68755629-68755648 None:intergenic 30.0%
!!! AGATTTTTTCAATGCTCGTA+TGG - chr1_2:68755722-68755741 Msa0087800:intron 30.0%
GACAATTGACAATTATCACT+TGG + chr1_2:68755791-68755810 None:intergenic 30.0%
TAATTGTCAATTGTCGTTCT+TGG - chr1_2:68755796-68755815 Msa0087800:intron 30.0%
!!! AGTTTTTTATCCCATATGTC+TGG - chr1_2:68755998-68756017 Msa0087800:CDS 30.0%
GCAGAGTGAAAAAAATATAG+CGG + chr1_2:68756228-68756247 None:intergenic 30.0%
ATCAACTGGAAACAAAGTTA+TGG + chr1_2:68756307-68756326 None:intergenic 30.0%
TACACATACACAAACAGAAA+AGG + chr1_2:68756360-68756379 None:intergenic 30.0%
TTTCTGTTTGTGTATGTGTA+TGG - chr1_2:68756360-68756379 Msa0087800:intron 30.0%
!!! CTTTTATGATGGATAAATGC+TGG - chr1_2:68756472-68756491 Msa0087800:CDS 30.0%
TTGTCAAACATACTAGACTT+AGG + chr1_2:68756572-68756591 None:intergenic 30.0%
CAAATCAATGACCAAAACAA+GGG + chr1_2:68756657-68756676 None:intergenic 30.0%
ACAAATCAATGACCAAAACA+AGG + chr1_2:68756658-68756677 None:intergenic 30.0%
GAATTGCAGAAACTTGAAAA+TGG - chr1_2:68756685-68756704 Msa0087800:intron 30.0%
ATTGCAGAAACTTGAAAATG+GGG - chr1_2:68756687-68756706 Msa0087800:intron 30.0%
TGCTTGTATTAGTACAAATG+TGG - chr1_2:68756773-68756792 Msa0087800:intron 30.0%
!! CAGAGAAAACAAGCTCTAAA+AGG + chr1_2:68755038-68755057 None:intergenic 35.0%
!!! CTTTTAGAGCTTGTTTTCTC+TGG - chr1_2:68755036-68755055 Msa0087800:three_prime_UTR 35.0%
CAATATTCTTGCTTCTCATC+AGG - chr1_2:68755072-68755091 Msa0087800:three_prime_UTR 35.0%
GCAAAAGACAACTCAATTGA+AGG - chr1_2:68755137-68755156 Msa0087800:three_prime_UTR 35.0%
! AAACAGCTTTGTAGATGATG+TGG - chr1_2:68755160-68755179 Msa0087800:three_prime_UTR 35.0%
! GGTCTAAAGTTTGTGATCAA+TGG + chr1_2:68755223-68755242 None:intergenic 35.0%
ACGGTATTGCTTTATGTGAT+TGG - chr1_2:68755454-68755473 Msa0087800:intron 35.0%
! GTGATGGAATGAAGGTAATA+AGG - chr1_2:68755823-68755842 Msa0087800:intron 35.0%
AAATAGAGTCACATAGAAGC+AGG + chr1_2:68755918-68755937 None:intergenic 35.0%
ATGGGATAAAAAACTCCTCA+GGG + chr1_2:68755993-68756012 None:intergenic 35.0%
TATGGGATAAAAAACTCCTC+AGG + chr1_2:68755994-68756013 None:intergenic 35.0%
ATGCAATGCATATAGTTGTG+TGG + chr1_2:68756602-68756621 None:intergenic 35.0%
!! ACTGATTTCTTCCCTTGTTT+TGG - chr1_2:68756643-68756662 Msa0087800:CDS 35.0%
TGTACTAATACAAGCAGCTA+TGG + chr1_2:68756769-68756788 None:intergenic 35.0%
GGATATCTCATCTTCATCTA+CGG + chr1_2:68756932-68756951 None:intergenic 35.0%
!! CAGAGAAAACAAGCTCTAAA+AGG + chr1_2:68755038-68755057 None:intergenic 35.0%
!!! CTTTTAGAGCTTGTTTTCTC+TGG - chr1_2:68755036-68755055 Msa0087800:three_prime_UTR 35.0%
CAATATTCTTGCTTCTCATC+AGG - chr1_2:68755072-68755091 Msa0087800:three_prime_UTR 35.0%
GCAAAAGACAACTCAATTGA+AGG - chr1_2:68755137-68755156 Msa0087800:three_prime_UTR 35.0%
! AAACAGCTTTGTAGATGATG+TGG - chr1_2:68755160-68755179 Msa0087800:three_prime_UTR 35.0%
! GGTCTAAAGTTTGTGATCAA+TGG + chr1_2:68755223-68755242 None:intergenic 35.0%
ACGGTATTGCTTTATGTGAT+TGG - chr1_2:68755454-68755473 Msa0087800:intron 35.0%
! GTGATGGAATGAAGGTAATA+AGG - chr1_2:68755823-68755842 Msa0087800:intron 35.0%
AAATAGAGTCACATAGAAGC+AGG + chr1_2:68755918-68755937 None:intergenic 35.0%
ATGGGATAAAAAACTCCTCA+GGG + chr1_2:68755993-68756012 None:intergenic 35.0%
TATGGGATAAAAAACTCCTC+AGG + chr1_2:68755994-68756013 None:intergenic 35.0%
ATGCAATGCATATAGTTGTG+TGG + chr1_2:68756602-68756621 None:intergenic 35.0%
!! ACTGATTTCTTCCCTTGTTT+TGG - chr1_2:68756643-68756662 Msa0087800:CDS 35.0%
TGTACTAATACAAGCAGCTA+TGG + chr1_2:68756769-68756788 None:intergenic 35.0%
GGATATCTCATCTTCATCTA+CGG + chr1_2:68756932-68756951 None:intergenic 35.0%
ATGCATATGCACTCAAACGA+TGG + chr1_2:68754925-68754944 None:intergenic 40.0%
!! AGATTTACACCGACTTCTTG+AGG - chr1_2:68755292-68755311 Msa0087800:intron 40.0%
TAGTACAAGCCTCAAGAAGT+CGG + chr1_2:68755304-68755323 None:intergenic 40.0%
TTGCTTTATGTGATTGGAGC+AGG - chr1_2:68755460-68755479 Msa0087800:intron 40.0%
TAGTGTATGCAGTAATGCAC+AGG - chr1_2:68755483-68755502 Msa0087800:intron 40.0%
ATGGATGCTCAAAGAGTTGA+TGG - chr1_2:68755741-68755760 Msa0087800:intron 40.0%
TTGTCAATTGTCGTTCTTGG+AGG - chr1_2:68755799-68755818 Msa0087800:intron 40.0%
TGTCAATTGTCGTTCTTGGA+GGG - chr1_2:68755800-68755819 Msa0087800:intron 40.0%
ATACAAGCTGCCAGACATAT+GGG + chr1_2:68756011-68756030 None:intergenic 40.0%
AATACAAGCTGCCAGACATA+TGG + chr1_2:68756012-68756031 None:intergenic 40.0%
!! CAGCTCAATCAAGAGTATTG+AGG - chr1_2:68756105-68756124 Msa0087800:intron 40.0%
ATTGAGGCTTGAGATACACT+AGG - chr1_2:68756121-68756140 Msa0087800:intron 40.0%
CTTGAGATACACTAGGTCTA+GGG - chr1_2:68756128-68756147 Msa0087800:intron 40.0%
TTGAGATACACTAGGTCTAG+GGG - chr1_2:68756129-68756148 Msa0087800:intron 40.0%
AAAATTTGTGTCACCTCCAG+TGG - chr1_2:68756261-68756280 Msa0087800:intron 40.0%
ATTGAATGTGAATCCACTGG+AGG + chr1_2:68756277-68756296 None:intergenic 40.0%
! TCCAGTGGATTCACATTCAA+TGG - chr1_2:68756276-68756295 Msa0087800:intron 40.0%
TCCATTGAATGTGAATCCAC+TGG + chr1_2:68756280-68756299 None:intergenic 40.0%
ACTTCTGAGTGTAGATCAAC+TGG + chr1_2:68756321-68756340 None:intergenic 40.0%
AAACTTGAAAATGGGGTGGA+GGG - chr1_2:68756694-68756713 Msa0087800:intron 40.0%
TATGGATCAAGCTGATACTC+AGG + chr1_2:68756751-68756770 None:intergenic 40.0%
GTCAGCGCTTATTCAATACA+TGG + chr1_2:68756953-68756972 None:intergenic 40.0%
! ACAGCTTTTGTAGATGTGCT+CGG - chr1_2:68757000-68757019 Msa0087800:CDS 40.0%
TTCGATCAACAGCATTAGTG+AGG + chr1_2:68757038-68757057 None:intergenic 40.0%
ATGCATATGCACTCAAACGA+TGG + chr1_2:68754925-68754944 None:intergenic 40.0%
!! AGATTTACACCGACTTCTTG+AGG - chr1_2:68755292-68755311 Msa0087800:intron 40.0%
TAGTACAAGCCTCAAGAAGT+CGG + chr1_2:68755304-68755323 None:intergenic 40.0%
TTGCTTTATGTGATTGGAGC+AGG - chr1_2:68755460-68755479 Msa0087800:intron 40.0%
TAGTGTATGCAGTAATGCAC+AGG - chr1_2:68755483-68755502 Msa0087800:intron 40.0%
ATGGATGCTCAAAGAGTTGA+TGG - chr1_2:68755741-68755760 Msa0087800:intron 40.0%
TTGTCAATTGTCGTTCTTGG+AGG - chr1_2:68755799-68755818 Msa0087800:intron 40.0%
TGTCAATTGTCGTTCTTGGA+GGG - chr1_2:68755800-68755819 Msa0087800:intron 40.0%
ATACAAGCTGCCAGACATAT+GGG + chr1_2:68756011-68756030 None:intergenic 40.0%
AATACAAGCTGCCAGACATA+TGG + chr1_2:68756012-68756031 None:intergenic 40.0%
!! CAGCTCAATCAAGAGTATTG+AGG - chr1_2:68756105-68756124 Msa0087800:intron 40.0%
ATTGAGGCTTGAGATACACT+AGG - chr1_2:68756121-68756140 Msa0087800:intron 40.0%
CTTGAGATACACTAGGTCTA+GGG - chr1_2:68756128-68756147 Msa0087800:intron 40.0%
TTGAGATACACTAGGTCTAG+GGG - chr1_2:68756129-68756148 Msa0087800:intron 40.0%
AAAATTTGTGTCACCTCCAG+TGG - chr1_2:68756261-68756280 Msa0087800:intron 40.0%
ATTGAATGTGAATCCACTGG+AGG + chr1_2:68756277-68756296 None:intergenic 40.0%
! TCCAGTGGATTCACATTCAA+TGG - chr1_2:68756276-68756295 Msa0087800:intron 40.0%
TCCATTGAATGTGAATCCAC+TGG + chr1_2:68756280-68756299 None:intergenic 40.0%
ACTTCTGAGTGTAGATCAAC+TGG + chr1_2:68756321-68756340 None:intergenic 40.0%
AAACTTGAAAATGGGGTGGA+GGG - chr1_2:68756694-68756713 Msa0087800:intron 40.0%
TATGGATCAAGCTGATACTC+AGG + chr1_2:68756751-68756770 None:intergenic 40.0%
GTCAGCGCTTATTCAATACA+TGG + chr1_2:68756953-68756972 None:intergenic 40.0%
! ACAGCTTTTGTAGATGTGCT+CGG - chr1_2:68757000-68757019 Msa0087800:CDS 40.0%
TTCGATCAACAGCATTAGTG+AGG + chr1_2:68757038-68757057 None:intergenic 40.0%
CTATCTCCACACAACATGTC+TGG - chr1_2:68754871-68754890 Msa0087800:three_prime_UTR 45.0%
AAGTTGCCAGACATGTTGTG+TGG + chr1_2:68754880-68754899 None:intergenic 45.0%
CACAACATGTCTGGCAACTT+TGG - chr1_2:68754880-68754899 Msa0087800:three_prime_UTR 45.0%
TCTGGCAACTTTGGCTAACA+TGG - chr1_2:68754889-68754908 Msa0087800:three_prime_UTR 45.0%
! TGCGTGAGAGCATATCGAAA+AGG + chr1_2:68754964-68754983 None:intergenic 45.0%
!! GTGTCACAAAAGCACCAAGA+TGG + chr1_2:68755201-68755220 None:intergenic 45.0%
AATCAAACCTCAGGATTCCG+AGG + chr1_2:68755360-68755379 None:intergenic 45.0%
AAGCGTGGATGACTCTTGTA+TGG + chr1_2:68755524-68755543 None:intergenic 45.0%
TCAAGTAGTTCATGGAAGCG+TGG + chr1_2:68755539-68755558 None:intergenic 45.0%
!! CTCAAAGAGTTGATGGTGAC+TGG - chr1_2:68755748-68755767 Msa0087800:intron 45.0%
GTCAATTGTCGTTCTTGGAG+GGG - chr1_2:68755801-68755820 Msa0087800:intron 45.0%
TTTGTGGTGCGCTTCCATTA+CGG - chr1_2:68755860-68755879 Msa0087800:intron 45.0%
! GCTCAAAGAAGCATACCAGT+GGG + chr1_2:68756037-68756056 None:intergenic 45.0%
! AGCTCAAAGAAGCATACCAG+TGG + chr1_2:68756038-68756057 None:intergenic 45.0%
GCTTGAGATACACTAGGTCT+AGG - chr1_2:68756127-68756146 Msa0087800:intron 45.0%
GCAGAAACTTGAAAATGGGG+TGG - chr1_2:68756690-68756709 Msa0087800:intron 45.0%
GAAACTTGAAAATGGGGTGG+AGG - chr1_2:68756693-68756712 Msa0087800:intron 45.0%
AACTTGAAAATGGGGTGGAG+GGG - chr1_2:68756695-68756714 Msa0087800:intron 45.0%
! GAGGGGAGCACATTTCAAAA+TGG - chr1_2:68756712-68756731 Msa0087800:intron 45.0%
AACAGCATTAGTGAGGACTG+AGG + chr1_2:68757031-68757050 None:intergenic 45.0%
CTATCTCCACACAACATGTC+TGG - chr1_2:68754871-68754890 Msa0087800:three_prime_UTR 45.0%
AAGTTGCCAGACATGTTGTG+TGG + chr1_2:68754880-68754899 None:intergenic 45.0%
CACAACATGTCTGGCAACTT+TGG - chr1_2:68754880-68754899 Msa0087800:three_prime_UTR 45.0%
TCTGGCAACTTTGGCTAACA+TGG - chr1_2:68754889-68754908 Msa0087800:three_prime_UTR 45.0%
! TGCGTGAGAGCATATCGAAA+AGG + chr1_2:68754964-68754983 None:intergenic 45.0%
!! GTGTCACAAAAGCACCAAGA+TGG + chr1_2:68755201-68755220 None:intergenic 45.0%
AATCAAACCTCAGGATTCCG+AGG + chr1_2:68755360-68755379 None:intergenic 45.0%
AAGCGTGGATGACTCTTGTA+TGG + chr1_2:68755524-68755543 None:intergenic 45.0%
TCAAGTAGTTCATGGAAGCG+TGG + chr1_2:68755539-68755558 None:intergenic 45.0%
!! CTCAAAGAGTTGATGGTGAC+TGG - chr1_2:68755748-68755767 Msa0087800:intron 45.0%
GTCAATTGTCGTTCTTGGAG+GGG - chr1_2:68755801-68755820 Msa0087800:intron 45.0%
TTTGTGGTGCGCTTCCATTA+CGG - chr1_2:68755860-68755879 Msa0087800:intron 45.0%
! GCTCAAAGAAGCATACCAGT+GGG + chr1_2:68756037-68756056 None:intergenic 45.0%
! AGCTCAAAGAAGCATACCAG+TGG + chr1_2:68756038-68756057 None:intergenic 45.0%
GCTTGAGATACACTAGGTCT+AGG - chr1_2:68756127-68756146 Msa0087800:intron 45.0%
GCAGAAACTTGAAAATGGGG+TGG - chr1_2:68756690-68756709 Msa0087800:intron 45.0%
GAAACTTGAAAATGGGGTGG+AGG - chr1_2:68756693-68756712 Msa0087800:intron 45.0%
AACTTGAAAATGGGGTGGAG+GGG - chr1_2:68756695-68756714 Msa0087800:intron 45.0%
! GAGGGGAGCACATTTCAAAA+TGG - chr1_2:68756712-68756731 Msa0087800:intron 45.0%
AACAGCATTAGTGAGGACTG+AGG + chr1_2:68757031-68757050 None:intergenic 45.0%
!! TTAAATATATATTAAACATA+CGG + chr1_2:68755573-68755592 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAACAT+TGG + chr1_2:68756202-68756221 None:intergenic 5.0%
!! TTAAATATATATTAAACATA+CGG + chr1_2:68755573-68755592 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAACAT+TGG + chr1_2:68756202-68756221 None:intergenic 5.0%
GCACTCAAACGATGGACATG+AGG + chr1_2:68754917-68754936 None:intergenic 50.0%
TCCTGACTTATGCACTGCCT+CGG - chr1_2:68755340-68755359 Msa0087800:intron 50.0%
GTATGCAGTAATGCACAGGC+AGG - chr1_2:68755487-68755506 Msa0087800:intron 50.0%
!! TTGGAGGGGTGATGGAATGA+AGG - chr1_2:68755815-68755834 Msa0087800:intron 50.0%
TGAACAAGAGAGACACCCTG+AGG - chr1_2:68755975-68755994 Msa0087800:CDS 50.0%
GGCAGCTTGTATTATCCCAC+TGG - chr1_2:68756019-68756038 Msa0087800:intron 50.0%
GCACTCAAACGATGGACATG+AGG + chr1_2:68754917-68754936 None:intergenic 50.0%
TCCTGACTTATGCACTGCCT+CGG - chr1_2:68755340-68755359 Msa0087800:intron 50.0%
GTATGCAGTAATGCACAGGC+AGG - chr1_2:68755487-68755506 Msa0087800:intron 50.0%
!! TTGGAGGGGTGATGGAATGA+AGG - chr1_2:68755815-68755834 Msa0087800:intron 50.0%
TGAACAAGAGAGACACCCTG+AGG - chr1_2:68755975-68755994 Msa0087800:CDS 50.0%
GGCAGCTTGTATTATCCCAC+TGG - chr1_2:68756019-68756038 Msa0087800:intron 50.0%
TCCGAGGCAGTGCATAAGTC+AGG + chr1_2:68755344-68755363 None:intergenic 55.0%
TGTCGTTCTTGGAGGGGTGA+TGG - chr1_2:68755807-68755826 Msa0087800:intron 55.0%
TCCGAGGCAGTGCATAAGTC+AGG + chr1_2:68755344-68755363 None:intergenic 55.0%
TGTCGTTCTTGGAGGGGTGA+TGG - chr1_2:68755807-68755826 Msa0087800:intron 55.0%
TGCACTGCCTCGGAATCCTG+AGG - chr1_2:68755350-68755369 Msa0087800:intron 60.0%
TGCACTGCCTCGGAATCCTG+AGG - chr1_2:68755350-68755369 Msa0087800:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 68754865 68757116 68754865 ID=Msa0087800;Name=Msa0087800
chr1_2 mRNA 68754865 68757116 68754865 ID=Msa0087800-mRNA-1;Parent=Msa0087800;Name=Msa0087800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=43|1|1|1|1|1|8|345|231
chr1_2 exon 68754865 68755287 68754865 ID=Msa0087800-mRNA-1:exon:23587;Parent=Msa0087800-mRNA-1
chr1_2 exon 68755643 68755700 68755643 ID=Msa0087800-mRNA-1:exon:23586;Parent=Msa0087800-mRNA-1
chr1_2 exon 68755941 68756032 68755941 ID=Msa0087800-mRNA-1:exon:23585;Parent=Msa0087800-mRNA-1
chr1_2 exon 68756145 68756264 68756145 ID=Msa0087800-mRNA-1:exon:23584;Parent=Msa0087800-mRNA-1
chr1_2 exon 68756410 68756499 68756410 ID=Msa0087800-mRNA-1:exon:23583;Parent=Msa0087800-mRNA-1
chr1_2 exon 68756610 68756702 68756610 ID=Msa0087800-mRNA-1:exon:23582;Parent=Msa0087800-mRNA-1
chr1_2 exon 68756800 68756887 68756800 ID=Msa0087800-mRNA-1:exon:23581;Parent=Msa0087800-mRNA-1
chr1_2 exon 68756997 68757116 68756997 ID=Msa0087800-mRNA-1:exon:23580;Parent=Msa0087800-mRNA-1
chr1_2 five_prime_UTR 68757074 68757116 68757074 ID=Msa0087800-mRNA-1:five_prime_utr;Parent=Msa0087800-mRNA-1
chr1_2 CDS 68756997 68757073 68756997 ID=Msa0087800-mRNA-1:cds;Parent=Msa0087800-mRNA-1
chr1_2 CDS 68756800 68756887 68756800 ID=Msa0087800-mRNA-1:cds;Parent=Msa0087800-mRNA-1
chr1_2 CDS 68756610 68756702 68756610 ID=Msa0087800-mRNA-1:cds;Parent=Msa0087800-mRNA-1
chr1_2 CDS 68756410 68756499 68756410 ID=Msa0087800-mRNA-1:cds;Parent=Msa0087800-mRNA-1
chr1_2 CDS 68756145 68756264 68756145 ID=Msa0087800-mRNA-1:cds;Parent=Msa0087800-mRNA-1
chr1_2 CDS 68755941 68756032 68755941 ID=Msa0087800-mRNA-1:cds;Parent=Msa0087800-mRNA-1
chr1_2 CDS 68755643 68755700 68755643 ID=Msa0087800-mRNA-1:cds;Parent=Msa0087800-mRNA-1
chr1_2 CDS 68755210 68755287 68755210 ID=Msa0087800-mRNA-1:cds;Parent=Msa0087800-mRNA-1
chr1_2 three_prime_UTR 68754865 68755209 68754865 ID=Msa0087800-mRNA-1:three_prime_utr;Parent=Msa0087800-mRNA-1
Gene Sequence

>Msa0087800

ATGGCACCTCATGTCCATCGTTTGAGTGCATATGCATCTCAGAGACTAGTCAGCCTTTTCGATATGCTCTCACGCAAGTATAACAAATTAGCTGATCGCAGAGATAATAAGCTTCATATTGCAAAAGACAACTCAATTGAAGGAAACAGCTTTGTAGATGATGTGTCAACTGAAATGCAGATTTACACCGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTGCCTCGGAATCCTGAGGTAGTGTATGCAGTAATGCACAGGCAGGAAGTCTTTCAGCCATACAAGAGTCATCCACGCTTCCATGAACTACTTGAAAACATTTATACCGTATTAGATTTTTTCAATGCTCGTATGGATGCTCAAAGAGTTGATGGTGACTGGTCAGTCAATGAAGTGCTCCAAGTGATAATTGTCAATTGTCGTTCTTGGAGGGGTGATGGAATGAAGATGTTTACTCAACTGCGCTTCATGTATGAACAAGAGAGACACCCTGAGGAGTTTTTTATCCCATATGTCTGGCAGCTTGTATTATCCCACTGTGGATTCACATTCAATGGAGAAGCCATAACTTTGTTTCCAGTTGATCTACACTCAGAAAAACTTGAAAATGGGGTGGAGGGGAGCACATTTCAAAATGGCGATTTTGACAAGCCTGAGTATCAGCTTGATCCATAG

Protein sequence

>Msa0087800

MAPHVHRLSAYASQRLVSLFDMLSRKYNKLADRRDNKLHIAKDNSIEGNSFVDDVSTEMQIYTDFLRLVLEIINAILTYALPRNPEVVYAVMHRQEVFQPYKSHPRFHELLENIYTVLDFFNARMDAQRVDGDWSVNEVLQVIIVNCRSWRGDGMKMFTQLRFMYEQERHPEEFFIPYVWQLVLSHCGFTFNGEAITLFPVDLHSEKLENGVEGSTFQNGDFDKPEYQLDP*