AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0227510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227510 MtrunA17_Chr2g0331241 89.222 334 21 2 48 381 1 319 0.0 587
Msa0227510 MtrunA17_Chr1g0163701 82.222 90 16 0 111 200 79 168 3.08e-39 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227510 AT3G16230.7 39.634 328 123 8 48 374 1 254 5.19e-57 191
Msa0227510 AT3G16230.4 39.634 328 123 8 48 374 1 254 5.19e-57 191
Msa0227510 AT3G16230.6 39.634 328 123 8 48 374 1 254 5.19e-57 191
Msa0227510 AT3G16230.9 39.634 328 123 8 48 374 1 254 5.19e-57 191
Msa0227510 AT3G16230.5 39.634 328 123 8 48 374 1 254 5.63e-57 191
Msa0227510 AT3G16230.11 39.634 328 123 8 48 374 1 254 5.63e-57 191
Msa0227510 AT3G16230.8 39.634 328 123 8 48 374 1 254 5.63e-57 191
Msa0227510 AT3G16230.10 39.634 328 123 8 48 374 1 254 8.64e-56 189
Msa0227510 AT3G16230.2 39.634 328 123 8 48 374 1 254 8.64e-56 189
Msa0227510 AT3G16230.1 39.634 328 123 8 48 374 1 254 8.64e-56 189
Msa0227510 AT3G16230.3 42.143 280 94 6 96 374 2 214 1.30e-52 180
Msa0227510 AT3G16230.12 42.143 280 94 6 96 374 2 214 1.30e-52 180
Msa0227510 AT3G16230.13 51.724 145 54 1 230 374 2 130 1.88e-36 135

Find 63 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAACCCTATACACTTTC+AGG 0.149160 2_1:-78767048 Msa0227510:intron
GATTAACTTTAACTGATTTA+CGG 0.287608 2_1:+78763044 None:intergenic
AATCAAAATTGTTCGTAAAC+TGG 0.298281 2_1:+78767248 None:intergenic
TGCTAGTTCCAGCCAATTGC+AGG 0.300811 2_1:-78765979 Msa0227510:CDS
CAGGGACAGAGAACTTATTA+TGG 0.320643 2_1:-78766823 Msa0227510:CDS
TGTGTTTATAACAGACAGTT+AGG 0.363036 2_1:-78763300 Msa0227510:intron
TTCAGCTTCAGAGAAGATTC+AGG 0.376123 2_1:-78763599 Msa0227510:CDS
GAAAGTAGCTGCCGAAGCTT+TGG 0.376729 2_1:-78766021 Msa0227510:CDS
AAGGAACCTGAAAGTGTATA+GGG 0.398359 2_1:+78767042 None:intergenic
ATTAGTATCCTCAGCCTCAT+TGG 0.399183 2_1:+78763138 None:intergenic
AGAAAACAATGAATTCTATC+TGG 0.400574 2_1:-78766732 Msa0227510:CDS
AACATCACCCTGCAATTGGC+TGG 0.405452 2_1:+78765971 None:intergenic
GAAGGAACCTGAAAGTGTAT+AGG 0.406860 2_1:+78767041 None:intergenic
GTGGGAGCCTTGGATGCTTT+AGG 0.414781 2_1:+78762992 None:intergenic
TTTCAACATCACCCTGCAAT+TGG 0.428767 2_1:+78765967 None:intergenic
TCCAAGGCTCCCACTTCATC+TGG 0.429819 2_1:-78762983 None:intergenic
GAACTAGCATTAGTCGAAAC+AGG 0.431899 2_1:+78766706 None:intergenic
CTTGGAATTCATTCATTGAT+CGG 0.439591 2_1:-78767206 Msa0227510:CDS
GTGAGGGAATGATAGGTTGC+AGG 0.443317 2_1:-78767182 Msa0227510:CDS
ACCAGATGAAGTGGGAGCCT+TGG 0.448923 2_1:+78762982 None:intergenic
GGATCAATTGTCAAAGGAAA+AGG 0.456421 2_1:-78763101 Msa0227510:CDS
GTAATAAAACTAACGGTGTT+CGG 0.465041 2_1:+78767297 None:intergenic
AAAGCATTCAATTTCTGTGC+AGG 0.476222 2_1:-78765910 Msa0227510:CDS
ATCTATTGAAATGCCTTCAA+TGG 0.478396 2_1:+78763630 None:intergenic
TATTACCTCATTGTTGGACG+TGG 0.479167 2_1:-78767280 Msa0227510:CDS
TGAAGTTACGAAAGTGTCCT+TGG 0.479472 2_1:-78767224 Msa0227510:CDS
AAAGATAGAAGAGGAGACGA+AGG 0.492432 2_1:-78764887 Msa0227510:CDS
GGAGATAGAGTTCAAGAAGT+GGG 0.492594 2_1:-78766083 Msa0227510:CDS
CGGGATGGATGGCCAATGGA+AGG 0.496429 2_1:+78763245 None:intergenic
GATCGGAGTGAGGGAATGAT+AGG 0.499388 2_1:-78767189 Msa0227510:CDS
GAAGTGGGTTGTAGCACATC+CGG 0.505932 2_1:-78766068 Msa0227510:CDS
ACACTTCGTATCCCTTCCAT+TGG 0.511276 2_1:-78763257 Msa0227510:CDS
CCAACAGTTGAGTCAAAAGA+TGG 0.518791 2_1:-78766104 Msa0227510:CDS
CTGAAAGTGTATAGGGTTGG+TGG 0.519485 2_1:+78767049 None:intergenic
CACTGACTCCAATGAGGCTG+AGG 0.538342 2_1:-78763146 Msa0227510:CDS
AGAAACTAACTCGGGATGGA+TGG 0.565961 2_1:+78763234 None:intergenic
TGTTCCCATACCAGATGAAG+TGG 0.569777 2_1:+78762973 None:intergenic
TTCATTCATTGATCGGAGTG+AGG 0.571872 2_1:-78767199 Msa0227510:CDS
GGGATGGATGGCCAATGGAA+GGG 0.572979 2_1:+78763246 None:intergenic
GATGTTGAAAACAAAGTGCT+AGG 0.573948 2_1:-78765954 Msa0227510:CDS
TCATTCATTGATCGGAGTGA+GGG 0.576475 2_1:-78767198 Msa0227510:CDS
CGATCAATGAATGAATTCCA+AGG 0.577601 2_1:+78767207 None:intergenic
AACTCGGGATGGATGGCCAA+TGG 0.581549 2_1:+78763241 None:intergenic
GTTTAGAAACTAACTCGGGA+TGG 0.583653 2_1:+78763230 None:intergenic
TTATGCACCTAAAGCATCCA+AGG 0.584598 2_1:-78762999 Msa0227510:CDS
AGAAGTGGATCAATTGTCAA+AGG 0.586169 2_1:-78763107 Msa0227510:CDS
ATTACCTCATTGTTGGACGT+GGG 0.586930 2_1:-78767279 Msa0227510:CDS
ACTAATGCTAGTTCTTGTGA+AGG 0.587218 2_1:-78766697 Msa0227510:intron
TGGAGATAGAGTTCAAGAAG+TGG 0.588662 2_1:-78766084 Msa0227510:CDS
GATTAGTTTAGAAACTAACT+CGG 0.588881 2_1:+78763225 None:intergenic
TAGGTTGCAGGTCTTTGTTG+AGG 0.589954 2_1:-78767170 Msa0227510:intron
ATTAGTTTAGAAACTAACTC+GGG 0.590655 2_1:+78763226 None:intergenic
AACCTGAAAGTGTATAGGGT+TGG 0.592225 2_1:+78767046 None:intergenic
TCATTGTTGGACGTGGGAGT+AGG 0.598329 2_1:-78767273 Msa0227510:CDS
TGGTGGTAAATCTGAGAAGT+CGG 0.602602 2_1:+78767066 None:intergenic
GATTCAGGCTATAGTTGATG+AGG 0.612141 2_1:-78763584 Msa0227510:intron
CAATGAGGTAATAAAACTAA+CGG 0.613554 2_1:+78767290 None:intergenic
ATGCTCATTAGAGATAGTGC+CGG 0.623255 2_1:+78766049 None:intergenic
GCTAGTTCCAGCCAATTGCA+GGG 0.644277 2_1:-78765978 Msa0227510:CDS
TACTCCCACGTCCAACAATG+AGG 0.647911 2_1:+78767275 None:intergenic
TTAGGTGCATAACTGACTAG+TGG 0.651177 2_1:+78763010 None:intergenic
TCTTGACACTGACTCCAATG+AGG 0.664648 2_1:-78763152 Msa0227510:CDS
GTTCCCATACCAGATGAAGT+GGG 0.681909 2_1:+78762974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAAAAATCATATGAA+AGG - chr2_1:78765105-78765124 Msa0227510:intron 10.0%
!! TATATAAAAATCATATGAAA+GGG - chr2_1:78765106-78765125 Msa0227510:intron 10.0%
!!! AAAATTAATTTAACATTTTG+GGG - chr2_1:78766326-78766345 Msa0227510:intron 10.0%
!!! CTGCTTAATTTTTTTTTTTT+TGG - chr2_1:78763446-78763465 Msa0227510:intron 15.0%
!! AATTGTGAAAATAAGTTAAA+AGG - chr2_1:78763954-78763973 Msa0227510:intron 15.0%
!!! TTTGGTATCTTTTATATTTT+TGG - chr2_1:78764106-78764125 Msa0227510:intron 15.0%
!!! GTTAAGATTTGTATTTTATT+TGG - chr2_1:78764533-78764552 Msa0227510:intron 15.0%
!!! TCATACTTAATAATTTTTCA+GGG - chr2_1:78765377-78765396 Msa0227510:intron 15.0%
!! AAAAAAAAACAAATTTCTTG+AGG + chr2_1:78766939-78766958 None:intergenic 15.0%
!!! ATTTATTTGAGTTTATCTAC+TGG + chr2_1:78763371-78763390 None:intergenic 20.0%
!!! TTTAAGCTGTGATTTTATAA+TGG - chr2_1:78763500-78763519 Msa0227510:intron 20.0%
!!! TTAAGCTGTGATTTTATAAT+GGG - chr2_1:78763501-78763520 Msa0227510:intron 20.0%
!!! TTATATTTTTGGCTATGTAA+AGG - chr2_1:78764117-78764136 Msa0227510:intron 20.0%
!! AAGAACAAATGAACAAATAT+TGG + chr2_1:78764487-78764506 None:intergenic 20.0%
!!! GATTTTTATATAATACCAGT+TGG + chr2_1:78765098-78765117 None:intergenic 20.0%
!!! CTCATACTTAATAATTTTTC+AGG - chr2_1:78765376-78765395 Msa0227510:intron 20.0%
!!! CATACTTAATAATTTTTCAG+GGG - chr2_1:78765378-78765397 Msa0227510:intron 20.0%
!!! ATATTTTTTTTTCCCTACTA+TGG - chr2_1:78765533-78765552 Msa0227510:intron 20.0%
!!! ATTATGTTATTGTCTTTTGA+TGG + chr2_1:78765653-78765672 None:intergenic 20.0%
!! TTTGAATAACACTATACATA+TGG + chr2_1:78765764-78765783 None:intergenic 20.0%
!! TAGAAAATTTGGTAGAAAAT+AGG - chr2_1:78766051-78766070 Msa0227510:CDS 20.0%
!!! TTTTTGAATAGTTTCTCTAA+TGG + chr2_1:78766186-78766205 None:intergenic 20.0%
!! AACTATTCAAAAAGATTTAG+AGG - chr2_1:78766193-78766212 Msa0227510:intron 20.0%
!!! AATTTTCAACACACTATTTT+GGG - chr2_1:78767098-78767117 Msa0227510:intron 20.0%
!! TACTAATGATAAAAAAGAAG+TGG - chr2_1:78767178-78767197 Msa0227510:CDS 20.0%
!!! GATTAACTTTAACTGATTTA+CGG + chr2_1:78767259-78767278 None:intergenic 20.0%
! CAATGAGGTAATAAAACTAA+CGG + chr2_1:78763013-78763032 None:intergenic 25.0%
!!! TAGTTTTATTACCTCATTGT+TGG - chr2_1:78763014-78763033 Msa0227510:CDS 25.0%
! AATCAAAATTGTTCGTAAAC+TGG + chr2_1:78763055-78763074 None:intergenic 25.0%
!! CAATTTGATTTCGTTGTTAT+CGG - chr2_1:78763175-78763194 Msa0227510:CDS 25.0%
! TAATGTGATAAAAAGCAAGA+AGG + chr2_1:78763280-78763299 None:intergenic 25.0%
! TATTTCTTTCCATAAGCTAA+GGG + chr2_1:78763346-78763365 None:intergenic 25.0%
! ATATTTCTTTCCATAAGCTA+AGG + chr2_1:78763347-78763366 None:intergenic 25.0%
!!! TTTTTTTTTGGTTTTGCAAC+AGG - chr2_1:78763458-78763477 Msa0227510:intron 25.0%
!!! TTTTTTTTGGTTTTGCAACA+GGG - chr2_1:78763459-78763478 Msa0227510:intron 25.0%
!! TTGTTTTCTGCTTATTGTTA+TGG + chr2_1:78763557-78763576 None:intergenic 25.0%
! AGAAAACAATGAATTCTATC+TGG - chr2_1:78763568-78763587 Msa0227510:intron 25.0%
!!! TGTATTTTTTGTCCAACTTA+TGG - chr2_1:78763628-78763647 Msa0227510:CDS 25.0%
!!! GTATTTTTTGTCCAACTTAT+GGG - chr2_1:78763629-78763648 Msa0227510:CDS 25.0%
!!! CTTATTTTCACAATTTTTCC+AGG + chr2_1:78763949-78763968 None:intergenic 25.0%
!!! CTTATTTTCATAAGTTTTCC+AGG + chr2_1:78763984-78764003 None:intergenic 25.0%
! AAAATTCTCATTCGATCTAA+GGG + chr2_1:78764089-78764108 None:intergenic 25.0%
!! TATATTTTCATCCAAAGCTT+CGG + chr2_1:78764293-78764312 None:intergenic 25.0%
! TCATTTGTTCTTTAATGTGT+TGG - chr2_1:78764495-78764514 Msa0227510:intron 25.0%
!! GTAACTTTCAATATTGATTG+AGG + chr2_1:78764606-78764625 None:intergenic 25.0%
! TTATTTCCACTGTAAATTGT+GGG + chr2_1:78764809-78764828 None:intergenic 25.0%
! TTTATTTCCACTGTAAATTG+TGG + chr2_1:78764810-78764829 None:intergenic 25.0%
!! TAAAAAAACCTATGTGCTTT+TGG - chr2_1:78764918-78764937 Msa0227510:intron 25.0%
!! TCTCTATTTCGTTTTATCAA+AGG - chr2_1:78765017-78765036 Msa0227510:intron 25.0%
!! TTTCGTTTTATCAAAGGAAA+AGG - chr2_1:78765023-78765042 Msa0227510:intron 25.0%
!! TTCGTTTTATCAAAGGAAAA+GGG - chr2_1:78765024-78765043 Msa0227510:intron 25.0%
! TAGTTATAGATAGACAGAAA+AGG - chr2_1:78765187-78765206 Msa0227510:intron 25.0%
! GAATATTTACTATTCCTGAT+AGG + chr2_1:78765226-78765245 None:intergenic 25.0%
! ATCAGGAATAGTAAATATTC+AGG - chr2_1:78765226-78765245 Msa0227510:intron 25.0%
! ATAACAATAGCAACAAGATT+TGG + chr2_1:78765293-78765312 None:intergenic 25.0%
!! TGAGTTTATCAGTAAGTTTT+TGG - chr2_1:78765467-78765486 Msa0227510:intron 25.0%
!! CATAAGATTGAGTCTTATAT+TGG - chr2_1:78765686-78765705 Msa0227510:intron 25.0%
!! TCTACCAAATTTTCTACTAT+AGG + chr2_1:78766047-78766066 None:intergenic 25.0%
! GTTCTATCAAAAACCATATT+TGG + chr2_1:78766233-78766252 None:intergenic 25.0%
!! CTTTAAGAGAAATACTTACT+TGG + chr2_1:78766404-78766423 None:intergenic 25.0%
! AAGTATTTCTCTTAAAGTAG+AGG - chr2_1:78766407-78766426 Msa0227510:intron 25.0%
! TATTTCTCATATCATCTAAG+AGG - chr2_1:78766629-78766648 Msa0227510:intron 25.0%
! AAACTATATGAGAAACAACT+AGG + chr2_1:78766899-78766918 None:intergenic 25.0%
! AAGAAATTAGTCACAAACTA+CGG - chr2_1:78766963-78766982 Msa0227510:intron 25.0%
!! ATTAGTTTAGAAACTAACTC+GGG + chr2_1:78767077-78767096 None:intergenic 25.0%
!!! GATTAGTTTAGAAACTAACT+CGG + chr2_1:78767078-78767097 None:intergenic 25.0%
!! CAATTTTCAACACACTATTT+TGG - chr2_1:78767097-78767116 Msa0227510:intron 25.0%
GTAATAAAACTAACGGTGTT+CGG + chr2_1:78763006-78763025 None:intergenic 30.0%
CTTGGAATTCATTCATTGAT+CGG - chr2_1:78763094-78763113 Msa0227510:CDS 30.0%
CGATAACAACGAAATCAAAT+TGG + chr2_1:78763177-78763196 None:intergenic 30.0%
ATTTCTTTCCATAAGCTAAG+GGG + chr2_1:78763345-78763364 None:intergenic 30.0%
ATTATACGACATGACTTTAG+TGG - chr2_1:78763716-78763735 Msa0227510:intron 30.0%
! CCATGTTTCAATATTTTCGA+AGG + chr2_1:78763746-78763765 None:intergenic 30.0%
CCTTCGAAAATATTGAAACA+TGG - chr2_1:78763743-78763762 Msa0227510:intron 30.0%
ATGTATAGTTCCATGTTCTT+AGG - chr2_1:78763770-78763789 Msa0227510:intron 30.0%
TGTATAGTTCCATGTTCTTA+GGG - chr2_1:78763771-78763790 Msa0227510:intron 30.0%
ATAGAAATAGCCTATAGAAG+CGG + chr2_1:78763863-78763882 None:intergenic 30.0%
AATAAGTTAAAAGGCTATCC+TGG - chr2_1:78763963-78763982 Msa0227510:intron 30.0%
CAAAATTCTCATTCGATCTA+AGG + chr2_1:78764090-78764109 None:intergenic 30.0%
! CTTAGATCGAATGAGAATTT+TGG - chr2_1:78764088-78764107 Msa0227510:intron 30.0%
! CACAGAAATTGAATGCTTTT+CGG + chr2_1:78764389-78764408 None:intergenic 30.0%
AAACCTGAACATAGAGATAA+GGG + chr2_1:78764560-78764579 None:intergenic 30.0%
TACATAGCAGTAGAATTGAT+TGG - chr2_1:78764626-78764645 Msa0227510:intron 30.0%
!! TTGATTGGTTTGTTGTCAAA+TGG - chr2_1:78764641-78764660 Msa0227510:intron 30.0%
TGACTTCATAGAAATTGGAT+CGG - chr2_1:78764666-78764685 Msa0227510:intron 30.0%
TATTTCCACTGTAAATTGTG+GGG + chr2_1:78764808-78764827 None:intergenic 30.0%
GAACTAGATTTGCAAAAATG+AGG + chr2_1:78764882-78764901 None:intergenic 30.0%
! AAAGAAAACCAAAAGCACAT+AGG + chr2_1:78764929-78764948 None:intergenic 30.0%
AACAATATTGCTTATCCAAC+TGG - chr2_1:78765080-78765099 Msa0227510:intron 30.0%
AAAAATCATATGAAAGGGAG+AGG - chr2_1:78765111-78765130 Msa0227510:intron 30.0%
AAAATCATATGAAAGGGAGA+GGG - chr2_1:78765112-78765131 Msa0227510:intron 30.0%
GAAAAATAGTATTGCCTATC+AGG - chr2_1:78765209-78765228 Msa0227510:intron 30.0%
TTCACATTGTCAACATCATA+TGG - chr2_1:78765256-78765275 Msa0227510:intron 30.0%
!! ACTCATCTTCTTTTGAAGAA+GGG + chr2_1:78765452-78765471 None:intergenic 30.0%
!! AACTCATCTTCTTTTGAAGA+AGG + chr2_1:78765453-78765472 None:intergenic 30.0%
! ATGTTATTGTCTTTTGATGG+AGG + chr2_1:78765650-78765669 None:intergenic 30.0%
AAGACTCAATCTTATGTTTC+TGG + chr2_1:78765682-78765701 None:intergenic 30.0%
AGCACCTATAGTAGAAAATT+TGG - chr2_1:78766040-78766059 Msa0227510:CDS 30.0%
TTGATCTACTCTTCTTACAA+CGG + chr2_1:78766117-78766136 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr2_1:78766118-78766137 Msa0227510:CDS 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG + chr2_1:78766176-78766195 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr2_1:78766237-78766256 Msa0227510:intron 30.0%
TAATTGTCAAGCTGTTAAGA+GGG + chr2_1:78766438-78766457 None:intergenic 30.0%
ATCTATTGAAATGCCTTCAA+TGG + chr2_1:78766673-78766692 None:intergenic 30.0%
TGGTTTATGATCGAACATTA+TGG + chr2_1:78766849-78766868 None:intergenic 30.0%
TAGAGGTTAATGAGTAGAAA+TGG + chr2_1:78766869-78766888 None:intergenic 30.0%
AACAACTAGGAAAGATTTAG+AGG + chr2_1:78766886-78766905 None:intergenic 30.0%
GTTTCTCATATAGTTTCTCT+AGG - chr2_1:78766903-78766922 Msa0227510:intron 30.0%
AAACAAATTTCTTGAGGTAG+AGG + chr2_1:78766933-78766952 None:intergenic 30.0%
TGTGTTTATAACAGACAGTT+AGG - chr2_1:78767000-78767019 Msa0227510:intron 30.0%
CGATCAATGAATGAATTCCA+AGG + chr2_1:78763096-78763115 None:intergenic 35.0%
! AAGGAACCTGAAAGTGTATA+GGG + chr2_1:78763261-78763280 None:intergenic 35.0%
!! AGCTGTGATTTTATAATGGG+TGG - chr2_1:78763504-78763523 Msa0227510:intron 35.0%
! ACTAATGCTAGTTCTTGTGA+AGG - chr2_1:78763603-78763622 Msa0227510:CDS 35.0%
ATCATGATAACCGCTTCTAT+AGG - chr2_1:78763850-78763869 Msa0227510:intron 35.0%
!! GTTGTTTTCATAAGCTATCC+TGG - chr2_1:78763928-78763947 Msa0227510:intron 35.0%
TCTGCAAAACACATCAATGT+AGG + chr2_1:78764160-78764179 None:intergenic 35.0%
! GATGTTGAAAACAAAGTGCT+AGG - chr2_1:78764346-78764365 Msa0227510:intron 35.0%
! AGAAATTGAATGCTTTTCGG+TGG + chr2_1:78764386-78764405 None:intergenic 35.0%
! AAAGCATTCAATTTCTGTGC+AGG - chr2_1:78764390-78764409 Msa0227510:intron 35.0%
! CAAATATTGGTTGACAGCTT+CGG + chr2_1:78764474-78764493 None:intergenic 35.0%
ACAAATCTTAACCAGTGTCA+CGG + chr2_1:78764525-78764544 None:intergenic 35.0%
GAAACCTGAACATAGAGATA+AGG + chr2_1:78764561-78764580 None:intergenic 35.0%
TGGCATGACTTCATAGAAAT+TGG - chr2_1:78764661-78764680 Msa0227510:intron 35.0%
ACTGTAAATTGTGGGGAAAA+TGG + chr2_1:78764801-78764820 None:intergenic 35.0%
! ATTTTCCCCACAATTTACAG+TGG - chr2_1:78764800-78764819 Msa0227510:intron 35.0%
!!! TGATATCACCTGTTGCTTTT+TGG - chr2_1:78764830-78764849 Msa0227510:intron 35.0%
AAAGCTTACCAAAAAGCAAC+AGG + chr2_1:78764841-78764860 None:intergenic 35.0%
CACACAGAAAAAGATAGAAG+AGG - chr2_1:78765404-78765423 Msa0227510:intron 35.0%
AGACCATATGTACAGTGTTT+AGG - chr2_1:78765784-78765803 Msa0227510:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG - chr2_1:78765840-78765859 Msa0227510:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG + chr2_1:78765849-78765868 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG - chr2_1:78765853-78765872 Msa0227510:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr2_1:78766060-78766079 Msa0227510:CDS 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr2_1:78766065-78766084 Msa0227510:CDS 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr2_1:78766121-78766140 Msa0227510:CDS 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr2_1:78766205-78766224 Msa0227510:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr2_1:78766217-78766236 Msa0227510:intron 35.0%
CTTAGGCACAAACATAATGA+AGG + chr2_1:78766359-78766378 None:intergenic 35.0%
TGACCAAATGTATAGTGCTT+AGG + chr2_1:78766376-78766395 None:intergenic 35.0%
AATTGTCAAGCTGTTAAGAG+GGG + chr2_1:78766437-78766456 None:intergenic 35.0%
CTAATTGTCAAGCTGTTAAG+AGG + chr2_1:78766439-78766458 None:intergenic 35.0%
CTCTTAACAGCTTGACAATT+AGG - chr2_1:78766437-78766456 Msa0227510:intron 35.0%
CATTATGACTCTAGTAAGAG+TGG - chr2_1:78766479-78766498 Msa0227510:intron 35.0%
TTATGATCGAACATTATGGC+TGG + chr2_1:78766845-78766864 None:intergenic 35.0%
AGAAGTGGATCAATTGTCAA+AGG - chr2_1:78767193-78767212 Msa0227510:CDS 35.0%
GGATCAATTGTCAAAGGAAA+AGG - chr2_1:78767199-78767218 Msa0227510:CDS 35.0%
TATTACCTCATTGTTGGACG+TGG - chr2_1:78763020-78763039 Msa0227510:CDS 40.0%
ATTACCTCATTGTTGGACGT+GGG - chr2_1:78763021-78763040 Msa0227510:CDS 40.0%
!! TGAAGTTACGAAAGTGTCCT+TGG - chr2_1:78763076-78763095 Msa0227510:CDS 40.0%
TTCATTCATTGATCGGAGTG+AGG - chr2_1:78763101-78763120 Msa0227510:CDS 40.0%
TCATTCATTGATCGGAGTGA+GGG - chr2_1:78763102-78763121 Msa0227510:CDS 40.0%
TGGTGGTAAATCTGAGAAGT+CGG + chr2_1:78763237-78763256 None:intergenic 40.0%
! AACCTGAAAGTGTATAGGGT+TGG + chr2_1:78763257-78763276 None:intergenic 40.0%
! GAAGGAACCTGAAAGTGTAT+AGG + chr2_1:78763262-78763281 None:intergenic 40.0%
AGCTAAGGGGTTATGGTATA+AGG + chr2_1:78763332-78763351 None:intergenic 40.0%
TACCATAACCCCTTAGCTTA+TGG - chr2_1:78763334-78763353 Msa0227510:intron 40.0%
TTCCATAAGCTAAGGGGTTA+TGG + chr2_1:78763339-78763358 None:intergenic 40.0%
CAGGGACAGAGAACTTATTA+TGG - chr2_1:78763477-78763496 Msa0227510:intron 40.0%
GAACTAGCATTAGTCGAAAC+AGG + chr2_1:78763597-78763616 None:intergenic 40.0%
TATTGACACTGCCCATAAGT+TGG + chr2_1:78763643-78763662 None:intergenic 40.0%
ATGCTCAAGCCAATCTAAAC+AGG - chr2_1:78764063-78764082 Msa0227510:intron 40.0%
ATCTAAGGGCCTGTTTAGAT+TGG + chr2_1:78764075-78764094 None:intergenic 40.0%
GCAAAACACATCAATGTAGG+AGG + chr2_1:78764157-78764176 None:intergenic 40.0%
!! CCATCTTTTGACTCAACTGT+TGG + chr2_1:78764199-78764218 None:intergenic 40.0%
CCAACAGTTGAGTCAAAAGA+TGG - chr2_1:78764196-78764215 Msa0227510:intron 40.0%
TGGAGATAGAGTTCAAGAAG+TGG - chr2_1:78764216-78764235 Msa0227510:intron 40.0%
GGAGATAGAGTTCAAGAAGT+GGG - chr2_1:78764217-78764236 Msa0227510:intron 40.0%
ATGCTCATTAGAGATAGTGC+CGG + chr2_1:78764254-78764273 None:intergenic 40.0%
TTTCAACATCACCCTGCAAT+TGG + chr2_1:78764336-78764355 None:intergenic 40.0%
TCTTGCATGATAACACTACG+CGG - chr2_1:78764705-78764724 Msa0227510:intron 40.0%
GCAAAAATGAGGCAGATAGA+TGG + chr2_1:78764871-78764890 None:intergenic 40.0%
!! TCATTCTGTGTTTGTTGTGC+AGG - chr2_1:78764986-78765005 Msa0227510:intron 40.0%
AAAGATAGAAGAGGAGACGA+AGG - chr2_1:78765413-78765432 Msa0227510:intron 40.0%
GTTGAAACAGAGCCATAGTA+GGG + chr2_1:78765548-78765567 None:intergenic 40.0%
AGTTGAAACAGAGCCATAGT+AGG + chr2_1:78765549-78765568 None:intergenic 40.0%
!! TCCATTGAGCTAGTCTTCTA+TGG - chr2_1:78765730-78765749 Msa0227510:intron 40.0%
! ACCATAGAAGACTAGCTCAA+TGG + chr2_1:78765734-78765753 None:intergenic 40.0%
GTGCCTAAACACTGTACATA+TGG + chr2_1:78765790-78765809 None:intergenic 40.0%
AGACTAGACAGGATAGGATT+AGG - chr2_1:78765988-78766007 Msa0227510:CDS 40.0%
TCTTCTTACAACGGCATCTA+CGG + chr2_1:78766108-78766127 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr2_1:78766146-78766165 Msa0227510:intron 40.0%
AAGCCTTTATCCCACTAAGT+GGG + chr2_1:78766287-78766306 None:intergenic 40.0%
GTGCCTAAGCACTATACATT+TGG - chr2_1:78766370-78766389 Msa0227510:intron 40.0%
GACTCTAGTAAGAGTGGATA+AGG - chr2_1:78766485-78766504 Msa0227510:intron 40.0%
! TTGTCTTTTGCAGCCATTGA+AGG - chr2_1:78766657-78766676 Msa0227510:intron 40.0%
TTCAGCTTCAGAGAAGATTC+AGG - chr2_1:78766701-78766720 Msa0227510:CDS 40.0%
! GATTCAGGCTATAGTTGATG+AGG - chr2_1:78766716-78766735 Msa0227510:CDS 40.0%
GTTTAGAAACTAACTCGGGA+TGG + chr2_1:78767073-78767092 None:intergenic 40.0%
ATTAGTATCCTCAGCCTCAT+TGG + chr2_1:78767165-78767184 None:intergenic 40.0%
TTAGGTGCATAACTGACTAG+TGG + chr2_1:78767293-78767312 None:intergenic 40.0%
! TTATGCACCTAAAGCATCCA+AGG - chr2_1:78767301-78767320 Msa0227510:CDS 40.0%
TAGGTTGCAGGTCTTTGTTG+AGG - chr2_1:78763130-78763149 Msa0227510:CDS 45.0%
! CTGAAAGTGTATAGGGTTGG+TGG + chr2_1:78763254-78763273 None:intergenic 45.0%
CACCAACCCTATACACTTTC+AGG - chr2_1:78763252-78763271 Msa0227510:CDS 45.0%
GGCTTGAGCATAAGCTGTTT+AGG + chr2_1:78764054-78764073 None:intergenic 45.0%
GGTCCCTTATCTCTATGTTC+AGG - chr2_1:78764554-78764573 Msa0227510:intron 45.0%
!! TCTGTGTTTGTTGTGCAGGT+TGG - chr2_1:78764990-78765009 Msa0227510:intron 45.0%
ACCGGCAATGTTGTATGGTA+CGG - chr2_1:78765887-78765906 Msa0227510:CDS 45.0%
TCCGTACCATACAACATTGC+CGG + chr2_1:78765891-78765910 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG - chr2_1:78765895-78765914 Msa0227510:CDS 45.0%
! GTTGTATGGTACGGAGTGTT+GGG - chr2_1:78765896-78765915 Msa0227510:CDS 45.0%
CGCTTACTTTACTCTCGTGT+TGG + chr2_1:78765932-78765951 None:intergenic 45.0%
CGAGAGTAAAGTAAGCGTAG+CGG - chr2_1:78765935-78765954 Msa0227510:CDS 45.0%
GATGAGTGGTAAGACTAGAC+AGG - chr2_1:78765977-78765996 Msa0227510:CDS 45.0%
GTGGTAAGACTAGACAGGAT+AGG - chr2_1:78765982-78766001 Msa0227510:CDS 45.0%
TGACACCATTAGAGAGAGAG+TGG - chr2_1:78766013-78766032 Msa0227510:CDS 45.0%
GACACCATTAGAGAGAGAGT+GGG - chr2_1:78766014-78766033 Msa0227510:CDS 45.0%
ACACCATTAGAGAGAGAGTG+GGG - chr2_1:78766015-78766034 Msa0227510:CDS 45.0%
CTTCTTACAACGGCATCTAC+GGG + chr2_1:78766107-78766126 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr2_1:78766130-78766149 Msa0227510:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr2_1:78766140-78766159 Msa0227510:intron 45.0%
TTTATCCCACTAAGTGGGGT+CGG + chr2_1:78766282-78766301 None:intergenic 45.0%
AGCCTTTATCCCACTAAGTG+GGG + chr2_1:78766286-78766305 None:intergenic 45.0%
CAAGCCTTTATCCCACTAAG+TGG + chr2_1:78766288-78766307 None:intergenic 45.0%
CACTTAGTGGGATAAAGGCT+TGG - chr2_1:78766286-78766305 Msa0227510:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr2_1:78766795-78766814 Msa0227510:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr2_1:78766796-78766815 Msa0227510:CDS 45.0%
ACACTTCGTATCCCTTCCAT+TGG - chr2_1:78767043-78767062 Msa0227510:intron 45.0%
AGAAACTAACTCGGGATGGA+TGG + chr2_1:78767069-78767088 None:intergenic 45.0%
!! TCTTGACACTGACTCCAATG+AGG - chr2_1:78767148-78767167 Msa0227510:intron 45.0%
!!! ATAAAATTAATTTAACATTT+TGG - chr2_1:78766324-78766343 Msa0227510:intron 5.0%
!!! TAAAATTAATTTAACATTTT+GGG - chr2_1:78766325-78766344 Msa0227510:intron 5.0%
TACTCCCACGTCCAACAATG+AGG + chr2_1:78763028-78763047 None:intergenic 50.0%
TCATTGTTGGACGTGGGAGT+AGG - chr2_1:78763027-78763046 Msa0227510:CDS 50.0%
GATCGGAGTGAGGGAATGAT+AGG - chr2_1:78763111-78763130 Msa0227510:CDS 50.0%
GTGAGGGAATGATAGGTTGC+AGG - chr2_1:78763118-78763137 Msa0227510:CDS 50.0%
CAGGTCTTTGTTGAGGTTCG+TGG - chr2_1:78763137-78763156 Msa0227510:CDS 50.0%
CCAAACACGCCCTAAGAACA+TGG + chr2_1:78763783-78763802 None:intergenic 50.0%
CCATGTTCTTAGGGCGTGTT+TGG - chr2_1:78763780-78763799 Msa0227510:intron 50.0%
!! GAAGTGGGTTGTAGCACATC+CGG - chr2_1:78764232-78764251 Msa0227510:intron 50.0%
GAAAGTAGCTGCCGAAGCTT+TGG - chr2_1:78764279-78764298 Msa0227510:intron 50.0%
TGCTAGTTCCAGCCAATTGC+AGG - chr2_1:78764321-78764340 Msa0227510:intron 50.0%
GCTAGTTCCAGCCAATTGCA+GGG - chr2_1:78764322-78764341 Msa0227510:intron 50.0%
AACATCACCCTGCAATTGGC+TGG + chr2_1:78764332-78764351 None:intergenic 50.0%
! AAGGGAGAGGGAGTATGACA+TGG - chr2_1:78765124-78765143 Msa0227510:intron 50.0%
! AGGGAGAGGGAGTATGACAT+GGG - chr2_1:78765125-78765144 Msa0227510:intron 50.0%
GACACGTACGAGATAGACAG+TGG + chr2_1:78765504-78765523 None:intergenic 50.0%
GTCAGACCGGCAATGTTGTA+TGG - chr2_1:78765882-78765901 Msa0227510:CDS 50.0%
! AAGTAAGCGTAGCGGAGATG+AGG - chr2_1:78765943-78765962 Msa0227510:CDS 50.0%
AGGATGTTGCGTTGGATGAG+TGG - chr2_1:78765963-78765982 Msa0227510:CDS 50.0%
CACCATTAGAGAGAGAGTGG+GGG - chr2_1:78766016-78766035 Msa0227510:CDS 50.0%
TACCCCCACTCTCTCTCTAA+TGG + chr2_1:78766021-78766040 None:intergenic 50.0%
GACCCCACTTAGTGGGATAA+AGG - chr2_1:78766281-78766300 Msa0227510:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr2_1:78766797-78766816 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr2_1:78766794-78766813 Msa0227510:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr2_1:78766800-78766819 Msa0227510:CDS 50.0%
! GTGTTGGTGAACCGTGACAC+TGG - chr2_1:78764511-78764530 Msa0227510:intron 55.0%
CTATCGGACAGCAGTCAGAC+CGG - chr2_1:78765869-78765888 Msa0227510:CDS 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG - chr2_1:78765899-78765918 Msa0227510:CDS 55.0%
CGGAGATGAGGATGTTGCGT+TGG - chr2_1:78765955-78765974 Msa0227510:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr2_1:78766808-78766827 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr2_1:78766273-78766292 Msa0227510:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr2_1:78766274-78766293 Msa0227510:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr2_1:78766280-78766299 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr2_1:78766274-78766293 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr2_1:78766273-78766292 None:intergenic 55.0%
GGGATGGATGGCCAATGGAA+GGG + chr2_1:78767057-78767076 None:intergenic 55.0%
AACTCGGGATGGATGGCCAA+TGG + chr2_1:78767062-78767081 None:intergenic 55.0%
!! CACTGACTCCAATGAGGCTG+AGG - chr2_1:78767154-78767173 Msa0227510:intron 55.0%
GTGGGAGCCTTGGATGCTTT+AGG + chr2_1:78767311-78767330 None:intergenic 55.0%
CGGGATGGATGGCCAATGGA+AGG + chr2_1:78767058-78767077 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 78762985 78767337 78762985 ID=Msa0227510;Name=Msa0227510
chr2_1 mRNA 78762985 78767337 78762985 ID=Msa0227510-mRNA-1;Parent=Msa0227510;Name=Msa0227510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.85|0.62|1|0.85|0.75|8|0|381
chr2_1 exon 78767171 78767337 78767171 ID=Msa0227510-mRNA-1:exon:23936;Parent=Msa0227510-mRNA-1
chr2_1 exon 78767049 78767094 78767049 ID=Msa0227510-mRNA-1:exon:23935;Parent=Msa0227510-mRNA-1
chr2_1 exon 78766698 78766842 78766698 ID=Msa0227510-mRNA-1:exon:23934;Parent=Msa0227510-mRNA-1
chr2_1 exon 78765869 78766143 78765869 ID=Msa0227510-mRNA-1:exon:23933;Parent=Msa0227510-mRNA-1
chr2_1 exon 78765277 78765314 78765277 ID=Msa0227510-mRNA-1:exon:23932;Parent=Msa0227510-mRNA-1
chr2_1 exon 78764845 78764924 78764845 ID=Msa0227510-mRNA-1:exon:23931;Parent=Msa0227510-mRNA-1
chr2_1 exon 78763585 78763652 78763585 ID=Msa0227510-mRNA-1:exon:23930;Parent=Msa0227510-mRNA-1
chr2_1 exon 78762985 78763308 78762985 ID=Msa0227510-mRNA-1:exon:23929;Parent=Msa0227510-mRNA-1
chr2_1 CDS 78767171 78767337 78767171 ID=Msa0227510-mRNA-1:cds;Parent=Msa0227510-mRNA-1
chr2_1 CDS 78767049 78767094 78767049 ID=Msa0227510-mRNA-1:cds;Parent=Msa0227510-mRNA-1
chr2_1 CDS 78766698 78766842 78766698 ID=Msa0227510-mRNA-1:cds;Parent=Msa0227510-mRNA-1
chr2_1 CDS 78765869 78766143 78765869 ID=Msa0227510-mRNA-1:cds;Parent=Msa0227510-mRNA-1
chr2_1 CDS 78765277 78765314 78765277 ID=Msa0227510-mRNA-1:cds;Parent=Msa0227510-mRNA-1
chr2_1 CDS 78764845 78764924 78764845 ID=Msa0227510-mRNA-1:cds;Parent=Msa0227510-mRNA-1
chr2_1 CDS 78763585 78763652 78763585 ID=Msa0227510-mRNA-1:cds;Parent=Msa0227510-mRNA-1
chr2_1 CDS 78762985 78763308 78762985 ID=Msa0227510-mRNA-1:cds;Parent=Msa0227510-mRNA-1
Gene Sequence

>Msa0227510

TTGGATGACATCTCAAAACCGAACACCGTTAGTTTTATTACCTCATTGTTGGACGTGGGAGTAGGAACCAGTTTACGAACAATTTTGATTTTGAAGTTACGAAAGTGTCCTTGGAATTCATTCATTGATCGGAGTGAGGGAATGATAGGTTGCAGGTCTTTGTTGAGAGTCGACCGACTTCTCAGATTTACCACCAACCCTATACACTTTCAGGGACAGAGAACTTATTATGGTTTAAGCTGTGATTTTATAATGGGTGGTAGAAAAAAGAGAGTTGTTATTGATGACCATAACAATAAGCAGAAAACAATGAATTCTATCTGGAGACCTGTTTCGACTAATGCTAGTTCTTGTGAAGAAAGCTTGATAACTGCTCCAACAGTTGAGTCAAAAGATGGAGATAGAGTTCAAGAAGTGGGTTGTAGCACATCCGGCACTATCTCTAATGAGCATGACATGAAAGTAGCTGCCGAAGCTTTGGATGAAAATATAAAATCAGCTGCTAGTTCCAGCCAATTGCAGGGTGATGTTGAAAACAAAGTGCTAGGAGATTCATCTCTCTCCACCGAAAAGCATTCAATTTCTGTGCAGGCAATTATATATTATTTTTACTTTTATTTTTATCTTTACGAAGTTGGTGCTTCTCTATTTCGTTTTATCAAAGGAAAAGGGGGATTCACACAGAAAAAGATAGAAGAGGAGACGAAGGTTAAGATAATATTCCCTTCTTCAAAAGAAGATGAGTTTATCACCATTGAAGGCATTTCAATAGATAGCGTGACTTCAGCTTCAGAGAAGATTCAGGCTATAGTTGATGAGACAGTTAGGAGTCGAAGTCTTGATTATTCACACTTCGTATCCCTTCCATTGGCCATCCATCCCGAGTTAGTTTCTAAACTAATCAATTTTCAACACACTATTTTGGGAAATGACGATTCTAGCATAGATGAGAATCTTGACACTGACTCCAATGAGGCTGAGGATACTAATGATAAAAAAGAAGTGGATCAATTGTCAAAGGAAAAGGCTGATGTTGCAGTTGAACTTAAAGTTGATGATGACCGTAAATCAGTTAAAGTTAATCGTACTAGCATACCACTAGTCAGTTATGCACCTAAAGCATCCAAGGCTCCCACTTCATCT

Protein sequence

>Msa0227510

LDDISKPNTVSFITSLLDVGVGTSLRTILILKLRKCPWNSFIDRSEGMIGCRSLLRVDRLLRFTTNPIHFQGQRTYYGLSCDFIMGGRKKRVVIDDHNNKQKTMNSIWRPVSTNASSCEESLITAPTVESKDGDRVQEVGCSTSGTISNEHDMKVAAEALDENIKSAASSSQLQGDVENKVLGDSSLSTEKHSISVQAIIYYFYFYFYLYEVGASLFRFIKGKGGFTQKKIEEETKVKIIFPSSKEDEFITIEGISIDSVTSASEKIQAIVDETVRSRSLDYSHFVSLPLAIHPELVSKLINFQHTILGNDDSSIDENLDTDSNEAEDTNDKKEVDQLSKEKADVAVELKVDDDRKSVKVNRTSIPLVSYAPKASKAPTSS