AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1266840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1266840 MtrunA17_Chr4g0069521 98.701 77 1 0 1 77 1 77 7.34e-53 158
Msa1266840 MtrunA17_Chr2g0302061 77.922 77 13 3 1 76 1 74 3.16e-36 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1266840 AT1G48330.1 65.152 66 20 3 1 63 1 66 1.32e-23 85.1
Msa1266840 AT3G17580.1 60.274 73 17 4 1 63 1 71 3.42e-21 79.3

Find 55 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAGAAGCCATTTGGTTT+TGG 0.252906 8_2:-71929066 None:intergenic
GTGCTTATGTCCAGTCCTTT+AGG 0.254502 8_2:+71928812 Msa1266840:five_prime_UTR
GATAAGAGAAGTCAATAAAA+AGG 0.255616 8_2:+71928847 Msa1266840:five_prime_UTR
ACACTCTGTGGCTGTGGATT+TGG 0.258834 8_2:-71929542 None:intergenic
TGCATCAAATATCTTGAATA+TGG 0.276681 8_2:+71929670 Msa1266840:three_prime_UTR
AAACCTGTTTGAGACTTCTT+AGG 0.295118 8_2:-71929157 None:intergenic
ACCAAAACCAAATGGCTTCT+TGG 0.316100 8_2:+71929065 Msa1266840:exon
TCTTTGATGAAGAAGAATTA+AGG 0.328607 8_2:+71929748 Msa1266840:three_prime_UTR
GTCAAAATGTTAGTACTTGT+TGG 0.336762 8_2:+71929800 Msa1266840:three_prime_UTR
TTCTTAGGATCCCTTGTTGT+TGG 0.351825 8_2:-71929142 None:intergenic
TTATATAATATATATTATAT+AGG 0.357294 8_2:-71928965 None:intergenic
TTATATGCTAATTAATGTTA+AGG 0.373939 8_2:+71929637 Msa1266840:three_prime_UTR
AGAACAAGAGAGGCGTATAA+TGG 0.401789 8_2:+71929450 Msa1266840:intron
TCAAAATGTTAGTACTTGTT+GGG 0.424308 8_2:+71929801 Msa1266840:three_prime_UTR
TACATTCATTTGCAAAGATA+AGG 0.427064 8_2:+71929001 Msa1266840:five_prime_UTR
ACATTCGCTAATTTATGCAC+TGG 0.461046 8_2:-71929610 None:intergenic
TGCAAATGAATGTATTCTCT+AGG 0.462994 8_2:-71928992 None:intergenic
TTATGCACTGGGACTTCAAA+GGG 0.464235 8_2:-71929598 None:intergenic
CATTCGCTAATTTATGCACT+GGG 0.478527 8_2:-71929609 None:intergenic
GCAAATGAATGTATTCTCTA+GGG 0.489660 8_2:-71928991 None:intergenic
TATGTTACACTCTGTGGCTG+TGG 0.492905 8_2:-71929548 None:intergenic
GATCCTAAGAAGTCTCAAAC+AGG 0.499805 8_2:+71929154 Msa1266840:CDS
ATGGTATGAATGTAATGTAA+TGG 0.502131 8_2:+71929689 Msa1266840:three_prime_UTR
TCAAGTTATGTGGTCAATGC+TGG 0.502431 8_2:+71929513 Msa1266840:CDS
ATCTCTCTCATCAAACCTAA+AGG 0.510453 8_2:-71928827 None:intergenic
GTCAATCAACCAAAACCAAA+TGG 0.522048 8_2:+71929057 Msa1266840:exon
TGATATTCTTTCACCAATCA+CGG 0.527224 8_2:-71929829 None:intergenic
TTGTTGGGAATCCCCGTGAT+TGG 0.536042 8_2:+71929816 Msa1266840:three_prime_UTR
GATATTCTTTCACCAATCAC+GGG 0.538061 8_2:-71929828 None:intergenic
ATGAAGATGTTCAAGTTATG+TGG 0.553111 8_2:+71929503 Msa1266840:CDS
TCTCATCAAACCTAAAGGAC+TGG 0.554967 8_2:-71928822 None:intergenic
GGATCTGCAAGGTGAAGTAA+TGG 0.564236 8_2:+71929471 Msa1266840:CDS
GATGAGGTTAAGATTGTGGA+AGG 0.564443 8_2:-71928879 None:intergenic
GTGAGATGAGGTTAAGATTG+TGG 0.565747 8_2:-71928883 None:intergenic
TTTATGCACTGGGACTTCAA+AGG 0.569375 8_2:-71929599 None:intergenic
TTATGTGGTCAATGCTGGAT+AGG 0.570689 8_2:+71929518 Msa1266840:CDS
ACACAGAGAGAAGGAAAGAG+AGG 0.582028 8_2:-71928916 None:intergenic
TACTTATTGAACCGTCAAAG+AGG 0.594531 8_2:-71929895 None:intergenic
CAAACACAAACACAGAGAGA+AGG 0.597186 8_2:-71928925 None:intergenic
ATGAAGAAGAATTAAGGTGG+CGG 0.597770 8_2:+71929754 Msa1266840:three_prime_UTR
GGAGCAAGATCCGTGAGATG+AGG 0.611544 8_2:-71928895 None:intergenic
TTGATGAAGAAGAATTAAGG+TGG 0.614747 8_2:+71929751 Msa1266840:three_prime_UTR
TATTGTTTACAGAACAAGAG+AGG 0.616356 8_2:+71929440 Msa1266840:intron
GTATAGAGAAGCATATTCAA+AGG 0.628569 8_2:+71929023 Msa1266840:five_prime_UTR
TTAAAGAACAACCAACAACA+AGG 0.633465 8_2:+71929131 Msa1266840:CDS
TGAAGTTATGTTACACTCTG+TGG 0.635521 8_2:-71929554 None:intergenic
ACAATCTTAACCTCATCTCA+CGG 0.636961 8_2:+71928885 Msa1266840:five_prime_UTR
CAAGGTGAAGTAATGGCATG+TGG 0.637142 8_2:+71929478 Msa1266840:CDS
ATGTAAAAGAACCAAACACA+AGG 0.662731 8_2:-71929932 None:intergenic
TAAAGAACAACCAACAACAA+GGG 0.675428 8_2:+71929132 Msa1266840:CDS
AGGCGTATAATGGATCTGCA+AGG 0.696517 8_2:+71929460 Msa1266840:CDS
ATATTCTTTCACCAATCACG+GGG 0.713644 8_2:-71929827 None:intergenic
TGATTGGTGAAAGAATATCA+TGG 0.714774 8_2:+71929832 Msa1266840:three_prime_UTR
TGTAAAAGAACCAAACACAA+GGG 0.715508 8_2:-71929931 None:intergenic
AAGGTGAAGTAATGGCATGT+GGG 0.724189 8_2:+71929479 Msa1266840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAATATATATTATAT+AGG - chr8_2:71928968-71928987 None:intergenic 0.0%
!! TTATATAATATATATTATAT+AGG - chr8_2:71928968-71928987 None:intergenic 0.0%
!!! AAGTACAATTTTAAATTATA+AGG - chr8_2:71929335-71929354 None:intergenic 10.0%
!!! GTACTTTTATTTATTTTTTA+CGG + chr8_2:71929349-71929368 Msa1266840:intron 10.0%
!!! AAGTACAATTTTAAATTATA+AGG - chr8_2:71929335-71929354 None:intergenic 10.0%
!!! GTACTTTTATTTATTTTTTA+CGG + chr8_2:71929349-71929368 Msa1266840:intron 10.0%
!!! TTATTCAAATAGTATTTTGT+CGG + chr8_2:71929289-71929308 Msa1266840:intron 15.0%
!! AAAAAATGAGTTAAATAATG+TGG - chr8_2:71929420-71929439 None:intergenic 15.0%
!! TTATATGCTAATTAATGTTA+AGG + chr8_2:71929637-71929656 Msa1266840:three_prime_UTR 15.0%
!!! TTATTCAAATAGTATTTTGT+CGG + chr8_2:71929289-71929308 Msa1266840:intron 15.0%
!! AAAAAATGAGTTAAATAATG+TGG - chr8_2:71929420-71929439 None:intergenic 15.0%
!! TTATATGCTAATTAATGTTA+AGG + chr8_2:71929637-71929656 Msa1266840:three_prime_UTR 15.0%
!!! AAATGAAGATTTAAGATTGT+GGG - chr8_2:71929194-71929213 None:intergenic 20.0%
!!! ATTGAAAGTACAATTTCTTT+TGG - chr8_2:71929396-71929415 None:intergenic 20.0%
!! TCTTCATCAAAGAAAAAAAA+GGG - chr8_2:71929741-71929760 None:intergenic 20.0%
!! TTCTTCATCAAAGAAAAAAA+AGG - chr8_2:71929742-71929761 None:intergenic 20.0%
!!! AAATGAAGATTTAAGATTGT+GGG - chr8_2:71929194-71929213 None:intergenic 20.0%
!!! ATTGAAAGTACAATTTCTTT+TGG - chr8_2:71929396-71929415 None:intergenic 20.0%
!! TCTTCATCAAAGAAAAAAAA+GGG - chr8_2:71929741-71929760 None:intergenic 20.0%
!! TTCTTCATCAAAGAAAAAAA+AGG - chr8_2:71929742-71929761 None:intergenic 20.0%
! GATAAGAGAAGTCAATAAAA+AGG + chr8_2:71928847-71928866 Msa1266840:five_prime_UTR 25.0%
! TACATTCATTTGCAAAGATA+AGG + chr8_2:71929001-71929020 Msa1266840:five_prime_UTR 25.0%
!!! AAAGTACAAGCTTTTTTGAA+TGG - chr8_2:71929109-71929128 None:intergenic 25.0%
!! GAAATGAAGATTTAAGATTG+TGG - chr8_2:71929195-71929214 None:intergenic 25.0%
! TGCATCAAATATCTTGAATA+TGG + chr8_2:71929670-71929689 Msa1266840:three_prime_UTR 25.0%
! ATGGTATGAATGTAATGTAA+TGG + chr8_2:71929689-71929708 Msa1266840:three_prime_UTR 25.0%
! CTTCATCAAAGAAAAAAAAG+GGG - chr8_2:71929740-71929759 None:intergenic 25.0%
! TCTTTGATGAAGAAGAATTA+AGG + chr8_2:71929748-71929767 Msa1266840:three_prime_UTR 25.0%
! TCAAAATGTTAGTACTTGTT+GGG + chr8_2:71929801-71929820 Msa1266840:three_prime_UTR 25.0%
!!! GGTGAGATTTTTTTAATGAA+AGG + chr8_2:71929853-71929872 Msa1266840:three_prime_UTR 25.0%
! GATAAGAGAAGTCAATAAAA+AGG + chr8_2:71928847-71928866 Msa1266840:five_prime_UTR 25.0%
! TACATTCATTTGCAAAGATA+AGG + chr8_2:71929001-71929020 Msa1266840:five_prime_UTR 25.0%
!!! AAAGTACAAGCTTTTTTGAA+TGG - chr8_2:71929109-71929128 None:intergenic 25.0%
!! GAAATGAAGATTTAAGATTG+TGG - chr8_2:71929195-71929214 None:intergenic 25.0%
! TGCATCAAATATCTTGAATA+TGG + chr8_2:71929670-71929689 Msa1266840:three_prime_UTR 25.0%
! ATGGTATGAATGTAATGTAA+TGG + chr8_2:71929689-71929708 Msa1266840:three_prime_UTR 25.0%
! CTTCATCAAAGAAAAAAAAG+GGG - chr8_2:71929740-71929759 None:intergenic 25.0%
! TCTTTGATGAAGAAGAATTA+AGG + chr8_2:71929748-71929767 Msa1266840:three_prime_UTR 25.0%
! TCAAAATGTTAGTACTTGTT+GGG + chr8_2:71929801-71929820 Msa1266840:three_prime_UTR 25.0%
!!! GGTGAGATTTTTTTAATGAA+AGG + chr8_2:71929853-71929872 Msa1266840:three_prime_UTR 25.0%
GCAAATGAATGTATTCTCTA+GGG - chr8_2:71928994-71929013 None:intergenic 30.0%
TGCAAATGAATGTATTCTCT+AGG - chr8_2:71928995-71929014 None:intergenic 30.0%
! GTATAGAGAAGCATATTCAA+AGG + chr8_2:71929023-71929042 Msa1266840:five_prime_UTR 30.0%
TTAAAGAACAACCAACAACA+AGG + chr8_2:71929131-71929150 Msa1266840:CDS 30.0%
TAAAGAACAACCAACAACAA+GGG + chr8_2:71929132-71929151 Msa1266840:CDS 30.0%
TATTGTTTACAGAACAAGAG+AGG + chr8_2:71929440-71929459 Msa1266840:intron 30.0%
! ATGAAGATGTTCAAGTTATG+TGG + chr8_2:71929503-71929522 Msa1266840:CDS 30.0%
TTGATGAAGAAGAATTAAGG+TGG + chr8_2:71929751-71929770 Msa1266840:three_prime_UTR 30.0%
GTCAAAATGTTAGTACTTGT+TGG + chr8_2:71929800-71929819 Msa1266840:three_prime_UTR 30.0%
TGATATTCTTTCACCAATCA+CGG - chr8_2:71929832-71929851 None:intergenic 30.0%
TGATTGGTGAAAGAATATCA+TGG + chr8_2:71929832-71929851 Msa1266840:three_prime_UTR 30.0%
! TACAATTTTACCCTTGTGTT+TGG + chr8_2:71929921-71929940 Msa1266840:three_prime_UTR 30.0%
TGTAAAAGAACCAAACACAA+GGG - chr8_2:71929934-71929953 None:intergenic 30.0%
GCAAATGAATGTATTCTCTA+GGG - chr8_2:71928994-71929013 None:intergenic 30.0%
TGCAAATGAATGTATTCTCT+AGG - chr8_2:71928995-71929014 None:intergenic 30.0%
! GTATAGAGAAGCATATTCAA+AGG + chr8_2:71929023-71929042 Msa1266840:five_prime_UTR 30.0%
TTAAAGAACAACCAACAACA+AGG + chr8_2:71929131-71929150 Msa1266840:CDS 30.0%
TAAAGAACAACCAACAACAA+GGG + chr8_2:71929132-71929151 Msa1266840:CDS 30.0%
TATTGTTTACAGAACAAGAG+AGG + chr8_2:71929440-71929459 Msa1266840:intron 30.0%
! ATGAAGATGTTCAAGTTATG+TGG + chr8_2:71929503-71929522 Msa1266840:CDS 30.0%
TTGATGAAGAAGAATTAAGG+TGG + chr8_2:71929751-71929770 Msa1266840:three_prime_UTR 30.0%
GTCAAAATGTTAGTACTTGT+TGG + chr8_2:71929800-71929819 Msa1266840:three_prime_UTR 30.0%
TGATATTCTTTCACCAATCA+CGG - chr8_2:71929832-71929851 None:intergenic 30.0%
TGATTGGTGAAAGAATATCA+TGG + chr8_2:71929832-71929851 Msa1266840:three_prime_UTR 30.0%
! TACAATTTTACCCTTGTGTT+TGG + chr8_2:71929921-71929940 Msa1266840:three_prime_UTR 30.0%
TGTAAAAGAACCAAACACAA+GGG - chr8_2:71929934-71929953 None:intergenic 30.0%
ATCTCTCTCATCAAACCTAA+AGG - chr8_2:71928830-71928849 None:intergenic 35.0%
ACAATCTTAACCTCATCTCA+CGG + chr8_2:71928885-71928904 Msa1266840:five_prime_UTR 35.0%
GTCAATCAACCAAAACCAAA+TGG + chr8_2:71929057-71929076 Msa1266840:exon 35.0%
! TTTTCTTCCAAGAAGCCATT+TGG - chr8_2:71929075-71929094 None:intergenic 35.0%
!!! TTTTTTGAATGGTGTTGCGA+TGG - chr8_2:71929098-71929117 None:intergenic 35.0%
! AAACCTGTTTGAGACTTCTT+AGG - chr8_2:71929160-71929179 None:intergenic 35.0%
TGAAGTTATGTTACACTCTG+TGG - chr8_2:71929557-71929576 None:intergenic 35.0%
CATTCGCTAATTTATGCACT+GGG - chr8_2:71929612-71929631 None:intergenic 35.0%
ACATTCGCTAATTTATGCAC+TGG - chr8_2:71929613-71929632 None:intergenic 35.0%
ATGAAGAAGAATTAAGGTGG+CGG + chr8_2:71929754-71929773 Msa1266840:three_prime_UTR 35.0%
ATATTCTTTCACCAATCACG+GGG - chr8_2:71929830-71929849 None:intergenic 35.0%
GATATTCTTTCACCAATCAC+GGG - chr8_2:71929831-71929850 None:intergenic 35.0%
TACTTATTGAACCGTCAAAG+AGG - chr8_2:71929898-71929917 None:intergenic 35.0%
ATCTCTCTCATCAAACCTAA+AGG - chr8_2:71928830-71928849 None:intergenic 35.0%
ACAATCTTAACCTCATCTCA+CGG + chr8_2:71928885-71928904 Msa1266840:five_prime_UTR 35.0%
GTCAATCAACCAAAACCAAA+TGG + chr8_2:71929057-71929076 Msa1266840:exon 35.0%
! TTTTCTTCCAAGAAGCCATT+TGG - chr8_2:71929075-71929094 None:intergenic 35.0%
!!! TTTTTTGAATGGTGTTGCGA+TGG - chr8_2:71929098-71929117 None:intergenic 35.0%
! AAACCTGTTTGAGACTTCTT+AGG - chr8_2:71929160-71929179 None:intergenic 35.0%
TGAAGTTATGTTACACTCTG+TGG - chr8_2:71929557-71929576 None:intergenic 35.0%
CATTCGCTAATTTATGCACT+GGG - chr8_2:71929612-71929631 None:intergenic 35.0%
ACATTCGCTAATTTATGCAC+TGG - chr8_2:71929613-71929632 None:intergenic 35.0%
ATGAAGAAGAATTAAGGTGG+CGG + chr8_2:71929754-71929773 Msa1266840:three_prime_UTR 35.0%
ATATTCTTTCACCAATCACG+GGG - chr8_2:71929830-71929849 None:intergenic 35.0%
GATATTCTTTCACCAATCAC+GGG - chr8_2:71929831-71929850 None:intergenic 35.0%
TACTTATTGAACCGTCAAAG+AGG - chr8_2:71929898-71929917 None:intergenic 35.0%
TCTCATCAAACCTAAAGGAC+TGG - chr8_2:71928825-71928844 None:intergenic 40.0%
GATGAGGTTAAGATTGTGGA+AGG - chr8_2:71928882-71928901 None:intergenic 40.0%
GTGAGATGAGGTTAAGATTG+TGG - chr8_2:71928886-71928905 None:intergenic 40.0%
CAAACACAAACACAGAGAGA+AGG - chr8_2:71928928-71928947 None:intergenic 40.0%
ACCAAAACCAAATGGCTTCT+TGG + chr8_2:71929065-71929084 Msa1266840:exon 40.0%
!! TCCAAGAAGCCATTTGGTTT+TGG - chr8_2:71929069-71929088 None:intergenic 40.0%
! TTCTTAGGATCCCTTGTTGT+TGG - chr8_2:71929145-71929164 None:intergenic 40.0%
GATCCTAAGAAGTCTCAAAC+AGG + chr8_2:71929154-71929173 Msa1266840:CDS 40.0%
! AGAACAAGAGAGGCGTATAA+TGG + chr8_2:71929450-71929469 Msa1266840:intron 40.0%
AAGGTGAAGTAATGGCATGT+GGG + chr8_2:71929479-71929498 Msa1266840:CDS 40.0%
TCAAGTTATGTGGTCAATGC+TGG + chr8_2:71929513-71929532 Msa1266840:CDS 40.0%
TTATGTGGTCAATGCTGGAT+AGG + chr8_2:71929518-71929537 Msa1266840:CDS 40.0%
TTATGCACTGGGACTTCAAA+GGG - chr8_2:71929601-71929620 None:intergenic 40.0%
TTTATGCACTGGGACTTCAA+AGG - chr8_2:71929602-71929621 None:intergenic 40.0%
!!! TTAAGGTGGCGGTTTTAGTT+TGG + chr8_2:71929765-71929784 Msa1266840:three_prime_UTR 40.0%
! GTGTCTGTTTTCCTCTTTGA+CGG + chr8_2:71929884-71929903 Msa1266840:three_prime_UTR 40.0%
TCTCATCAAACCTAAAGGAC+TGG - chr8_2:71928825-71928844 None:intergenic 40.0%
GATGAGGTTAAGATTGTGGA+AGG - chr8_2:71928882-71928901 None:intergenic 40.0%
GTGAGATGAGGTTAAGATTG+TGG - chr8_2:71928886-71928905 None:intergenic 40.0%
CAAACACAAACACAGAGAGA+AGG - chr8_2:71928928-71928947 None:intergenic 40.0%
ACCAAAACCAAATGGCTTCT+TGG + chr8_2:71929065-71929084 Msa1266840:exon 40.0%
!! TCCAAGAAGCCATTTGGTTT+TGG - chr8_2:71929069-71929088 None:intergenic 40.0%
! TTCTTAGGATCCCTTGTTGT+TGG - chr8_2:71929145-71929164 None:intergenic 40.0%
GATCCTAAGAAGTCTCAAAC+AGG + chr8_2:71929154-71929173 Msa1266840:CDS 40.0%
! AGAACAAGAGAGGCGTATAA+TGG + chr8_2:71929450-71929469 Msa1266840:intron 40.0%
AAGGTGAAGTAATGGCATGT+GGG + chr8_2:71929479-71929498 Msa1266840:CDS 40.0%
TCAAGTTATGTGGTCAATGC+TGG + chr8_2:71929513-71929532 Msa1266840:CDS 40.0%
TTATGTGGTCAATGCTGGAT+AGG + chr8_2:71929518-71929537 Msa1266840:CDS 40.0%
TTATGCACTGGGACTTCAAA+GGG - chr8_2:71929601-71929620 None:intergenic 40.0%
TTTATGCACTGGGACTTCAA+AGG - chr8_2:71929602-71929621 None:intergenic 40.0%
!!! TTAAGGTGGCGGTTTTAGTT+TGG + chr8_2:71929765-71929784 Msa1266840:three_prime_UTR 40.0%
! GTGTCTGTTTTCCTCTTTGA+CGG + chr8_2:71929884-71929903 Msa1266840:three_prime_UTR 40.0%
GTGCTTATGTCCAGTCCTTT+AGG + chr8_2:71928812-71928831 Msa1266840:five_prime_UTR 45.0%
ACACAGAGAGAAGGAAAGAG+AGG - chr8_2:71928919-71928938 None:intergenic 45.0%
!! AGGCGTATAATGGATCTGCA+AGG + chr8_2:71929460-71929479 Msa1266840:CDS 45.0%
GGATCTGCAAGGTGAAGTAA+TGG + chr8_2:71929471-71929490 Msa1266840:CDS 45.0%
CAAGGTGAAGTAATGGCATG+TGG + chr8_2:71929478-71929497 Msa1266840:CDS 45.0%
TATGTTACACTCTGTGGCTG+TGG - chr8_2:71929551-71929570 None:intergenic 45.0%
GTGCTTATGTCCAGTCCTTT+AGG + chr8_2:71928812-71928831 Msa1266840:five_prime_UTR 45.0%
ACACAGAGAGAAGGAAAGAG+AGG - chr8_2:71928919-71928938 None:intergenic 45.0%
!! AGGCGTATAATGGATCTGCA+AGG + chr8_2:71929460-71929479 Msa1266840:CDS 45.0%
GGATCTGCAAGGTGAAGTAA+TGG + chr8_2:71929471-71929490 Msa1266840:CDS 45.0%
CAAGGTGAAGTAATGGCATG+TGG + chr8_2:71929478-71929497 Msa1266840:CDS 45.0%
TATGTTACACTCTGTGGCTG+TGG - chr8_2:71929551-71929570 None:intergenic 45.0%
ACACTCTGTGGCTGTGGATT+TGG - chr8_2:71929545-71929564 None:intergenic 50.0%
TTGTTGGGAATCCCCGTGAT+TGG + chr8_2:71929816-71929835 Msa1266840:three_prime_UTR 50.0%
ACACTCTGTGGCTGTGGATT+TGG - chr8_2:71929545-71929564 None:intergenic 50.0%
TTGTTGGGAATCCCCGTGAT+TGG + chr8_2:71929816-71929835 Msa1266840:three_prime_UTR 50.0%
GGAGCAAGATCCGTGAGATG+AGG - chr8_2:71928898-71928917 None:intergenic 55.0%
GGAGCAAGATCCGTGAGATG+AGG - chr8_2:71928898-71928917 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 71928798 71929953 71928798 ID=Msa1266840;Name=Msa1266840
chr8_2 mRNA 71928798 71929953 71928798 ID=Msa1266840-mRNA-1;Parent=Msa1266840;Name=Msa1266840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=278|1|1|1|1|1|2|368|77
chr8_2 exon 71928798 71929175 71928798 ID=Msa1266840-mRNA-1:exon:24151;Parent=Msa1266840-mRNA-1
chr8_2 exon 71929452 71929953 71929452 ID=Msa1266840-mRNA-1:exon:24152;Parent=Msa1266840-mRNA-1
chr8_2 five_prime_UTR 71928798 71929075 71928798 ID=Msa1266840-mRNA-1:five_prime_utr;Parent=Msa1266840-mRNA-1
chr8_2 CDS 71929076 71929175 71929076 ID=Msa1266840-mRNA-1:cds;Parent=Msa1266840-mRNA-1
chr8_2 CDS 71929452 71929585 71929452 ID=Msa1266840-mRNA-1:cds;Parent=Msa1266840-mRNA-1
chr8_2 three_prime_UTR 71929586 71929953 71929586 ID=Msa1266840-mRNA-1:three_prime_utr;Parent=Msa1266840-mRNA-1
Gene Sequence

>Msa1266840

ATGGCTTCTTGGAAGAAAACCATCGCAACACCATTCAAAAAAGCTTGTACTTTCTTTAAAGAACAACCAACAACAAGGGATCCTAAGAAGTCTCAAACAGAACAAGAGAGGCGTATAATGGATCTGCAAGGTGAAGTAATGGCATGTGGGTATGAAGATGTTCAAGTTATGTGGTCAATGCTGGATAGGTCCAAATCCACAGCCACAGAGTGTAACATAACTTCATCAAGTTGA
Protein sequence

>Msa1266840

MASWKKTIATPFKKACTFFKEQPTTRDPKKSQTEQERRIMDLQGEVMACGYEDVQVMWSMLDRSKSTATECNITSSS*