AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1406990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406990 MtrunA17_Chr4g0055811 91.036 357 6 1 1 331 1 357 0.0 663
Msa1406990 MtrunA17_Chr2g0290501 43.165 278 131 2 76 327 56 332 4.70e-79 244
Msa1406990 MtrunA17_Chr3g0102431 46.124 258 112 2 91 322 25 281 9.21e-75 231
Msa1406990 MtrunA17_Chr4g0076351 43.529 255 117 2 91 318 12 266 2.19e-72 225
Msa1406990 MtrunA17_Chr3g0120821 39.796 294 127 5 37 302 45 316 1.75e-71 225
Msa1406990 MtrunA17_Chr8g0383231 44.664 253 112 3 96 322 23 273 2.51e-68 215
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406990 AT5G47240.1 54.420 362 123 6 9 328 2 363 1.66e-131 379
Msa1406990 AT5G47240.2 50.384 391 123 7 9 328 2 392 1.57e-124 363
Msa1406990 AT5G47650.5 44.186 258 115 3 91 322 19 273 1.02e-70 221
Msa1406990 AT5G47650.3 44.186 258 115 3 91 322 19 273 1.02e-70 221
Msa1406990 AT5G47650.1 44.186 258 115 3 91 322 19 273 1.02e-70 221
Msa1406990 AT4G25434.1 43.600 250 119 2 91 319 19 267 4.83e-70 219
Msa1406990 AT5G47650.4 43.726 263 119 3 91 327 65 324 5.80e-70 221
Msa1406990 AT5G47650.2 43.726 263 119 3 91 327 66 325 6.88e-70 221
Msa1406990 AT4G25434.10 42.745 255 119 2 91 319 19 272 3.66e-69 218
Msa1406990 AT4G25434.2 39.350 277 119 3 91 319 19 294 3.26e-64 206
Msa1406990 AT4G25434.8 38.652 282 119 3 91 319 19 299 1.91e-63 204
Msa1406990 AT2G04430.2 43.750 240 105 4 91 300 10 249 2.32e-61 197
Msa1406990 AT2G04430.1 43.750 240 105 4 91 300 29 268 5.28e-61 197
Msa1406990 AT4G12720.2 41.634 257 120 4 91 319 10 264 2.17e-60 195
Msa1406990 AT4G12720.3 41.634 257 120 4 91 319 10 264 2.17e-60 195
Msa1406990 AT4G12720.1 41.634 257 120 4 91 319 10 264 2.17e-60 195
Msa1406990 AT4G25434.9 46.907 194 81 2 91 263 19 211 1.62e-57 185
Msa1406990 AT4G25434.7 45.729 199 81 2 91 263 19 216 1.05e-56 183
Msa1406990 AT2G04450.1 39.695 262 127 5 88 320 7 266 6.61e-54 178
Msa1406990 AT4G25434.4 44.271 192 86 1 149 319 31 222 1.92e-52 173
Msa1406990 AT4G25434.3 43.147 197 86 1 149 319 31 227 1.21e-51 171
Msa1406990 AT4G25434.5 43.147 197 86 1 149 319 31 227 1.21e-51 171
Msa1406990 AT4G25434.6 40.265 226 81 3 91 263 19 243 3.98e-51 170
Msa1406990 AT4G12720.5 44.776 201 82 3 91 263 10 209 1.09e-49 165
Msa1406990 AT4G25434.12 44.444 162 63 2 91 226 19 179 2.93e-42 146
Msa1406990 AT4G25434.11 38.095 189 63 3 91 226 19 206 9.67e-37 133
Msa1406990 AT4G25434.13 36.232 207 79 2 166 319 1 207 1.14e-36 131
Msa1406990 AT4G12720.6 39.560 182 81 3 166 319 1 181 1.50e-34 125
Msa1406990 AT4G12720.4 47.200 125 58 2 91 215 10 126 2.22e-29 115
Msa1406990 AT4G12720.4 41.803 122 69 2 199 319 184 304 3.03e-22 95.5
Msa1406990 AT2G04440.1 40.523 153 83 4 91 237 10 160 3.43e-29 112

Find 84 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGTTCCCATTGTATTAA+TGG 0.183525 tig0023248:-50996 Msa1406990:CDS
TGGTCTTGTTTGTGCCTAAT+TGG 0.233692 tig0023248:-51770 None:intergenic
TAGTAGTATATTTGCATATC+TGG 0.244040 tig0023248:-51569 Msa1406990:five_prime_UTR
TGCCTCAGATGACACTTATT+TGG 0.255967 tig0023248:-51060 Msa1406990:CDS
TGCAGGGAAAGAAGGGAATT+TGG 0.271776 tig0023248:-50745 Msa1406990:intron
GGATTGTGTGGTAACCTATT+TGG 0.272788 tig0023248:+50897 None:intergenic
GATATGTGATGTTAACTTAC+TGG 0.280931 tig0023248:-50097 Msa1406990:CDS
TAAATTACCTTGACAGCAAC+TGG 0.331130 tig0023248:+50689 None:intergenic
AGAGAAGTGAAGGAAGAAAC+TGG 0.340232 tig0023248:-49356 Msa1406990:CDS
ATGGAATCTTCTTGTATTAG+TGG 0.340759 tig0023248:+48892 None:intergenic
TTGTTGAAGTCATAGCATTC+AGG 0.346192 tig0023248:-49188 Msa1406990:intron
TTGAAATTGAAGGAGCAAAA+TGG 0.347302 tig0023248:-48942 Msa1406990:CDS
TTCAAATGTGGACAAAGAAT+TGG 0.348986 tig0023248:+51470 None:intergenic
CAAGTAGTTTCCAAGTTTGA+TGG 0.355833 tig0023248:-48802 Msa1406990:CDS
ATTGCACTTGTTCCTCATTT+CGG 0.363268 tig0023248:-48560 Msa1406990:three_prime_UTR
GGAAGCATGCAAGGTCCTTC+AGG 0.363281 tig0023248:+50071 None:intergenic
GTCAAAGACGTTATAGTATA+GGG 0.368106 tig0023248:+48768 None:intergenic
TGTCAAAGACGTTATAGTAT+AGG 0.374450 tig0023248:+48767 None:intergenic
ACAAGATCAGATTGCTCTAT+AGG 0.380012 tig0023248:+50713 None:intergenic
GGATTCTCATTGATCCAAAT+AGG 0.382227 tig0023248:-50911 Msa1406990:CDS
ACTGTGTTGGAAAATAATTT+AGG 0.384026 tig0023248:-48732 Msa1406990:exon
AGCATAGATGCAAAGGCATA+TGG 0.400461 tig0023248:+50876 None:intergenic
AAAATCTAGATAATCCAATT+AGG 0.407187 tig0023248:+51756 None:intergenic
ACTTGATGTGATGCATTTGC+TGG 0.407708 tig0023248:+50050 None:intergenic
GATATCTTTATTGCTCGTCT+TGG 0.413439 tig0023248:-48853 Msa1406990:CDS
GATGCCTTTGATGATGAGTA+TGG 0.416511 tig0023248:-50936 Msa1406990:CDS
ATATCTTTATTGCTCGTCTT+GGG 0.440305 tig0023248:-48852 Msa1406990:CDS
ATATAGTTCGATACATGTTA+AGG 0.460517 tig0023248:-51639 Msa1406990:five_prime_UTR
CAATACCACCATGCAGAGCC+AGG 0.462871 tig0023248:-50119 Msa1406990:CDS
ACTTGTTCCTCATTTCGGTT+TGG 0.469207 tig0023248:-48555 Msa1406990:three_prime_UTR
AGTTGATCCATTAATACAAT+GGG 0.469605 tig0023248:+50989 None:intergenic
TCTTTGTCCACATTTGAAGT+TGG 0.473737 tig0023248:-51465 Msa1406990:CDS
TCTGGATTGTGATCTCTCAT+TGG 0.490334 tig0023248:-51551 Msa1406990:five_prime_UTR
TAAGTTAACATCACATATCC+TGG 0.491360 tig0023248:+50101 None:intergenic
GCATCACATCAAGTCGGAAT+CGG 0.491928 tig0023248:-50041 Msa1406990:CDS
CAGGCAGAGGAGATTTATAC+AGG 0.497331 tig0023248:-49386 Msa1406990:CDS
GGACATCAATAGTAGTGTAT+TGG 0.497750 tig0023248:+48691 None:intergenic
TTTGTTTATCTCTTTCTCAC+TGG 0.499015 tig0023248:-50854 Msa1406990:CDS
GGTAAATAGTGTCAGTGATC+AGG 0.503010 tig0023248:-51515 Msa1406990:five_prime_UTR
GAGAATCTTCACTAAAATCA+AGG 0.504165 tig0023248:+51613 None:intergenic
GTGGATGATCTTGAAATTGA+AGG 0.507225 tig0023248:-48952 Msa1406990:CDS
TCTTGTTCCAGTTGCTGTCA+AGG 0.509061 tig0023248:-50696 Msa1406990:intron
TGTGATCTCTCATTGGAGAC+TGG 0.514900 tig0023248:-51544 Msa1406990:five_prime_UTR
GAGAAGTGAAGGAAGAAACT+GGG 0.516226 tig0023248:-49355 Msa1406990:CDS
CTACTTTCCAAACCGAAATG+AGG 0.516325 tig0023248:+48548 None:intergenic
AGGAGCTGTAAGAGAAGTGA+AGG 0.519985 tig0023248:-49366 Msa1406990:CDS
ATATCAATAAAGAGTTGCTA+TGG 0.528372 tig0023248:-48596 Msa1406990:three_prime_UTR
CTCATTGGAGACTGGAATTG+TGG 0.534912 tig0023248:-51536 Msa1406990:five_prime_UTR
TTATATGTTACATATTCTAC+CGG 0.542353 tig0023248:+48670 None:intergenic
AAGTTGATCCATTAATACAA+TGG 0.544572 tig0023248:+50988 None:intergenic
TAAACAAAGCATAGATGCAA+AGG 0.547763 tig0023248:+50869 None:intergenic
TGATTCAATAAATTACAAGA+TGG 0.551238 tig0023248:+48495 None:intergenic
GAATATGTAACATATAATTG+AGG 0.554318 tig0023248:-48664 Msa1406990:three_prime_UTR
ATCTACAATCTTCTTGAACA+TGG 0.556041 tig0023248:+48873 None:intergenic
TTCAATAAATTACAAGATGG+AGG 0.558417 tig0023248:+48498 None:intergenic
TCTTTCTCACTGGAAAAGAA+TGG 0.560278 tig0023248:-50844 Msa1406990:intron
AAGAGTTGCTATGGAACATG+AGG 0.567194 tig0023248:-48587 Msa1406990:three_prime_UTR
AATGATGATTCCAACTGTGT+TGG 0.569974 tig0023248:-48745 Msa1406990:CDS
CCCTCCATACTCATCATCAA+AGG 0.576216 tig0023248:+50932 None:intergenic
GCATTTGCTGGAAGCATGCA+AGG 0.587186 tig0023248:+50062 None:intergenic
TCACATATCCTGGCTCTGCA+TGG 0.590682 tig0023248:+50111 None:intergenic
AATACACTACTATTGATGTC+CGG 0.596781 tig0023248:-48689 Msa1406990:three_prime_UTR
TTAACTTACTGGATTCCTGA+AGG 0.599287 tig0023248:-50086 Msa1406990:CDS
ATTTGAGTAAAGAAACATCA+TGG 0.600319 tig0023248:+51660 None:intergenic
AGAAGTGAAGGAAGAAACTG+GGG 0.603388 tig0023248:-49354 Msa1406990:intron
AATAGTGTCAGTGATCAGGA+TGG 0.610765 tig0023248:-51511 Msa1406990:exon
TCACATCAAGTCGGAATCGG+AGG 0.616036 tig0023248:-50038 Msa1406990:CDS
CCTAAAACTTGTGAACAAAG+TGG 0.620183 tig0023248:+51431 None:intergenic
CCTTTGATGATGAGTATGGA+GGG 0.620814 tig0023248:-50932 Msa1406990:CDS
ACAGTGATCGTAGATGATAG+TGG 0.623914 tig0023248:+48973 None:intergenic
CCTCAGTTCAAGTGCCGCAG+AGG 0.632039 tig0023248:-51384 Msa1406990:intron
TGCTCTACAAACTCAACCAG+TGG 0.632663 tig0023248:+48916 None:intergenic
GCAAATATACTACTATGTGA+CGG 0.641189 tig0023248:+51577 None:intergenic
AGGAGCAAAATGGATGCCAC+TGG 0.654186 tig0023248:-48932 Msa1406990:CDS
CATATCCTGGCTCTGCATGG+TGG 0.655970 tig0023248:+50114 None:intergenic
TTCTAGGCATGTACACAATG+TGG 0.663546 tig0023248:-49037 Msa1406990:intron
GCAAATGCATCACATCAAGT+CGG 0.666360 tig0023248:-50047 Msa1406990:CDS
GCCTTTGATGATGAGTATGG+AGG 0.668533 tig0023248:-50933 Msa1406990:CDS
AGTGTCAGTGATCAGGATGG+AGG 0.668878 tig0023248:-51508 Msa1406990:exon
CGTCTTGGGAAACGTTACTG+TGG 0.668940 tig0023248:-48838 Msa1406990:CDS
AGAGTTGCTATGGAACATGA+GGG 0.669158 tig0023248:-48586 Msa1406990:three_prime_UTR
TGCCAAATAAGTGTCATCTG+AGG 0.672505 tig0023248:+51058 None:intergenic
GCAAAGGCATATGGATTGTG+TGG 0.674954 tig0023248:+50885 None:intergenic
ACTATCATCTACGATCACTG+TGG 0.741537 tig0023248:-48971 Msa1406990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATTTTATTCAATCTTA+TGG - tig0023248:50666-50685 Msa1406990:intron 15.0%
!!! TTTTATTTACATCAAAACTT+AGG + tig0023248:50923-50942 None:intergenic 15.0%
!! AAAAATTGAACTTATTCATA+AGG - tig0023248:50945-50964 Msa1406990:CDS 15.0%
!! AAAATCTAGATAATCCAATT+AGG + tig0023248:48484-48503 None:intergenic 20.0%
!! AGCTGATATTTGAATTTAAT+TGG - tig0023248:49061-49080 Msa1406990:intron 20.0%
!!! AGTTTAACATCTTTAATTTC+AGG - tig0023248:49133-49152 Msa1406990:intron 20.0%
!!! GTTTAACATCTTTAATTTCA+GGG - tig0023248:49134-49153 Msa1406990:intron 20.0%
!! TTCTTTATTAATAGAAATGC+AGG + tig0023248:49578-49597 None:intergenic 20.0%
!!! TAACTTGTAATTACGTTAAA+CGG + tig0023248:49678-49697 None:intergenic 20.0%
!! TTGGTTATATTAATTGTCTT+AGG - tig0023248:49716-49735 Msa1406990:intron 20.0%
!! AATTTATTCGTCTATTTGTT+GGG - tig0023248:49818-49837 Msa1406990:intron 20.0%
!!! CAAATTTGATCAAATTTTCT+AGG - tig0023248:49979-49998 Msa1406990:intron 20.0%
!! TTCTTCTAACAAATTTGTAA+AGG - tig0023248:50396-50415 Msa1406990:intron 20.0%
!! CAATTTATGTTTAAATACCA+CGG - tig0023248:50700-50719 Msa1406990:CDS 20.0%
!! ACATAATGACATTACATAAA+CGG + tig0023248:50797-50816 None:intergenic 20.0%
!! TTATATGTTACATATTCTAC+CGG + tig0023248:51570-51589 None:intergenic 20.0%
!! GAATATGTAACATATAATTG+AGG - tig0023248:51573-51592 Msa1406990:five_prime_UTR 20.0%
!! TGATTCAATAAATTACAAGA+TGG + tig0023248:51745-51764 None:intergenic 20.0%
! ATTTGAGTAAAGAAACATCA+TGG + tig0023248:48580-48599 None:intergenic 25.0%
! ATATAGTTCGATACATGTTA+AGG - tig0023248:48598-48617 Msa1406990:three_prime_UTR 25.0%
! TAGTAGTATATTTGCATATC+TGG - tig0023248:48668-48687 Msa1406990:three_prime_UTR 25.0%
!! AAATTTTCCAACTTCAAATG+TGG + tig0023248:48782-48801 None:intergenic 25.0%
! AGCTTATATGAGAATCTAAT+TGG + tig0023248:48890-48909 None:intergenic 25.0%
!! TTGCATAAAATCTAAAGTCA+TGG - tig0023248:48929-48948 Msa1406990:CDS 25.0%
!! ATCTAAAGTCATGGTTAATA+TGG - tig0023248:48938-48957 Msa1406990:CDS 25.0%
! CTAAAATGTTAAAGAGAATG+TGG - tig0023248:49096-49115 Msa1406990:intron 25.0%
! AGTTGATCCATTAATACAAT+GGG + tig0023248:49251-49270 None:intergenic 25.0%
!! AAGTTGATCCATTAATACAA+TGG + tig0023248:49252-49271 None:intergenic 25.0%
! ATTGAAAACCTAACATTATG+TGG - tig0023248:49466-49485 Msa1406990:intron 25.0%
! AATGTATAAAGTGTATCCTA+CGG - tig0023248:49742-49761 Msa1406990:intron 25.0%
! CAATTTATTCGTCTATTTGT+TGG - tig0023248:49817-49836 Msa1406990:intron 25.0%
! ACAATGCTTGTAAAACAAAA+AGG - tig0023248:49868-49887 Msa1406990:intron 25.0%
! TCAATCAAAACAATGAAGTA+TGG - tig0023248:50230-50249 Msa1406990:intron 25.0%
! ATATCATTATCATGCTATGT+TGG + tig0023248:50282-50301 None:intergenic 25.0%
!! ATTTGGTTTATTGAGCATTT+AGG + tig0023248:50522-50541 None:intergenic 25.0%
! ATCTGTTTACCATTGAATAA+GGG + tig0023248:50566-50585 None:intergenic 25.0%
! TATTCATAAGGTTACATGAT+AGG - tig0023248:50957-50976 Msa1406990:CDS 25.0%
! TGAACTTCTTGATAAATTCT+AGG - tig0023248:51184-51203 Msa1406990:intron 25.0%
!! AAATTATTTTCCAACACAGT+TGG + tig0023248:51505-51524 None:intergenic 25.0%
! ACTGTGTTGGAAAATAATTT+AGG - tig0023248:51505-51524 Msa1406990:exon 25.0%
! ATATCAATAAAGAGTTGCTA+TGG - tig0023248:51641-51660 Msa1406990:five_prime_UTR 25.0%
! TTCAATAAATTACAAGATGG+AGG + tig0023248:51742-51761 None:intergenic 25.0%
GAGAATCTTCACTAAAATCA+AGG + tig0023248:48627-48646 None:intergenic 30.0%
GCAAATATACTACTATGTGA+CGG + tig0023248:48663-48682 None:intergenic 30.0%
TTCAAATGTGGACAAAGAAT+TGG + tig0023248:48770-48789 None:intergenic 30.0%
!!! ACAAGTTTTAGGCACAAATT+TGG - tig0023248:48817-48836 Msa1406990:CDS 30.0%
GACTAAACTCCTTATTATCA+GGG + tig0023248:49007-49026 None:intergenic 30.0%
AGACTAAACTCCTTATTATC+AGG + tig0023248:49008-49027 None:intergenic 30.0%
TTAAAGAGAATGTGGAACAT+GGG - tig0023248:49104-49123 Msa1406990:intron 30.0%
ACAAGTTCCCATTGTATTAA+TGG - tig0023248:49241-49260 Msa1406990:intron 30.0%
TAAACAAAGCATAGATGCAA+AGG + tig0023248:49371-49390 None:intergenic 30.0%
TTTGTTTATCTCTTTCTCAC+TGG - tig0023248:49383-49402 Msa1406990:CDS 30.0%
TTTCACTAGGATAATACACA+TGG + tig0023248:49432-49451 None:intergenic 30.0%
!! TAACATTATGTGGTTTTGCA+GGG - tig0023248:49476-49495 Msa1406990:intron 30.0%
! AGTTATGATTAGTTGCAAGT+TGG - tig0023248:49697-49716 Msa1406990:intron 30.0%
AGAAACATTCACAAAATGAC+TGG - tig0023248:49956-49975 Msa1406990:intron 30.0%
TAAGTTAACATCACATATCC+TGG + tig0023248:50139-50158 None:intergenic 30.0%
GATATGTGATGTTAACTTAC+TGG - tig0023248:50140-50159 Msa1406990:intron 30.0%
! TATTTTGCAAAAGCTTTGCA+AGG - tig0023248:50299-50318 Msa1406990:intron 30.0%
TGTTCTAACAGCTTTCTATT+TGG + tig0023248:50539-50558 None:intergenic 30.0%
CATCTGTTTACCATTGAATA+AGG + tig0023248:50567-50586 None:intergenic 30.0%
! GAATTTCTTGATGACATGAT+TGG + tig0023248:51080-51099 None:intergenic 30.0%
TTGAAATTGAAGGAGCAAAA+TGG - tig0023248:51295-51314 Msa1406990:intron 30.0%
ATGGAATCTTCTTGTATTAG+TGG + tig0023248:51348-51367 None:intergenic 30.0%
ATCTACAATCTTCTTGAACA+TGG + tig0023248:51367-51386 None:intergenic 30.0%
ATATCTTTATTGCTCGTCTT+GGG - tig0023248:51385-51404 Msa1406990:CDS 30.0%
! AGTAATTTTGCCATCAAACT+TGG + tig0023248:51448-51467 None:intergenic 30.0%
GTCAAAGACGTTATAGTATA+GGG + tig0023248:51472-51491 None:intergenic 30.0%
TGTCAAAGACGTTATAGTAT+AGG + tig0023248:51473-51492 None:intergenic 30.0%
AATACACTACTATTGATGTC+CGG - tig0023248:51548-51567 Msa1406990:five_prime_UTR 30.0%
! TCTTTGTCCACATTTGAAGT+TGG - tig0023248:48772-48791 Msa1406990:CDS 35.0%
CCTAAAACTTGTGAACAAAG+TGG + tig0023248:48809-48828 None:intergenic 35.0%
! CCACTTTGTTCACAAGTTTT+AGG - tig0023248:48806-48825 Msa1406990:CDS 35.0%
TAATAAGGAGTTTAGTCTCG+AGG - tig0023248:49010-49029 Msa1406990:CDS 35.0%
GTTAAAGAGAATGTGGAACA+TGG - tig0023248:49103-49122 Msa1406990:intron 35.0%
GGATTCTCATTGATCCAAAT+AGG - tig0023248:49326-49345 Msa1406990:intron 35.0%
TCTTTCTCACTGGAAAAGAA+TGG - tig0023248:49393-49412 Msa1406990:intron 35.0%
CTGCAAAACCACATAATGTT+AGG + tig0023248:49477-49496 None:intergenic 35.0%
!! CTAACATTATGTGGTTTTGC+AGG - tig0023248:49475-49494 Msa1406990:intron 35.0%
ACAAGATCAGATTGCTCTAT+AGG + tig0023248:49527-49546 None:intergenic 35.0%
TAAATTACCTTGACAGCAAC+TGG + tig0023248:49551-49570 None:intergenic 35.0%
CAAACATCATTGCGTGATTT+AGG + tig0023248:49636-49655 None:intergenic 35.0%
AAAACTTGATACATGACCGT+AGG + tig0023248:49761-49780 None:intergenic 35.0%
!! AAAACAAAAAGGCACCATGT+TGG - tig0023248:49879-49898 Msa1406990:intron 35.0%
!!! ATTGAACTTTTTCGCCAACA+TGG + tig0023248:49896-49915 None:intergenic 35.0%
! TGAGGTAACTAGACTCATTT+TGG - tig0023248:50072-50091 Msa1406990:CDS 35.0%
TTAACTTACTGGATTCCTGA+AGG - tig0023248:50151-50170 Msa1406990:intron 35.0%
!! CAAATTTGTAAAGGTGCTTG+TGG - tig0023248:50405-50424 Msa1406990:intron 35.0%
!! ATCCAGTTGGTATTTTCCAA+AGG + tig0023248:50465-50484 None:intergenic 35.0%
GAACAGAAACCCTTATTCAA+TGG - tig0023248:50554-50573 Msa1406990:intron 35.0%
TTAGGGGAAATCATGTAAAC+TGG + tig0023248:50727-50746 None:intergenic 35.0%
TTATGTTGCGTACAGTTTAG+GGG + tig0023248:50743-50762 None:intergenic 35.0%
CTTATGTTGCGTACAGTTTA+GGG + tig0023248:50744-50763 None:intergenic 35.0%
TCTTATGTTGCGTACAGTTT+AGG + tig0023248:50745-50764 None:intergenic 35.0%
TCACTTGTGTGAATTATCTC+AGG - tig0023248:50832-50851 Msa1406990:intron 35.0%
TTGTTGAAGTCATAGCATTC+AGG - tig0023248:51049-51068 Msa1406990:CDS 35.0%
GTGGATGATCTTGAAATTGA+AGG - tig0023248:51285-51304 Msa1406990:intron 35.0%
GATATCTTTATTGCTCGTCT+TGG - tig0023248:51384-51403 Msa1406990:intron 35.0%
CAAGTAGTTTCCAAGTTTGA+TGG - tig0023248:51435-51454 Msa1406990:CDS 35.0%
AATGATGATTCCAACTGTGT+TGG - tig0023248:51492-51511 Msa1406990:CDS 35.0%
GGACATCAATAGTAGTGTAT+TGG + tig0023248:51549-51568 None:intergenic 35.0%
ATTGCACTTGTTCCTCATTT+CGG - tig0023248:51677-51696 Msa1406990:five_prime_UTR 35.0%
TCTGGATTGTGATCTCTCAT+TGG - tig0023248:48686-48705 Msa1406990:three_prime_UTR 40.0%
GGTAAATAGTGTCAGTGATC+AGG - tig0023248:48722-48741 Msa1406990:exon 40.0%
AATAGTGTCAGTGATCAGGA+TGG - tig0023248:48726-48745 Msa1406990:exon 40.0%
!!! TGGCTTTTTAGTTACCTCTG+CGG + tig0023248:48870-48889 None:intergenic 40.0%
TCATTAACTCTCCGATTCTC+AGG - tig0023248:48974-48993 Msa1406990:CDS 40.0%
CATTAACTCTCCGATTCTCA+GGG - tig0023248:48975-48994 Msa1406990:CDS 40.0%
GGGAAATGACCCTGATAATA+AGG - tig0023248:48995-49014 Msa1406990:CDS 40.0%
TGCCTCAGATGACACTTATT+TGG - tig0023248:49177-49196 Msa1406990:intron 40.0%
TGCCAAATAAGTGTCATCTG+AGG + tig0023248:49182-49201 None:intergenic 40.0%
!! GATGCCTTTGATGATGAGTA+TGG - tig0023248:49301-49320 Msa1406990:intron 40.0%
!! CCTTTGATGATGAGTATGGA+GGG - tig0023248:49305-49324 Msa1406990:intron 40.0%
GGATTGTGTGGTAACCTATT+TGG + tig0023248:49343-49362 None:intergenic 40.0%
! AGCATAGATGCAAAGGCATA+TGG + tig0023248:49364-49383 None:intergenic 40.0%
TGCTAGATGATGCTTTCACT+AGG + tig0023248:49445-49464 None:intergenic 40.0%
!! GAAGTGTTGCTGAATCTATG+AGG - tig0023248:50054-50073 Msa1406990:CDS 40.0%
ACTTGATGTGATGCATTTGC+TGG + tig0023248:50190-50209 None:intergenic 40.0%
GCAAATGCATCACATCAAGT+CGG - tig0023248:50190-50209 Msa1406990:intron 40.0%
ACCAACTGGATTCATTCATG+AGG - tig0023248:50474-50493 Msa1406990:intron 40.0%
ACCTCATGAATGAATCCAGT+TGG + tig0023248:50478-50497 None:intergenic 40.0%
AAATCATGTAAACTGGACCG+TGG + tig0023248:50720-50739 None:intergenic 40.0%
AGAGAAGTGAAGGAAGAAAC+TGG - tig0023248:50881-50900 Msa1406990:CDS 40.0%
GAGAAGTGAAGGAAGAAACT+GGG - tig0023248:50882-50901 Msa1406990:CDS 40.0%
AGAAGTGAAGGAAGAAACTG+GGG - tig0023248:50883-50902 Msa1406990:CDS 40.0%
TTCTAGGCATGTACACAATG+TGG - tig0023248:51200-51219 Msa1406990:intron 40.0%
ACAGTGATCGTAGATGATAG+TGG + tig0023248:51267-51286 None:intergenic 40.0%
ACTATCATCTACGATCACTG+TGG - tig0023248:51266-51285 Msa1406990:intron 40.0%
AAGAGTTGCTATGGAACATG+AGG - tig0023248:51650-51669 Msa1406990:five_prime_UTR 40.0%
AGAGTTGCTATGGAACATGA+GGG - tig0023248:51651-51670 Msa1406990:five_prime_UTR 40.0%
ACTTGTTCCTCATTTCGGTT+TGG - tig0023248:51682-51701 Msa1406990:five_prime_UTR 40.0%
CTACTTTCCAAACCGAAATG+AGG + tig0023248:51692-51711 None:intergenic 40.0%
TGTGATCTCTCATTGGAGAC+TGG - tig0023248:48693-48712 Msa1406990:three_prime_UTR 45.0%
CTCATTGGAGACTGGAATTG+TGG - tig0023248:48701-48720 Msa1406990:three_prime_UTR 45.0%
AGGGTCATTTCCCTGAGAAT+CGG + tig0023248:48988-49007 None:intergenic 45.0%
!! GCCTTTGATGATGAGTATGG+AGG - tig0023248:49304-49323 Msa1406990:intron 45.0%
CCCTCCATACTCATCATCAA+AGG + tig0023248:49308-49327 None:intergenic 45.0%
! GCAAAGGCATATGGATTGTG+TGG + tig0023248:49355-49374 None:intergenic 45.0%
!! TGTGGTTTTGCAGGGAAAGA+AGG - tig0023248:49484-49503 Msa1406990:intron 45.0%
!! GTGGTTTTGCAGGGAAAGAA+GGG - tig0023248:49485-49504 Msa1406990:intron 45.0%
TGCAGGGAAAGAAGGGAATT+TGG - tig0023248:49492-49511 Msa1406990:intron 45.0%
TCTTGTTCCAGTTGCTGTCA+AGG - tig0023248:49541-49560 Msa1406990:intron 45.0%
! CGTCTATTTGTTGGGCTCTA+CGG - tig0023248:49826-49845 Msa1406990:intron 45.0%
!! CATTTTGGTCTCACTGTCTC+AGG - tig0023248:50087-50106 Msa1406990:CDS 45.0%
GCATCACATCAAGTCGGAAT+CGG - tig0023248:50196-50215 Msa1406990:intron 45.0%
! GGCCTTTGGAAAATACCAAC+TGG - tig0023248:50460-50479 Msa1406990:intron 45.0%
GTGTGAATTATCTCAGGCAG+AGG - tig0023248:50838-50857 Msa1406990:intron 45.0%
CAGGCAGAGGAGATTTATAC+AGG - tig0023248:50851-50870 Msa1406990:CDS 45.0%
AGGAGCTGTAAGAGAAGTGA+AGG - tig0023248:50871-50890 Msa1406990:CDS 45.0%
TGCTCTACAAACTCAACCAG+TGG + tig0023248:51324-51343 None:intergenic 45.0%
AGTGTCAGTGATCAGGATGG+AGG - tig0023248:48729-48748 Msa1406990:exon 50.0%
TTGGTCTCACTGTCTCAGGA+AGG - tig0023248:50091-50110 Msa1406990:CDS 50.0%
!! TCACATATCCTGGCTCTGCA+TGG + tig0023248:50129-50148 None:intergenic 50.0%
! GCATTTGCTGGAAGCATGCA+AGG + tig0023248:50178-50197 None:intergenic 50.0%
TCACATCAAGTCGGAATCGG+AGG - tig0023248:50199-50218 Msa1406990:intron 50.0%
CACTGTTCTCCTGCAACTCT+TGG - tig0023248:50439-50458 Msa1406990:intron 50.0%
TTCCAAAGGCCAAGAGTTGC+AGG + tig0023248:50451-50470 None:intergenic 50.0%
AGGAGCAAAATGGATGCCAC+TGG - tig0023248:51305-51324 Msa1406990:intron 50.0%
CGTCTTGGGAAACGTTACTG+TGG - tig0023248:51399-51418 Msa1406990:CDS 50.0%
CAATACCACCATGCAGAGCC+AGG - tig0023248:50118-50137 Msa1406990:CDS 55.0%
!! CATATCCTGGCTCTGCATGG+TGG + tig0023248:50126-50145 None:intergenic 55.0%
! GGAAGCATGCAAGGTCCTTC+AGG + tig0023248:50169-50188 None:intergenic 55.0%
! CTCCTGCAACTCTTGGCCTT+TGG - tig0023248:50446-50465 Msa1406990:intron 55.0%
CCTCTGCGGCACTTGAACTG+AGG + tig0023248:48856-48875 None:intergenic 60.0%
! CCTCAGTTCAAGTGCCGCAG+AGG - tig0023248:48853-48872 Msa1406990:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0023248 gene 48480 51779 48480 ID=Msa1406990;Name=Msa1406990
tig0023248 mRNA 48480 51779 48480 ID=Msa1406990-mRNA-1;Parent=Msa1406990;Name=Msa1406990-mRNA-1;_AED=0.18;_eAED=0.18;_QI=265|0.83|1|1|1|1|7|258|331
tig0023248 exon 48480 49053 48480 ID=Msa1406990-mRNA-1:exon:24860;Parent=Msa1406990-mRNA-1
tig0023248 exon 49189 49223 49189 ID=Msa1406990-mRNA-1:exon:24859;Parent=Msa1406990-mRNA-1
tig0023248 exon 49355 49405 49355 ID=Msa1406990-mRNA-1:exon:24858;Parent=Msa1406990-mRNA-1
tig0023248 exon 50013 50150 50013 ID=Msa1406990-mRNA-1:exon:24857;Parent=Msa1406990-mRNA-1
tig0023248 exon 50697 50762 50697 ID=Msa1406990-mRNA-1:exon:24856;Parent=Msa1406990-mRNA-1
tig0023248 exon 50845 51104 50845 ID=Msa1406990-mRNA-1:exon:24855;Parent=Msa1406990-mRNA-1
tig0023248 exon 51385 51779 51385 ID=Msa1406990-mRNA-1:exon:24854;Parent=Msa1406990-mRNA-1
tig0023248 five_prime_UTR 51515 51779 51515 ID=Msa1406990-mRNA-1:five_prime_utr;Parent=Msa1406990-mRNA-1
tig0023248 CDS 51385 51514 51385 ID=Msa1406990-mRNA-1:cds;Parent=Msa1406990-mRNA-1
tig0023248 CDS 50845 51104 50845 ID=Msa1406990-mRNA-1:cds;Parent=Msa1406990-mRNA-1
tig0023248 CDS 50697 50762 50697 ID=Msa1406990-mRNA-1:cds;Parent=Msa1406990-mRNA-1
tig0023248 CDS 50013 50150 50013 ID=Msa1406990-mRNA-1:cds;Parent=Msa1406990-mRNA-1
tig0023248 CDS 49355 49405 49355 ID=Msa1406990-mRNA-1:cds;Parent=Msa1406990-mRNA-1
tig0023248 CDS 49189 49223 49189 ID=Msa1406990-mRNA-1:cds;Parent=Msa1406990-mRNA-1
tig0023248 CDS 48738 49053 48738 ID=Msa1406990-mRNA-1:cds;Parent=Msa1406990-mRNA-1
tig0023248 three_prime_UTR 48480 48737 48480 ID=Msa1406990-mRNA-1:three_prime_utr;Parent=Msa1406990-mRNA-1
Gene Sequence

>Msa1406990

ATGGAGGTGAAATCTCTCTCTTCCAATTCTTTGTCCACATTTGAAGTTGGAAAATTTTCTTCCACTTTGTTCACAAGTTTTAGGCACAAATTTGGAGTTAGATACTCTCCTCAGTTCAAGTGCCGCAGAGGGTTGTTTCTGAAGACTTATAGTGCCTCAGATGACACTTATTTGGCAGATAAAGCTGTGATTTGTTCAGATGATTTTGCATCAGAAACAAGTTCCCATTGTATTAATGGATCAACTTCAAGTTTGTATTACAGAAATCTTATACTTGATGCCTTTGATGATGAGTATGGAGGGATTCTCATTGATCCAAATAGGTTACCACACAATCCATATGCCTTTGCATCTATGCTTTGTTTATCTCTTTCTCACTGGAAAAGAATGGGAAAGAAGGGAATTTGGCTTAAGCTGCCTATAGAGCAATCTGATCTTGTTCCAGTTGCTGTCAAGGAAGGTTTTCAATACCACCATGCAGAGCCAGGATATGTGATGTTAACTTACTGGATTCCTGAAGGACCTTGCATGCTTCCAGCAAATGCATCACATCAAGTCGGAATCGGAGGATTTGTCATCAATCAAAACAATGAAGCAGAGGAGATTTATACAGGAGCTGTAAGAGAAGTGAAGGAAGAAACTGGGATTGATACAGAGTTTGTTGAAGTCATAGCATTCAGGCATGTACACAATGTGGCATTTGAGAAATCAGATTTGTTCTTCATCTGCATGCTAAAACCACTATCATCTACGATCACTGTGGATGATCTTGAAATTGAAGGAGCAAAATGGATGCCACTGGTTGAGTTTGTAGAGCAACCACTAATACAAGAAGATTCCATGTTCAAGAAGATTGTAGATATCTTTATTGCTCGTCTTGGGAAACGTTACTGTGGACTATCAACTCATCAAGTAGTTTCCAAGTTTGATGGCAAAATTACTTCCCTATACTATAACGTCTTTGACAATGATGATTCCAACTGTGTTGGAAAATAA
Protein sequence

>Msa1406990

MEVKSLSSNSLSTFEVGKFSSTLFTSFRHKFGVRYSPQFKCRRGLFLKTYSASDDTYLADKAVICSDDFASETSSHCINGSTSSLYYRNLILDAFDDEYGGILIDPNRLPHNPYAFASMLCLSLSHWKRMGKKGIWLKLPIEQSDLVPVAVKEGFQYHHAEPGYVMLTYWIPEGPCMLPANASHQVGIGGFVINQNNEAEEIYTGAVREVKEETGIDTEFVEVIAFRHVHNVAFEKSDLFFICMLKPLSSTITVDDLEIEGAKWMPLVEFVEQPLIQEDSMFKKIVDIFIARLGKRYCGLSTHQVVSKFDGKITSLYYNVFDNDDSNCVGK*