AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1219370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1219370 MtrunA17_Chr4g0069521 98.701 77 1 0 1 77 1 77 7.34e-53 158
Msa1219370 MtrunA17_Chr2g0302061 77.922 77 13 3 1 76 1 74 3.16e-36 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1219370 AT1G48330.1 65.152 66 20 3 1 63 1 66 1.32e-23 85.1
Msa1219370 AT3G17580.1 60.274 73 17 4 1 63 1 71 3.42e-21 79.3

Find 55 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAGAAGCCATTTGGTTT+TGG 0.252906 8_1:+82188438 None:intergenic
GTGCTTATGTCCAGTCCTTT+AGG 0.254502 8_1:-82188692 Msa1219370:five_prime_UTR
GATAAGAGAAGTCAATAAAA+AGG 0.255616 8_1:-82188657 Msa1219370:five_prime_UTR
ACACTCTGTGGCTGTGGATT+TGG 0.258834 8_1:+82187962 None:intergenic
TGCATCAAATATCTTGAATA+TGG 0.276681 8_1:-82187834 Msa1219370:three_prime_UTR
AAACCTGTTTGAGACTTCTT+AGG 0.295118 8_1:+82188347 None:intergenic
ACCAAAACCAAATGGCTTCT+TGG 0.316100 8_1:-82188439 Msa1219370:exon
TCTTTGATGAAGAAGAATTA+AGG 0.328607 8_1:-82187756 Msa1219370:three_prime_UTR
GTCAAAATGTTAGTACTTGT+TGG 0.336762 8_1:-82187704 Msa1219370:three_prime_UTR
TTCTTAGGATCCCTTGTTGT+TGG 0.351825 8_1:+82188362 None:intergenic
TTATATAATATATATTATAT+AGG 0.357294 8_1:+82188539 None:intergenic
TTATATGCTAATTAATGTTA+AGG 0.373939 8_1:-82187867 Msa1219370:three_prime_UTR
AGAACAAGAGAGGCGTATAA+TGG 0.401789 8_1:-82188054 Msa1219370:CDS
TCAAAATGTTAGTACTTGTT+GGG 0.424308 8_1:-82187703 Msa1219370:three_prime_UTR
TACATTCATTTGCAAAGATA+AGG 0.427064 8_1:-82188503 Msa1219370:five_prime_UTR
ACATTCGCTAATTTATGCAC+TGG 0.461046 8_1:+82187894 None:intergenic
TGCAAATGAATGTATTCTCT+AGG 0.462994 8_1:+82188512 None:intergenic
TTATGCACTGGGACTTCAAA+GGG 0.464235 8_1:+82187906 None:intergenic
CATTCGCTAATTTATGCACT+GGG 0.478527 8_1:+82187895 None:intergenic
GCAAATGAATGTATTCTCTA+GGG 0.489660 8_1:+82188513 None:intergenic
TATGTTACACTCTGTGGCTG+TGG 0.492905 8_1:+82187956 None:intergenic
GATCCTAAGAAGTCTCAAAC+AGG 0.499805 8_1:-82188350 Msa1219370:intron
ATGGTATGAATGTAATGTAA+TGG 0.502131 8_1:-82187815 Msa1219370:three_prime_UTR
TCAAGTTATGTGGTCAATGC+TGG 0.502431 8_1:-82187991 Msa1219370:CDS
ATCTCTCTCATCAAACCTAA+AGG 0.510453 8_1:+82188677 None:intergenic
GTCAATCAACCAAAACCAAA+TGG 0.522048 8_1:-82188447 Msa1219370:exon
TGATATTCTTTCACCAATCA+CGG 0.527224 8_1:+82187675 None:intergenic
TTGTTGGGAATCCCCGTGAT+TGG 0.536042 8_1:-82187688 Msa1219370:three_prime_UTR
GATATTCTTTCACCAATCAC+GGG 0.538061 8_1:+82187676 None:intergenic
ATGAAGATGTTCAAGTTATG+TGG 0.553111 8_1:-82188001 Msa1219370:CDS
TCTCATCAAACCTAAAGGAC+TGG 0.554967 8_1:+82188682 None:intergenic
GGATCTGCAAGGTGAAGTAA+TGG 0.564236 8_1:-82188033 Msa1219370:CDS
GATGAGGTTAAGATTGTGGA+AGG 0.564443 8_1:+82188625 None:intergenic
GTGAGATGAGGTTAAGATTG+TGG 0.565747 8_1:+82188621 None:intergenic
TTTATGCACTGGGACTTCAA+AGG 0.569375 8_1:+82187905 None:intergenic
TTATGTGGTCAATGCTGGAT+AGG 0.570689 8_1:-82187986 Msa1219370:CDS
ACACAGAGAGAAGGAAAGAG+AGG 0.582028 8_1:+82188588 None:intergenic
TACTTATTGAACCGTCAAAG+AGG 0.594531 8_1:+82187609 None:intergenic
CAAACACAAACACAGAGAGA+AGG 0.597186 8_1:+82188579 None:intergenic
ATGAAGAAGAATTAAGGTGG+CGG 0.597770 8_1:-82187750 Msa1219370:three_prime_UTR
GGAGCAAGATCCGTGAGATG+AGG 0.611544 8_1:+82188609 None:intergenic
TTGATGAAGAAGAATTAAGG+TGG 0.614747 8_1:-82187753 Msa1219370:three_prime_UTR
TATTGTTTACAGAACAAGAG+AGG 0.616356 8_1:-82188064 Msa1219370:intron
GTATAGAGAAGCATATTCAA+AGG 0.628569 8_1:-82188481 Msa1219370:five_prime_UTR
TTAAAGAACAACCAACAACA+AGG 0.633465 8_1:-82188373 Msa1219370:CDS
TGAAGTTATGTTACACTCTG+TGG 0.635521 8_1:+82187950 None:intergenic
ACAATCTTAACCTCATCTCA+CGG 0.636961 8_1:-82188619 Msa1219370:five_prime_UTR
CAAGGTGAAGTAATGGCATG+TGG 0.637142 8_1:-82188026 Msa1219370:CDS
ATGTAAAAGAACCAAACACA+AGG 0.662731 8_1:+82187572 None:intergenic
TAAAGAACAACCAACAACAA+GGG 0.675428 8_1:-82188372 Msa1219370:CDS
AGGCGTATAATGGATCTGCA+AGG 0.696517 8_1:-82188044 Msa1219370:CDS
ATATTCTTTCACCAATCACG+GGG 0.713644 8_1:+82187677 None:intergenic
TGATTGGTGAAAGAATATCA+TGG 0.714774 8_1:-82187672 Msa1219370:three_prime_UTR
TGTAAAAGAACCAAACACAA+GGG 0.715508 8_1:+82187573 None:intergenic
AAGGTGAAGTAATGGCATGT+GGG 0.724189 8_1:-82188025 Msa1219370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAATATATATTATAT+AGG + chr8_1:82187743-82187762 None:intergenic 0.0%
!! TTATATAATATATATTATAT+AGG + chr8_1:82187743-82187762 None:intergenic 0.0%
!!! AAGTACAATTTTAAATTATA+AGG + chr8_1:82188110-82188129 None:intergenic 10.0%
!!! GTACTTTTATTTATTTTTTA+CGG - chr8_1:82188124-82188143 Msa1219370:intron 10.0%
!!! AAGTACAATTTTAAATTATA+AGG + chr8_1:82188110-82188129 None:intergenic 10.0%
!!! GTACTTTTATTTATTTTTTA+CGG - chr8_1:82188124-82188143 Msa1219370:intron 10.0%
!!! TTATTCAAATAGTATTTTGT+CGG - chr8_1:82188064-82188083 Msa1219370:intron 15.0%
!! AAAAAATGAGTTAAATAATG+TGG + chr8_1:82188195-82188214 None:intergenic 15.0%
!! TTATATGCTAATTAATGTTA+AGG - chr8_1:82188412-82188431 Msa1219370:CDS 15.0%
!!! TTATTCAAATAGTATTTTGT+CGG - chr8_1:82188064-82188083 Msa1219370:intron 15.0%
!! AAAAAATGAGTTAAATAATG+TGG + chr8_1:82188195-82188214 None:intergenic 15.0%
!! TTATATGCTAATTAATGTTA+AGG - chr8_1:82188412-82188431 Msa1219370:CDS 15.0%
!!! AAATGAAGATTTAAGATTGT+GGG + chr8_1:82187969-82187988 None:intergenic 20.0%
!!! ATTGAAAGTACAATTTCTTT+TGG + chr8_1:82188171-82188190 None:intergenic 20.0%
!! TCTTCATCAAAGAAAAAAAA+GGG + chr8_1:82188516-82188535 None:intergenic 20.0%
!! TTCTTCATCAAAGAAAAAAA+AGG + chr8_1:82188517-82188536 None:intergenic 20.0%
!!! AAATGAAGATTTAAGATTGT+GGG + chr8_1:82187969-82187988 None:intergenic 20.0%
!!! ATTGAAAGTACAATTTCTTT+TGG + chr8_1:82188171-82188190 None:intergenic 20.0%
!! TCTTCATCAAAGAAAAAAAA+GGG + chr8_1:82188516-82188535 None:intergenic 20.0%
!! TTCTTCATCAAAGAAAAAAA+AGG + chr8_1:82188517-82188536 None:intergenic 20.0%
! GATAAGAGAAGTCAATAAAA+AGG - chr8_1:82187622-82187641 Msa1219370:three_prime_UTR 25.0%
! TACATTCATTTGCAAAGATA+AGG - chr8_1:82187776-82187795 Msa1219370:three_prime_UTR 25.0%
!!! AAAGTACAAGCTTTTTTGAA+TGG + chr8_1:82187884-82187903 None:intergenic 25.0%
!! GAAATGAAGATTTAAGATTG+TGG + chr8_1:82187970-82187989 None:intergenic 25.0%
! TGCATCAAATATCTTGAATA+TGG - chr8_1:82188445-82188464 Msa1219370:exon 25.0%
! ATGGTATGAATGTAATGTAA+TGG - chr8_1:82188464-82188483 Msa1219370:five_prime_UTR 25.0%
! CTTCATCAAAGAAAAAAAAG+GGG + chr8_1:82188515-82188534 None:intergenic 25.0%
! TCTTTGATGAAGAAGAATTA+AGG - chr8_1:82188523-82188542 Msa1219370:five_prime_UTR 25.0%
! TCAAAATGTTAGTACTTGTT+GGG - chr8_1:82188576-82188595 Msa1219370:five_prime_UTR 25.0%
!!! GGTGAGATTTTTTTAATGAA+AGG - chr8_1:82188628-82188647 Msa1219370:five_prime_UTR 25.0%
! GATAAGAGAAGTCAATAAAA+AGG - chr8_1:82187622-82187641 Msa1219370:three_prime_UTR 25.0%
! TACATTCATTTGCAAAGATA+AGG - chr8_1:82187776-82187795 Msa1219370:three_prime_UTR 25.0%
!!! AAAGTACAAGCTTTTTTGAA+TGG + chr8_1:82187884-82187903 None:intergenic 25.0%
!! GAAATGAAGATTTAAGATTG+TGG + chr8_1:82187970-82187989 None:intergenic 25.0%
! TGCATCAAATATCTTGAATA+TGG - chr8_1:82188445-82188464 Msa1219370:exon 25.0%
! ATGGTATGAATGTAATGTAA+TGG - chr8_1:82188464-82188483 Msa1219370:five_prime_UTR 25.0%
! CTTCATCAAAGAAAAAAAAG+GGG + chr8_1:82188515-82188534 None:intergenic 25.0%
! TCTTTGATGAAGAAGAATTA+AGG - chr8_1:82188523-82188542 Msa1219370:five_prime_UTR 25.0%
! TCAAAATGTTAGTACTTGTT+GGG - chr8_1:82188576-82188595 Msa1219370:five_prime_UTR 25.0%
!!! GGTGAGATTTTTTTAATGAA+AGG - chr8_1:82188628-82188647 Msa1219370:five_prime_UTR 25.0%
GCAAATGAATGTATTCTCTA+GGG + chr8_1:82187769-82187788 None:intergenic 30.0%
TGCAAATGAATGTATTCTCT+AGG + chr8_1:82187770-82187789 None:intergenic 30.0%
! GTATAGAGAAGCATATTCAA+AGG - chr8_1:82187798-82187817 Msa1219370:three_prime_UTR 30.0%
TTAAAGAACAACCAACAACA+AGG - chr8_1:82187906-82187925 Msa1219370:three_prime_UTR 30.0%
TAAAGAACAACCAACAACAA+GGG - chr8_1:82187907-82187926 Msa1219370:three_prime_UTR 30.0%
TATTGTTTACAGAACAAGAG+AGG - chr8_1:82188215-82188234 Msa1219370:intron 30.0%
! ATGAAGATGTTCAAGTTATG+TGG - chr8_1:82188278-82188297 Msa1219370:intron 30.0%
TTGATGAAGAAGAATTAAGG+TGG - chr8_1:82188526-82188545 Msa1219370:five_prime_UTR 30.0%
GTCAAAATGTTAGTACTTGT+TGG - chr8_1:82188575-82188594 Msa1219370:five_prime_UTR 30.0%
TGATATTCTTTCACCAATCA+CGG + chr8_1:82188607-82188626 None:intergenic 30.0%
TGATTGGTGAAAGAATATCA+TGG - chr8_1:82188607-82188626 Msa1219370:five_prime_UTR 30.0%
! TACAATTTTACCCTTGTGTT+TGG - chr8_1:82188696-82188715 Msa1219370:five_prime_UTR 30.0%
TGTAAAAGAACCAAACACAA+GGG + chr8_1:82188709-82188728 None:intergenic 30.0%
GCAAATGAATGTATTCTCTA+GGG + chr8_1:82187769-82187788 None:intergenic 30.0%
TGCAAATGAATGTATTCTCT+AGG + chr8_1:82187770-82187789 None:intergenic 30.0%
! GTATAGAGAAGCATATTCAA+AGG - chr8_1:82187798-82187817 Msa1219370:three_prime_UTR 30.0%
TTAAAGAACAACCAACAACA+AGG - chr8_1:82187906-82187925 Msa1219370:three_prime_UTR 30.0%
TAAAGAACAACCAACAACAA+GGG - chr8_1:82187907-82187926 Msa1219370:three_prime_UTR 30.0%
TATTGTTTACAGAACAAGAG+AGG - chr8_1:82188215-82188234 Msa1219370:intron 30.0%
! ATGAAGATGTTCAAGTTATG+TGG - chr8_1:82188278-82188297 Msa1219370:intron 30.0%
TTGATGAAGAAGAATTAAGG+TGG - chr8_1:82188526-82188545 Msa1219370:five_prime_UTR 30.0%
GTCAAAATGTTAGTACTTGT+TGG - chr8_1:82188575-82188594 Msa1219370:five_prime_UTR 30.0%
TGATATTCTTTCACCAATCA+CGG + chr8_1:82188607-82188626 None:intergenic 30.0%
TGATTGGTGAAAGAATATCA+TGG - chr8_1:82188607-82188626 Msa1219370:five_prime_UTR 30.0%
! TACAATTTTACCCTTGTGTT+TGG - chr8_1:82188696-82188715 Msa1219370:five_prime_UTR 30.0%
TGTAAAAGAACCAAACACAA+GGG + chr8_1:82188709-82188728 None:intergenic 30.0%
ATCTCTCTCATCAAACCTAA+AGG + chr8_1:82187605-82187624 None:intergenic 35.0%
ACAATCTTAACCTCATCTCA+CGG - chr8_1:82187660-82187679 Msa1219370:three_prime_UTR 35.0%
GTCAATCAACCAAAACCAAA+TGG - chr8_1:82187832-82187851 Msa1219370:three_prime_UTR 35.0%
! TTTTCTTCCAAGAAGCCATT+TGG + chr8_1:82187850-82187869 None:intergenic 35.0%
!!! TTTTTTGAATGGTGTTGCGA+TGG + chr8_1:82187873-82187892 None:intergenic 35.0%
! AAACCTGTTTGAGACTTCTT+AGG + chr8_1:82187935-82187954 None:intergenic 35.0%
TGAAGTTATGTTACACTCTG+TGG + chr8_1:82188332-82188351 None:intergenic 35.0%
CATTCGCTAATTTATGCACT+GGG + chr8_1:82188387-82188406 None:intergenic 35.0%
ACATTCGCTAATTTATGCAC+TGG + chr8_1:82188388-82188407 None:intergenic 35.0%
ATGAAGAAGAATTAAGGTGG+CGG - chr8_1:82188529-82188548 Msa1219370:five_prime_UTR 35.0%
ATATTCTTTCACCAATCACG+GGG + chr8_1:82188605-82188624 None:intergenic 35.0%
GATATTCTTTCACCAATCAC+GGG + chr8_1:82188606-82188625 None:intergenic 35.0%
TACTTATTGAACCGTCAAAG+AGG + chr8_1:82188673-82188692 None:intergenic 35.0%
ATCTCTCTCATCAAACCTAA+AGG + chr8_1:82187605-82187624 None:intergenic 35.0%
ACAATCTTAACCTCATCTCA+CGG - chr8_1:82187660-82187679 Msa1219370:three_prime_UTR 35.0%
GTCAATCAACCAAAACCAAA+TGG - chr8_1:82187832-82187851 Msa1219370:three_prime_UTR 35.0%
! TTTTCTTCCAAGAAGCCATT+TGG + chr8_1:82187850-82187869 None:intergenic 35.0%
!!! TTTTTTGAATGGTGTTGCGA+TGG + chr8_1:82187873-82187892 None:intergenic 35.0%
! AAACCTGTTTGAGACTTCTT+AGG + chr8_1:82187935-82187954 None:intergenic 35.0%
TGAAGTTATGTTACACTCTG+TGG + chr8_1:82188332-82188351 None:intergenic 35.0%
CATTCGCTAATTTATGCACT+GGG + chr8_1:82188387-82188406 None:intergenic 35.0%
ACATTCGCTAATTTATGCAC+TGG + chr8_1:82188388-82188407 None:intergenic 35.0%
ATGAAGAAGAATTAAGGTGG+CGG - chr8_1:82188529-82188548 Msa1219370:five_prime_UTR 35.0%
ATATTCTTTCACCAATCACG+GGG + chr8_1:82188605-82188624 None:intergenic 35.0%
GATATTCTTTCACCAATCAC+GGG + chr8_1:82188606-82188625 None:intergenic 35.0%
TACTTATTGAACCGTCAAAG+AGG + chr8_1:82188673-82188692 None:intergenic 35.0%
TCTCATCAAACCTAAAGGAC+TGG + chr8_1:82187600-82187619 None:intergenic 40.0%
GATGAGGTTAAGATTGTGGA+AGG + chr8_1:82187657-82187676 None:intergenic 40.0%
GTGAGATGAGGTTAAGATTG+TGG + chr8_1:82187661-82187680 None:intergenic 40.0%
CAAACACAAACACAGAGAGA+AGG + chr8_1:82187703-82187722 None:intergenic 40.0%
ACCAAAACCAAATGGCTTCT+TGG - chr8_1:82187840-82187859 Msa1219370:three_prime_UTR 40.0%
!! TCCAAGAAGCCATTTGGTTT+TGG + chr8_1:82187844-82187863 None:intergenic 40.0%
! TTCTTAGGATCCCTTGTTGT+TGG + chr8_1:82187920-82187939 None:intergenic 40.0%
GATCCTAAGAAGTCTCAAAC+AGG - chr8_1:82187929-82187948 Msa1219370:exon 40.0%
! AGAACAAGAGAGGCGTATAA+TGG - chr8_1:82188225-82188244 Msa1219370:intron 40.0%
AAGGTGAAGTAATGGCATGT+GGG - chr8_1:82188254-82188273 Msa1219370:intron 40.0%
TCAAGTTATGTGGTCAATGC+TGG - chr8_1:82188288-82188307 Msa1219370:intron 40.0%
TTATGTGGTCAATGCTGGAT+AGG - chr8_1:82188293-82188312 Msa1219370:intron 40.0%
TTATGCACTGGGACTTCAAA+GGG + chr8_1:82188376-82188395 None:intergenic 40.0%
TTTATGCACTGGGACTTCAA+AGG + chr8_1:82188377-82188396 None:intergenic 40.0%
!!! TTAAGGTGGCGGTTTTAGTT+TGG - chr8_1:82188540-82188559 Msa1219370:five_prime_UTR 40.0%
! GTGTCTGTTTTCCTCTTTGA+CGG - chr8_1:82188659-82188678 Msa1219370:five_prime_UTR 40.0%
TCTCATCAAACCTAAAGGAC+TGG + chr8_1:82187600-82187619 None:intergenic 40.0%
GATGAGGTTAAGATTGTGGA+AGG + chr8_1:82187657-82187676 None:intergenic 40.0%
GTGAGATGAGGTTAAGATTG+TGG + chr8_1:82187661-82187680 None:intergenic 40.0%
CAAACACAAACACAGAGAGA+AGG + chr8_1:82187703-82187722 None:intergenic 40.0%
ACCAAAACCAAATGGCTTCT+TGG - chr8_1:82187840-82187859 Msa1219370:three_prime_UTR 40.0%
!! TCCAAGAAGCCATTTGGTTT+TGG + chr8_1:82187844-82187863 None:intergenic 40.0%
! TTCTTAGGATCCCTTGTTGT+TGG + chr8_1:82187920-82187939 None:intergenic 40.0%
GATCCTAAGAAGTCTCAAAC+AGG - chr8_1:82187929-82187948 Msa1219370:exon 40.0%
! AGAACAAGAGAGGCGTATAA+TGG - chr8_1:82188225-82188244 Msa1219370:intron 40.0%
AAGGTGAAGTAATGGCATGT+GGG - chr8_1:82188254-82188273 Msa1219370:intron 40.0%
TCAAGTTATGTGGTCAATGC+TGG - chr8_1:82188288-82188307 Msa1219370:intron 40.0%
TTATGTGGTCAATGCTGGAT+AGG - chr8_1:82188293-82188312 Msa1219370:intron 40.0%
TTATGCACTGGGACTTCAAA+GGG + chr8_1:82188376-82188395 None:intergenic 40.0%
TTTATGCACTGGGACTTCAA+AGG + chr8_1:82188377-82188396 None:intergenic 40.0%
!!! TTAAGGTGGCGGTTTTAGTT+TGG - chr8_1:82188540-82188559 Msa1219370:five_prime_UTR 40.0%
! GTGTCTGTTTTCCTCTTTGA+CGG - chr8_1:82188659-82188678 Msa1219370:five_prime_UTR 40.0%
GTGCTTATGTCCAGTCCTTT+AGG - chr8_1:82187587-82187606 Msa1219370:three_prime_UTR 45.0%
ACACAGAGAGAAGGAAAGAG+AGG + chr8_1:82187694-82187713 None:intergenic 45.0%
!! AGGCGTATAATGGATCTGCA+AGG - chr8_1:82188235-82188254 Msa1219370:intron 45.0%
GGATCTGCAAGGTGAAGTAA+TGG - chr8_1:82188246-82188265 Msa1219370:intron 45.0%
CAAGGTGAAGTAATGGCATG+TGG - chr8_1:82188253-82188272 Msa1219370:intron 45.0%
TATGTTACACTCTGTGGCTG+TGG + chr8_1:82188326-82188345 None:intergenic 45.0%
GTGCTTATGTCCAGTCCTTT+AGG - chr8_1:82187587-82187606 Msa1219370:three_prime_UTR 45.0%
ACACAGAGAGAAGGAAAGAG+AGG + chr8_1:82187694-82187713 None:intergenic 45.0%
!! AGGCGTATAATGGATCTGCA+AGG - chr8_1:82188235-82188254 Msa1219370:intron 45.0%
GGATCTGCAAGGTGAAGTAA+TGG - chr8_1:82188246-82188265 Msa1219370:intron 45.0%
CAAGGTGAAGTAATGGCATG+TGG - chr8_1:82188253-82188272 Msa1219370:intron 45.0%
TATGTTACACTCTGTGGCTG+TGG + chr8_1:82188326-82188345 None:intergenic 45.0%
ACACTCTGTGGCTGTGGATT+TGG + chr8_1:82188320-82188339 None:intergenic 50.0%
TTGTTGGGAATCCCCGTGAT+TGG - chr8_1:82188591-82188610 Msa1219370:five_prime_UTR 50.0%
ACACTCTGTGGCTGTGGATT+TGG + chr8_1:82188320-82188339 None:intergenic 50.0%
TTGTTGGGAATCCCCGTGAT+TGG - chr8_1:82188591-82188610 Msa1219370:five_prime_UTR 50.0%
GGAGCAAGATCCGTGAGATG+AGG + chr8_1:82187673-82187692 None:intergenic 55.0%
GGAGCAAGATCCGTGAGATG+AGG + chr8_1:82187673-82187692 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 82187573 82188728 82187573 ID=Msa1219370;Name=Msa1219370
chr8_1 mRNA 82187573 82188728 82187573 ID=Msa1219370-mRNA-1;Parent=Msa1219370;Name=Msa1219370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=278|1|1|1|1|1|2|368|77
chr8_1 exon 82187573 82188074 82187573 ID=Msa1219370-mRNA-1:exon:29179;Parent=Msa1219370-mRNA-1
chr8_1 exon 82188351 82188728 82188351 ID=Msa1219370-mRNA-1:exon:29178;Parent=Msa1219370-mRNA-1
chr8_1 five_prime_UTR 82188451 82188728 82188451 ID=Msa1219370-mRNA-1:five_prime_utr;Parent=Msa1219370-mRNA-1
chr8_1 CDS 82188351 82188450 82188351 ID=Msa1219370-mRNA-1:cds;Parent=Msa1219370-mRNA-1
chr8_1 CDS 82187941 82188074 82187941 ID=Msa1219370-mRNA-1:cds;Parent=Msa1219370-mRNA-1
chr8_1 three_prime_UTR 82187573 82187940 82187573 ID=Msa1219370-mRNA-1:three_prime_utr;Parent=Msa1219370-mRNA-1
Gene Sequence

>Msa1219370

ATGGCTTCTTGGAAGAAAACCATCGCAACACCATTCAAAAAAGCTTGTACTTTCTTTAAAGAACAACCAACAACAAGGGATCCTAAGAAGTCTCAAACAGAACAAGAGAGGCGTATAATGGATCTGCAAGGTGAAGTAATGGCATGTGGGTATGAAGATGTTCAAGTTATGTGGTCAATGCTGGATAGGTCCAAATCCACAGCCACAGAGTGTAACATAACTTCATCAAGTTGA
Protein sequence

>Msa1219370

MASWKKTIATPFKKACTFFKEQPTTRDPKKSQTEQERRIMDLQGEVMACGYEDVQVMWSMLDRSKSTATECNITSSS*