AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1395750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395750 MtrunA17_Chr4g0069521 98.701 77 1 0 1 77 1 77 7.34e-53 158
Msa1395750 MtrunA17_Chr2g0302061 77.922 77 13 3 1 76 1 74 3.16e-36 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395750 AT1G48330.1 65.152 66 20 3 1 63 1 66 1.32e-23 85.1
Msa1395750 AT3G17580.1 60.274 73 17 4 1 63 1 71 3.42e-21 79.3

Find 55 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAGAAGCCATTTGGTTT+TGG 0.252906 tig0021965:-6521 None:intergenic
GTGCTTATGTCCAGTCCTTT+AGG 0.254502 tig0021965:+6261 Msa1395750:five_prime_UTR
GATAAGAGAAGTCAATAAAA+AGG 0.255616 tig0021965:+6296 Msa1395750:five_prime_UTR
ACACTCTGTGGCTGTGGATT+TGG 0.258834 tig0021965:-6998 None:intergenic
TGCATCAAATATCTTGAATA+TGG 0.276681 tig0021965:+7125 Msa1395750:three_prime_UTR
AAACCTGTTTGAGACTTCTT+AGG 0.295118 tig0021965:-6612 None:intergenic
ACCAAAACCAAATGGCTTCT+TGG 0.316100 tig0021965:+6520 Msa1395750:exon
GTCAAAATGTTAGTACTTGT+TGG 0.336762 tig0021965:+7253 Msa1395750:three_prime_UTR
TTCTTAGGATCCCTTGTTGT+TGG 0.351825 tig0021965:-6597 None:intergenic
TTATATAATATATATTATAT+AGG 0.357294 tig0021965:-6420 None:intergenic
TTTATATGCTAATTATGTTA+AGG 0.395528 tig0021965:+7092 Msa1395750:three_prime_UTR
AGAACAAGAGAGGCGTATAA+TGG 0.401789 tig0021965:+6906 Msa1395750:intron
TCAAAATGTTAGTACTTGTT+GGG 0.424308 tig0021965:+7254 Msa1395750:three_prime_UTR
TACATTCATTTGCAAAGATA+AGG 0.427064 tig0021965:+6456 Msa1395750:five_prime_UTR
ACATTCGCTAATTTATGCAC+TGG 0.461046 tig0021965:-7066 None:intergenic
TGCAAATGAATGTATTCTCT+AGG 0.462994 tig0021965:-6447 None:intergenic
TTATGCACTGGGACTTCAAA+GGG 0.464235 tig0021965:-7054 None:intergenic
CATTCGCTAATTTATGCACT+GGG 0.478527 tig0021965:-7065 None:intergenic
GCAAATGAATGTATTCTCTA+GGG 0.489660 tig0021965:-6446 None:intergenic
TATGTTACACTCTGTGGCTG+TGG 0.492905 tig0021965:-7004 None:intergenic
GATCCTAAGAAGTCTCAAAC+AGG 0.499805 tig0021965:+6609 Msa1395750:CDS
ATGGTATGAATGTAATGTAA+TGG 0.502131 tig0021965:+7144 Msa1395750:three_prime_UTR
TCAAGTTATGTGGTCAATGC+TGG 0.502431 tig0021965:+6969 Msa1395750:CDS
ATCTCTCTCATCAAACCTAA+AGG 0.510453 tig0021965:-6276 None:intergenic
GTCAATCAACCAAAACCAAA+TGG 0.522048 tig0021965:+6512 Msa1395750:exon
TGATATTCTTTCACCAATCA+CGG 0.527224 tig0021965:-7282 None:intergenic
TTGTTGGGAATCCCCGTGAT+TGG 0.536042 tig0021965:+7269 Msa1395750:three_prime_UTR
GATATTCTTTCACCAATCAC+GGG 0.538061 tig0021965:-7281 None:intergenic
ATGAAGATGTTCAAGTTATG+TGG 0.553111 tig0021965:+6959 Msa1395750:CDS
TCTCATCAAACCTAAAGGAC+TGG 0.554967 tig0021965:-6271 None:intergenic
CAAACACAAACACAGAGAGA+AGG 0.559898 tig0021965:-6374 None:intergenic
GGATCTGCAAGGTGAAGTAA+TGG 0.564236 tig0021965:+6927 Msa1395750:CDS
TTTATGCACTGGGACTTCAA+AGG 0.569375 tig0021965:-7055 None:intergenic
TTATGTGGTCAATGCTGGAT+AGG 0.570689 tig0021965:+6974 Msa1395750:CDS
GAGGAGGTTAAGATTGTGGA+AGG 0.573477 tig0021965:-6328 None:intergenic
GTGAGAGGAGGTTAAGATTG+TGG 0.574082 tig0021965:-6332 None:intergenic
ACACAGAGAGAAGGAAAGAG+AGG 0.582028 tig0021965:-6365 None:intergenic
TACTTATTGAACCGTCAAAG+AGG 0.594531 tig0021965:-7349 None:intergenic
TATTGTTTACAGAACAAGAG+AGG 0.616356 tig0021965:+6896 Msa1395750:intron
GGAGCAAGATCCGTGAGAGG+AGG 0.622856 tig0021965:-6344 None:intergenic
GTATAGAGAAGCATATTCAA+AGG 0.628569 tig0021965:+6478 Msa1395750:five_prime_UTR
ACAATCTTAACCTCCTCTCA+CGG 0.630484 tig0021965:+6334 Msa1395750:five_prime_UTR
TTGATGAAGAATTAAGGTGG+CGG 0.631704 tig0021965:+7207 Msa1395750:three_prime_UTR
TTAAAGAACAACCAACAACA+AGG 0.633465 tig0021965:+6586 Msa1395750:CDS
TGAAGTTATGTTACACTCTG+TGG 0.635521 tig0021965:-7010 None:intergenic
AGAGGAGCAAGATCCGTGAG+AGG 0.636674 tig0021965:-6347 None:intergenic
CAAGGTGAAGTAATGGCATG+TGG 0.637142 tig0021965:+6934 Msa1395750:CDS
TCTTTGATGAAGAATTAAGG+TGG 0.646435 tig0021965:+7204 Msa1395750:three_prime_UTR
ATGTAAAAGAACCAAACACA+AGG 0.662731 tig0021965:-7386 None:intergenic
TAAAGAACAACCAACAACAA+GGG 0.675428 tig0021965:+6587 Msa1395750:CDS
AGGCGTATAATGGATCTGCA+AGG 0.696517 tig0021965:+6916 Msa1395750:CDS
ATATTCTTTCACCAATCACG+GGG 0.713644 tig0021965:-7280 None:intergenic
TGATTGGTGAAAGAATATCA+TGG 0.714774 tig0021965:+7285 Msa1395750:three_prime_UTR
TGTAAAAGAACCAAACACAA+GGG 0.715508 tig0021965:-7385 None:intergenic
AAGGTGAAGTAATGGCATGT+GGG 0.724189 tig0021965:+6935 Msa1395750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAATATATATTATAT+AGG - tig0021965:6423-6442 None:intergenic 0.0%
!! TTATATAATATATATTATAT+AGG - tig0021965:6423-6442 None:intergenic 0.0%
!!! AAGTACAATTTTAAATTATA+AGG - tig0021965:6790-6809 None:intergenic 10.0%
!!! GTACTTTTATTTATTTTTTA+CGG + tig0021965:6804-6823 Msa1395750:intron 10.0%
!!! AAGTACAATTTTAAATTATA+AGG - tig0021965:6790-6809 None:intergenic 10.0%
!!! GTACTTTTATTTATTTTTTA+CGG + tig0021965:6804-6823 Msa1395750:intron 10.0%
!!! TTATTCAAATAGTATTTTGT+CGG + tig0021965:6744-6763 Msa1395750:intron 15.0%
!! AAAAAATGAGTTAAATAATG+TGG - tig0021965:6876-6895 None:intergenic 15.0%
!! TTTATATGCTAATTATGTTA+AGG + tig0021965:7092-7111 Msa1395750:three_prime_UTR 15.0%
!!! TTATTCAAATAGTATTTTGT+CGG + tig0021965:6744-6763 Msa1395750:intron 15.0%
!! AAAAAATGAGTTAAATAATG+TGG - tig0021965:6876-6895 None:intergenic 15.0%
!! TTTATATGCTAATTATGTTA+AGG + tig0021965:7092-7111 Msa1395750:three_prime_UTR 15.0%
!!! AAATGAAGATTTAAGATTGT+GGG - tig0021965:6649-6668 None:intergenic 20.0%
!!! ATTGAAAGTACAATTTCTTT+TGG - tig0021965:6852-6871 None:intergenic 20.0%
!! TTCATCAAAGAAAAAAAAAG+GGG - tig0021965:7195-7214 None:intergenic 20.0%
!! CTTCATCAAAGAAAAAAAAA+GGG - tig0021965:7196-7215 None:intergenic 20.0%
!! TCTTCATCAAAGAAAAAAAA+AGG - tig0021965:7197-7216 None:intergenic 20.0%
!!! TTTTCTTTGATGAAGAATTA+AGG + tig0021965:7201-7220 Msa1395750:three_prime_UTR 20.0%
!!! GTGAGATTTTTTTTAATGAA+AGG + tig0021965:7307-7326 Msa1395750:three_prime_UTR 20.0%
!!! AAATGAAGATTTAAGATTGT+GGG - tig0021965:6649-6668 None:intergenic 20.0%
!!! ATTGAAAGTACAATTTCTTT+TGG - tig0021965:6852-6871 None:intergenic 20.0%
!! TTCATCAAAGAAAAAAAAAG+GGG - tig0021965:7195-7214 None:intergenic 20.0%
!! CTTCATCAAAGAAAAAAAAA+GGG - tig0021965:7196-7215 None:intergenic 20.0%
!! TCTTCATCAAAGAAAAAAAA+AGG - tig0021965:7197-7216 None:intergenic 20.0%
!!! TTTTCTTTGATGAAGAATTA+AGG + tig0021965:7201-7220 Msa1395750:three_prime_UTR 20.0%
!!! GTGAGATTTTTTTTAATGAA+AGG + tig0021965:7307-7326 Msa1395750:three_prime_UTR 20.0%
! GATAAGAGAAGTCAATAAAA+AGG + tig0021965:6296-6315 Msa1395750:five_prime_UTR 25.0%
! TACATTCATTTGCAAAGATA+AGG + tig0021965:6456-6475 Msa1395750:five_prime_UTR 25.0%
!!! AAAGTACAAGCTTTTTTGAA+TGG - tig0021965:6564-6583 None:intergenic 25.0%
!! GAAATGAAGATTTAAGATTG+TGG - tig0021965:6650-6669 None:intergenic 25.0%
! TGCATCAAATATCTTGAATA+TGG + tig0021965:7125-7144 Msa1395750:three_prime_UTR 25.0%
! ATGGTATGAATGTAATGTAA+TGG + tig0021965:7144-7163 Msa1395750:three_prime_UTR 25.0%
! TCAAAATGTTAGTACTTGTT+GGG + tig0021965:7254-7273 Msa1395750:three_prime_UTR 25.0%
! GATAAGAGAAGTCAATAAAA+AGG + tig0021965:6296-6315 Msa1395750:five_prime_UTR 25.0%
! TACATTCATTTGCAAAGATA+AGG + tig0021965:6456-6475 Msa1395750:five_prime_UTR 25.0%
!!! AAAGTACAAGCTTTTTTGAA+TGG - tig0021965:6564-6583 None:intergenic 25.0%
!! GAAATGAAGATTTAAGATTG+TGG - tig0021965:6650-6669 None:intergenic 25.0%
! TGCATCAAATATCTTGAATA+TGG + tig0021965:7125-7144 Msa1395750:three_prime_UTR 25.0%
! ATGGTATGAATGTAATGTAA+TGG + tig0021965:7144-7163 Msa1395750:three_prime_UTR 25.0%
! TCAAAATGTTAGTACTTGTT+GGG + tig0021965:7254-7273 Msa1395750:three_prime_UTR 25.0%
GCAAATGAATGTATTCTCTA+GGG - tig0021965:6449-6468 None:intergenic 30.0%
TGCAAATGAATGTATTCTCT+AGG - tig0021965:6450-6469 None:intergenic 30.0%
! GTATAGAGAAGCATATTCAA+AGG + tig0021965:6478-6497 Msa1395750:five_prime_UTR 30.0%
TTAAAGAACAACCAACAACA+AGG + tig0021965:6586-6605 Msa1395750:CDS 30.0%
TAAAGAACAACCAACAACAA+GGG + tig0021965:6587-6606 Msa1395750:CDS 30.0%
TATTGTTTACAGAACAAGAG+AGG + tig0021965:6896-6915 Msa1395750:intron 30.0%
! ATGAAGATGTTCAAGTTATG+TGG + tig0021965:6959-6978 Msa1395750:CDS 30.0%
TCTTTGATGAAGAATTAAGG+TGG + tig0021965:7204-7223 Msa1395750:three_prime_UTR 30.0%
GTCAAAATGTTAGTACTTGT+TGG + tig0021965:7253-7272 Msa1395750:three_prime_UTR 30.0%
TGATATTCTTTCACCAATCA+CGG - tig0021965:7285-7304 None:intergenic 30.0%
TGATTGGTGAAAGAATATCA+TGG + tig0021965:7285-7304 Msa1395750:three_prime_UTR 30.0%
! TACAATTTTACCCTTGTGTT+TGG + tig0021965:7375-7394 Msa1395750:three_prime_UTR 30.0%
TGTAAAAGAACCAAACACAA+GGG - tig0021965:7388-7407 None:intergenic 30.0%
GCAAATGAATGTATTCTCTA+GGG - tig0021965:6449-6468 None:intergenic 30.0%
TGCAAATGAATGTATTCTCT+AGG - tig0021965:6450-6469 None:intergenic 30.0%
! GTATAGAGAAGCATATTCAA+AGG + tig0021965:6478-6497 Msa1395750:five_prime_UTR 30.0%
TTAAAGAACAACCAACAACA+AGG + tig0021965:6586-6605 Msa1395750:CDS 30.0%
TAAAGAACAACCAACAACAA+GGG + tig0021965:6587-6606 Msa1395750:CDS 30.0%
TATTGTTTACAGAACAAGAG+AGG + tig0021965:6896-6915 Msa1395750:intron 30.0%
! ATGAAGATGTTCAAGTTATG+TGG + tig0021965:6959-6978 Msa1395750:CDS 30.0%
TCTTTGATGAAGAATTAAGG+TGG + tig0021965:7204-7223 Msa1395750:three_prime_UTR 30.0%
GTCAAAATGTTAGTACTTGT+TGG + tig0021965:7253-7272 Msa1395750:three_prime_UTR 30.0%
TGATATTCTTTCACCAATCA+CGG - tig0021965:7285-7304 None:intergenic 30.0%
TGATTGGTGAAAGAATATCA+TGG + tig0021965:7285-7304 Msa1395750:three_prime_UTR 30.0%
! TACAATTTTACCCTTGTGTT+TGG + tig0021965:7375-7394 Msa1395750:three_prime_UTR 30.0%
TGTAAAAGAACCAAACACAA+GGG - tig0021965:7388-7407 None:intergenic 30.0%
ATCTCTCTCATCAAACCTAA+AGG - tig0021965:6279-6298 None:intergenic 35.0%
GTCAATCAACCAAAACCAAA+TGG + tig0021965:6512-6531 Msa1395750:exon 35.0%
! TTTTCTTCCAAGAAGCCATT+TGG - tig0021965:6530-6549 None:intergenic 35.0%
!!! TTTTTTGAATGGTGTTGCGA+TGG - tig0021965:6553-6572 None:intergenic 35.0%
! AAACCTGTTTGAGACTTCTT+AGG - tig0021965:6615-6634 None:intergenic 35.0%
TGAAGTTATGTTACACTCTG+TGG - tig0021965:7013-7032 None:intergenic 35.0%
CATTCGCTAATTTATGCACT+GGG - tig0021965:7068-7087 None:intergenic 35.0%
ACATTCGCTAATTTATGCAC+TGG - tig0021965:7069-7088 None:intergenic 35.0%
TTGATGAAGAATTAAGGTGG+CGG + tig0021965:7207-7226 Msa1395750:three_prime_UTR 35.0%
ATATTCTTTCACCAATCACG+GGG - tig0021965:7283-7302 None:intergenic 35.0%
GATATTCTTTCACCAATCAC+GGG - tig0021965:7284-7303 None:intergenic 35.0%
TACTTATTGAACCGTCAAAG+AGG - tig0021965:7352-7371 None:intergenic 35.0%
ATCTCTCTCATCAAACCTAA+AGG - tig0021965:6279-6298 None:intergenic 35.0%
GTCAATCAACCAAAACCAAA+TGG + tig0021965:6512-6531 Msa1395750:exon 35.0%
! TTTTCTTCCAAGAAGCCATT+TGG - tig0021965:6530-6549 None:intergenic 35.0%
!!! TTTTTTGAATGGTGTTGCGA+TGG - tig0021965:6553-6572 None:intergenic 35.0%
! AAACCTGTTTGAGACTTCTT+AGG - tig0021965:6615-6634 None:intergenic 35.0%
TGAAGTTATGTTACACTCTG+TGG - tig0021965:7013-7032 None:intergenic 35.0%
CATTCGCTAATTTATGCACT+GGG - tig0021965:7068-7087 None:intergenic 35.0%
ACATTCGCTAATTTATGCAC+TGG - tig0021965:7069-7088 None:intergenic 35.0%
TTGATGAAGAATTAAGGTGG+CGG + tig0021965:7207-7226 Msa1395750:three_prime_UTR 35.0%
ATATTCTTTCACCAATCACG+GGG - tig0021965:7283-7302 None:intergenic 35.0%
GATATTCTTTCACCAATCAC+GGG - tig0021965:7284-7303 None:intergenic 35.0%
TACTTATTGAACCGTCAAAG+AGG - tig0021965:7352-7371 None:intergenic 35.0%
TCTCATCAAACCTAAAGGAC+TGG - tig0021965:6274-6293 None:intergenic 40.0%
ACAATCTTAACCTCCTCTCA+CGG + tig0021965:6334-6353 Msa1395750:five_prime_UTR 40.0%
CAAACACAAACACAGAGAGA+AGG - tig0021965:6377-6396 None:intergenic 40.0%
ACCAAAACCAAATGGCTTCT+TGG + tig0021965:6520-6539 Msa1395750:exon 40.0%
!! TCCAAGAAGCCATTTGGTTT+TGG - tig0021965:6524-6543 None:intergenic 40.0%
! TTCTTAGGATCCCTTGTTGT+TGG - tig0021965:6600-6619 None:intergenic 40.0%
GATCCTAAGAAGTCTCAAAC+AGG + tig0021965:6609-6628 Msa1395750:CDS 40.0%
! AGAACAAGAGAGGCGTATAA+TGG + tig0021965:6906-6925 Msa1395750:intron 40.0%
AAGGTGAAGTAATGGCATGT+GGG + tig0021965:6935-6954 Msa1395750:CDS 40.0%
TCAAGTTATGTGGTCAATGC+TGG + tig0021965:6969-6988 Msa1395750:CDS 40.0%
TTATGTGGTCAATGCTGGAT+AGG + tig0021965:6974-6993 Msa1395750:CDS 40.0%
TTATGCACTGGGACTTCAAA+GGG - tig0021965:7057-7076 None:intergenic 40.0%
TTTATGCACTGGGACTTCAA+AGG - tig0021965:7058-7077 None:intergenic 40.0%
!!! TTAAGGTGGCGGTTTTAGTT+TGG + tig0021965:7218-7237 Msa1395750:three_prime_UTR 40.0%
! GTGTCTGTTTTCCTCTTTGA+CGG + tig0021965:7338-7357 Msa1395750:three_prime_UTR 40.0%
TCTCATCAAACCTAAAGGAC+TGG - tig0021965:6274-6293 None:intergenic 40.0%
ACAATCTTAACCTCCTCTCA+CGG + tig0021965:6334-6353 Msa1395750:five_prime_UTR 40.0%
CAAACACAAACACAGAGAGA+AGG - tig0021965:6377-6396 None:intergenic 40.0%
ACCAAAACCAAATGGCTTCT+TGG + tig0021965:6520-6539 Msa1395750:exon 40.0%
!! TCCAAGAAGCCATTTGGTTT+TGG - tig0021965:6524-6543 None:intergenic 40.0%
! TTCTTAGGATCCCTTGTTGT+TGG - tig0021965:6600-6619 None:intergenic 40.0%
GATCCTAAGAAGTCTCAAAC+AGG + tig0021965:6609-6628 Msa1395750:CDS 40.0%
! AGAACAAGAGAGGCGTATAA+TGG + tig0021965:6906-6925 Msa1395750:intron 40.0%
AAGGTGAAGTAATGGCATGT+GGG + tig0021965:6935-6954 Msa1395750:CDS 40.0%
TCAAGTTATGTGGTCAATGC+TGG + tig0021965:6969-6988 Msa1395750:CDS 40.0%
TTATGTGGTCAATGCTGGAT+AGG + tig0021965:6974-6993 Msa1395750:CDS 40.0%
TTATGCACTGGGACTTCAAA+GGG - tig0021965:7057-7076 None:intergenic 40.0%
TTTATGCACTGGGACTTCAA+AGG - tig0021965:7058-7077 None:intergenic 40.0%
!!! TTAAGGTGGCGGTTTTAGTT+TGG + tig0021965:7218-7237 Msa1395750:three_prime_UTR 40.0%
! GTGTCTGTTTTCCTCTTTGA+CGG + tig0021965:7338-7357 Msa1395750:three_prime_UTR 40.0%
GTGCTTATGTCCAGTCCTTT+AGG + tig0021965:6261-6280 Msa1395750:five_prime_UTR 45.0%
GAGGAGGTTAAGATTGTGGA+AGG - tig0021965:6331-6350 None:intergenic 45.0%
GTGAGAGGAGGTTAAGATTG+TGG - tig0021965:6335-6354 None:intergenic 45.0%
ACACAGAGAGAAGGAAAGAG+AGG - tig0021965:6368-6387 None:intergenic 45.0%
!! AGGCGTATAATGGATCTGCA+AGG + tig0021965:6916-6935 Msa1395750:CDS 45.0%
GGATCTGCAAGGTGAAGTAA+TGG + tig0021965:6927-6946 Msa1395750:CDS 45.0%
CAAGGTGAAGTAATGGCATG+TGG + tig0021965:6934-6953 Msa1395750:CDS 45.0%
TATGTTACACTCTGTGGCTG+TGG - tig0021965:7007-7026 None:intergenic 45.0%
GTGCTTATGTCCAGTCCTTT+AGG + tig0021965:6261-6280 Msa1395750:five_prime_UTR 45.0%
GAGGAGGTTAAGATTGTGGA+AGG - tig0021965:6331-6350 None:intergenic 45.0%
GTGAGAGGAGGTTAAGATTG+TGG - tig0021965:6335-6354 None:intergenic 45.0%
ACACAGAGAGAAGGAAAGAG+AGG - tig0021965:6368-6387 None:intergenic 45.0%
!! AGGCGTATAATGGATCTGCA+AGG + tig0021965:6916-6935 Msa1395750:CDS 45.0%
GGATCTGCAAGGTGAAGTAA+TGG + tig0021965:6927-6946 Msa1395750:CDS 45.0%
CAAGGTGAAGTAATGGCATG+TGG + tig0021965:6934-6953 Msa1395750:CDS 45.0%
TATGTTACACTCTGTGGCTG+TGG - tig0021965:7007-7026 None:intergenic 45.0%
ACACTCTGTGGCTGTGGATT+TGG - tig0021965:7001-7020 None:intergenic 50.0%
TTGTTGGGAATCCCCGTGAT+TGG + tig0021965:7269-7288 Msa1395750:three_prime_UTR 50.0%
ACACTCTGTGGCTGTGGATT+TGG - tig0021965:7001-7020 None:intergenic 50.0%
TTGTTGGGAATCCCCGTGAT+TGG + tig0021965:7269-7288 Msa1395750:three_prime_UTR 50.0%
AGAGGAGCAAGATCCGTGAG+AGG - tig0021965:6350-6369 None:intergenic 55.0%
AGAGGAGCAAGATCCGTGAG+AGG - tig0021965:6350-6369 None:intergenic 55.0%
GGAGCAAGATCCGTGAGAGG+AGG - tig0021965:6347-6366 None:intergenic 60.0%
GGAGCAAGATCCGTGAGAGG+AGG - tig0021965:6347-6366 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0021965 gene 6247 7407 6247 ID=Msa1395750;Name=Msa1395750
tig0021965 mRNA 6247 7407 6247 ID=Msa1395750-mRNA-1;Parent=Msa1395750;Name=Msa1395750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=284|1|1|1|1|1|2|366|77
tig0021965 exon 6247 6630 6247 ID=Msa1395750-mRNA-1:exon:15046;Parent=Msa1395750-mRNA-1
tig0021965 exon 6908 7407 6908 ID=Msa1395750-mRNA-1:exon:15047;Parent=Msa1395750-mRNA-1
tig0021965 five_prime_UTR 6247 6530 6247 ID=Msa1395750-mRNA-1:five_prime_utr;Parent=Msa1395750-mRNA-1
tig0021965 CDS 6531 6630 6531 ID=Msa1395750-mRNA-1:cds;Parent=Msa1395750-mRNA-1
tig0021965 CDS 6908 7041 6908 ID=Msa1395750-mRNA-1:cds;Parent=Msa1395750-mRNA-1
tig0021965 three_prime_UTR 7042 7407 7042 ID=Msa1395750-mRNA-1:three_prime_utr;Parent=Msa1395750-mRNA-1
Gene Sequence

>Msa1395750

ATGGCTTCTTGGAAGAAAACCATCGCAACACCATTCAAAAAAGCTTGTACTTTCTTTAAAGAACAACCAACAACAAGGGATCCTAAGAAGTCTCAAACAGAACAAGAGAGGCGTATAATGGATCTGCAAGGTGAAGTAATGGCATGTGGGTATGAAGATGTTCAAGTTATGTGGTCAATGCTGGATAGGTCCAAATCCACAGCCACAGAGTGTAACATAACTTCATCAAGTTGA
Protein sequence

>Msa1395750

MASWKKTIATPFKKACTFFKEQPTTRDPKKSQTEQERRIMDLQGEVMACGYEDVQVMWSMLDRSKSTATECNITSSS*