Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1288530 | XP_021604790.1 | 46.067 | 89 | 47 | 1 | 16 | 104 | 142 | 229 | 5.61e-12 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1288530 | A0A2C9WE08 | 46.067 | 89 | 47 | 1 | 16 | 104 | 142 | 229 | 2.68e-12 | 73.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0672370 | Msa1288530 | 0.840090 | 1.071798e-57 | -8.615850e-47 |
| Msa1247750 | Msa1288530 | 0.802138 | 6.467611e-49 | -8.615850e-47 |
| Msa1252370 | Msa1288530 | 0.939185 | 1.942672e-99 | -8.615850e-47 |
| Msa1288530 | Msa1288550 | 0.816647 | 4.965529e-52 | -8.615850e-47 |
| Msa1288530 | Msa1356370 | 0.893805 | 4.465352e-75 | -8.615850e-47 |
| Msa0388850 | Msa1288530 | 0.931255 | 4.945285e-94 | -8.615850e-47 |
| Msa0281030 | Msa1288530 | 0.931645 | 2.781034e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1288530 | MtrunA17_Chr5g0441571 | 46.067 | 89 | 47 | 1 | 16 | 104 | 141 | 228 | 2.06e-15 | 71.6 |
| Msa1288530 | MtrunA17_Chr5g0441651 | 43.820 | 89 | 49 | 1 | 16 | 104 | 149 | 236 | 9.27e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGAAGCAAAGGAAATTA+AGG | 0.221632 | 8_3:-41508763 | Msa1288530:intron |
| AATTAAGCTTTCTTTGAATA+AGG | 0.238635 | 8_3:+41508618 | None:intergenic |
| AGAAAGCTTAATTGAAAGTA+TGG | 0.246651 | 8_3:-41508608 | Msa1288530:CDS |
| TGGCTGTTTCTTCTTGTGAT+TGG | 0.286704 | 8_3:-41506944 | Msa1288530:CDS |
| ATTTCCTTTGCTTCTAAAAT+CGG | 0.330480 | 8_3:+41508768 | None:intergenic |
| GAGGAAGAAACAAGAAGAAT+TGG | 0.332205 | 8_3:-41508567 | Msa1288530:CDS |
| TAATTGAAAGTATGGGGTTT+GGG | 0.345729 | 8_3:-41508600 | Msa1288530:CDS |
| ATGGGGTTTGGGTTTGCAAT+TGG | 0.350878 | 8_3:-41508589 | Msa1288530:CDS |
| ATCTAAATTCTAAAGCATTA+TGG | 0.352054 | 8_3:+41506898 | None:intergenic |
| TTAATTGAAAGTATGGGGTT+TGG | 0.364955 | 8_3:-41508601 | Msa1288530:CDS |
| AGAAGAGAGAAGAGAGAAAA+GGG | 0.376057 | 8_3:-41508935 | Msa1288530:five_prime_UTR |
| ACGAAGGGACCGAGAGAAAC+AGG | 0.383319 | 8_3:-41508892 | Msa1288530:five_prime_UTR |
| CGTCTATGTTTCTTAATCTC+AGG | 0.392267 | 8_3:-41507685 | Msa1288530:CDS |
| GAGAAGAGAGAAGAGAGAAA+AGG | 0.435926 | 8_3:-41508936 | Msa1288530:five_prime_UTR |
| AAATTGCATGTCGTTAGAAA+AGG | 0.441642 | 8_3:-41508961 | Msa1288530:five_prime_UTR |
| TCTCCCGTTCCTGTTTCTCT+CGG | 0.447250 | 8_3:+41508883 | None:intergenic |
| GAAAGCTTAATTGAAAGTAT+GGG | 0.452862 | 8_3:-41508607 | Msa1288530:CDS |
| GGGTTTGGGTTTGCAATTGG+AGG | 0.457079 | 8_3:-41508586 | Msa1288530:CDS |
| ACAGGAACGGGAGAGGAAGA+AGG | 0.470342 | 8_3:-41508874 | Msa1288530:five_prime_UTR |
| AGAGAAACGGGAGAGGAAGA+AGG | 0.475515 | 8_3:-41509013 | Msa1288530:five_prime_UTR |
| TTTAAGAAGCGCAAGTCTCT+TGG | 0.484148 | 8_3:-41507589 | Msa1288530:CDS |
| AGAGAGAACGGAAGAGGAGA+GGG | 0.484152 | 8_3:-41508845 | Msa1288530:five_prime_UTR |
| GAAGAAACAAGAAGAATTGG+AGG | 0.484939 | 8_3:-41508564 | Msa1288530:intron |
| GGGGACGAGAGAAACGGGAG+AGG | 0.500968 | 8_3:-41509020 | Msa1288530:five_prime_UTR |
| GGACCGAGAGAAACAGGAAC+GGG | 0.505385 | 8_3:-41508886 | Msa1288530:five_prime_UTR |
| GCGACGAGAGAGAACGGAAG+AGG | 0.507684 | 8_3:-41508851 | Msa1288530:five_prime_UTR |
| GAGAGAAACAGGAACGGGAG+AGG | 0.518708 | 8_3:-41508881 | Msa1288530:five_prime_UTR |
| AGAAGGGCGACGAGAGAGAA+CGG | 0.522224 | 8_3:-41508857 | Msa1288530:five_prime_UTR |
| CAGGAACGGGAGAGGAAGAA+GGG | 0.522491 | 8_3:-41508873 | Msa1288530:five_prime_UTR |
| AAGGGAACGAGAGAAAGAAG+AGG | 0.523683 | 8_3:-41508917 | Msa1288530:five_prime_UTR |
| AATTGCATGTCGTTAGAAAA+GGG | 0.524800 | 8_3:-41508960 | Msa1288530:five_prime_UTR |
| GAGAAACGGGAGAGGAAGAA+GGG | 0.529600 | 8_3:-41509012 | Msa1288530:five_prime_UTR |
| GAGAGAGAACGGAAGAGGAG+AGG | 0.532551 | 8_3:-41508846 | Msa1288530:five_prime_UTR |
| ATCGGTGCAGATCAGAGTGT+TGG | 0.543077 | 8_3:+41508786 | None:intergenic |
| AAAGCTTAATTGAAAGTATG+GGG | 0.546070 | 8_3:-41508606 | Msa1288530:CDS |
| CAACATTGAAGATTATGAAG+AGG | 0.549840 | 8_3:-41507860 | Msa1288530:CDS |
| GTGTTGGACGGCGAGGTCGA+CGG | 0.559179 | 8_3:+41508802 | None:intergenic |
| GTCTCTTGGTGCCTTAGCGA+TGG | 0.562521 | 8_3:-41507575 | Msa1288530:intron |
| AGAGAAAGAAGAGGGAACGA+AGG | 0.563011 | 8_3:-41508908 | Msa1288530:five_prime_UTR |
| TTATGAAGAGGATTTGAAGC+CGG | 0.569826 | 8_3:-41507848 | Msa1288530:intron |
| GAGAAAGAAGAGGGAACGAA+GGG | 0.574865 | 8_3:-41508907 | Msa1288530:five_prime_UTR |
| AATTAAGTTCAGAGGAGTAG+AGG | 0.591705 | 8_3:-41507896 | Msa1288530:CDS |
| AAACGGGAGAGGAAGAAGGG+TGG | 0.593784 | 8_3:-41509009 | Msa1288530:five_prime_UTR |
| AGAGCTGCAATTAAGTTCAG+AGG | 0.598621 | 8_3:-41507904 | Msa1288530:CDS |
| AGGGAACGAGAGAAAGAAGA+GGG | 0.605408 | 8_3:-41508916 | Msa1288530:five_prime_UTR |
| GGGACCGAGAGAAACAGGAA+CGG | 0.630598 | 8_3:-41508887 | Msa1288530:five_prime_UTR |
| GATCAGAGTGTTGGACGGCG+AGG | 0.636768 | 8_3:+41508795 | None:intergenic |
| TTGGACGGCGAGGTCGACGG+CGG | 0.673722 | 8_3:+41508805 | None:intergenic |
| GTGCAGATCAGAGTGTTGGA+CGG | 0.676123 | 8_3:+41508790 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTAATATTTATGATGT+TGG | - | chr8_3:41508699-41508718 | Msa1288530:intron | 10.0% |
| !! | ATATTTAATATTTATGATGT+TGG | - | chr8_3:41508699-41508718 | Msa1288530:intron | 10.0% |
| !! | AAATTGAATGTATAAATTGT+AGG | - | chr8_3:41507738-41507757 | Msa1288530:intron | 15.0% |
| !! | AATTGAATGTATAAATTGTA+GGG | - | chr8_3:41507739-41507758 | Msa1288530:intron | 15.0% |
| !! | AAAAATATTCTCAACATTAA+AGG | + | chr8_3:41507831-41507850 | None:intergenic | 15.0% |
| !!! | TAATGTTGAGAATATTTTTT+CGG | - | chr8_3:41507832-41507851 | Msa1288530:intron | 15.0% |
| !!! | AAATTTCATTCATTCTTTTA+TGG | - | chr8_3:41507919-41507938 | Msa1288530:intron | 15.0% |
| !! | AATAATTGATTGAAAACTAT+AGG | + | chr8_3:41508143-41508162 | None:intergenic | 15.0% |
| !! | TAAAAAATTTACACTTTAGT+AGG | + | chr8_3:41508842-41508861 | None:intergenic | 15.0% |
| !! | AAATTGAATGTATAAATTGT+AGG | - | chr8_3:41507738-41507757 | Msa1288530:intron | 15.0% |
| !! | AATTGAATGTATAAATTGTA+GGG | - | chr8_3:41507739-41507758 | Msa1288530:intron | 15.0% |
| !! | AAAAATATTCTCAACATTAA+AGG | + | chr8_3:41507831-41507850 | None:intergenic | 15.0% |
| !!! | TAATGTTGAGAATATTTTTT+CGG | - | chr8_3:41507832-41507851 | Msa1288530:intron | 15.0% |
| !!! | AAATTTCATTCATTCTTTTA+TGG | - | chr8_3:41507919-41507938 | Msa1288530:intron | 15.0% |
| !! | AATAATTGATTGAAAACTAT+AGG | + | chr8_3:41508143-41508162 | None:intergenic | 15.0% |
| !! | TAAAAAATTTACACTTTAGT+AGG | + | chr8_3:41508842-41508861 | None:intergenic | 15.0% |
| !! | TTCATTGAGAAATTGAAATT+GGG | + | chr8_3:41507246-41507265 | None:intergenic | 20.0% |
| !! | AATTTCAATTTCTCAATGAA+GGG | - | chr8_3:41507246-41507265 | Msa1288530:intron | 20.0% |
| !! | AATTAAGCTTTCTTTGAATA+AGG | + | chr8_3:41507299-41507318 | None:intergenic | 20.0% |
| !!! | TGTAATTGTTTTATGATGAA+TGG | - | chr8_3:41507777-41507796 | Msa1288530:intron | 20.0% |
| !!! | AATGTTGAGAATATTTTTTC+GGG | - | chr8_3:41507833-41507852 | Msa1288530:intron | 20.0% |
| !! | CAATTCAAGATACAAAAAAA+AGG | + | chr8_3:41508167-41508186 | None:intergenic | 20.0% |
| !!! | AATTTTAACTTCAATGTGAA+TGG | - | chr8_3:41508548-41508567 | Msa1288530:intron | 20.0% |
| !! | ATCAATTGAAGTCAATAATT+TGG | + | chr8_3:41508881-41508900 | None:intergenic | 20.0% |
| !!! | ATCTAAATTCTAAAGCATTA+TGG | + | chr8_3:41509019-41509038 | None:intergenic | 20.0% |
| !! | TTCATTGAGAAATTGAAATT+GGG | + | chr8_3:41507246-41507265 | None:intergenic | 20.0% |
| !! | AATTTCAATTTCTCAATGAA+GGG | - | chr8_3:41507246-41507265 | Msa1288530:intron | 20.0% |
| !! | AATTAAGCTTTCTTTGAATA+AGG | + | chr8_3:41507299-41507318 | None:intergenic | 20.0% |
| !!! | TGTAATTGTTTTATGATGAA+TGG | - | chr8_3:41507777-41507796 | Msa1288530:intron | 20.0% |
| !!! | AATGTTGAGAATATTTTTTC+GGG | - | chr8_3:41507833-41507852 | Msa1288530:intron | 20.0% |
| !! | CAATTCAAGATACAAAAAAA+AGG | + | chr8_3:41508167-41508186 | None:intergenic | 20.0% |
| !!! | AATTTTAACTTCAATGTGAA+TGG | - | chr8_3:41508548-41508567 | Msa1288530:intron | 20.0% |
| !! | ATCAATTGAAGTCAATAATT+TGG | + | chr8_3:41508881-41508900 | None:intergenic | 20.0% |
| !!! | ATCTAAATTCTAAAGCATTA+TGG | + | chr8_3:41509019-41509038 | None:intergenic | 20.0% |
| !!! | ATTTCCTTTGCTTCTAAAAT+CGG | + | chr8_3:41507149-41507168 | None:intergenic | 25.0% |
| ! | TTTAGAAGCAAAGGAAATTA+AGG | - | chr8_3:41507151-41507170 | Msa1288530:intron | 25.0% |
| ! | TCATTGAGAAATTGAAATTG+GGG | + | chr8_3:41507245-41507264 | None:intergenic | 25.0% |
| ! | CTTCATTGAGAAATTGAAAT+TGG | + | chr8_3:41507247-41507266 | None:intergenic | 25.0% |
| ! | CAATTTCAATTTCTCAATGA+AGG | - | chr8_3:41507245-41507264 | Msa1288530:intron | 25.0% |
| ! | AGAAAGCTTAATTGAAAGTA+TGG | - | chr8_3:41507306-41507325 | Msa1288530:intron | 25.0% |
| !! | GAAAGCTTAATTGAAAGTAT+GGG | - | chr8_3:41507307-41507326 | Msa1288530:intron | 25.0% |
| !! | AAAGCTTAATTGAAAGTATG+GGG | - | chr8_3:41507308-41507327 | Msa1288530:intron | 25.0% |
| ! | TGTAAATCATTTCTGTTTGA+TGG | - | chr8_3:41507391-41507410 | Msa1288530:intron | 25.0% |
| ! | TCTGTTTAAGAAGATACATA+GGG | - | chr8_3:41507440-41507459 | Msa1288530:intron | 25.0% |
| ! | AAATCAGATACAAAGGAAAA+TGG | + | chr8_3:41507527-41507546 | None:intergenic | 25.0% |
| !! | ATTTTCCTTTGTATCTGATT+TGG | - | chr8_3:41507526-41507545 | Msa1288530:intron | 25.0% |
| !! | TTTTACCAAATCAGATACAA+AGG | + | chr8_3:41507534-41507553 | None:intergenic | 25.0% |
| !! | AAAAAGCTATTTCACAATAC+TGG | + | chr8_3:41507562-41507581 | None:intergenic | 25.0% |
| ! | TATGATAATTTCATCCCATA+AGG | - | chr8_3:41507691-41507710 | Msa1288530:CDS | 25.0% |
| ! | TTACATAGAACATACCTTAT+GGG | + | chr8_3:41507708-41507727 | None:intergenic | 25.0% |
| ! | TTTACATAGAACATACCTTA+TGG | + | chr8_3:41507709-41507728 | None:intergenic | 25.0% |
| !! | TCTGAAAATCAATTTGTTTC+AGG | - | chr8_3:41507800-41507819 | Msa1288530:intron | 25.0% |
| !!! | ATGTTGAGAATATTTTTTCG+GGG | - | chr8_3:41507834-41507853 | Msa1288530:intron | 25.0% |
| ! | TGTTGTGATTTAAATGAGTT+TGG | - | chr8_3:41508185-41508204 | Msa1288530:intron | 25.0% |
| !! | TTATTCCAGTTTTTGTTACA+TGG | - | chr8_3:41508778-41508797 | Msa1288530:five_prime_UTR | 25.0% |
| ! | TATATCCATGTAACAAAAAC+TGG | + | chr8_3:41508786-41508805 | None:intergenic | 25.0% |
| !!! | AATGCTTTAGAATTTAGATG+AGG | - | chr8_3:41509020-41509039 | Msa1288530:five_prime_UTR | 25.0% |
| !!! | ATTTCCTTTGCTTCTAAAAT+CGG | + | chr8_3:41507149-41507168 | None:intergenic | 25.0% |
| ! | TTTAGAAGCAAAGGAAATTA+AGG | - | chr8_3:41507151-41507170 | Msa1288530:intron | 25.0% |
| ! | TCATTGAGAAATTGAAATTG+GGG | + | chr8_3:41507245-41507264 | None:intergenic | 25.0% |
| ! | CTTCATTGAGAAATTGAAAT+TGG | + | chr8_3:41507247-41507266 | None:intergenic | 25.0% |
| ! | CAATTTCAATTTCTCAATGA+AGG | - | chr8_3:41507245-41507264 | Msa1288530:intron | 25.0% |
| ! | AGAAAGCTTAATTGAAAGTA+TGG | - | chr8_3:41507306-41507325 | Msa1288530:intron | 25.0% |
| !! | GAAAGCTTAATTGAAAGTAT+GGG | - | chr8_3:41507307-41507326 | Msa1288530:intron | 25.0% |
| !! | AAAGCTTAATTGAAAGTATG+GGG | - | chr8_3:41507308-41507327 | Msa1288530:intron | 25.0% |
| ! | TGTAAATCATTTCTGTTTGA+TGG | - | chr8_3:41507391-41507410 | Msa1288530:intron | 25.0% |
| ! | TCTGTTTAAGAAGATACATA+GGG | - | chr8_3:41507440-41507459 | Msa1288530:intron | 25.0% |
| ! | AAATCAGATACAAAGGAAAA+TGG | + | chr8_3:41507527-41507546 | None:intergenic | 25.0% |
| !! | ATTTTCCTTTGTATCTGATT+TGG | - | chr8_3:41507526-41507545 | Msa1288530:intron | 25.0% |
| !! | TTTTACCAAATCAGATACAA+AGG | + | chr8_3:41507534-41507553 | None:intergenic | 25.0% |
| !! | AAAAAGCTATTTCACAATAC+TGG | + | chr8_3:41507562-41507581 | None:intergenic | 25.0% |
| ! | TATGATAATTTCATCCCATA+AGG | - | chr8_3:41507691-41507710 | Msa1288530:CDS | 25.0% |
| ! | TTACATAGAACATACCTTAT+GGG | + | chr8_3:41507708-41507727 | None:intergenic | 25.0% |
| ! | TTTACATAGAACATACCTTA+TGG | + | chr8_3:41507709-41507728 | None:intergenic | 25.0% |
| !! | TCTGAAAATCAATTTGTTTC+AGG | - | chr8_3:41507800-41507819 | Msa1288530:intron | 25.0% |
| !!! | ATGTTGAGAATATTTTTTCG+GGG | - | chr8_3:41507834-41507853 | Msa1288530:intron | 25.0% |
| ! | TGTTGTGATTTAAATGAGTT+TGG | - | chr8_3:41508185-41508204 | Msa1288530:intron | 25.0% |
| !! | TTATTCCAGTTTTTGTTACA+TGG | - | chr8_3:41508778-41508797 | Msa1288530:five_prime_UTR | 25.0% |
| ! | TATATCCATGTAACAAAAAC+TGG | + | chr8_3:41508786-41508805 | None:intergenic | 25.0% |
| AAATTGCATGTCGTTAGAAA+AGG | - | chr8_3:41506953-41506972 | Msa1288530:CDS | 30.0% | |
| AATTGCATGTCGTTAGAAAA+GGG | - | chr8_3:41506954-41506973 | Msa1288530:CDS | 30.0% | |
| ! | TTAATTGAAAGTATGGGGTT+TGG | - | chr8_3:41507313-41507332 | Msa1288530:intron | 30.0% |
| ! | TAATTGAAAGTATGGGGTTT+GGG | - | chr8_3:41507314-41507333 | Msa1288530:intron | 30.0% |
| GTCTGTTTAAGAAGATACAT+AGG | - | chr8_3:41507439-41507458 | Msa1288530:intron | 30.0% | |
| ATGGTTGAATTTGATCTGAA+TGG | - | chr8_3:41507465-41507484 | Msa1288530:intron | 30.0% | |
| !!! | TGTTGAGAATATTTTTTCGG+GGG | - | chr8_3:41507835-41507854 | Msa1288530:intron | 30.0% |
| CAACATTGAAGATTATGAAG+AGG | - | chr8_3:41508054-41508073 | Msa1288530:intron | 30.0% | |
| TGTGATTTAAATGAGTTTGG+AGG | - | chr8_3:41508188-41508207 | Msa1288530:intron | 30.0% | |
| AGTTTGGAGGAATTTATTTC+AGG | - | chr8_3:41508201-41508220 | Msa1288530:intron | 30.0% | |
| !!! | CAACTCTTTCAAGTTTTTCA+TGG | - | chr8_3:41508255-41508274 | Msa1288530:intron | 30.0% |
| ! | AAGTTTTTCATGGCATACAA+AGG | - | chr8_3:41508265-41508284 | Msa1288530:intron | 30.0% |
| !!! | GGCATACAAAGGATTTTTTA+TGG | - | chr8_3:41508276-41508295 | Msa1288530:intron | 30.0% |
| !! | TAGTTCTGATTATTGTGATC+TGG | - | chr8_3:41508428-41508447 | Msa1288530:intron | 30.0% |
| !!! | CATCTTTTTTCTCTTCTGTT+TGG | - | chr8_3:41508950-41508969 | Msa1288530:five_prime_UTR | 30.0% |
| AAATTGCATGTCGTTAGAAA+AGG | - | chr8_3:41506953-41506972 | Msa1288530:CDS | 30.0% | |
| AATTGCATGTCGTTAGAAAA+GGG | - | chr8_3:41506954-41506973 | Msa1288530:CDS | 30.0% | |
| ! | TTAATTGAAAGTATGGGGTT+TGG | - | chr8_3:41507313-41507332 | Msa1288530:intron | 30.0% |
| ! | TAATTGAAAGTATGGGGTTT+GGG | - | chr8_3:41507314-41507333 | Msa1288530:intron | 30.0% |
| GTCTGTTTAAGAAGATACAT+AGG | - | chr8_3:41507439-41507458 | Msa1288530:intron | 30.0% | |
| ATGGTTGAATTTGATCTGAA+TGG | - | chr8_3:41507465-41507484 | Msa1288530:intron | 30.0% | |
| !!! | TGTTGAGAATATTTTTTCGG+GGG | - | chr8_3:41507835-41507854 | Msa1288530:intron | 30.0% |
| CAACATTGAAGATTATGAAG+AGG | - | chr8_3:41508054-41508073 | Msa1288530:intron | 30.0% | |
| TGTGATTTAAATGAGTTTGG+AGG | - | chr8_3:41508188-41508207 | Msa1288530:intron | 30.0% | |
| AGTTTGGAGGAATTTATTTC+AGG | - | chr8_3:41508201-41508220 | Msa1288530:intron | 30.0% | |
| !!! | CAACTCTTTCAAGTTTTTCA+TGG | - | chr8_3:41508255-41508274 | Msa1288530:intron | 30.0% |
| ! | AAGTTTTTCATGGCATACAA+AGG | - | chr8_3:41508265-41508284 | Msa1288530:intron | 30.0% |
| !!! | GGCATACAAAGGATTTTTTA+TGG | - | chr8_3:41508276-41508295 | Msa1288530:intron | 30.0% |
| !! | TAGTTCTGATTATTGTGATC+TGG | - | chr8_3:41508428-41508447 | Msa1288530:intron | 30.0% |
| !!! | CATCTTTTTTCTCTTCTGTT+TGG | - | chr8_3:41508950-41508969 | Msa1288530:five_prime_UTR | 30.0% |
| AGAAGAGAGAAGAGAGAAAA+GGG | - | chr8_3:41506979-41506998 | Msa1288530:intron | 35.0% | |
| ATTGAAATTGGGGCTGAAAA+GGG | + | chr8_3:41507235-41507254 | None:intergenic | 35.0% | |
| AATTGAAATTGGGGCTGAAA+AGG | + | chr8_3:41507236-41507255 | None:intergenic | 35.0% | |
| GAGGAAGAAACAAGAAGAAT+TGG | - | chr8_3:41507347-41507366 | Msa1288530:intron | 35.0% | |
| GAAGAAACAAGAAGAATTGG+AGG | - | chr8_3:41507350-41507369 | Msa1288530:intron | 35.0% | |
| TAAGAAGATACATAGGGACA+TGG | - | chr8_3:41507446-41507465 | Msa1288530:intron | 35.0% | |
| AATTAAGTTCAGAGGAGTAG+AGG | - | chr8_3:41508018-41508037 | Msa1288530:intron | 35.0% | |
| ! | TTATGAAGAGGATTTGAAGC+CGG | - | chr8_3:41508066-41508085 | Msa1288530:intron | 35.0% |
| CGTCTATGTTTCTTAATCTC+AGG | - | chr8_3:41508229-41508248 | Msa1288530:intron | 35.0% | |
| AAAAAACCTTACCATCGCTA+AGG | + | chr8_3:41508353-41508372 | None:intergenic | 35.0% | |
| ! | CAAGTTTCAGTATTTTCGCA+TGG | - | chr8_3:41508631-41508650 | Msa1288530:CDS | 35.0% |
| CGCATGGAGTATAAGAAAAT+TGG | - | chr8_3:41508647-41508666 | Msa1288530:exon | 35.0% | |
| GCTTTGCTTATTATGCATTC+AGG | - | chr8_3:41508737-41508756 | Msa1288530:intron | 35.0% | |
| TTACACTTTAGTAGGAGATG+AGG | + | chr8_3:41508834-41508853 | None:intergenic | 35.0% | |
| AGAAGAGAGAAGAGAGAAAA+GGG | - | chr8_3:41506979-41506998 | Msa1288530:intron | 35.0% | |
| ATTGAAATTGGGGCTGAAAA+GGG | + | chr8_3:41507235-41507254 | None:intergenic | 35.0% | |
| AATTGAAATTGGGGCTGAAA+AGG | + | chr8_3:41507236-41507255 | None:intergenic | 35.0% | |
| GAGGAAGAAACAAGAAGAAT+TGG | - | chr8_3:41507347-41507366 | Msa1288530:intron | 35.0% | |
| GAAGAAACAAGAAGAATTGG+AGG | - | chr8_3:41507350-41507369 | Msa1288530:intron | 35.0% | |
| TAAGAAGATACATAGGGACA+TGG | - | chr8_3:41507446-41507465 | Msa1288530:intron | 35.0% | |
| AATTAAGTTCAGAGGAGTAG+AGG | - | chr8_3:41508018-41508037 | Msa1288530:intron | 35.0% | |
| ! | TTATGAAGAGGATTTGAAGC+CGG | - | chr8_3:41508066-41508085 | Msa1288530:intron | 35.0% |
| CGTCTATGTTTCTTAATCTC+AGG | - | chr8_3:41508229-41508248 | Msa1288530:intron | 35.0% | |
| AAAAAACCTTACCATCGCTA+AGG | + | chr8_3:41508353-41508372 | None:intergenic | 35.0% | |
| ! | CAAGTTTCAGTATTTTCGCA+TGG | - | chr8_3:41508631-41508650 | Msa1288530:CDS | 35.0% |
| CGCATGGAGTATAAGAAAAT+TGG | - | chr8_3:41508647-41508666 | Msa1288530:exon | 35.0% | |
| GCTTTGCTTATTATGCATTC+AGG | - | chr8_3:41508737-41508756 | Msa1288530:intron | 35.0% | |
| TTACACTTTAGTAGGAGATG+AGG | + | chr8_3:41508834-41508853 | None:intergenic | 35.0% | |
| GAGAAGAGAGAAGAGAGAAA+AGG | - | chr8_3:41506978-41506997 | Msa1288530:intron | 40.0% | |
| !!! | TGCACCGATTTTAGAAGCAA+AGG | - | chr8_3:41507142-41507161 | Msa1288530:intron | 40.0% |
| GAATTTGATCTGAATGGTGC+TGG | - | chr8_3:41507471-41507490 | Msa1288530:intron | 40.0% | |
| AGAGCTGCAATTAAGTTCAG+AGG | - | chr8_3:41508010-41508029 | Msa1288530:intron | 40.0% | |
| ! | ATTTGAAGCCGGTGAGTTAT+GGG | - | chr8_3:41508077-41508096 | Msa1288530:intron | 40.0% |
| TATTCTTCCCCATAACTCAC+CGG | + | chr8_3:41508088-41508107 | None:intergenic | 40.0% | |
| ! | TTTAAGAAGCGCAAGTCTCT+TGG | - | chr8_3:41508325-41508344 | Msa1288530:intron | 40.0% |
| ! | TGATGTTGGCTACTTTGTGA+TGG | - | chr8_3:41508713-41508732 | Msa1288530:intron | 40.0% |
| ATTCAGGTGTCTTTCTTGCT+GGG | - | chr8_3:41508753-41508772 | Msa1288530:intron | 40.0% | |
| !! | TGGCTGTTTCTTCTTGTGAT+TGG | - | chr8_3:41508970-41508989 | Msa1288530:five_prime_UTR | 40.0% |
| GAGAAGAGAGAAGAGAGAAA+AGG | - | chr8_3:41506978-41506997 | Msa1288530:intron | 40.0% | |
| !!! | TGCACCGATTTTAGAAGCAA+AGG | - | chr8_3:41507142-41507161 | Msa1288530:intron | 40.0% |
| GAATTTGATCTGAATGGTGC+TGG | - | chr8_3:41507471-41507490 | Msa1288530:intron | 40.0% | |
| AGAGCTGCAATTAAGTTCAG+AGG | - | chr8_3:41508010-41508029 | Msa1288530:intron | 40.0% | |
| ! | ATTTGAAGCCGGTGAGTTAT+GGG | - | chr8_3:41508077-41508096 | Msa1288530:intron | 40.0% |
| TATTCTTCCCCATAACTCAC+CGG | + | chr8_3:41508088-41508107 | None:intergenic | 40.0% | |
| ! | TTTAAGAAGCGCAAGTCTCT+TGG | - | chr8_3:41508325-41508344 | Msa1288530:intron | 40.0% |
| ! | TGATGTTGGCTACTTTGTGA+TGG | - | chr8_3:41508713-41508732 | Msa1288530:intron | 40.0% |
| ATTCAGGTGTCTTTCTTGCT+GGG | - | chr8_3:41508753-41508772 | Msa1288530:intron | 40.0% | |
| !! | TGGCTGTTTCTTCTTGTGAT+TGG | - | chr8_3:41508970-41508989 | Msa1288530:five_prime_UTR | 40.0% |
| AAGGGAACGAGAGAAAGAAG+AGG | - | chr8_3:41506997-41507016 | Msa1288530:intron | 45.0% | |
| AGGGAACGAGAGAAAGAAGA+GGG | - | chr8_3:41506998-41507017 | Msa1288530:intron | 45.0% | |
| AGAGAAAGAAGAGGGAACGA+AGG | - | chr8_3:41507006-41507025 | Msa1288530:intron | 45.0% | |
| GAGAAAGAAGAGGGAACGAA+GGG | - | chr8_3:41507007-41507026 | Msa1288530:intron | 45.0% | |
| ATTGGGGCTGAAAAGGGTTA+GGG | + | chr8_3:41507229-41507248 | None:intergenic | 45.0% | |
| AATTGGGGCTGAAAAGGGTT+AGG | + | chr8_3:41507230-41507249 | None:intergenic | 45.0% | |
| ! | ATGGGGTTTGGGTTTGCAAT+TGG | - | chr8_3:41507325-41507344 | Msa1288530:intron | 45.0% |
| ! | TTGATCTGAATGGTGCTGGA+TGG | - | chr8_3:41507475-41507494 | Msa1288530:intron | 45.0% |
| ! | GATTTGAAGCCGGTGAGTTA+TGG | - | chr8_3:41508076-41508095 | Msa1288530:intron | 45.0% |
| ! | TTTGAAGCCGGTGAGTTATG+GGG | - | chr8_3:41508078-41508097 | Msa1288530:intron | 45.0% |
| CATTCAGGTGTCTTTCTTGC+TGG | - | chr8_3:41508752-41508771 | Msa1288530:intron | 45.0% | |
| AAGGGAACGAGAGAAAGAAG+AGG | - | chr8_3:41506997-41507016 | Msa1288530:intron | 45.0% | |
| AGGGAACGAGAGAAAGAAGA+GGG | - | chr8_3:41506998-41507017 | Msa1288530:intron | 45.0% | |
| AGAGAAAGAAGAGGGAACGA+AGG | - | chr8_3:41507006-41507025 | Msa1288530:intron | 45.0% | |
| GAGAAAGAAGAGGGAACGAA+GGG | - | chr8_3:41507007-41507026 | Msa1288530:intron | 45.0% | |
| ATTGGGGCTGAAAAGGGTTA+GGG | + | chr8_3:41507229-41507248 | None:intergenic | 45.0% | |
| AATTGGGGCTGAAAAGGGTT+AGG | + | chr8_3:41507230-41507249 | None:intergenic | 45.0% | |
| ! | ATGGGGTTTGGGTTTGCAAT+TGG | - | chr8_3:41507325-41507344 | Msa1288530:intron | 45.0% |
| ! | TTGATCTGAATGGTGCTGGA+TGG | - | chr8_3:41507475-41507494 | Msa1288530:intron | 45.0% |
| ! | GATTTGAAGCCGGTGAGTTA+TGG | - | chr8_3:41508076-41508095 | Msa1288530:intron | 45.0% |
| ! | TTTGAAGCCGGTGAGTTATG+GGG | - | chr8_3:41508078-41508097 | Msa1288530:intron | 45.0% |
| CATTCAGGTGTCTTTCTTGC+TGG | - | chr8_3:41508752-41508771 | Msa1288530:intron | 45.0% | |
| !! | ATATATATATATATATATCA+AGG | - | chr8_3:41508926-41508945 | Msa1288530:five_prime_UTR | 5.0% |
| !! | ATATATATATATATATATCA+AGG | - | chr8_3:41508926-41508945 | Msa1288530:five_prime_UTR | 5.0% |
| AGAGAAACGGGAGAGGAAGA+AGG | - | chr8_3:41506901-41506920 | Msa1288530:CDS | 50.0% | |
| GAGAAACGGGAGAGGAAGAA+GGG | - | chr8_3:41506902-41506921 | Msa1288530:CDS | 50.0% | |
| ! | TCTCCCGTTCCTGTTTCTCT+CGG | + | chr8_3:41507034-41507053 | None:intergenic | 50.0% |
| AGAGAGAACGGAAGAGGAGA+GGG | - | chr8_3:41507069-41507088 | Msa1288530:intron | 50.0% | |
| !! | GTGCAGATCAGAGTGTTGGA+CGG | + | chr8_3:41507127-41507146 | None:intergenic | 50.0% |
| ATCGGTGCAGATCAGAGTGT+TGG | + | chr8_3:41507131-41507150 | None:intergenic | 50.0% | |
| GGCTGAAAAGGGTTAGGGTT+TGG | + | chr8_3:41507224-41507243 | None:intergenic | 50.0% | |
| ! | GGGTTTGGGTTTGCAATTGG+AGG | - | chr8_3:41507328-41507347 | Msa1288530:intron | 50.0% |
| CGGGGGTTATCAGTACTCTT+TGG | - | chr8_3:41507852-41507871 | Msa1288530:CDS | 50.0% | |
| ! | CTTTGGTTCATGCAGCTGCT+TGG | - | chr8_3:41507869-41507888 | Msa1288530:CDS | 50.0% |
| ! | TTGGTGCCTTAGCGATGGTA+AGG | - | chr8_3:41508344-41508363 | Msa1288530:intron | 50.0% |
| AGAGAAACGGGAGAGGAAGA+AGG | - | chr8_3:41506901-41506920 | Msa1288530:CDS | 50.0% | |
| GAGAAACGGGAGAGGAAGAA+GGG | - | chr8_3:41506902-41506921 | Msa1288530:CDS | 50.0% | |
| ! | TCTCCCGTTCCTGTTTCTCT+CGG | + | chr8_3:41507034-41507053 | None:intergenic | 50.0% |
| AGAGAGAACGGAAGAGGAGA+GGG | - | chr8_3:41507069-41507088 | Msa1288530:intron | 50.0% | |
| !! | GTGCAGATCAGAGTGTTGGA+CGG | + | chr8_3:41507127-41507146 | None:intergenic | 50.0% |
| ATCGGTGCAGATCAGAGTGT+TGG | + | chr8_3:41507131-41507150 | None:intergenic | 50.0% | |
| GGCTGAAAAGGGTTAGGGTT+TGG | + | chr8_3:41507224-41507243 | None:intergenic | 50.0% | |
| ! | GGGTTTGGGTTTGCAATTGG+AGG | - | chr8_3:41507328-41507347 | Msa1288530:intron | 50.0% |
| CGGGGGTTATCAGTACTCTT+TGG | - | chr8_3:41507852-41507871 | Msa1288530:CDS | 50.0% | |
| ! | CTTTGGTTCATGCAGCTGCT+TGG | - | chr8_3:41507869-41507888 | Msa1288530:CDS | 50.0% |
| ! | TTGGTGCCTTAGCGATGGTA+AGG | - | chr8_3:41508344-41508363 | Msa1288530:intron | 50.0% |
| AAACGGGAGAGGAAGAAGGG+TGG | - | chr8_3:41506905-41506924 | Msa1288530:CDS | 55.0% | |
| ACGAAGGGACCGAGAGAAAC+AGG | - | chr8_3:41507022-41507041 | Msa1288530:intron | 55.0% | |
| GGGACCGAGAGAAACAGGAA+CGG | - | chr8_3:41507027-41507046 | Msa1288530:intron | 55.0% | |
| GGACCGAGAGAAACAGGAAC+GGG | - | chr8_3:41507028-41507047 | Msa1288530:intron | 55.0% | |
| GAGAGAAACAGGAACGGGAG+AGG | - | chr8_3:41507033-41507052 | Msa1288530:intron | 55.0% | |
| ACAGGAACGGGAGAGGAAGA+AGG | - | chr8_3:41507040-41507059 | Msa1288530:intron | 55.0% | |
| CAGGAACGGGAGAGGAAGAA+GGG | - | chr8_3:41507041-41507060 | Msa1288530:intron | 55.0% | |
| AGAAGGGCGACGAGAGAGAA+CGG | - | chr8_3:41507057-41507076 | Msa1288530:intron | 55.0% | |
| GAGAGAGAACGGAAGAGGAG+AGG | - | chr8_3:41507068-41507087 | Msa1288530:intron | 55.0% | |
| !! | GTCTCTTGGTGCCTTAGCGA+TGG | - | chr8_3:41508339-41508358 | Msa1288530:intron | 55.0% |
| AAACGGGAGAGGAAGAAGGG+TGG | - | chr8_3:41506905-41506924 | Msa1288530:CDS | 55.0% | |
| ACGAAGGGACCGAGAGAAAC+AGG | - | chr8_3:41507022-41507041 | Msa1288530:intron | 55.0% | |
| GGGACCGAGAGAAACAGGAA+CGG | - | chr8_3:41507027-41507046 | Msa1288530:intron | 55.0% | |
| GGACCGAGAGAAACAGGAAC+GGG | - | chr8_3:41507028-41507047 | Msa1288530:intron | 55.0% | |
| GAGAGAAACAGGAACGGGAG+AGG | - | chr8_3:41507033-41507052 | Msa1288530:intron | 55.0% | |
| ACAGGAACGGGAGAGGAAGA+AGG | - | chr8_3:41507040-41507059 | Msa1288530:intron | 55.0% | |
| CAGGAACGGGAGAGGAAGAA+GGG | - | chr8_3:41507041-41507060 | Msa1288530:intron | 55.0% | |
| AGAAGGGCGACGAGAGAGAA+CGG | - | chr8_3:41507057-41507076 | Msa1288530:intron | 55.0% | |
| GAGAGAGAACGGAAGAGGAG+AGG | - | chr8_3:41507068-41507087 | Msa1288530:intron | 55.0% | |
| !! | GTCTCTTGGTGCCTTAGCGA+TGG | - | chr8_3:41508339-41508358 | Msa1288530:intron | 55.0% |
| GCGACGAGAGAGAACGGAAG+AGG | - | chr8_3:41507063-41507082 | Msa1288530:intron | 60.0% | |
| !! | GATCAGAGTGTTGGACGGCG+AGG | + | chr8_3:41507122-41507141 | None:intergenic | 60.0% |
| GCGACGAGAGAGAACGGAAG+AGG | - | chr8_3:41507063-41507082 | Msa1288530:intron | 60.0% | |
| !! | GATCAGAGTGTTGGACGGCG+AGG | + | chr8_3:41507122-41507141 | None:intergenic | 60.0% |
| GTGTTGGACGGCGAGGTCGA+CGG | + | chr8_3:41507115-41507134 | None:intergenic | 65.0% | |
| GTGTTGGACGGCGAGGTCGA+CGG | + | chr8_3:41507115-41507134 | None:intergenic | 65.0% | |
| TTGGACGGCGAGGTCGACGG+CGG | + | chr8_3:41507112-41507131 | None:intergenic | 70.0% | |
| TTGGACGGCGAGGTCGACGG+CGG | + | chr8_3:41507112-41507131 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 41506896 | 41509040 | 41506896 | ID=Msa1288530;Name=Msa1288530 |
| chr8_3 | mRNA | 41506896 | 41509040 | 41506896 | ID=Msa1288530-mRNA-1;Parent=Msa1288530;Name=Msa1288530-mRNA-1;_AED=0.43;_eAED=0.43;_QI=296|0.5|0.8|0.8|0.75|0.6|5|0|134 |
| chr8_3 | exon | 41506896 | 41506988 | 41506896 | ID=Msa1288530-mRNA-1:exon:11405;Parent=Msa1288530-mRNA-1 |
| chr8_3 | exon | 41507576 | 41507713 | 41507576 | ID=Msa1288530-mRNA-1:exon:11404;Parent=Msa1288530-mRNA-1 |
| chr8_3 | exon | 41507849 | 41507936 | 41507849 | ID=Msa1288530-mRNA-1:exon:11403;Parent=Msa1288530-mRNA-1 |
| chr8_3 | exon | 41508565 | 41508669 | 41508565 | ID=Msa1288530-mRNA-1:exon:11402;Parent=Msa1288530-mRNA-1 |
| chr8_3 | exon | 41508764 | 41509040 | 41508764 | ID=Msa1288530-mRNA-1:exon:11401;Parent=Msa1288530-mRNA-1 |
| chr8_3 | five_prime_UTR | 41508764 | 41509040 | 41508764 | ID=Msa1288530-mRNA-1:five_prime_utr;Parent=Msa1288530-mRNA-1 |
| chr8_3 | five_prime_UTR | 41508651 | 41508669 | 41508651 | ID=Msa1288530-mRNA-1:five_prime_utr;Parent=Msa1288530-mRNA-1 |
| chr8_3 | CDS | 41508565 | 41508650 | 41508565 | ID=Msa1288530-mRNA-1:cds;Parent=Msa1288530-mRNA-1 |
| chr8_3 | CDS | 41507849 | 41507936 | 41507849 | ID=Msa1288530-mRNA-1:cds;Parent=Msa1288530-mRNA-1 |
| chr8_3 | CDS | 41507576 | 41507713 | 41507576 | ID=Msa1288530-mRNA-1:cds;Parent=Msa1288530-mRNA-1 |
| chr8_3 | CDS | 41506896 | 41506988 | 41506896 | ID=Msa1288530-mRNA-1:cds;Parent=Msa1288530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
