AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1252370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1252370 MtrunA17_Chr5g0447341 93.069 101 7 0 105 205 377 477 9.32e-58 191
Msa1252370 MtrunA17_Chr3g0120471 82.178 101 15 1 105 205 376 473 2.67e-49 169
Msa1252370 MtrunA17_Chr7g0271011 40.458 131 69 2 79 204 371 497 1.16e-27 110
Msa1252370 MtrunA17_Chr3g0144731 45.000 100 55 0 105 204 23 122 1.27e-26 101
Msa1252370 MtrunA17_Chr3g0141761 43.000 100 57 0 105 204 392 491 2.21e-25 103
Msa1252370 MtrunA17_Chr4g0074531 50.000 100 50 0 105 204 383 482 1.37e-24 101
Msa1252370 MtrunA17_Chr4g0077071 88.000 50 6 0 105 154 32 81 1.86e-23 90.5
Msa1252370 MtrunA17_Chr4g0035171 43.000 100 57 0 105 204 390 489 4.86e-23 97.4
Msa1252370 MtrunA17_Chr6g0454161 80.392 51 10 0 151 201 125 175 3.59e-20 87.8
Msa1252370 MtrunA17_Chr4g0033371 91.176 34 3 0 206 239 421 454 3.14e-14 71.6
Msa1252370 MtrunA17_Chr5g0441571 41.441 111 59 2 16 121 141 250 4.70e-14 71.2
Msa1252370 MtrunA17_Chr5g0441651 39.640 111 61 2 16 121 149 258 4.26e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1252370 AT5G48300.1 82.178 101 18 0 105 205 382 482 1.66e-51 175
Msa1252370 AT1G27680.1 44.860 107 58 1 105 210 380 486 2.58e-26 107
Msa1252370 AT5G19220.1 47.000 100 53 0 105 204 384 483 5.42e-25 103
Msa1252370 AT2G21590.2 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa1252370 AT2G21590.3 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa1252370 AT2G21590.5 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa1252370 AT2G21590.4 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa1252370 AT2G21590.7 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa1252370 AT2G21590.1 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa1252370 AT2G21590.6 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa1252370 AT4G39210.2 44.000 100 56 0 105 204 383 482 2.26e-22 95.9
Msa1252370 AT4G39210.1 44.000 100 56 0 105 204 383 482 2.26e-22 95.9
Msa1252370 AT1G05610.1 48.039 102 51 1 105 204 336 437 1.54e-20 90.5
Msa1252370 AT1G05610.2 48.039 102 51 1 105 204 342 443 1.57e-20 90.5

Find 90 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAATTTGTCTTCAAATT+TGG 0.102206 8_2:-49293094 Msa1252370:three_prime_UTR
TTTAGAAGCAAAGGAAATTA+AGG 0.221632 8_2:-49299581 Msa1252370:intron
AATTAAGCTTTCTTTGAATA+AGG 0.238635 8_2:+49299436 None:intergenic
AGAAAGCTTAATTGAAAGTA+TGG 0.246651 8_2:-49299426 Msa1252370:CDS
GTACAGTTTGAGAGTGTAAA+TGG 0.292311 8_2:-49293256 Msa1252370:three_prime_UTR
GGGCTGCATTCTTGCATATC+AGG 0.296848 8_2:-49294693 Msa1252370:CDS
CGGGGAAGGATGTGTGATTA+AGG 0.317043 8_2:-49294860 Msa1252370:intron
ATTTCCTTTGCTTCTAAAAT+CGG 0.330480 8_2:+49299586 None:intergenic
GAGGAAGAAACAAGAAGAAT+TGG 0.332205 8_2:-49299385 Msa1252370:CDS
TAATTGAAAGTATGGGGTTT+GGG 0.345729 8_2:-49299418 Msa1252370:CDS
ATGGGGTTTGGGTTTGCAAT+TGG 0.350878 8_2:-49299407 Msa1252370:CDS
TTAATTGAAAGTATGGGGTT+TGG 0.364955 8_2:-49299419 Msa1252370:CDS
GATGAACTCTTCACATTTGA+AGG 0.374057 8_2:+49293752 None:intergenic
GACAAGAGGAGATTGGAAAA+TGG 0.375067 8_2:-49293504 Msa1252370:three_prime_UTR
AGAAGAGAGAAGAGAGAAAA+GGG 0.376057 8_2:-49299753 Msa1252370:five_prime_UTR
GATATCACTGATAGTGTTAT+CGG 0.379793 8_2:-49294880 Msa1252370:CDS
ACGAAGGGACCGAGAGAAAC+AGG 0.383319 8_2:-49299710 Msa1252370:five_prime_UTR
CGTCTATGTTTCTTAATCTC+AGG 0.392267 8_2:-49298503 Msa1252370:CDS
GGCAGTGTTCCACTTGGTAT+TGG 0.399314 8_2:-49294415 Msa1252370:CDS
TATTGAAGACACTTTGTTGA+TGG 0.401901 8_2:-49294661 Msa1252370:CDS
GTTGACAAGAATGCTAGAAT+TGG 0.404186 8_2:-49294364 Msa1252370:CDS
GAGAAGAGAGAAGAGAGAAA+AGG 0.435926 8_2:-49299754 Msa1252370:five_prime_UTR
AAATCTTCCATTCAGTGGTT+GGG 0.441064 8_2:-49294713 Msa1252370:CDS
AAATTGCATGTCGTTAGAAA+AGG 0.441642 8_2:-49299779 Msa1252370:five_prime_UTR
TCTCCCGTTCCTGTTTCTCT+CGG 0.447250 8_2:+49299701 None:intergenic
GAAAGCTTAATTGAAAGTAT+GGG 0.452862 8_2:-49299425 Msa1252370:CDS
GGGTTTGGGTTTGCAATTGG+AGG 0.457079 8_2:-49299404 Msa1252370:CDS
TTATCCAAGTCGACATCGTT+GGG 0.457199 8_2:+49293673 None:intergenic
TGATGAAGACAAGAGGAGAT+TGG 0.460581 8_2:-49293511 Msa1252370:three_prime_UTR
CTGAATTTCAAATTGCATGT+GGG 0.467504 8_2:-49293385 Msa1252370:three_prime_UTR
CAACGATGTCGACTTGGATA+AGG 0.467770 8_2:-49293671 Msa1252370:CDS
ATATCACTGATAGTGTTATC+GGG 0.469841 8_2:-49294879 Msa1252370:CDS
ACAGGAACGGGAGAGGAAGA+AGG 0.470342 8_2:-49299692 Msa1252370:five_prime_UTR
AAAATCTTCCATTCAGTGGT+TGG 0.473513 8_2:-49294714 Msa1252370:CDS
AGAGAAACGGGAGAGGAAGA+AGG 0.475515 8_2:-49299831 Msa1252370:five_prime_UTR
TTTAAGAAGCGCAAGTCTCT+TGG 0.484148 8_2:-49298407 Msa1252370:CDS
AGAGAGAACGGAAGAGGAGA+GGG 0.484152 8_2:-49299663 Msa1252370:five_prime_UTR
GAAGAAACAAGAAGAATTGG+AGG 0.484939 8_2:-49299382 Msa1252370:intron
AGTGTTCACATGAGAAGGCT+TGG 0.497606 8_2:-49293723 Msa1252370:CDS
GGGGACGAGAGAAACGGGAG+AGG 0.500968 8_2:-49299838 Msa1252370:five_prime_UTR
GGACCGAGAGAAACAGGAAC+GGG 0.505385 8_2:-49299704 Msa1252370:five_prime_UTR
CATTCCCAACGATGTCGACT+TGG 0.506190 8_2:-49293677 Msa1252370:CDS
GCGACGAGAGAGAACGGAAG+AGG 0.507684 8_2:-49299669 Msa1252370:five_prime_UTR
GCATGCTGCTGAATAATTAG+TGG 0.510173 8_2:+49293309 None:intergenic
GAGAGAAACAGGAACGGGAG+AGG 0.518708 8_2:-49299699 Msa1252370:five_prime_UTR
ATTGAAGACACTTTGTTGAT+GGG 0.519372 8_2:-49294660 Msa1252370:CDS
AATGCAGCCCAACCACTGAA+TGG 0.520984 8_2:+49294706 None:intergenic
AGAAGGGCGACGAGAGAGAA+CGG 0.522224 8_2:-49299675 Msa1252370:five_prime_UTR
CAGGAACGGGAGAGGAAGAA+GGG 0.522491 8_2:-49299691 Msa1252370:five_prime_UTR
AAGGGAACGAGAGAAAGAAG+AGG 0.523683 8_2:-49299735 Msa1252370:five_prime_UTR
CTTATCCAAGTCGACATCGT+TGG 0.524700 8_2:+49293672 None:intergenic
AATTGCATGTCGTTAGAAAA+GGG 0.524800 8_2:-49299778 Msa1252370:five_prime_UTR
AATGTTTAAAGACAAATCTA+CGG 0.528586 8_2:-49293435 Msa1252370:three_prime_UTR
GAGAAACGGGAGAGGAAGAA+GGG 0.529600 8_2:-49299830 Msa1252370:five_prime_UTR
GAGAGAGAACGGAAGAGGAG+AGG 0.532551 8_2:-49299664 Msa1252370:five_prime_UTR
CAATGAGTGTTCACATGAGA+AGG 0.534579 8_2:-49293728 Msa1252370:CDS
ACTGAATTTCAAATTGCATG+TGG 0.539019 8_2:-49293386 Msa1252370:three_prime_UTR
ATCGGTGCAGATCAGAGTGT+TGG 0.543077 8_2:+49299604 None:intergenic
AAAGCTTAATTGAAAGTATG+GGG 0.546070 8_2:-49299424 Msa1252370:CDS
CAACATTGAAGATTATGAAG+AGG 0.549840 8_2:-49298678 Msa1252370:CDS
TATGATATGTACTCAGAACT+TGG 0.552496 8_2:+49293354 None:intergenic
GTGTTGGACGGCGAGGTCGA+CGG 0.559179 8_2:+49299620 None:intergenic
CTGCAAAATCTTCCATTCAG+TGG 0.561130 8_2:-49294718 Msa1252370:CDS
GTCTCTTGGTGCCTTAGCGA+TGG 0.562521 8_2:-49298393 Msa1252370:intron
TGAATTTCAAATTGCATGTG+GGG 0.562677 8_2:-49293384 Msa1252370:three_prime_UTR
AGAGAAAGAAGAGGGAACGA+AGG 0.563011 8_2:-49299726 Msa1252370:five_prime_UTR
ATGTCGACTTGGATAAGGTA+AGG 0.566871 8_2:-49293666 Msa1252370:intron
CCTCACACTTTCTTCAGATG+AGG 0.567909 8_2:+49293224 None:intergenic
TTATGAAGAGGATTTGAAGC+CGG 0.569826 8_2:-49298666 Msa1252370:intron
CTGCATTCTTGCATATCAGG+AGG 0.573281 8_2:-49294690 Msa1252370:CDS
GAGAAAGAAGAGGGAACGAA+GGG 0.574865 8_2:-49299725 Msa1252370:five_prime_UTR
ACTGATAGTGTTATCGGGGA+AGG 0.575346 8_2:-49294874 Msa1252370:CDS
ATGTTTAAAGACAAATCTAC+GGG 0.579761 8_2:-49293434 Msa1252370:three_prime_UTR
AATTAAGTTCAGAGGAGTAG+AGG 0.591705 8_2:-49298714 Msa1252370:CDS
AAACGGGAGAGGAAGAAGGG+TGG 0.593784 8_2:-49299827 Msa1252370:five_prime_UTR
AGAGCTGCAATTAAGTTCAG+AGG 0.598621 8_2:-49298722 Msa1252370:CDS
AGGGAACGAGAGAAAGAAGA+GGG 0.605408 8_2:-49299734 Msa1252370:five_prime_UTR
GCTAAAGGCAGTGTTCCACT+TGG 0.607159 8_2:-49294421 Msa1252370:CDS
GCATCAAGCATCTTTGACAG+AGG 0.620306 8_2:+49294904 None:intergenic
GGGACCGAGAGAAACAGGAA+CGG 0.630598 8_2:-49299705 Msa1252370:five_prime_UTR
GATCAGAGTGTTGGACGGCG+AGG 0.636768 8_2:+49299613 None:intergenic
AAGGCAATGATGAAGACAAG+AGG 0.640920 8_2:-49293518 Msa1252370:three_prime_UTR
TAGAATTGGAGAAAATGTGA+AGG 0.647495 8_2:-49294350 Msa1252370:intron
GAATTTCAAATTGCATGTGG+GGG 0.666111 8_2:-49293383 Msa1252370:three_prime_UTR
TTGGACGGCGAGGTCGACGG+CGG 0.673722 8_2:+49299623 None:intergenic
TATCACTGATAGTGTTATCG+GGG 0.674328 8_2:-49294878 Msa1252370:CDS
GTGCAGATCAGAGTGTTGGA+CGG 0.676123 8_2:+49299608 None:intergenic
GAGTTTCTGCCAATACCAAG+TGG 0.682922 8_2:+49294406 None:intergenic
GATGGGCGCATATTATTACG+AGG 0.683765 8_2:-49294643 Msa1252370:intron
CCTCATCTGAAGAAAGTGTG+AGG 0.684673 8_2:-49293224 Msa1252370:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATATTTATGATGT+TGG - chr8_2:49294873-49294892 Msa1252370:CDS 10.0%
!!! TGGAATTTTAAAAAAATATT+TGG - chr8_2:49296101-49296120 Msa1252370:intron 10.0%
!!! TTTCTTCTATATTATTTTAA+TGG - chr8_2:49296982-49297001 Msa1252370:intron 10.0%
!!! AATAAGTTTTATATTTGTTT+TGG + chr8_2:49299010-49299029 None:intergenic 10.0%
!! AAATTGAATGTATAAATTGT+AGG - chr8_2:49293912-49293931 Msa1252370:intron 15.0%
!! AATTGAATGTATAAATTGTA+GGG - chr8_2:49293913-49293932 Msa1252370:intron 15.0%
!! AAAAATATTCTCAACATTAA+AGG + chr8_2:49294005-49294024 None:intergenic 15.0%
!!! TAATGTTGAGAATATTTTTT+CGG - chr8_2:49294006-49294025 Msa1252370:intron 15.0%
!!! AAATTTCATTCATTCTTTTA+TGG - chr8_2:49294093-49294112 Msa1252370:intron 15.0%
!! AATAATTGATTGAAAACTAT+AGG + chr8_2:49294317-49294336 None:intergenic 15.0%
!! TAAAAAATTTACACTTTAGT+AGG + chr8_2:49295016-49295035 None:intergenic 15.0%
!!! GTATTGATTTATTTATTTCT+GGG - chr8_2:49295436-49295455 Msa1252370:intron 15.0%
!! AAAAAAATATTTGGTTGATT+TGG - chr8_2:49296110-49296129 Msa1252370:intron 15.0%
!! TTAATTCAATTATGTTATGA+TGG - chr8_2:49296525-49296544 Msa1252370:intron 15.0%
!! TATAATGAAAAAAATGAACT+TGG - chr8_2:49299089-49299108 Msa1252370:intron 15.0%
!!! ATCTAATATTGTTTTGTTAA+AGG - chr8_2:49299339-49299358 Msa1252370:intron 15.0%
!!! AATTAATTTGTCTTCAAATT+TGG - chr8_2:49299812-49299831 Msa1252370:five_prime_UTR 15.0%
!! TTCATTGAGAAATTGAAATT+GGG + chr8_2:49293420-49293439 None:intergenic 20.0%
!! AATTTCAATTTCTCAATGAA+GGG - chr8_2:49293420-49293439 Msa1252370:three_prime_UTR 20.0%
!! AATTAAGCTTTCTTTGAATA+AGG + chr8_2:49293473-49293492 None:intergenic 20.0%
!!! TGTAATTGTTTTATGATGAA+TGG - chr8_2:49293951-49293970 Msa1252370:intron 20.0%
!!! AATGTTGAGAATATTTTTTC+GGG - chr8_2:49294007-49294026 Msa1252370:intron 20.0%
!! CAATTCAAGATACAAAAAAA+AGG + chr8_2:49294341-49294360 None:intergenic 20.0%
!!! AATTTTAACTTCAATGTGAA+TGG - chr8_2:49294722-49294741 Msa1252370:CDS 20.0%
!! ATCAATTGAAGTCAATAATT+TGG + chr8_2:49295055-49295074 None:intergenic 20.0%
!!! ATCTAAATTCTAAAGCATTA+TGG + chr8_2:49295231-49295250 None:intergenic 20.0%
!!! GTTATTGAAATTTTTGCAAA+TGG - chr8_2:49295414-49295433 Msa1252370:intron 20.0%
!!! GGTATTGATTTATTTATTTC+TGG - chr8_2:49295435-49295454 Msa1252370:intron 20.0%
!! TAAAATCTAATTGATACTGA+TGG - chr8_2:49295621-49295640 Msa1252370:intron 20.0%
!!! TTAACAGACTTTAATTTTTG+TGG - chr8_2:49295711-49295730 Msa1252370:intron 20.0%
!! CGAATTTGGAAAAAAAAATT+TGG - chr8_2:49295801-49295820 Msa1252370:intron 20.0%
!!! AGCTTTCTATTGATAATTTT+TGG - chr8_2:49296021-49296040 Msa1252370:intron 20.0%
!!! TATTGATAATTTTTGGTTTG+TGG - chr8_2:49296028-49296047 Msa1252370:intron 20.0%
!!! TTAGTTATTCTTTTGAGTTT+TGG - chr8_2:49296081-49296100 Msa1252370:intron 20.0%
!!! AAATTTTGTCTATTTTCCAA+TGG + chr8_2:49296302-49296321 None:intergenic 20.0%
!! AATGTTCATGTTGAAATATT+TGG - chr8_2:49296606-49296625 Msa1252370:intron 20.0%
!! TTCTATTCACATGTAAATAA+AGG + chr8_2:49297379-49297398 None:intergenic 20.0%
!! TTGTTCTTTATGTTATGTAA+TGG + chr8_2:49297406-49297425 None:intergenic 20.0%
!! TAAGAATTGATCAAAATAGA+AGG - chr8_2:49297759-49297778 Msa1252370:intron 20.0%
!!! ATGGATTAGAAAGTAAAATA+GGG + chr8_2:49298615-49298634 None:intergenic 20.0%
!!! ATATTTGTTTTGGATAATGA+TGG + chr8_2:49299000-49299019 None:intergenic 20.0%
!!! AATATTGTTTTGTTAAAGGA+TGG - chr8_2:49299343-49299362 Msa1252370:intron 20.0%
!! AATGTTTAAAGACAAATCTA+CGG - chr8_2:49299471-49299490 Msa1252370:intron 20.0%
!!! ATTTCCTTTGCTTCTAAAAT+CGG + chr8_2:49293323-49293342 None:intergenic 25.0%
! TTTAGAAGCAAAGGAAATTA+AGG - chr8_2:49293325-49293344 Msa1252370:three_prime_UTR 25.0%
! TCATTGAGAAATTGAAATTG+GGG + chr8_2:49293419-49293438 None:intergenic 25.0%
! CTTCATTGAGAAATTGAAAT+TGG + chr8_2:49293421-49293440 None:intergenic 25.0%
! CAATTTCAATTTCTCAATGA+AGG - chr8_2:49293419-49293438 Msa1252370:three_prime_UTR 25.0%
! AGAAAGCTTAATTGAAAGTA+TGG - chr8_2:49293480-49293499 Msa1252370:three_prime_UTR 25.0%
!! GAAAGCTTAATTGAAAGTAT+GGG - chr8_2:49293481-49293500 Msa1252370:three_prime_UTR 25.0%
!! AAAGCTTAATTGAAAGTATG+GGG - chr8_2:49293482-49293501 Msa1252370:three_prime_UTR 25.0%
! TGTAAATCATTTCTGTTTGA+TGG - chr8_2:49293565-49293584 Msa1252370:intron 25.0%
! TCTGTTTAAGAAGATACATA+GGG - chr8_2:49293614-49293633 Msa1252370:intron 25.0%
! AAATCAGATACAAAGGAAAA+TGG + chr8_2:49293701-49293720 None:intergenic 25.0%
!! ATTTTCCTTTGTATCTGATT+TGG - chr8_2:49293700-49293719 Msa1252370:CDS 25.0%
!! TTTTACCAAATCAGATACAA+AGG + chr8_2:49293708-49293727 None:intergenic 25.0%
!! AAAAAGCTATTTCACAATAC+TGG + chr8_2:49293736-49293755 None:intergenic 25.0%
! TATGATAATTTCATCCCATA+AGG - chr8_2:49293865-49293884 Msa1252370:intron 25.0%
! TTACATAGAACATACCTTAT+GGG + chr8_2:49293882-49293901 None:intergenic 25.0%
! TTTACATAGAACATACCTTA+TGG + chr8_2:49293883-49293902 None:intergenic 25.0%
!! TCTGAAAATCAATTTGTTTC+AGG - chr8_2:49293974-49293993 Msa1252370:intron 25.0%
!!! ATGTTGAGAATATTTTTTCG+GGG - chr8_2:49294008-49294027 Msa1252370:intron 25.0%
! TGTTGTGATTTAAATGAGTT+TGG - chr8_2:49294359-49294378 Msa1252370:CDS 25.0%
! TATATCGATGTAACAAAAAC+TGG + chr8_2:49294960-49294979 None:intergenic 25.0%
! TCAGAATACTTAAGTACAAA+AGG - chr8_2:49294981-49295000 Msa1252370:intron 25.0%
!!! TTATCTAGTTGATTTTTCTG+TGG + chr8_2:49295287-49295306 None:intergenic 25.0%
! AACTAGATAAATCTTTGATG+TGG - chr8_2:49295297-49295316 Msa1252370:intron 25.0%
! TAAATCTTTGATGTGGTATT+TGG - chr8_2:49295304-49295323 Msa1252370:intron 25.0%
!!! GATTTATTTATTTCTGGGAA+TGG - chr8_2:49295441-49295460 Msa1252370:intron 25.0%
!!! CTTTAATTTTTGTGGTTTTG+TGG - chr8_2:49295719-49295738 Msa1252370:intron 25.0%
!! TTTTTCCAAATTCGAAAACT+CGG + chr8_2:49295795-49295814 None:intergenic 25.0%
! CTAAAAACATACACAATCTA+AGG + chr8_2:49295972-49295991 None:intergenic 25.0%
! GACAAAATTTAACACGAAAT+AGG - chr8_2:49296312-49296331 Msa1252370:intron 25.0%
! AATTTCTGTCTTCTTTCTAA+TGG + chr8_2:49296480-49296499 None:intergenic 25.0%
!! GACAGAAATTAACTTGAAAT+AGG - chr8_2:49296490-49296509 Msa1252370:intron 25.0%
!! AATTAACTTGAAATAGGCTT+TGG - chr8_2:49296496-49296515 Msa1252370:intron 25.0%
!! ATTCAAAATTTTGTGATGCT+TGG - chr8_2:49297042-49297061 Msa1252370:intron 25.0%
!! ACATAAAGAACAAAAAGTGT+TGG - chr8_2:49297413-49297432 Msa1252370:intron 25.0%
!! GTCAATTTTTGAATCCTTTT+TGG - chr8_2:49297590-49297609 Msa1252370:intron 25.0%
! GTTGGTTAAATATACCAAAA+AGG + chr8_2:49297607-49297626 None:intergenic 25.0%
!! TCATTAGTGTGTATCATTTT+TGG - chr8_2:49297920-49297939 Msa1252370:intron 25.0%
!!! CATTAGTGTGTATCATTTTT+GGG - chr8_2:49297921-49297940 Msa1252370:intron 25.0%
!!! AGAAGCTGATAAAAGTTTTT+TGG - chr8_2:49298460-49298479 Msa1252370:CDS 25.0%
!!! GATGGATTAGAAAGTAAAAT+AGG + chr8_2:49298616-49298635 None:intergenic 25.0%
! TATTAAGCTTGACAAATTGT+TGG - chr8_2:49298642-49298661 Msa1252370:intron 25.0%
! ACTTAAAAAGACCAAAGATT+AGG + chr8_2:49298696-49298715 None:intergenic 25.0%
! ACACCTTCAATAAAAAATGT+CGG + chr8_2:49298821-49298840 None:intergenic 25.0%
! TTGTTAAAGCTATCTAAATC+TGG + chr8_2:49299034-49299053 None:intergenic 25.0%
!!! AGTAAGTTTTGAGGAATTTA+AGG - chr8_2:49299369-49299388 Msa1252370:intron 25.0%
! ATGTTTAAAGACAAATCTAC+GGG - chr8_2:49299472-49299491 Msa1252370:intron 25.0%
AAATTGCATGTCGTTAGAAA+AGG - chr8_2:49293127-49293146 Msa1252370:three_prime_UTR 30.0%
AATTGCATGTCGTTAGAAAA+GGG - chr8_2:49293128-49293147 Msa1252370:three_prime_UTR 30.0%
! TTAATTGAAAGTATGGGGTT+TGG - chr8_2:49293487-49293506 Msa1252370:three_prime_UTR 30.0%
! TAATTGAAAGTATGGGGTTT+GGG - chr8_2:49293488-49293507 Msa1252370:three_prime_UTR 30.0%
GTCTGTTTAAGAAGATACAT+AGG - chr8_2:49293613-49293632 Msa1252370:intron 30.0%
ATGGTTGAATTTGATCTGAA+TGG - chr8_2:49293639-49293658 Msa1252370:intron 30.0%
!!! TGTTGAGAATATTTTTTCGG+GGG - chr8_2:49294009-49294028 Msa1252370:intron 30.0%
CAACATTGAAGATTATGAAG+AGG - chr8_2:49294228-49294247 Msa1252370:intron 30.0%
TGTGATTTAAATGAGTTTGG+AGG - chr8_2:49294362-49294381 Msa1252370:CDS 30.0%
AGTTTGGAGGAATTTATTTC+AGG - chr8_2:49294375-49294394 Msa1252370:CDS 30.0%
!!! CAACTCTTTCAAGTTTTTCA+TGG - chr8_2:49294429-49294448 Msa1252370:CDS 30.0%
! AAGTTTTTCATGGCATACAA+AGG - chr8_2:49294439-49294458 Msa1252370:CDS 30.0%
!!! GGCATACAAAGGATTTTTTA+TGG - chr8_2:49294450-49294469 Msa1252370:CDS 30.0%
!! TAGTTCTGATTATTGTGATC+TGG - chr8_2:49294602-49294621 Msa1252370:intron 30.0%
!!! CATCTTTTTTCTCTTCTGTT+TGG - chr8_2:49295162-49295181 Msa1252370:intron 30.0%
GGTCTATGATGGTTAAAATT+TGG - chr8_2:49295387-49295406 Msa1252370:intron 30.0%
AACCATCATACACATAAGAA+AGG + chr8_2:49295483-49295502 None:intergenic 30.0%
TGTGTATGATGGTTCAAATT+TGG - chr8_2:49295489-49295508 Msa1252370:intron 30.0%
! GTGACATTGTAACTTTTGTA+AGG + chr8_2:49295658-49295677 None:intergenic 30.0%
!!! TGGTTTTGTGGTTAATGTTA+AGG - chr8_2:49295731-49295750 Msa1252370:intron 30.0%
!!! TGTTTTTAGTGAGTTGTGTA+TGG - chr8_2:49295983-49296002 Msa1252370:intron 30.0%
TCAATAGAAAGCTTGAACAA+AGG + chr8_2:49296014-49296033 None:intergenic 30.0%
!!! TGATAATTTTTGGTTTGTGG+TGG - chr8_2:49296031-49296050 Msa1252370:intron 30.0%
! TGGTTGTGTGATTTTGTTAA+AGG - chr8_2:49296130-49296149 Msa1252370:intron 30.0%
TACAAACCAATTGATAGAGA+AGG - chr8_2:49296161-49296180 Msa1252370:intron 30.0%
ACAAATCCTTCTCTATCAAT+TGG + chr8_2:49296170-49296189 None:intergenic 30.0%
! TTGATAGAGAAGGATTTGTT+TGG - chr8_2:49296171-49296190 Msa1252370:intron 30.0%
!! GGTGGAATTTTAAGAAATGT+TGG - chr8_2:49296198-49296217 Msa1252370:intron 30.0%
TAGACCTACTGTTAGAAAAA+TGG - chr8_2:49296233-49296252 Msa1252370:intron 30.0%
!! ATGACCATTTTTCTAACAGT+AGG + chr8_2:49296240-49296259 None:intergenic 30.0%
TTGAGTGAAAATTGAACCAT+TGG - chr8_2:49296283-49296302 Msa1252370:intron 30.0%
GTAAAAATCTGAACTGTTGT+TGG - chr8_2:49296402-49296421 Msa1252370:intron 30.0%
TTCATACATCAGTTTGCAAT+AGG - chr8_2:49296447-49296466 Msa1252370:intron 30.0%
AAAATCTGCTCTAATGTAGT+TGG - chr8_2:49296583-49296602 Msa1252370:intron 30.0%
! TCATAAACACATTTTACCCA+AGG + chr8_2:49296811-49296830 None:intergenic 30.0%
!!! GGCTTGCAATTTTTTCTTAT+TGG - chr8_2:49297088-49297107 Msa1252370:intron 30.0%
!!! TATGTTTGTTGTAGCACTTT+TGG - chr8_2:49297164-49297183 Msa1252370:intron 30.0%
!!! ATGTTTGTTGTAGCACTTTT+GGG - chr8_2:49297165-49297184 Msa1252370:intron 30.0%
!! CACATGTAAATAAAGGTGTT+TGG + chr8_2:49297372-49297391 None:intergenic 30.0%
!! GAAAGTGTTTCTTCAATTCA+TGG - chr8_2:49297477-49297496 Msa1252370:intron 30.0%
TGGTACTAATGTGCATTTAA+AGG + chr8_2:49297532-49297551 None:intergenic 30.0%
TAAGTCTACTTCAATTGAGA+GGG + chr8_2:49297560-49297579 None:intergenic 30.0%
ATAAGTCTACTTCAATTGAG+AGG + chr8_2:49297561-49297580 None:intergenic 30.0%
!!! AGTCATGATTGTGCTATTTT+TGG - chr8_2:49297897-49297916 Msa1252370:intron 30.0%
! GATATCACTGATAGTGTTAT+CGG - chr8_2:49298026-49298045 Msa1252370:intron 30.0%
! ATATCACTGATAGTGTTATC+GGG - chr8_2:49298027-49298046 Msa1252370:intron 30.0%
TATTGAAGACACTTTGTTGA+TGG - chr8_2:49298245-49298264 Msa1252370:intron 30.0%
ATTGAAGACACTTTGTTGAT+GGG - chr8_2:49298246-49298265 Msa1252370:intron 30.0%
AGAAAATCAATGTTGCAGTT+AGG + chr8_2:49298429-49298448 None:intergenic 30.0%
!!! AAAAGTTTTTTGGCTGCTAA+AGG - chr8_2:49298470-49298489 Msa1252370:CDS 30.0%
! AACAATTGCTCTTTTGATAC+GGG + chr8_2:49298525-49298544 None:intergenic 30.0%
! CAACAATTGCTCTTTTGATA+CGG + chr8_2:49298526-49298545 None:intergenic 30.0%
TAGAATTGGAGAAAATGTGA+AGG - chr8_2:49298556-49298575 Msa1252370:intron 30.0%
! GGAATGAAAGTGTATATAGT+TGG + chr8_2:49298594-49298613 None:intergenic 30.0%
TCAAGCTTAATATGAGAAGA+TGG + chr8_2:49298634-49298653 None:intergenic 30.0%
!!! TTTTTTATTGAAGGTGTGTC+TGG - chr8_2:49298824-49298843 Msa1252370:intron 30.0%
TCGCAGTTTATTATTAGTGT+TGG - chr8_2:49298891-49298910 Msa1252370:intron 30.0%
GAAGGAAATCAGGTTATATT+CGG + chr8_2:49298955-49298974 None:intergenic 30.0%
TATAACCTGATTTCCTTCAT+AGG - chr8_2:49298957-49298976 Msa1252370:intron 30.0%
! GGTTATTAATTGATGACAAC+AGG - chr8_2:49299110-49299129 Msa1252370:intron 30.0%
ACTGAATTTCAAATTGCATG+TGG - chr8_2:49299520-49299539 Msa1252370:intron 30.0%
CTGAATTTCAAATTGCATGT+GGG - chr8_2:49299521-49299540 Msa1252370:intron 30.0%
TGAATTTCAAATTGCATGTG+GGG - chr8_2:49299522-49299541 Msa1252370:intron 30.0%
TATGATATGTACTCAGAACT+TGG + chr8_2:49299555-49299574 None:intergenic 30.0%
! GAGAGTGTAAATGGAAAAAT+AGG - chr8_2:49299659-49299678 Msa1252370:five_prime_UTR 30.0%
AGAAGAGAGAAGAGAGAAAA+GGG - chr8_2:49293153-49293172 Msa1252370:three_prime_UTR 35.0%
ATTGAAATTGGGGCTGAAAA+GGG + chr8_2:49293409-49293428 None:intergenic 35.0%
AATTGAAATTGGGGCTGAAA+AGG + chr8_2:49293410-49293429 None:intergenic 35.0%
GAGGAAGAAACAAGAAGAAT+TGG - chr8_2:49293521-49293540 Msa1252370:three_prime_UTR 35.0%
GAAGAAACAAGAAGAATTGG+AGG - chr8_2:49293524-49293543 Msa1252370:three_prime_UTR 35.0%
TAAGAAGATACATAGGGACA+TGG - chr8_2:49293620-49293639 Msa1252370:intron 35.0%
AATTAAGTTCAGAGGAGTAG+AGG - chr8_2:49294192-49294211 Msa1252370:intron 35.0%
! TTATGAAGAGGATTTGAAGC+CGG - chr8_2:49294240-49294259 Msa1252370:intron 35.0%
CGTCTATGTTTCTTAATCTC+AGG - chr8_2:49294403-49294422 Msa1252370:CDS 35.0%
AAAAAACCTTACCATCGCTA+AGG + chr8_2:49294527-49294546 None:intergenic 35.0%
! CAAGTTTCAGTATTTTCGCA+TGG - chr8_2:49294805-49294824 Msa1252370:intron 35.0%
CGCATGGAGTATAAGAAAAT+TGG - chr8_2:49294821-49294840 Msa1252370:intron 35.0%
GCTTTGCTTATTATGCATTC+AGG - chr8_2:49294911-49294930 Msa1252370:CDS 35.0%
TTACACTTTAGTAGGAGATG+AGG + chr8_2:49295008-49295027 None:intergenic 35.0%
TGCCTTTCTTATGTGTATGA+TGG - chr8_2:49295478-49295497 Msa1252370:intron 35.0%
TGTTGTTGAAAGCTTTGCTT+TGG - chr8_2:49295515-49295534 Msa1252370:intron 35.0%
! TTCAACCGAGTTTTCGAATT+TGG - chr8_2:49295787-49295806 Msa1252370:intron 35.0%
!!! TGTGTGTAGAAGTACTTTTC+TGG - chr8_2:49295862-49295881 Msa1252370:intron 35.0%
GAGCATATTGTTGATCTGAA+AGG - chr8_2:49295944-49295963 Msa1252370:intron 35.0%
!!! TAATTTTTGGTTTGTGGTGG+AGG - chr8_2:49296034-49296053 Msa1252370:intron 35.0%
! GAGAAGGATTTGTTTGGTTA+TGG - chr8_2:49296177-49296196 Msa1252370:intron 35.0%
! AAGGATTTGTTTGGTTATGG+TGG - chr8_2:49296180-49296199 Msa1252370:intron 35.0%
ATTTAACACGAAATAGGCTC+TGG - chr8_2:49296318-49296337 Msa1252370:intron 35.0%
! AATCCTTGTCATTTCAATCC+GGG + chr8_2:49296639-49296658 None:intergenic 35.0%
! CAATCCTTGTCATTTCAATC+CGG + chr8_2:49296640-49296659 None:intergenic 35.0%
! AGAGTGTTCAGAATAAGTCA+TGG - chr8_2:49296758-49296777 Msa1252370:intron 35.0%
! AACACATTTTACCCAAGGTA+AGG + chr8_2:49296806-49296825 None:intergenic 35.0%
AACGAAGAACAACATAGAGA+TGG + chr8_2:49297194-49297213 None:intergenic 35.0%
ATGCTAGAACTGATGATTCA+TGG + chr8_2:49297224-49297243 None:intergenic 35.0%
! ATGAATCATCAGTTCTAGCA+TGG - chr8_2:49297223-49297242 Msa1252370:intron 35.0%
ACATAGTTGCAAAACTCCAA+GGG + chr8_2:49297299-49297318 None:intergenic 35.0%
AACATAGTTGCAAAACTCCA+AGG + chr8_2:49297300-49297319 None:intergenic 35.0%
!! AAGAACAAAAAGTGTTGGTC+AGG - chr8_2:49297418-49297437 Msa1252370:intron 35.0%
CTCACATGAAAGCTAACAAT+TGG - chr8_2:49297629-49297648 Msa1252370:intron 35.0%
TATCGCAGTTGAGTCTAAAT+TGG + chr8_2:49297978-49297997 None:intergenic 35.0%
! TATCACTGATAGTGTTATCG+GGG - chr8_2:49298028-49298047 Msa1252370:intron 35.0%
! ATGGAAGATTTTGCAGTTCT+AGG + chr8_2:49298184-49298203 None:intergenic 35.0%
AAAATCTTCCATTCAGTGGT+TGG - chr8_2:49298192-49298211 Msa1252370:intron 35.0%
AAATCTTCCATTCAGTGGTT+GGG - chr8_2:49298193-49298212 Msa1252370:intron 35.0%
ATGCAGCTCAATTCATTCAT+TGG - chr8_2:49298378-49298397 Msa1252370:intron 35.0%
!! ATTGGCTTGTGTAAGTTACA+AGG - chr8_2:49298396-49298415 Msa1252370:CDS 35.0%
GTTGACAAGAATGCTAGAAT+TGG - chr8_2:49298542-49298561 Msa1252370:intron 35.0%
AAACATAGATTGCCTTCTTG+CGG - chr8_2:49298747-49298766 Msa1252370:intron 35.0%
!!! GCACCGACATTTTTTATTGA+AGG - chr8_2:49298815-49298834 Msa1252370:intron 35.0%
TTTCCTTCATAGGAAAGCTT+TGG - chr8_2:49298967-49298986 Msa1252370:intron 35.0%
GATGAACTCTTCACATTTGA+AGG + chr8_2:49299157-49299176 None:intergenic 35.0%
GAATTTCAAATTGCATGTGG+GGG - chr8_2:49299523-49299542 Msa1252370:intron 35.0%
! GTACAGTTTGAGAGTGTAAA+TGG - chr8_2:49299650-49299669 Msa1252370:five_prime_UTR 35.0%
GAGAAGAGAGAAGAGAGAAA+AGG - chr8_2:49293152-49293171 Msa1252370:three_prime_UTR 40.0%
!!! TGCACCGATTTTAGAAGCAA+AGG - chr8_2:49293316-49293335 Msa1252370:three_prime_UTR 40.0%
GAATTTGATCTGAATGGTGC+TGG - chr8_2:49293645-49293664 Msa1252370:intron 40.0%
AGAGCTGCAATTAAGTTCAG+AGG - chr8_2:49294184-49294203 Msa1252370:intron 40.0%
! ATTTGAAGCCGGTGAGTTAT+GGG - chr8_2:49294251-49294270 Msa1252370:intron 40.0%
TATTCTTCCCCATAACTCAC+CGG + chr8_2:49294262-49294281 None:intergenic 40.0%
! TTTAAGAAGCGCAAGTCTCT+TGG - chr8_2:49294499-49294518 Msa1252370:intron 40.0%
! TGATGTTGGCTACTTTGTGA+TGG - chr8_2:49294887-49294906 Msa1252370:CDS 40.0%
ATTCAGGTGTCTTTCTTGCT+GGG - chr8_2:49294927-49294946 Msa1252370:intron 40.0%
!! TGGCTGTTTCTTCTTGTGAT+TGG - chr8_2:49295182-49295201 Msa1252370:intron 40.0%
ACCATCATAGACCAGTCATT+GGG + chr8_2:49295380-49295399 None:intergenic 40.0%
AACCATCATAGACCAGTCAT+TGG + chr8_2:49295381-49295400 None:intergenic 40.0%
! AATGTGACTTGCCAAACTCA+GGG - chr8_2:49295569-49295588 Msa1252370:intron 40.0%
TAAGAGCAAGAGAAGAGAAG+AGG - chr8_2:49296685-49296704 Msa1252370:intron 40.0%
AAGAGCAAGAGAAGAGAAGA+GGG - chr8_2:49296686-49296705 Msa1252370:intron 40.0%
!! CAATGGCAAGAGCTTTGAAT+TGG - chr8_2:49296721-49296740 Msa1252370:intron 40.0%
!! GGTAAGGCTCTAAGCTAAAA+AGG + chr8_2:49296790-49296809 None:intergenic 40.0%
! TTTAGCTTAGAGCCTTACCT+TGG - chr8_2:49296791-49296810 Msa1252370:intron 40.0%
TTAGCTTAGAGCCTTACCTT+GGG - chr8_2:49296792-49296811 Msa1252370:intron 40.0%
! TGTGTAAAGCTCTAATGCCA+AGG - chr8_2:49296921-49296940 Msa1252370:intron 40.0%
! GTGTAAAGCTCTAATGCCAA+GGG - chr8_2:49296922-49296941 Msa1252370:intron 40.0%
CATAGTTGCAAAACTCCAAG+GGG + chr8_2:49297298-49297317 None:intergenic 40.0%
CTTCAATTGAGAGGGAGTTA+TGG + chr8_2:49297552-49297571 None:intergenic 40.0%
! TTAGCTTTCATGTGAGCAGT+TGG + chr8_2:49297625-49297644 None:intergenic 40.0%
TCCACTTCACAACTTATCTG+CGG + chr8_2:49297690-49297709 None:intergenic 40.0%
CTGCAAAATCTTCCATTCAG+TGG - chr8_2:49298188-49298207 Msa1252370:intron 40.0%
GACCAAAGATTAGGAACAGA+GGG + chr8_2:49298687-49298706 None:intergenic 40.0%
AGACCAAAGATTAGGAACAG+AGG + chr8_2:49298688-49298707 None:intergenic 40.0%
GCTTTCCTATGAAGGAAATC+AGG + chr8_2:49298965-49298984 None:intergenic 40.0%
! TGACAACAGGCAGATTTTGA+TGG - chr8_2:49299123-49299142 Msa1252370:intron 40.0%
!! CAGGCAGATTTTGATGGAAA+TGG - chr8_2:49299129-49299148 Msa1252370:intron 40.0%
CAATGAGTGTTCACATGAGA+AGG - chr8_2:49299178-49299197 Msa1252370:intron 40.0%
TTATCCAAGTCGACATCGTT+GGG + chr8_2:49299236-49299255 None:intergenic 40.0%
!! ATGTCGACTTGGATAAGGTA+AGG - chr8_2:49299240-49299259 Msa1252370:intron 40.0%
AAGGCAATGATGAAGACAAG+AGG - chr8_2:49299388-49299407 Msa1252370:CDS 40.0%
TGATGAAGACAAGAGGAGAT+TGG - chr8_2:49299395-49299414 Msa1252370:CDS 40.0%
GACAAGAGGAGATTGGAAAA+TGG - chr8_2:49299402-49299421 Msa1252370:CDS 40.0%
GCATGCTGCTGAATAATTAG+TGG + chr8_2:49299600-49299619 None:intergenic 40.0%
AAGGGAACGAGAGAAAGAAG+AGG - chr8_2:49293171-49293190 Msa1252370:three_prime_UTR 45.0%
AGGGAACGAGAGAAAGAAGA+GGG - chr8_2:49293172-49293191 Msa1252370:three_prime_UTR 45.0%
AGAGAAAGAAGAGGGAACGA+AGG - chr8_2:49293180-49293199 Msa1252370:three_prime_UTR 45.0%
GAGAAAGAAGAGGGAACGAA+GGG - chr8_2:49293181-49293200 Msa1252370:three_prime_UTR 45.0%
ATTGGGGCTGAAAAGGGTTA+GGG + chr8_2:49293403-49293422 None:intergenic 45.0%
AATTGGGGCTGAAAAGGGTT+AGG + chr8_2:49293404-49293423 None:intergenic 45.0%
! ATGGGGTTTGGGTTTGCAAT+TGG - chr8_2:49293499-49293518 Msa1252370:three_prime_UTR 45.0%
! TTGATCTGAATGGTGCTGGA+TGG - chr8_2:49293649-49293668 Msa1252370:intron 45.0%
! GATTTGAAGCCGGTGAGTTA+TGG - chr8_2:49294250-49294269 Msa1252370:intron 45.0%
! TTTGAAGCCGGTGAGTTATG+GGG - chr8_2:49294252-49294271 Msa1252370:intron 45.0%
CATTCAGGTGTCTTTCTTGC+TGG - chr8_2:49294926-49294945 Msa1252370:intron 45.0%
AAGCATACACTCCCAATGAC+TGG - chr8_2:49295366-49295385 Msa1252370:intron 45.0%
!! TCCCAATGACTGGTCTATGA+TGG - chr8_2:49295376-49295395 Msa1252370:intron 45.0%
! GAATGTGACTTGCCAAACTC+AGG - chr8_2:49295568-49295587 Msa1252370:intron 45.0%
! ATGTGACTTGCCAAACTCAG+GGG - chr8_2:49295570-49295589 Msa1252370:intron 45.0%
! GAAATATTTGGTTCACCGCC+CGG - chr8_2:49296618-49296637 Msa1252370:intron 45.0%
! GAGTTGCTTTCTTCATCCCT+TGG + chr8_2:49296941-49296960 None:intergenic 45.0%
ATCATGTGTATGCAACCCCT+TGG - chr8_2:49297280-49297299 Msa1252370:intron 45.0%
CCACTTCACAACTTATCTGC+GGG + chr8_2:49297689-49297708 None:intergenic 45.0%
GCATCAAGCATCTTTGACAG+AGG + chr8_2:49298005-49298024 None:intergenic 45.0%
! ACTGATAGTGTTATCGGGGA+AGG - chr8_2:49298032-49298051 Msa1252370:intron 45.0%
CTGCATTCTTGCATATCAGG+AGG - chr8_2:49298216-49298235 Msa1252370:intron 45.0%
GATGGGCGCATATTATTACG+AGG - chr8_2:49298263-49298282 Msa1252370:intron 45.0%
GAGTTTCTGCCAATACCAAG+TGG + chr8_2:49298503-49298522 None:intergenic 45.0%
GAACAGAGGGAGTAGATGAT+GGG + chr8_2:49298674-49298693 None:intergenic 45.0%
CTCCCTCTGTTCCTAATCTT+TGG - chr8_2:49298682-49298701 Msa1252370:CDS 45.0%
CACACATGTTGCTGTCATGT+CGG + chr8_2:49298853-49298872 None:intergenic 45.0%
CAGCCAAAGCTTTCCTATGA+AGG + chr8_2:49298973-49298992 None:intergenic 45.0%
AGTGTTCACATGAGAAGGCT+TGG - chr8_2:49299183-49299202 Msa1252370:intron 45.0%
CTTATCCAAGTCGACATCGT+TGG + chr8_2:49299237-49299256 None:intergenic 45.0%
!! CAACGATGTCGACTTGGATA+AGG - chr8_2:49299235-49299254 Msa1252370:intron 45.0%
! GGATGGTCGAGTAAGTTTTG+AGG - chr8_2:49299360-49299379 Msa1252370:intron 45.0%
! CAAATTGCATGTGGGGGTAT+AGG - chr8_2:49299529-49299548 Msa1252370:intron 45.0%
CCTCACACTTTCTTCAGATG+AGG + chr8_2:49299685-49299704 None:intergenic 45.0%
! CCTCATCTGAAGAAAGTGTG+AGG - chr8_2:49299682-49299701 Msa1252370:five_prime_UTR 45.0%
!! ATATATATATATATATATCA+AGG - chr8_2:49295138-49295157 Msa1252370:intron 5.0%
AGAGAAACGGGAGAGGAAGA+AGG - chr8_2:49293075-49293094 Msa1252370:three_prime_UTR 50.0%
GAGAAACGGGAGAGGAAGAA+GGG - chr8_2:49293076-49293095 Msa1252370:three_prime_UTR 50.0%
! TCTCCCGTTCCTGTTTCTCT+CGG + chr8_2:49293208-49293227 None:intergenic 50.0%
AGAGAGAACGGAAGAGGAGA+GGG - chr8_2:49293243-49293262 Msa1252370:three_prime_UTR 50.0%
!! GTGCAGATCAGAGTGTTGGA+CGG + chr8_2:49293301-49293320 None:intergenic 50.0%
ATCGGTGCAGATCAGAGTGT+TGG + chr8_2:49293305-49293324 None:intergenic 50.0%
GGCTGAAAAGGGTTAGGGTT+TGG + chr8_2:49293398-49293417 None:intergenic 50.0%
! GGGTTTGGGTTTGCAATTGG+AGG - chr8_2:49293502-49293521 Msa1252370:three_prime_UTR 50.0%
CGGGGGTTATCAGTACTCTT+TGG - chr8_2:49294026-49294045 Msa1252370:intron 50.0%
! CTTTGGTTCATGCAGCTGCT+TGG - chr8_2:49294043-49294062 Msa1252370:intron 50.0%
! TTGGTGCCTTAGCGATGGTA+AGG - chr8_2:49294518-49294537 Msa1252370:intron 50.0%
TGCTAGTAGTCCCCTGAGTT+TGG + chr8_2:49295583-49295602 None:intergenic 50.0%
! GTTTGTGGTGGAGGAGTTTC+TGG - chr8_2:49296043-49296062 Msa1252370:intron 50.0%
! CCTTGTCATTTCAATCCGGG+CGG + chr8_2:49296636-49296655 None:intergenic 50.0%
AGAGAAGAGAAGAGGGCTGA+AGG - chr8_2:49296693-49296712 Msa1252370:intron 50.0%
GAGAAGAGAAGAGGGCTGAA+GGG - chr8_2:49296694-49296713 Msa1252370:intron 50.0%
TGAGTGAGAAATGGGAGGGA+GGG + chr8_2:49296870-49296889 None:intergenic 50.0%
TCCCTCCCATTTCTCACTCA+CGG - chr8_2:49296870-49296889 Msa1252370:intron 50.0%
ACGACCCGTGAGTGAGAAAT+GGG + chr8_2:49296878-49296897 None:intergenic 50.0%
AACGACCCGTGAGTGAGAAA+TGG + chr8_2:49296879-49296898 None:intergenic 50.0%
AGGCACAGAGAAGGATAGAC+TGG - chr8_2:49297438-49297457 Msa1252370:intron 50.0%
CCCGCAGATAAGTTGTGAAG+TGG - chr8_2:49297686-49297705 Msa1252370:intron 50.0%
CGGGGAAGGATGTGTGATTA+AGG - chr8_2:49298046-49298065 Msa1252370:intron 50.0%
AATGCAGCCCAACCACTGAA+TGG + chr8_2:49298203-49298222 None:intergenic 50.0%
GGGCTGCATTCTTGCATATC+AGG - chr8_2:49298213-49298232 Msa1252370:intron 50.0%
GCTAAAGGCAGTGTTCCACT+TGG - chr8_2:49298485-49298504 Msa1252370:CDS 50.0%
GGCAGTGTTCCACTTGGTAT+TGG - chr8_2:49298491-49298510 Msa1252370:CDS 50.0%
GGAACAGAGGGAGTAGATGA+TGG + chr8_2:49298675-49298694 None:intergenic 50.0%
TACACTACGATGCCGCAAGA+AGG + chr8_2:49298762-49298781 None:intergenic 50.0%
! CATTCCCAACGATGTCGACT+TGG - chr8_2:49299229-49299248 Msa1252370:intron 50.0%
AAACGGGAGAGGAAGAAGGG+TGG - chr8_2:49293079-49293098 Msa1252370:three_prime_UTR 55.0%
ACGAAGGGACCGAGAGAAAC+AGG - chr8_2:49293196-49293215 Msa1252370:three_prime_UTR 55.0%
GGGACCGAGAGAAACAGGAA+CGG - chr8_2:49293201-49293220 Msa1252370:three_prime_UTR 55.0%
GGACCGAGAGAAACAGGAAC+GGG - chr8_2:49293202-49293221 Msa1252370:three_prime_UTR 55.0%
GAGAGAAACAGGAACGGGAG+AGG - chr8_2:49293207-49293226 Msa1252370:three_prime_UTR 55.0%
ACAGGAACGGGAGAGGAAGA+AGG - chr8_2:49293214-49293233 Msa1252370:three_prime_UTR 55.0%
CAGGAACGGGAGAGGAAGAA+GGG - chr8_2:49293215-49293234 Msa1252370:three_prime_UTR 55.0%
AGAAGGGCGACGAGAGAGAA+CGG - chr8_2:49293231-49293250 Msa1252370:three_prime_UTR 55.0%
GAGAGAGAACGGAAGAGGAG+AGG - chr8_2:49293242-49293261 Msa1252370:three_prime_UTR 55.0%
!! GTCTCTTGGTGCCTTAGCGA+TGG - chr8_2:49294513-49294532 Msa1252370:intron 55.0%
CCGCCCGGATTGAAATGACA+AGG - chr8_2:49296633-49296652 Msa1252370:intron 55.0%
GAGGGCTGAAGGGATAGCAA+TGG - chr8_2:49296704-49296723 Msa1252370:intron 55.0%
TGAGAAATGGGAGGGAGGGA+GGG + chr8_2:49296866-49296885 None:intergenic 55.0%
GTGAGTGAGAAATGGGAGGG+AGG + chr8_2:49296871-49296890 None:intergenic 55.0%
CCCGTGAGTGAGAAATGGGA+GGG + chr8_2:49296874-49296893 None:intergenic 55.0%
CCCTCCCATTTCTCACTCAC+GGG - chr8_2:49296871-49296890 Msa1252370:intron 55.0%
ACCCGTGAGTGAGAAATGGG+AGG + chr8_2:49296875-49296894 None:intergenic 55.0%
! GTGTTGGTCAGGCACAGAGA+AGG - chr8_2:49297429-49297448 Msa1252370:intron 55.0%
GCGACGAGAGAGAACGGAAG+AGG - chr8_2:49293237-49293256 Msa1252370:three_prime_UTR 60.0%
!! GATCAGAGTGTTGGACGGCG+AGG + chr8_2:49293296-49293315 None:intergenic 60.0%
AAATGGGAGGGAGGGAGGGA+GGG + chr8_2:49296862-49296881 None:intergenic 60.0%
GTGAGAAATGGGAGGGAGGG+AGG + chr8_2:49296867-49296886 None:intergenic 60.0%
GTGTTGGACGGCGAGGTCGA+CGG + chr8_2:49293289-49293308 None:intergenic 65.0%
AATGGGAGGGAGGGAGGGAG+GGG + chr8_2:49296861-49296880 None:intergenic 65.0%
GAAATGGGAGGGAGGGAGGG+AGG + chr8_2:49296863-49296882 None:intergenic 65.0%
TTGGACGGCGAGGTCGACGG+CGG + chr8_2:49293286-49293305 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 49293070 49299858 49293070 ID=Msa1252370;Name=Msa1252370
chr8_2 mRNA 49293070 49299858 49293070 ID=Msa1252370-mRNA-1;Parent=Msa1252370;Name=Msa1252370-mRNA-1;_AED=0.32;_eAED=0.32;_QI=296|0.75|0.88|1|0.75|0.66|9|499|247
chr8_2 exon 49293070 49293567 49293070 ID=Msa1252370-mRNA-1:exon:14934;Parent=Msa1252370-mRNA-1
chr8_2 exon 49293667 49293796 49293667 ID=Msa1252370-mRNA-1:exon:14933;Parent=Msa1252370-mRNA-1
chr8_2 exon 49294351 49294470 49294351 ID=Msa1252370-mRNA-1:exon:14932;Parent=Msa1252370-mRNA-1
chr8_2 exon 49294644 49294742 49294644 ID=Msa1252370-mRNA-1:exon:14931;Parent=Msa1252370-mRNA-1
chr8_2 exon 49294861 49294944 49294861 ID=Msa1252370-mRNA-1:exon:14930;Parent=Msa1252370-mRNA-1
chr8_2 exon 49298394 49298531 49298394 ID=Msa1252370-mRNA-1:exon:14929;Parent=Msa1252370-mRNA-1
chr8_2 exon 49298667 49298754 49298667 ID=Msa1252370-mRNA-1:exon:14928;Parent=Msa1252370-mRNA-1
chr8_2 exon 49299383 49299487 49299383 ID=Msa1252370-mRNA-1:exon:14927;Parent=Msa1252370-mRNA-1
chr8_2 exon 49299582 49299858 49299582 ID=Msa1252370-mRNA-1:exon:14926;Parent=Msa1252370-mRNA-1
chr8_2 five_prime_UTR 49299582 49299858 49299582 ID=Msa1252370-mRNA-1:five_prime_utr;Parent=Msa1252370-mRNA-1
chr8_2 five_prime_UTR 49299469 49299487 49299469 ID=Msa1252370-mRNA-1:five_prime_utr;Parent=Msa1252370-mRNA-1
chr8_2 CDS 49299383 49299468 49299383 ID=Msa1252370-mRNA-1:cds;Parent=Msa1252370-mRNA-1
chr8_2 CDS 49298667 49298754 49298667 ID=Msa1252370-mRNA-1:cds;Parent=Msa1252370-mRNA-1
chr8_2 CDS 49298394 49298531 49298394 ID=Msa1252370-mRNA-1:cds;Parent=Msa1252370-mRNA-1
chr8_2 CDS 49294861 49294944 49294861 ID=Msa1252370-mRNA-1:cds;Parent=Msa1252370-mRNA-1
chr8_2 CDS 49294644 49294742 49294644 ID=Msa1252370-mRNA-1:cds;Parent=Msa1252370-mRNA-1
chr8_2 CDS 49294351 49294470 49294351 ID=Msa1252370-mRNA-1:cds;Parent=Msa1252370-mRNA-1
chr8_2 CDS 49293668 49293796 49293668 ID=Msa1252370-mRNA-1:cds;Parent=Msa1252370-mRNA-1
chr8_2 three_prime_UTR 49293667 49293667 49293667 ID=Msa1252370-mRNA-1:three_prime_utr;Parent=Msa1252370-mRNA-1
chr8_2 three_prime_UTR 49293070 49293567 49293070 ID=Msa1252370-mRNA-1:three_prime_utr;Parent=Msa1252370-mRNA-1
Gene Sequence

>Msa1252370

ATGTGTGTCTCCTTATTCAAAGAAAGCTTAATTGAAAGTATGGGGTTTGGGTTTGCAATTGGAGGAAGAAACAAGAAGAATTGGAGTGCATATGATAGAGCTGCAATTAAGTTCAGAGGAGTAGAGGCAGATATAAATTTCAACATTGAAGATTATGAAGAGGATTTGAAGCCGGTAGTTCGTCTATGTTTCTTAATCTCAGGTATCAACTCTTTCAAGTTTTTCATGGCATACAAAGGATTTTTTATGGTCAACGATGAGCTTCTTCTGCAAGTATTTAAGAAGCGCAAGTCTCTTGGTGCCTTAGCGATGACTCAACTGCGATATTTGCCTCTGTCAAAGATGCTTGATGCTGATATCACTGATAGTGTTATCGGGGAAGGATGTGTGATTAAGAACTGCAAAATCTTCCATTCAGTGGTTGGGCTGCATTCTTGCATATCAGGAGGTGCGATTATTGAAGACACTTTGTTGATGGGCGCATATTATTACGAGACAGAAGCTGATAAAAGTTTTTTGGCTGCTAAAGGCAGTGTTCCACTTGGTATTGGCAGAAACTCCCGTATCAAAAGAGCAATTGTTGACAAGAATGCTAGAATTGGAGAAAATGTGAAGGCAGATTTTGATGGAAATGGCACCTTCAAATGTGAAGAGTTCATCACAATGAGTGTTCACATGAGAAGGCTTGGAAATGATGAGCATCTCACAAAAGCATTCCCAACGATGTCGACTTGGATAAGGTAA
Protein sequence

>Msa1252370

MCVSLFKESLIESMGFGFAIGGRNKKNWSAYDRAAIKFRGVEADINFNIEDYEEDLKPVVRLCFLISGINSFKFFMAYKGFFMVNDELLLQVFKKRKSLGALAMTQLRYLPLSKMLDADITDSVIGEGCVIKNCKIFHSVVGLHSCISGGAIIEDTLLMGAYYYETEADKSFLAAKGSVPLGIGRNSRIKRAIVDKNARIGENVKADFDGNGTFKCEEFITMSVHMRRLGNDEHLTKAFPTMSTWIR*