AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1247750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1247750 MtrunA17_Chr5g0447341 95.050 101 5 0 117 217 377 477 8.44e-60 197
Msa1247750 MtrunA17_Chr3g0120471 81.731 104 16 1 114 217 373 473 3.22e-51 174
Msa1247750 MtrunA17_Chr7g0271011 48.000 100 52 0 117 216 398 497 1.85e-28 113
Msa1247750 MtrunA17_Chr3g0144731 46.729 107 53 1 117 219 23 129 2.07e-28 106
Msa1247750 MtrunA17_Chr3g0141761 44.444 99 55 0 117 215 392 490 1.18e-26 108
Msa1247750 MtrunA17_Chr4g0074531 50.000 104 52 0 113 216 379 482 3.16e-26 107
Msa1247750 MtrunA17_Chr4g0035171 44.860 107 55 1 117 219 390 496 1.41e-24 102
Msa1247750 MtrunA17_Chr4g0033371 96.000 50 2 0 217 266 496 545 5.37e-24 100
Msa1247750 MtrunA17_Chr4g0077071 88.000 50 6 0 117 166 32 81 8.10e-24 92.0
Msa1247750 MtrunA17_Chr6g0454161 84.314 51 8 0 163 213 125 175 4.30e-22 93.6
Msa1247750 MtrunA17_Chr5g0441571 46.602 103 45 3 37 137 178 272 1.08e-13 70.5
Msa1247750 MtrunA17_Chr5g0441651 49.351 77 38 1 17 93 163 238 5.50e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1247750 AT5G48300.1 84.158 101 16 0 117 217 382 482 2.04e-53 181
Msa1247750 AT1G27680.1 46.000 100 54 0 117 216 380 479 1.34e-27 111
Msa1247750 AT5G19220.1 47.115 104 55 0 113 216 380 483 1.21e-26 108
Msa1247750 AT2G21590.2 44.000 100 56 0 117 216 385 484 1.10e-24 103
Msa1247750 AT2G21590.3 44.000 100 56 0 117 216 385 484 1.10e-24 103
Msa1247750 AT2G21590.5 44.000 100 56 0 117 216 385 484 1.10e-24 103
Msa1247750 AT2G21590.4 44.000 100 56 0 117 216 385 484 1.10e-24 103
Msa1247750 AT2G21590.7 44.000 100 56 0 117 216 385 484 1.10e-24 103
Msa1247750 AT2G21590.1 44.000 100 56 0 117 216 385 484 1.10e-24 103
Msa1247750 AT2G21590.6 44.000 100 56 0 117 216 385 484 1.10e-24 103
Msa1247750 AT4G39210.2 46.000 100 54 0 117 216 383 482 6.12e-24 100
Msa1247750 AT4G39210.1 46.000 100 54 0 117 216 383 482 6.12e-24 100
Msa1247750 AT1G05610.2 50.000 104 50 1 115 216 340 443 3.57e-22 95.5
Msa1247750 AT1G05610.1 50.000 104 50 1 115 216 334 437 3.65e-22 95.5
Msa1247750 AT2G31500.1 73.810 42 11 0 217 258 494 535 1.91e-13 70.5

Find 110 sgRNAs with CRISPR-Local

Find 541 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAATTTGTCTTCAAATT+TGG 0.102206 8_2:+40982044 Msa1247750:three_prime_UTR
TGCCCTTCTGAGGGGCATTT+TGG 0.198411 8_2:+40972408 Msa1247750:five_prime_UTR
TTTAGAAGCAAAGGAAATTA+AGG 0.221632 8_2:+40972760 Msa1247750:five_prime_UTR
AGAAAGCTTAATTGAAAGTA+TGG 0.234946 8_2:+40972915 Msa1247750:five_prime_UTR
CTTCATGTCATGTGATAAAT+AGG 0.250728 8_2:-40972119 None:intergenic
AATTAAGCTTTCTTTGTATA+AGG 0.261829 8_2:-40972905 None:intergenic
TTGGGAATCGTACCTGAAAA+TGG 0.282701 8_2:-40972304 None:intergenic
GTACAGTTTGAGAGTGTAAA+TGG 0.292311 8_2:+40981877 Msa1247750:three_prime_UTR
GCATGAGTGATGAAGCAATA+TGG 0.296665 8_2:+40976334 Msa1247750:CDS
GGGCTGCATTCTTGCATATC+AGG 0.296848 8_2:+40977644 Msa1247750:CDS
CGGGGAAGGATGTGTGATTA+AGG 0.317043 8_2:+40977477 Msa1247750:CDS
ATGATACTTCATCTTGTATA+TGG 0.320820 8_2:-40972228 None:intergenic
ATTTCCTTTGCTTCTAAAAT+CGG 0.330480 8_2:-40972755 None:intergenic
TTAAGATGGTATTCAATTCA+TGG 0.339522 8_2:-40972265 None:intergenic
TGCCCCTCAGAAGGGCAAAA+AGG 0.366423 8_2:-40972402 None:intergenic
GACAAGAGGAGATTGGAAAA+TGG 0.375067 8_2:+40978833 Msa1247750:CDS
AGAAGAGAGAAGAGAGAAAA+GGG 0.376057 8_2:+40972588 Msa1247750:five_prime_UTR
GATATCACTGATAGTGTTAT+CGG 0.379793 8_2:+40977457 Msa1247750:CDS
CGTCTATGTTTCTTAATCTC+AGG 0.392267 8_2:+40973839 Msa1247750:CDS
TTACATAGAACATACCTTAT+GGG 0.397491 8_2:-40973315 None:intergenic
TATTGAAGACACTTTGTTGA+TGG 0.401901 8_2:+40977676 Msa1247750:CDS
GTTGACAAGAATGCTAGAAT+TGG 0.404186 8_2:+40977973 Msa1247750:CDS
GGTACGATTCCCAAGGAGAT+TGG 0.421271 8_2:+40972313 Msa1247750:five_prime_UTR
GGCAGTGTTCCAATTGGTAT+TGG 0.426491 8_2:+40977922 Msa1247750:CDS
ATCAAGATAGCCAATCTCCT+TGG 0.429268 8_2:-40972323 None:intergenic
ACGAAGGGACCGAGAGAAAC+GGG 0.430431 8_2:+40972631 Msa1247750:five_prime_UTR
CTCATGCTTTCTTCATCCCC+TGG 0.434251 8_2:-40976318 None:intergenic
GAGAAGAGAGAAGAGAGAAA+AGG 0.435926 8_2:+40972587 Msa1247750:five_prime_UTR
AAATCTTCCATTCAGTGGTT+GGG 0.441064 8_2:+40977624 Msa1247750:CDS
AAATTGCATGTCGTTAGAAA+AGG 0.441642 8_2:+40972562 Msa1247750:five_prime_UTR
ACGGGAACGGGAGAGGAAGA+AGG 0.442996 8_2:+40972649 Msa1247750:five_prime_UTR
CATGAGTGATGAAGCAATAT+GGG 0.445860 8_2:+40976335 Msa1247750:CDS
AACGAAGGGACCGAGAGAAA+CGG 0.452796 8_2:+40972630 Msa1247750:five_prime_UTR
GGGGTTGGGTTTGCAATTGG+AGG 0.457079 8_2:+40972937 Msa1247750:five_prime_UTR
CTTTGGTTCATGCGGCTGCT+TGG 0.457668 8_2:+40973479 Msa1247750:CDS
TGATGAAGACAAGAGGAGAT+TGG 0.460581 8_2:+40978826 Msa1247750:CDS
TCAAGATAGCCAATCTCCTT+GGG 0.464807 8_2:-40972322 None:intergenic
CTGAATTTCAAATTGCATGT+GGG 0.467504 8_2:+40978952 Msa1247750:three_prime_UTR
ATATCACTGATAGTGTTATC+GGG 0.469841 8_2:+40977458 Msa1247750:CDS
TCTCCCGTTCCCGTTTCTCT+CGG 0.471343 8_2:-40972640 None:intergenic
AAAATCTTCCATTCAGTGGT+TGG 0.473513 8_2:+40977623 Msa1247750:CDS
GAAAGCTTAATTGAAAGTAT+GGG 0.474338 8_2:+40972916 Msa1247750:five_prime_UTR
GGACCGAGAGAAACGGGAAC+GGG 0.475016 8_2:+40972637 Msa1247750:five_prime_UTR
AGAGAAACGGGAGAGGAAGA+AGG 0.475515 8_2:+40972510 Msa1247750:five_prime_UTR
GAGAGAAACGGGAACGGGAG+AGG 0.478946 8_2:+40972642 Msa1247750:five_prime_UTR
TATGATAATTTCATCCCATA+AGG 0.480276 8_2:+40973301 Msa1247750:exon
ATGTGTAAAGCTCTAATGCC+AGG 0.481314 8_2:+40976300 Msa1247750:CDS
GAGTTTCTGCCAATACCAAT+TGG 0.481399 8_2:-40977931 None:intergenic
AAGAAACAATGTTATTAAGA+TGG 0.483358 8_2:-40972279 None:intergenic
TTTAAGAAGCGCAAGTCTCT+TGG 0.484148 8_2:+40973935 Msa1247750:CDS
AGAGAGAACGGAAGAGGAGA+GGG 0.484152 8_2:+40972678 Msa1247750:five_prime_UTR
CGGGAACGGGAGAGGAAGAA+GGG 0.495297 8_2:+40972650 Msa1247750:five_prime_UTR
TTGGTGCCTTAGCGATGGTA+AGG 0.495404 8_2:+40973954 Msa1247750:CDS
TTCACATATAATAATAGGCA+AGG 0.500730 8_2:-40972451 None:intergenic
GGGGACGAGAGAAACGGGAG+AGG 0.500968 8_2:+40972503 Msa1247750:five_prime_UTR
TTATGAAGAGGATTTGAAGC+TGG 0.505390 8_2:+40973676 Msa1247750:CDS
GCGACGAGAGAGAACGGAAG+AGG 0.507684 8_2:+40972672 Msa1247750:five_prime_UTR
GCATGCTGCTGAATAATTAG+TGG 0.510173 8_2:-40981824 None:intergenic
ATTGAAGACACTTTGTTGAT+GGG 0.519372 8_2:+40977677 Msa1247750:CDS
AATGCAGCCCAACCACTGAA+TGG 0.520984 8_2:-40977631 None:intergenic
AGAAGGGCGACGAGAGAGAA+CGG 0.522224 8_2:+40972666 Msa1247750:five_prime_UTR
GCTAAAGGCAGTGTTCCAAT+TGG 0.523154 8_2:+40977916 Msa1247750:CDS
AAGGGAACGAGAGAAAGAAG+AGG 0.523683 8_2:+40972606 Msa1247750:five_prime_UTR
AAAGCTTAATTGAAAGTATG+GGG 0.524628 8_2:+40972917 Msa1247750:five_prime_UTR
AATTGCATGTCGTTAGAAAA+GGG 0.524800 8_2:+40972563 Msa1247750:five_prime_UTR
AAAACAGAAAACAAAAGAAG+GGG 0.527293 8_2:+40972483 Msa1247750:five_prime_UTR
AATGTTTAAAGACAAATCTA+CGG 0.528586 8_2:+40978902 Msa1247750:CDS
GAGAAACGGGAGAGGAAGAA+GGG 0.529600 8_2:+40972511 Msa1247750:five_prime_UTR
GAGAGAGAACGGAAGAGGAG+AGG 0.532551 8_2:+40972677 Msa1247750:five_prime_UTR
TCTGAGTACATATCATATCA+TGG 0.535942 8_2:+40978989 Msa1247750:three_prime_UTR
TTGGGTTTGCAATTGGAGGA+AGG 0.536610 8_2:+40972941 Msa1247750:five_prime_UTR
TCACATATAATAATAGGCAA+GGG 0.538159 8_2:-40972450 None:intergenic
ACTGAATTTCAAATTGCATG+TGG 0.539019 8_2:+40978951 Msa1247750:three_prime_UTR
ATCGGTGCAGATCAGAGTGT+TGG 0.543077 8_2:-40972737 None:intergenic
TTACCAAAATGCCCCTCAGA+AGG 0.546926 8_2:-40972411 None:intergenic
CAACATTGAAGATTATGAAG+AGG 0.549840 8_2:+40973664 Msa1247750:CDS
TATGATATGTACTCAGAACT+TGG 0.552496 8_2:-40978983 None:intergenic
GTGTTGGACGGCGAGGTCGA+CGG 0.559179 8_2:-40972721 None:intergenic
CTGCAAAATCTTCCATTCAG+TGG 0.561130 8_2:+40977619 Msa1247750:CDS
GTCTCTTGGTGCCTTAGCGA+TGG 0.562521 8_2:+40973949 Msa1247750:CDS
AGAGAAAGAAGAGGGAACGA+AGG 0.563011 8_2:+40972615 Msa1247750:five_prime_UTR
TCAGTACTCTTTGGTTCATG+CGG 0.565649 8_2:+40973471 Msa1247750:intron
CCTCACACTTTCTTCAGATG+AGG 0.567909 8_2:-40981909 None:intergenic
GGGACCGAGAGAAACGGGAA+CGG 0.573245 8_2:+40972636 Msa1247750:five_prime_UTR
CTGCATTCTTGCATATCAGG+AGG 0.573281 8_2:+40977647 Msa1247750:CDS
GAGAAAGAAGAGGGAACGAA+GGG 0.574865 8_2:+40972616 Msa1247750:five_prime_UTR
ACTGATAGTGTTATCGGGGA+AGG 0.575346 8_2:+40977463 Msa1247750:CDS
ATGTTTAAAGACAAATCTAC+GGG 0.579761 8_2:+40978903 Msa1247750:CDS
CACATATAATAATAGGCAAG+GGG 0.585101 8_2:-40972449 None:intergenic
AATTAAGTTCAGAGGAGTAG+AGG 0.591705 8_2:+40973628 Msa1247750:CDS
AAACGGGAGAGGAAGAAGGG+TGG 0.593784 8_2:+40972514 Msa1247750:five_prime_UTR
GATAAGAAAATGAATGTCCG+TGG 0.595900 8_2:+40972373 Msa1247750:five_prime_UTR
AGAGCTGCAATTAAGTTCAG+AGG 0.598621 8_2:+40973620 Msa1247750:CDS
TGTGTAAAGCTCTAATGCCA+GGG 0.600360 8_2:+40976301 Msa1247750:CDS
GCATCAAGCATCTTCGACAG+AGG 0.603100 8_2:-40977433 None:intergenic
AGGGAACGAGAGAAAGAAGA+GGG 0.605408 8_2:+40972607 Msa1247750:five_prime_UTR
AAGCTTAATTGAAAGTATGG+GGG 0.620557 8_2:+40972918 Msa1247750:five_prime_UTR
TACCAAAATGCCCCTCAGAA+GGG 0.620664 8_2:-40972410 None:intergenic
GATCAGAGTGTTGGACGGCG+AGG 0.636768 8_2:-40972728 None:intergenic
AAACAGAAAACAAAAGAAGG+GGG 0.637834 8_2:+40972484 Msa1247750:five_prime_UTR
AAGGCAATGATGAAGACAAG+AGG 0.640920 8_2:+40978819 Msa1247750:CDS
TGAATTTCAAATTGCATGTG+GGG 0.642872 8_2:+40978953 Msa1247750:three_prime_UTR
TAGAATTGGAGAAAATGTGA+AGG 0.647495 8_2:+40977987 Msa1247750:CDS
TTGGACGGCGAGGTCGACGG+CGG 0.673722 8_2:-40972718 None:intergenic
TATCACTGATAGTGTTATCG+GGG 0.674328 8_2:+40977459 Msa1247750:CDS
GTGCAGATCAGAGTGTTGGA+CGG 0.676123 8_2:-40972733 None:intergenic
CCTCATCTGAAGAAAGTGTG+AGG 0.684673 8_2:+40981909 Msa1247750:three_prime_UTR
GTGTAAAGCTCTAATGCCAG+GGG 0.691914 8_2:+40976302 Msa1247750:CDS
GAATTTCAAATTGCATGTGG+GGG 0.716284 8_2:+40978954 Msa1247750:three_prime_UTR
GATGGGCGCAGATTATTACG+AGG 0.733243 8_2:+40977694 Msa1247750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATATTTATGATGT+TGG + chr8_2:40974309-40974328 Msa1247750:intron 10.0%
!! CAATATATATATATATATCA+AGG + chr8_2:40974526-40974545 Msa1247750:intron 10.0%
!!! GTATTGATTTATTTATTTTT+GGG + chr8_2:40974824-40974843 Msa1247750:intron 10.0%
!!! TGGAATTTTAAAAAAATATT+TGG + chr8_2:40975489-40975508 Msa1247750:intron 10.0%
!!! TTTCTTCTATATTATTTTAA+TGG + chr8_2:40976413-40976432 Msa1247750:intron 10.0%
!!! AATAAGTTTTATATTTGTTT+TGG - chr8_2:40978441-40978460 None:intergenic 10.0%
!!! TATTTATTTTATTTTTCAAC+AGG - chr8_2:40979093-40979112 None:intergenic 10.0%
!!! TTAACTTTTTAAACTTTATT+CGG - chr8_2:40980307-40980326 None:intergenic 10.0%
!! AAGTTTAAAAAGTTAAAATT+AGG + chr8_2:40980311-40980330 Msa1247750:intron 10.0%
!!! TTTATTTTTTTAACTTTATC+TGG - chr8_2:40980391-40980410 None:intergenic 10.0%
!! AAAGTTAAAAAAACAAAATT+AGG + chr8_2:40980477-40980496 Msa1247750:intron 10.0%
!!! AAGCAAAATTTTATTTAAAA+AGG + chr8_2:40980826-40980845 Msa1247750:intron 10.0%
!!! ATAATAATTATTATTTGTTG+TGG - chr8_2:40981038-40981057 None:intergenic 10.0%
!!! AATATTAGTGTTTTTTTTTT+TGG - chr8_2:40981177-40981196 None:intergenic 10.0%
!!! ATTATTTCATTTTGTTTTAT+AGG - chr8_2:40981599-40981618 None:intergenic 10.0%
!! ATAAAAAATCAATATATCAA+TGG + chr8_2:40981714-40981733 Msa1247750:intron 10.0%
!! AAAAAAAAAAAGGAAAAAAG+TGG + chr8_2:40972163-40972182 Msa1247750:five_prime_UTR 15.0%
!!! TTCTTTTCACATATAATAAT+AGG - chr8_2:40972459-40972478 None:intergenic 15.0%
!! AAATTGAATGTAAAAATTGT+AGG + chr8_2:40973348-40973367 Msa1247750:intron 15.0%
!! AATTGAATGTAAAAATTGTA+GGG + chr8_2:40973349-40973368 Msa1247750:intron 15.0%
!!! TGTAATTGTTTTATGATTAA+TGG + chr8_2:40973387-40973406 Msa1247750:intron 15.0%
!! AAAAATATTCTCAACATTAA+AGG - chr8_2:40973441-40973460 None:intergenic 15.0%
!!! TAATGTTGAGAATATTTTTT+CGG + chr8_2:40973442-40973461 Msa1247750:intron 15.0%
!!! AAATTTCATTCATTCTTTTA+TGG + chr8_2:40973529-40973548 Msa1247750:intron 15.0%
!! AATAATTGATTGAAAACTAT+AGG - chr8_2:40973753-40973772 None:intergenic 15.0%
!!! GGTATTGATTTATTTATTTT+TGG + chr8_2:40974823-40974842 Msa1247750:intron 15.0%
!! AAAAAAATATTTGGTTGATT+TGG + chr8_2:40975498-40975517 Msa1247750:intron 15.0%
!! TTAATTCAATTATGTTATGA+TGG + chr8_2:40975905-40975924 Msa1247750:intron 15.0%
!! TATAATGAAAAAAATGAACT+TGG + chr8_2:40978520-40978539 Msa1247750:intron 15.0%
!!! ATCTAATATTGTTTTGTTAA+AGG + chr8_2:40978770-40978789 Msa1247750:intron 15.0%
!!! TTAAAATTAGTCATCTTTTT+AGG + chr8_2:40979935-40979954 Msa1247750:intron 15.0%
!!! GAAGTTTGTTATTATATTTT+AGG - chr8_2:40980165-40980184 None:intergenic 15.0%
!!! CATTATCGTAATTTTTTTAA+GGG - chr8_2:40980767-40980786 None:intergenic 15.0%
!!! ACATTATCGTAATTTTTTTA+AGG - chr8_2:40980768-40980787 None:intergenic 15.0%
!!! TTTTGTAAACTGTTAAAAAA+TGG - chr8_2:40980802-40980821 None:intergenic 15.0%
!!! TATAAAGAAATTTTGATGAT+CGG + chr8_2:40980929-40980948 Msa1247750:intron 15.0%
!!! TTAATTTTTTGGTGAAAAAA+AGG + chr8_2:40980974-40980993 Msa1247750:intron 15.0%
!! AGTTTAAAAAATAATAAAGG+AGG - chr8_2:40981122-40981141 None:intergenic 15.0%
!!! AATTAATTTGTCTTCAAATT+TGG + chr8_2:40982044-40982063 Msa1247750:three_prime_UTR 15.0%
!! AAGAAACAATGTTATTAAGA+TGG - chr8_2:40972282-40972301 None:intergenic 20.0%
!! AAAAAACAGAAAACAAAAGA+AGG + chr8_2:40972481-40972500 Msa1247750:five_prime_UTR 20.0%
!! AAAAACAGAAAACAAAAGAA+GGG + chr8_2:40972482-40972501 Msa1247750:five_prime_UTR 20.0%
!! TTCATTGAGAAATTGAAATT+GGG - chr8_2:40972855-40972874 None:intergenic 20.0%
!! AATTTCAATTTCTCAATGAA+GGG + chr8_2:40972855-40972874 Msa1247750:intron 20.0%
!! AATTAAGCTTTCTTTGTATA+AGG - chr8_2:40972908-40972927 None:intergenic 20.0%
!!! AATGTTGAGAATATTTTTTC+GGG + chr8_2:40973443-40973462 Msa1247750:intron 20.0%
!! CAATTCAAGATACAAAAAAA+AGG - chr8_2:40973777-40973796 None:intergenic 20.0%
!!! AATTTTAACTTCAATGTGAA+TGG + chr8_2:40974158-40974177 Msa1247750:intron 20.0%
!! TAAAAAACTTACACTTTAGT+AGG - chr8_2:40974452-40974471 None:intergenic 20.0%
!! ATCAATTGAAGTCAATAATT+TGG - chr8_2:40974491-40974510 None:intergenic 20.0%
!!! ATCTAAATTCTAAAGCATTA+TGG - chr8_2:40974619-40974638 None:intergenic 20.0%
!!! GATTTATTTATTTTTGGGAA+TGG + chr8_2:40974829-40974848 Msa1247750:intron 20.0%
!! TAAAATCTAATTGATACTGA+TGG + chr8_2:40975009-40975028 Msa1247750:intron 20.0%
!!! TTAACAGACTTTAATTTTTG+TGG + chr8_2:40975099-40975118 Msa1247750:intron 20.0%
!! CGAATTTGGAAAAAAAAATT+TGG + chr8_2:40975189-40975208 Msa1247750:intron 20.0%
!!! TGCTTTCTATTGATAATTTT+TGG + chr8_2:40975409-40975428 Msa1247750:intron 20.0%
!!! TATTGATAATTTTTGGTTTG+TGG + chr8_2:40975416-40975435 Msa1247750:intron 20.0%
!!! TTAGTTATTCTTTTGAGTTT+TGG + chr8_2:40975469-40975488 Msa1247750:intron 20.0%
!!! AAATTTTGTCTATTTTCCAA+TGG - chr8_2:40975690-40975709 None:intergenic 20.0%
!! AATGTTCATGTTGAAATATT+TGG + chr8_2:40975986-40976005 Msa1247750:intron 20.0%
!! TTCTATTCACATGTAAATAA+AGG - chr8_2:40976810-40976829 None:intergenic 20.0%
!! TTGTTCTTTATGTTATGTAA+TGG - chr8_2:40976837-40976856 None:intergenic 20.0%
!! TAAGAATTGATCAAAATAGA+AGG + chr8_2:40977190-40977209 Msa1247750:intron 20.0%
!! AGATGTCAAATATGATTAAA+TGG + chr8_2:40977555-40977574 Msa1247750:intron 20.0%
!!! ATGGATTAGAAAGTAAAATA+GGG - chr8_2:40978046-40978065 None:intergenic 20.0%
!!! ATATTTGTTTTGGATAATGA+TGG - chr8_2:40978431-40978450 None:intergenic 20.0%
!!! AATATTGTTTTGTTAAAGGA+TGG + chr8_2:40978774-40978793 Msa1247750:intron 20.0%
!! AATGTTTAAAGACAAATCTA+CGG + chr8_2:40978902-40978921 Msa1247750:CDS 20.0%
!! ATGAAAAGAATATAAAGGAA+GGG - chr8_2:40979552-40979571 None:intergenic 20.0%
!! AATGAAAAGAATATAAAGGA+AGG - chr8_2:40979553-40979572 None:intergenic 20.0%
!! AAGGAATGAAAAGAATATAA+AGG - chr8_2:40979557-40979576 None:intergenic 20.0%
!!! GAAATATTTTCAATTGAAGA+AGG - chr8_2:40979576-40979595 None:intergenic 20.0%
!!! AAAACTAAAAGGATTTGTTT+GGG - chr8_2:40979820-40979839 None:intergenic 20.0%
!!! AAAAACTAAAAGGATTTGTT+TGG - chr8_2:40979821-40979840 None:intergenic 20.0%
!!! AAAGATGACTAATTTTAAGT+GGG - chr8_2:40979933-40979952 None:intergenic 20.0%
!!! AAAAGATGACTAATTTTAAG+TGG - chr8_2:40979934-40979953 None:intergenic 20.0%
!! TGAAACTTAAATGATTACTT+TGG + chr8_2:40980100-40980119 Msa1247750:intron 20.0%
!! GAAACTTAAATGATTACTTT+GGG + chr8_2:40980101-40980120 Msa1247750:intron 20.0%
!!! TTTATTATGATGAGTGTTTT+TGG + chr8_2:40980243-40980262 Msa1247750:intron 20.0%
!!! ACGTACTATGATTTTATTAT+TGG - chr8_2:40980896-40980915 None:intergenic 20.0%
!! AATAATAAAATCATAGTACG+TGG + chr8_2:40980895-40980914 Msa1247750:intron 20.0%
!! CATTCATTAAATGATGTATT+TGG - chr8_2:40981405-40981424 None:intergenic 20.0%
!! AATAATATTGTTTAATCTGC+AGG + chr8_2:40981613-40981632 Msa1247750:intron 20.0%
! TCTGCAAGCAAAAAAAAAAA+AGG + chr8_2:40972153-40972172 Msa1247750:five_prime_UTR 25.0%
! AAAAAAAGGAAAAAAGTGGT+CGG + chr8_2:40972167-40972186 Msa1247750:five_prime_UTR 25.0%
! ATGATACTTCATCTTGTATA+TGG - chr8_2:40972231-40972250 None:intergenic 25.0%
! TTAAGATGGTATTCAATTCA+TGG - chr8_2:40972268-40972287 None:intergenic 25.0%
!!! ATTGTTTCTTATCCATTTTC+AGG + chr8_2:40972292-40972311 Msa1247750:five_prime_UTR 25.0%
!!! CATTTTGGTAAATTGGTAAT+TGG + chr8_2:40972423-40972442 Msa1247750:five_prime_UTR 25.0%
! TCACATATAATAATAGGCAA+GGG - chr8_2:40972453-40972472 None:intergenic 25.0%
! TTCACATATAATAATAGGCA+AGG - chr8_2:40972454-40972473 None:intergenic 25.0%
! AAAACAGAAAACAAAAGAAG+GGG + chr8_2:40972483-40972502 Msa1247750:five_prime_UTR 25.0%
!!! ATTTCCTTTGCTTCTAAAAT+CGG - chr8_2:40972758-40972777 None:intergenic 25.0%
! TTTAGAAGCAAAGGAAATTA+AGG + chr8_2:40972760-40972779 Msa1247750:five_prime_UTR 25.0%
! TCATTGAGAAATTGAAATTG+GGG - chr8_2:40972854-40972873 None:intergenic 25.0%
! CTTCATTGAGAAATTGAAAT+TGG - chr8_2:40972856-40972875 None:intergenic 25.0%
! CAATTTCAATTTCTCAATGA+AGG + chr8_2:40972854-40972873 Msa1247750:intron 25.0%
! AGAAAGCTTAATTGAAAGTA+TGG + chr8_2:40972915-40972934 Msa1247750:five_prime_UTR 25.0%
!! GAAAGCTTAATTGAAAGTAT+GGG + chr8_2:40972916-40972935 Msa1247750:five_prime_UTR 25.0%
!! AAAGCTTAATTGAAAGTATG+GGG + chr8_2:40972917-40972936 Msa1247750:five_prime_UTR 25.0%
! TGTAAATCATTTCTGTTTGA+TGG + chr8_2:40973000-40973019 Msa1247750:intron 25.0%
! TCTGTTTAAGAAGATACATA+GGG + chr8_2:40973049-40973068 Msa1247750:intron 25.0%
! AAATCAGATACAAAGGAAAA+TGG - chr8_2:40973136-40973155 None:intergenic 25.0%
!! ATTTTCCTTTGTATCTGATT+TGG + chr8_2:40973135-40973154 Msa1247750:intron 25.0%
!! TTTTACCAAATCAGATACAA+AGG - chr8_2:40973143-40973162 None:intergenic 25.0%
!! AAAAAGCTATTTCACAATAC+TGG - chr8_2:40973171-40973190 None:intergenic 25.0%
! TATGATAATTTCATCCCATA+AGG + chr8_2:40973301-40973320 Msa1247750:exon 25.0%
! TTACATAGAACATACCTTAT+GGG - chr8_2:40973318-40973337 None:intergenic 25.0%
! TTTACATAGAACATACCTTA+TGG - chr8_2:40973319-40973338 None:intergenic 25.0%
!! TCTGAAAATCAATTTGTTTC+AGG + chr8_2:40973410-40973429 Msa1247750:intron 25.0%
!!! ATGTTGAGAATATTTTTTCG+GGG + chr8_2:40973444-40973463 Msa1247750:intron 25.0%
! TGTTGTGATTTAAATGAGTT+TGG + chr8_2:40973795-40973814 Msa1247750:intron 25.0%
!! TTATTCCAGTTTTTGTTACA+TGG + chr8_2:40974388-40974407 Msa1247750:intron 25.0%
! TATATCCATGTAACAAAAAC+TGG - chr8_2:40974396-40974415 None:intergenic 25.0%
!!! AAGTTTTTTAACACTGTCAT+AGG + chr8_2:40974462-40974481 Msa1247750:intron 25.0%
!! GTTATTGAAAGTTTTGCAAA+TGG + chr8_2:40974802-40974821 Msa1247750:intron 25.0%
!!! CTTTAATTTTTGTGGTTTTG+TGG + chr8_2:40975107-40975126 Msa1247750:intron 25.0%
!! TTCAACTAAGTTTTCGAATT+TGG + chr8_2:40975175-40975194 Msa1247750:intron 25.0%
! CTAAAAACATACACAATCTA+AGG - chr8_2:40975360-40975379 None:intergenic 25.0%
! ACAAATTCTTCTCTATCAAT+TGG - chr8_2:40975558-40975577 None:intergenic 25.0%
!! TTGATAGAGAAGAATTTGTT+TGG + chr8_2:40975559-40975578 Msa1247750:intron 25.0%
! GACAAAATTTAACACGAAAT+AGG + chr8_2:40975700-40975719 Msa1247750:intron 25.0%
! AATTTCTGTCTTCTTTCTAA+TGG - chr8_2:40975860-40975879 None:intergenic 25.0%
!! GACAGAAATTAACTTGAAAT+AGG + chr8_2:40975870-40975889 Msa1247750:intron 25.0%
!! AATTAACTTGAAATAGGCTT+TGG + chr8_2:40975876-40975895 Msa1247750:intron 25.0%
!! ATTCAAAATTTTGTGATGCT+TGG + chr8_2:40976473-40976492 Msa1247750:intron 25.0%
! AAAACGAAAGAAAAGAAACA+TGG - chr8_2:40976747-40976766 None:intergenic 25.0%
!! ACATAAAGAACAAAAAGTGT+TGG + chr8_2:40976844-40976863 Msa1247750:intron 25.0%
!! GTCAATTTTTGAATCCTTTT+TGG + chr8_2:40977021-40977040 Msa1247750:intron 25.0%
! GTTGGTTAAATATACCAAAA+AGG - chr8_2:40977038-40977057 None:intergenic 25.0%
!!! AGTCATGATTGTGTTATTTT+TGG + chr8_2:40977328-40977347 Msa1247750:intron 25.0%
!! TCATTAGTGTGTATCATTTT+TGG + chr8_2:40977351-40977370 Msa1247750:intron 25.0%
!!! CATTAGTGTGTATCATTTTT+GGG + chr8_2:40977352-40977371 Msa1247750:intron 25.0%
!!! AGAAGCTGATAAAAGTTTTT+TGG + chr8_2:40977891-40977910 Msa1247750:CDS 25.0%
!!! GATGGATTAGAAAGTAAAAT+AGG - chr8_2:40978047-40978066 None:intergenic 25.0%
! TATTAAGCTTGACAAATTGT+TGG + chr8_2:40978073-40978092 Msa1247750:intron 25.0%
!! ACTTTAAAAGACCAAAGATT+AGG - chr8_2:40978127-40978146 None:intergenic 25.0%
! ACACCTTCAATAAAAAATGT+CGG - chr8_2:40978252-40978271 None:intergenic 25.0%
! TTGTTAAAGCTATCTAAATC+TGG - chr8_2:40978465-40978484 None:intergenic 25.0%
!!! AGTAAGTTTTGAGGAATTTA+AGG + chr8_2:40978800-40978819 Msa1247750:CDS 25.0%
! ATGTTTAAAGACAAATCTAC+GGG + chr8_2:40978903-40978922 Msa1247750:CDS 25.0%
! TGTTATACATTAGCAAAATG+GGG - chr8_2:40979164-40979183 None:intergenic 25.0%
! GTGTTATACATTAGCAAAAT+GGG - chr8_2:40979165-40979184 None:intergenic 25.0%
! TGTGTTATACATTAGCAAAA+TGG - chr8_2:40979166-40979185 None:intergenic 25.0%
!!! CAGATTTGTTATCATTTGTA+CGG - chr8_2:40979259-40979278 None:intergenic 25.0%
!!! ACTTGTTTTCTGTTAGAAAT+TGG - chr8_2:40979411-40979430 None:intergenic 25.0%
!! AATTATCGAAGAACCATTTT+CGG - chr8_2:40979450-40979469 None:intergenic 25.0%
!!! TGGCAACATAAATTTTTTCA+TGG - chr8_2:40979644-40979663 None:intergenic 25.0%
! GAAACGATTCAAAAACTAAA+AGG - chr8_2:40980033-40980052 None:intergenic 25.0%
! CATATTGTAGATAACATAGT+TGG + chr8_2:40979859-40979878 Msa1247750:intron 25.0%
!!! ATTAGTCATCTTTTTAGGTA+TGG + chr8_2:40979940-40979959 Msa1247750:intron 25.0%
! GAAACGATTCAAAAACTAAA+AGG + chr8_2:40980033-40980052 Msa1247750:intron 25.0%
! TTTAGGTCAAATGCATTTAA+AGG - chr8_2:40980148-40980167 None:intergenic 25.0%
!! CTAAACTTTTCGCTAATTAT+CGG - chr8_2:40980447-40980466 None:intergenic 25.0%
!!! AGCATTTCCCTTTTTTTAAT+TGG - chr8_2:40980572-40980591 None:intergenic 25.0%
! CTCATTAACTTATGTCTTAA+GGG - chr8_2:40980603-40980622 None:intergenic 25.0%
! ACTCATTAACTTATGTCTTA+AGG - chr8_2:40980604-40980623 None:intergenic 25.0%
! ATAAGTTAATGAGTCAAAAG+TGG + chr8_2:40980610-40980629 Msa1247750:intron 25.0%
!!! CAAGAGAATATTTCTACTTT+TGG + chr8_2:40980703-40980722 Msa1247750:intron 25.0%
!!! TATCGTAATTTTTTTAAGGG+TGG - chr8_2:40980764-40980783 None:intergenic 25.0%
!!! ATTATTATTTGTTGTGGTGT+TGG - chr8_2:40981032-40981051 None:intergenic 25.0%
!! TTAGTAGTAACTTTGAAAGT+TGG - chr8_2:40981084-40981103 None:intergenic 25.0%
!! TTTTTGCTAATAATAGTGAC+CGG - chr8_2:40981331-40981350 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG + chr8_2:40981366-40981385 Msa1247750:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr8_2:40981441-40981460 Msa1247750:intron 25.0%
! ATAAATTAATATACACCCTC+CGG - chr8_2:40981463-40981482 None:intergenic 25.0%
!!! CATTTTGTTTTATAGGCTTT+TGG - chr8_2:40981592-40981611 None:intergenic 25.0%
! ATCTGCATTATATGATATGA+TGG - chr8_2:40981797-40981816 None:intergenic 25.0%
CTTCATGTCATGTGATAAAT+AGG - chr8_2:40972122-40972141 None:intergenic 30.0%
! ATGTTTTCGGAACACAAAAA+GGG - chr8_2:40972205-40972224 None:intergenic 30.0%
! AATGTTTTCGGAACACAAAA+AGG - chr8_2:40972206-40972225 None:intergenic 30.0%
! TTTTTGTGTTCCGAAAACAT+TGG + chr8_2:40972205-40972224 Msa1247750:five_prime_UTR 30.0%
! TTGTATATGGCCAATGTTTT+CGG - chr8_2:40972218-40972237 None:intergenic 30.0%
CACATATAATAATAGGCAAG+GGG - chr8_2:40972452-40972471 None:intergenic 30.0%
AAACAGAAAACAAAAGAAGG+GGG + chr8_2:40972484-40972503 Msa1247750:five_prime_UTR 30.0%
AAATTGCATGTCGTTAGAAA+AGG + chr8_2:40972562-40972581 Msa1247750:five_prime_UTR 30.0%
AATTGCATGTCGTTAGAAAA+GGG + chr8_2:40972563-40972582 Msa1247750:five_prime_UTR 30.0%
! AAGCTTAATTGAAAGTATGG+GGG + chr8_2:40972918-40972937 Msa1247750:five_prime_UTR 30.0%
GTCTGTTTAAGAAGATACAT+AGG + chr8_2:40973048-40973067 Msa1247750:intron 30.0%
ATGGTTGAATTTGATCTGAA+TGG + chr8_2:40973074-40973093 Msa1247750:intron 30.0%
!!! TGTTGAGAATATTTTTTCGG+GGG + chr8_2:40973445-40973464 Msa1247750:intron 30.0%
CAACATTGAAGATTATGAAG+AGG + chr8_2:40973664-40973683 Msa1247750:CDS 30.0%
TGTGATTTAAATGAGTTTGG+AGG + chr8_2:40973798-40973817 Msa1247750:intron 30.0%
AGTTTGGAGGAATTAATTTC+AGG + chr8_2:40973811-40973830 Msa1247750:intron 30.0%
!!! CAACTCTTTCAAGTTTTTCA+TGG + chr8_2:40973865-40973884 Msa1247750:CDS 30.0%
! AAGTTTTTCATGGCATACAA+AGG + chr8_2:40973875-40973894 Msa1247750:CDS 30.0%
!!! GGCATACAAAGGATTTTTTA+TGG + chr8_2:40973886-40973905 Msa1247750:CDS 30.0%
!! TAGTTCTGATTATTGTGATC+TGG + chr8_2:40974039-40974058 Msa1247750:intron 30.0%
! CAAGTTTCAATATTTTCGCA+TGG + chr8_2:40974241-40974260 Msa1247750:intron 30.0%
!! GCTTTGTTTATTATGCATTC+AGG + chr8_2:40974347-40974366 Msa1247750:intron 30.0%
!!! CATCTTTTTTCTCTTCTGTT+TGG + chr8_2:40974550-40974569 Msa1247750:intron 30.0%
!! TTATCTAGCTGATTTTTCTG+TGG - chr8_2:40974675-40974694 None:intergenic 30.0%
TAAGTCTTTGATGTGGTATT+TGG + chr8_2:40974692-40974711 Msa1247750:intron 30.0%
GGTCTATGATGGTTAAAATT+TGG + chr8_2:40974775-40974794 Msa1247750:intron 30.0%
AACCATCATACACATAAGAA+AGG - chr8_2:40974871-40974890 None:intergenic 30.0%
TGTGTATGATGGTTCAAATT+TGG + chr8_2:40974877-40974896 Msa1247750:intron 30.0%
! GTGACATTGTAACTTTTGTA+AGG - chr8_2:40975046-40975065 None:intergenic 30.0%
!!! TGGTTTTGTGGTTAATGTTA+AGG + chr8_2:40975119-40975138 Msa1247750:intron 30.0%
! TCAATAGAAAGCATGAACAA+AGG - chr8_2:40975402-40975421 None:intergenic 30.0%
!!! TGATAATTTTTGGTTTGTGG+TGG + chr8_2:40975419-40975438 Msa1247750:intron 30.0%
! TGGTTGTGTGATTTTGTTAA+AGG + chr8_2:40975518-40975537 Msa1247750:intron 30.0%
! GAGAAGAATTTGTTTGGTTA+TGG + chr8_2:40975565-40975584 Msa1247750:intron 30.0%
! AAGAATTTGTTTGGTTATGG+TGG + chr8_2:40975568-40975587 Msa1247750:intron 30.0%
!! GGTGGAATTTTAAGAAATGT+TGG + chr8_2:40975586-40975605 Msa1247750:intron 30.0%
TAGACCTACTGTTAGAAAAA+TGG + chr8_2:40975621-40975640 Msa1247750:intron 30.0%
!! ATGACCATTTTTCTAACAGT+AGG - chr8_2:40975628-40975647 None:intergenic 30.0%
TTGAGTGAAAATTGAACCAT+TGG + chr8_2:40975671-40975690 Msa1247750:intron 30.0%
GTAAAAATCTGAACTGTTGT+TGG + chr8_2:40975782-40975801 Msa1247750:intron 30.0%
TTCATACATCAGTTTGCAAT+AGG + chr8_2:40975827-40975846 Msa1247750:intron 30.0%
AAAATCTGCTCTAATGTAGT+TGG + chr8_2:40975963-40975982 Msa1247750:intron 30.0%
AATCCTTATCATTTCAATCC+GGG - chr8_2:40976019-40976038 None:intergenic 30.0%
CAATCCTTATCATTTCAATC+CGG - chr8_2:40976020-40976039 None:intergenic 30.0%
! TCATAAACACATTTTACCCA+AGG - chr8_2:40976191-40976210 None:intergenic 30.0%
!!! GGCTTGCAATTTTTTCTTAT+TGG + chr8_2:40976519-40976538 Msa1247750:intron 30.0%
!! CACATGTAAATAAAGGTGTT+TGG - chr8_2:40976803-40976822 None:intergenic 30.0%
!! GAAAGTGTTTCTTCAATTCA+TGG + chr8_2:40976908-40976927 Msa1247750:intron 30.0%
TGGTACTAATGTGCATTTAA+AGG - chr8_2:40976963-40976982 None:intergenic 30.0%
TAAGTCTACTTCAATTGAGA+GGG - chr8_2:40976991-40977010 None:intergenic 30.0%
ATAAGTCTACTTCAATTGAG+AGG - chr8_2:40976992-40977011 None:intergenic 30.0%
! GATATCACTGATAGTGTTAT+CGG + chr8_2:40977457-40977476 Msa1247750:CDS 30.0%
! ATATCACTGATAGTGTTATC+GGG + chr8_2:40977458-40977477 Msa1247750:CDS 30.0%
TATTGAAGACACTTTGTTGA+TGG + chr8_2:40977676-40977695 Msa1247750:CDS 30.0%
ATTGAAGACACTTTGTTGAT+GGG + chr8_2:40977677-40977696 Msa1247750:CDS 30.0%
!!! AAAAGTTTTTTGGCTGCTAA+AGG + chr8_2:40977901-40977920 Msa1247750:CDS 30.0%
! AACAATTGCTCTTTTGATAC+GGG - chr8_2:40977956-40977975 None:intergenic 30.0%
! CAACAATTGCTCTTTTGATA+CGG - chr8_2:40977957-40977976 None:intergenic 30.0%
TAGAATTGGAGAAAATGTGA+AGG + chr8_2:40977987-40978006 Msa1247750:CDS 30.0%
! GGAATGAAAGTGTATATAGT+TGG - chr8_2:40978025-40978044 None:intergenic 30.0%
TCAAGCTTAATATGAGAAGA+TGG - chr8_2:40978065-40978084 None:intergenic 30.0%
!!! TTTTTTATTGAAGGTGTGTC+TGG + chr8_2:40978255-40978274 Msa1247750:intron 30.0%
TCGCAGTTTATTATTAGTGT+TGG + chr8_2:40978322-40978341 Msa1247750:intron 30.0%
GAAGGAAATCAGGTTATATT+CGG - chr8_2:40978386-40978405 None:intergenic 30.0%
TATAACCTGATTTCCTTCAT+AGG + chr8_2:40978388-40978407 Msa1247750:intron 30.0%
ACTGAATTTCAAATTGCATG+TGG + chr8_2:40978951-40978970 Msa1247750:three_prime_UTR 30.0%
CTGAATTTCAAATTGCATGT+GGG + chr8_2:40978952-40978971 Msa1247750:three_prime_UTR 30.0%
TGAATTTCAAATTGCATGTG+GGG + chr8_2:40978953-40978972 Msa1247750:three_prime_UTR 30.0%
TATGATATGTACTCAGAACT+TGG - chr8_2:40978986-40979005 None:intergenic 30.0%
TCTGAGTACATATCATATCA+TGG + chr8_2:40978989-40979008 Msa1247750:three_prime_UTR 30.0%
GTTATACATTAGCAAAATGG+GGG - chr8_2:40979163-40979182 None:intergenic 30.0%
! GTTATCATTTGTACGGATTT+TGG - chr8_2:40979252-40979271 None:intergenic 30.0%
! TTTTCTGTTAGAAATTGGAC+CGG - chr8_2:40979406-40979425 None:intergenic 30.0%
AAGAATATAAAGGAAGGGAA+TGG - chr8_2:40979547-40979566 None:intergenic 30.0%
!!! TAAATTTTTTCATGGCCGAT+GGG - chr8_2:40979636-40979655 None:intergenic 30.0%
!!! ATAAATTTTTTCATGGCCGA+TGG - chr8_2:40979637-40979656 None:intergenic 30.0%
GAAACTTAAAAGACCACTTA+GGG - chr8_2:40979791-40979810 None:intergenic 30.0%
TGAAACTTAAAAGACCACTT+AGG - chr8_2:40979792-40979811 None:intergenic 30.0%
!! ACTAATTTTAAGTGGGTGTT+AGG - chr8_2:40979926-40979945 None:intergenic 30.0%
!!! ATCTTTTTAGGTATGGCAAA+TGG + chr8_2:40979947-40979966 Msa1247750:intron 30.0%
!! TTTCAAACAGGTCATTTTAG+AGG - chr8_2:40980017-40980036 None:intergenic 30.0%
! GTTTTTGAATCGTTTCAAAC+AGG - chr8_2:40979835-40979854 None:intergenic 30.0%
GGGAAAAACGAAAATCTTAA+AGG + chr8_2:40980121-40980140 Msa1247750:intron 30.0%
ACAAACTGGAAAATTAGTTG+TGG + chr8_2:40980218-40980237 Msa1247750:intron 30.0%
! AATTAAGTACGATCCGTTTT+CGG + chr8_2:40980410-40980429 Msa1247750:intron 30.0%
!! GTTAAAAAGTGTTCCGAAAA+CGG - chr8_2:40980509-40980528 None:intergenic 30.0%
!! GAACACTTTTTAACGATCAT+TGG + chr8_2:40980515-40980534 Msa1247750:intron 30.0%
!!! TTCCCTTTTTTTAATTGGCA+CGG - chr8_2:40980567-40980586 None:intergenic 30.0%
!! GAGAATATTTCTACTTTTGG+TGG + chr8_2:40980706-40980725 Msa1247750:intron 30.0%
AATATTGTTTAATCTGCAGG+TGG + chr8_2:40981616-40981635 Msa1247750:intron 30.0%
ATATTGTTTAATCTGCAGGT+GGG + chr8_2:40981617-40981636 Msa1247750:intron 30.0%
!! AACTTGCTTTAACTTTTTGC+TGG - chr8_2:40981668-40981687 None:intergenic 30.0%
AAAAAGTTAAAGCAAGTTGC+AGG + chr8_2:40981670-40981689 Msa1247750:intron 30.0%
ATATCAAACTTTCCCATCAT+GGG + chr8_2:40981740-40981759 Msa1247750:intron 30.0%
! CATTATATGATATGATGGTG+AGG - chr8_2:40981792-40981811 None:intergenic 30.0%
! GAGAGTGTAAATGGAAAAAT+AGG + chr8_2:40981886-40981905 Msa1247750:three_prime_UTR 30.0%
GATAAGAAAATGAATGTCCG+TGG + chr8_2:40972373-40972392 Msa1247750:five_prime_UTR 35.0%
AGAAGAGAGAAGAGAGAAAA+GGG + chr8_2:40972588-40972607 Msa1247750:five_prime_UTR 35.0%
ATTGAAATTGGGGCTGAAAA+GGG - chr8_2:40972844-40972863 None:intergenic 35.0%
AATTGAAATTGGGGCTGAAA+AGG - chr8_2:40972845-40972864 None:intergenic 35.0%
! TTAATTGAAAGTATGGGGGT+TGG + chr8_2:40972922-40972941 Msa1247750:five_prime_UTR 35.0%
! TAATTGAAAGTATGGGGGTT+GGG + chr8_2:40972923-40972942 Msa1247750:five_prime_UTR 35.0%
GAGGAAGGAACAAGAAAAAT+TGG + chr8_2:40972956-40972975 Msa1247750:five_prime_UTR 35.0%
GAAGGAACAAGAAAAATTGG+AGG + chr8_2:40972959-40972978 Msa1247750:five_prime_UTR 35.0%
TAAGAAGATACATAGGGACA+TGG + chr8_2:40973055-40973074 Msa1247750:intron 35.0%
AATTAAGTTCAGAGGAGTAG+AGG + chr8_2:40973628-40973647 Msa1247750:CDS 35.0%
! TTATGAAGAGGATTTGAAGC+TGG + chr8_2:40973676-40973695 Msa1247750:CDS 35.0%
! ATTTGAAGCTGGTGAGTTAT+GGG + chr8_2:40973687-40973706 Msa1247750:intron 35.0%
CGTCTATGTTTCTTAATCTC+AGG + chr8_2:40973839-40973858 Msa1247750:CDS 35.0%
AAAAAACCTTACCATCGCTA+AGG - chr8_2:40973963-40973982 None:intergenic 35.0%
!!! TAGCGATGGTAAGGTTTTTT+TGG + chr8_2:40973963-40973982 Msa1247750:intron 35.0%
CGCATGGAGTATAAGAAAAT+TGG + chr8_2:40974257-40974276 Msa1247750:intron 35.0%
TTACACTTTAGTAGGAGATG+AGG - chr8_2:40974444-40974463 None:intergenic 35.0%
AGCTAGATAAGTCTTTGATG+TGG + chr8_2:40974685-40974704 Msa1247750:intron 35.0%
TGCCTTTCTTATGTGTATGA+TGG + chr8_2:40974866-40974885 Msa1247750:intron 35.0%
TGTTGTTGAAAGCTTTGCTT+TGG + chr8_2:40974903-40974922 Msa1247750:intron 35.0%
!!! TGTGTGTAGAAGTACTTTTC+TGG + chr8_2:40975250-40975269 Msa1247750:intron 35.0%
GAGCATATTGTTGATCTGAA+AGG + chr8_2:40975332-40975351 Msa1247750:intron 35.0%
!!! TAATTTTTGGTTTGTGGTGG+AGG + chr8_2:40975422-40975441 Msa1247750:intron 35.0%
ATTTAACACGAAATAGGCTC+TGG + chr8_2:40975706-40975725 Msa1247750:intron 35.0%
! AGAGTGTTCAGAATAAGTCA+TGG + chr8_2:40976138-40976157 Msa1247750:intron 35.0%
! AACACATTTTACCCAAGGTA+AGG - chr8_2:40976186-40976205 None:intergenic 35.0%
CATGAGTGATGAAGCAATAT+GGG + chr8_2:40976335-40976354 Msa1247750:CDS 35.0%
!!! TCTGTTTGTTGTAGCACTTT+TGG + chr8_2:40976595-40976614 Msa1247750:intron 35.0%
!!! CTGTTTGTTGTAGCACTTTT+GGG + chr8_2:40976596-40976615 Msa1247750:intron 35.0%
AACGAAGAACAACATAGAGA+TGG - chr8_2:40976625-40976644 None:intergenic 35.0%
ATGCTAGAACTGATGATTCA+TGG - chr8_2:40976655-40976674 None:intergenic 35.0%
! ATGAATCATCAGTTCTAGCA+TGG + chr8_2:40976654-40976673 Msa1247750:intron 35.0%
!! AAGAACAAAAAGTGTTGGTC+AGG + chr8_2:40976849-40976868 Msa1247750:intron 35.0%
CTCACATGAAAGCTAACAAT+TGG + chr8_2:40977060-40977079 Msa1247750:intron 35.0%
TATCGCAGTTGAGTCTAAAT+TGG - chr8_2:40977409-40977428 None:intergenic 35.0%
! TATCACTGATAGTGTTATCG+GGG + chr8_2:40977459-40977478 Msa1247750:CDS 35.0%
! ATGGAAGATTTTGCAGTTCT+AGG - chr8_2:40977615-40977634 None:intergenic 35.0%
AAAATCTTCCATTCAGTGGT+TGG + chr8_2:40977623-40977642 Msa1247750:CDS 35.0%
AAATCTTCCATTCAGTGGTT+GGG + chr8_2:40977624-40977643 Msa1247750:CDS 35.0%
ATGCAGCTCAATTCATTCAT+TGG + chr8_2:40977809-40977828 Msa1247750:intron 35.0%
!! ATTGGCTTGTGTAAGTTACA+AGG + chr8_2:40977827-40977846 Msa1247750:intron 35.0%
GTTGACAAGAATGCTAGAAT+TGG + chr8_2:40977973-40977992 Msa1247750:CDS 35.0%
AAACATAGATTGCCTTCTTG+CGG + chr8_2:40978178-40978197 Msa1247750:intron 35.0%
!!! GCACCGACATTTTTTATTGA+AGG + chr8_2:40978246-40978265 Msa1247750:intron 35.0%
TTTCCTTCATAGGAAAGCTT+TGG + chr8_2:40978398-40978417 Msa1247750:intron 35.0%
! TGACAACAAGCAGATTTTGA+TGG + chr8_2:40978554-40978573 Msa1247750:intron 35.0%
GAATTTCAAATTGCATGTGG+GGG + chr8_2:40978954-40978973 Msa1247750:three_prime_UTR 35.0%
GAGTACATATCATATCATGG+TGG + chr8_2:40978992-40979011 Msa1247750:intron 35.0%
! CTCTGTCGATAATTTTGTTC+TGG + chr8_2:40979327-40979346 Msa1247750:intron 35.0%
! TTCTCCCTCTACAATTTTCT+TGG + chr8_2:40979358-40979377 Msa1247750:intron 35.0%
TCAGCCAAGAAAATTGTAGA+GGG - chr8_2:40979365-40979384 None:intergenic 35.0%
TTCAGCCAAGAAAATTGTAG+AGG - chr8_2:40979366-40979385 None:intergenic 35.0%
AATTTCGACTTCTCCGAAAA+TGG + chr8_2:40979434-40979453 Msa1247750:intron 35.0%
CAAAATGACATCAACAGAAC+AGG - chr8_2:40979610-40979629 None:intergenic 35.0%
!!! GATGTCATTTTGAATCCCAT+CGG + chr8_2:40979618-40979637 Msa1247750:intron 35.0%
! AAACTCTATGAAGCTTGCTT+TGG + chr8_2:40979689-40979708 Msa1247750:intron 35.0%
!! GTTTTTCGTTTTTCCCTAAG+TGG + chr8_2:40979775-40979794 Msa1247750:intron 35.0%
TGCTTCTTTGAACTCATCTT+TGG + chr8_2:40979886-40979905 Msa1247750:intron 35.0%
! AGTTTGTGTGTTTGAGACAT+AGG - chr8_2:40980205-40980224 None:intergenic 35.0%
TATGTCTCAAACACACAAAC+TGG + chr8_2:40980204-40980223 Msa1247750:intron 35.0%
! ATTAAGTACGATCCGTTTTC+GGG + chr8_2:40980411-40980430 Msa1247750:intron 35.0%
! AATTAGGTACGATCCGTTTT+CGG + chr8_2:40980493-40980512 Msa1247750:intron 35.0%
!!! TCCCTTTTTTTAATTGGCAC+GGG - chr8_2:40980566-40980585 None:intergenic 35.0%
!! GGTGTTAACTTGTGCTATAA+GGG - chr8_2:40980743-40980762 None:intergenic 35.0%
!! TGGTGTTAACTTGTGCTATA+AGG - chr8_2:40980744-40980763 None:intergenic 35.0%
TATTGTTTAATCTGCAGGTG+GGG + chr8_2:40981618-40981637 Msa1247750:intron 35.0%
!! TTTAACTTTTTGCTGGCACA+TGG - chr8_2:40981661-40981680 None:intergenic 35.0%
! CATGATGGGAAAGTTTGATA+TGG - chr8_2:40981741-40981760 None:intergenic 35.0%
CATATCAAACTTTCCCATCA+TGG + chr8_2:40981739-40981758 Msa1247750:intron 35.0%
! ATGATGGTGAGGTTTAGTAT+GGG - chr8_2:40981781-40981800 None:intergenic 35.0%
! TATGATGGTGAGGTTTAGTA+TGG - chr8_2:40981782-40981801 None:intergenic 35.0%
! GTACAGTTTGAGAGTGTAAA+TGG + chr8_2:40981877-40981896 Msa1247750:three_prime_UTR 35.0%
TTGGGAATCGTACCTGAAAA+TGG - chr8_2:40972307-40972326 None:intergenic 40.0%
!!! ATTTTCAGGTACGATTCCCA+AGG + chr8_2:40972306-40972325 Msa1247750:five_prime_UTR 40.0%
TCAAGATAGCCAATCTCCTT+GGG - chr8_2:40972325-40972344 None:intergenic 40.0%
ATCAAGATAGCCAATCTCCT+TGG - chr8_2:40972326-40972345 None:intergenic 40.0%
GGGCAAAAAGGTAATTTCCA+CGG - chr8_2:40972393-40972412 None:intergenic 40.0%
! ATTACCTTTTTGCCCTTCTG+AGG + chr8_2:40972398-40972417 Msa1247750:five_prime_UTR 40.0%
! TTACCTTTTTGCCCTTCTGA+GGG + chr8_2:40972399-40972418 Msa1247750:five_prime_UTR 40.0%
!!! TGAGGGGCATTTTGGTAAAT+TGG + chr8_2:40972416-40972435 Msa1247750:five_prime_UTR 40.0%
GAGAAGAGAGAAGAGAGAAA+AGG + chr8_2:40972587-40972606 Msa1247750:five_prime_UTR 40.0%
!!! TGCACCGATTTTAGAAGCAA+AGG + chr8_2:40972751-40972770 Msa1247750:five_prime_UTR 40.0%
GAATTTGATCTGAATGGTGC+TGG + chr8_2:40973080-40973099 Msa1247750:intron 40.0%
! TCAGTACTCTTTGGTTCATG+CGG + chr8_2:40973471-40973490 Msa1247750:intron 40.0%
AGAGCTGCAATTAAGTTCAG+AGG + chr8_2:40973620-40973639 Msa1247750:CDS 40.0%
! GATTTGAAGCTGGTGAGTTA+TGG + chr8_2:40973686-40973705 Msa1247750:intron 40.0%
! TTTGAAGCTGGTGAGTTATG+GGG + chr8_2:40973688-40973707 Msa1247750:intron 40.0%
! TTTAAGAAGCGCAAGTCTCT+TGG + chr8_2:40973935-40973954 Msa1247750:CDS 40.0%
TGATGTTGGCAACTTTGTGA+TGG + chr8_2:40974323-40974342 Msa1247750:intron 40.0%
GATGTTGGCAACTTTGTGAT+GGG + chr8_2:40974324-40974343 Msa1247750:intron 40.0%
ATGTTGGCAACTTTGTGATG+GGG + chr8_2:40974325-40974344 Msa1247750:intron 40.0%
ATTCAGGTGTCTTTCTTGCT+GGG + chr8_2:40974363-40974382 Msa1247750:intron 40.0%
!! TGGCTGTTTCTTCTTGTGAT+TGG + chr8_2:40974570-40974589 Msa1247750:intron 40.0%
ACCATCATAGACCAGTCATT+GGG - chr8_2:40974768-40974787 None:intergenic 40.0%
AACCATCATAGACCAGTCAT+TGG - chr8_2:40974769-40974788 None:intergenic 40.0%
! AATGTGACTTGCCAAACTCA+GGG + chr8_2:40974957-40974976 Msa1247750:intron 40.0%
TAAGAGCAAGAGAAGAGAAG+AGG + chr8_2:40976065-40976084 Msa1247750:intron 40.0%
AAGAGCAAGAGAAGAGAAGA+GGG + chr8_2:40976066-40976085 Msa1247750:intron 40.0%
!! CAATGGCAAGAGCTTTGAAT+TGG + chr8_2:40976101-40976120 Msa1247750:intron 40.0%
!! GGTAAGGCTCTAAGCTAAAA+AGG - chr8_2:40976170-40976189 None:intergenic 40.0%
! TTTAGCTTAGAGCCTTACCT+TGG + chr8_2:40976171-40976190 Msa1247750:intron 40.0%
TTAGCTTAGAGCCTTACCTT+GGG + chr8_2:40976172-40976191 Msa1247750:intron 40.0%
! ATGTGTAAAGCTCTAATGCC+AGG + chr8_2:40976300-40976319 Msa1247750:CDS 40.0%
! TGTGTAAAGCTCTAATGCCA+GGG + chr8_2:40976301-40976320 Msa1247750:CDS 40.0%
GCATGAGTGATGAAGCAATA+TGG + chr8_2:40976334-40976353 Msa1247750:CDS 40.0%
TATGGGAAACTCTTCGTGTA+AGG + chr8_2:40976352-40976371 Msa1247750:intron 40.0%
ACATGGTTGCAAAACTCCAA+GGG - chr8_2:40976730-40976749 None:intergenic 40.0%
AACATGGTTGCAAAACTCCA+AGG - chr8_2:40976731-40976750 None:intergenic 40.0%
CTTCAATTGAGAGGGAGTTA+TGG - chr8_2:40976983-40977002 None:intergenic 40.0%
! TTAGCTTTCATGTGAGCAGT+TGG - chr8_2:40977056-40977075 None:intergenic 40.0%
TCCACTTCACAACTTATCTG+CGG - chr8_2:40977121-40977140 None:intergenic 40.0%
CTGCAAAATCTTCCATTCAG+TGG + chr8_2:40977619-40977638 Msa1247750:CDS 40.0%
GAGTTTCTGCCAATACCAAT+TGG - chr8_2:40977934-40977953 None:intergenic 40.0%
GACCAAAGATTAGGAACAGA+GGG - chr8_2:40978118-40978137 None:intergenic 40.0%
AGACCAAAGATTAGGAACAG+AGG - chr8_2:40978119-40978138 None:intergenic 40.0%
GCTTTCCTATGAAGGAAATC+AGG - chr8_2:40978396-40978415 None:intergenic 40.0%
GACGAACTCTTCACATTTGA+AGG - chr8_2:40978588-40978607 None:intergenic 40.0%
CAATGAGTGTTCACATGAGA+AGG + chr8_2:40978609-40978628 Msa1247750:intron 40.0%
TTATCCAAGTCGACATCGTT+GGG - chr8_2:40978667-40978686 None:intergenic 40.0%
AAGGCAATGATGAAGACAAG+AGG + chr8_2:40978819-40978838 Msa1247750:CDS 40.0%
TGATGAAGACAAGAGGAGAT+TGG + chr8_2:40978826-40978845 Msa1247750:CDS 40.0%
GACAAGAGGAGATTGGAAAA+TGG + chr8_2:40978833-40978852 Msa1247750:CDS 40.0%
!!! GATTTTGGCTGTTGGAATGA+AGG - chr8_2:40979237-40979256 None:intergenic 40.0%
!!! TTTGTACGGATTTTGGCTGT+TGG - chr8_2:40979245-40979264 None:intergenic 40.0%
TGACATCAACAGAACAGGAT+TGG - chr8_2:40979605-40979624 None:intergenic 40.0%
!! CAGGTCATTTTAGAGGATGA+TGG - chr8_2:40980010-40980029 None:intergenic 40.0%
ACCCCGTGCCAATTAAAAAA+AGG + chr8_2:40980561-40980580 Msa1247750:intron 40.0%
!!! CCCTTTTTTTAATTGGCACG+GGG - chr8_2:40980565-40980584 None:intergenic 40.0%
CCCCGTGCCAATTAAAAAAA+GGG + chr8_2:40980562-40980581 Msa1247750:intron 40.0%
ATTTATTTACGTACGCCCTC+CGG + chr8_2:40981309-40981328 Msa1247750:intron 40.0%
TGCTAATAATAGTGACCGGA+GGG - chr8_2:40981327-40981346 None:intergenic 40.0%
TTGCTAATAATAGTGACCGG+AGG - chr8_2:40981328-40981347 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr8_2:40981444-40981463 Msa1247750:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr8_2:40981445-40981464 Msa1247750:intron 40.0%
TGAGGTTTAGTATGGGAATG+GGG - chr8_2:40981774-40981793 None:intergenic 40.0%
GTGAGGTTTAGTATGGGAAT+GGG - chr8_2:40981775-40981794 None:intergenic 40.0%
GCATGCTGCTGAATAATTAG+TGG - chr8_2:40981827-40981846 None:intergenic 40.0%
! TACCTTTTTGCCCTTCTGAG+GGG + chr8_2:40972400-40972419 Msa1247750:five_prime_UTR 45.0%
TACCAAAATGCCCCTCAGAA+GGG - chr8_2:40972413-40972432 None:intergenic 45.0%
TTACCAAAATGCCCCTCAGA+AGG - chr8_2:40972414-40972433 None:intergenic 45.0%
AAGGGAACGAGAGAAAGAAG+AGG + chr8_2:40972606-40972625 Msa1247750:five_prime_UTR 45.0%
AGGGAACGAGAGAAAGAAGA+GGG + chr8_2:40972607-40972626 Msa1247750:five_prime_UTR 45.0%
AGAGAAAGAAGAGGGAACGA+AGG + chr8_2:40972615-40972634 Msa1247750:five_prime_UTR 45.0%
GAGAAAGAAGAGGGAACGAA+GGG + chr8_2:40972616-40972635 Msa1247750:five_prime_UTR 45.0%
ATTGGGGCTGAAAAGGGTTA+GGG - chr8_2:40972838-40972857 None:intergenic 45.0%
AATTGGGGCTGAAAAGGGTT+AGG - chr8_2:40972839-40972858 None:intergenic 45.0%
TTGGGTTTGCAATTGGAGGA+AGG + chr8_2:40972941-40972960 Msa1247750:five_prime_UTR 45.0%
! TTGATCTGAATGGTGCTGGA+TGG + chr8_2:40973084-40973103 Msa1247750:intron 45.0%
CATTCAGGTGTCTTTCTTGC+TGG + chr8_2:40974362-40974381 Msa1247750:intron 45.0%
AAGCATACACTCCCAATGAC+TGG + chr8_2:40974754-40974773 Msa1247750:intron 45.0%
!! TCCCAATGACTGGTCTATGA+TGG + chr8_2:40974764-40974783 Msa1247750:intron 45.0%
! GAATGTGACTTGCCAAACTC+AGG + chr8_2:40974956-40974975 Msa1247750:intron 45.0%
! ATGTGACTTGCCAAACTCAG+GGG + chr8_2:40974958-40974977 Msa1247750:intron 45.0%
! GAAATATTTGGTTCACCGCC+CGG + chr8_2:40975998-40976017 Msa1247750:intron 45.0%
CCTTATCATTTCAATCCGGG+CGG - chr8_2:40976016-40976035 None:intergenic 45.0%
TGAGTGAGAAATGGAAGGGA+GGG - chr8_2:40976250-40976269 None:intergenic 45.0%
TCCCTTCCATTTCTCACTCA+CGG + chr8_2:40976250-40976269 Msa1247750:intron 45.0%
! GTGTAAAGCTCTAATGCCAG+GGG + chr8_2:40976302-40976321 Msa1247750:CDS 45.0%
! TTGGTGTGTTACTGTCGTCA+AGG + chr8_2:40976492-40976511 Msa1247750:intron 45.0%
TGTTACTGTCGTCAAGGTCT+TGG + chr8_2:40976498-40976517 Msa1247750:intron 45.0%
ATCATGTGTATGCAACCCCT+TGG + chr8_2:40976711-40976730 Msa1247750:intron 45.0%
CATGGTTGCAAAACTCCAAG+GGG - chr8_2:40976729-40976748 None:intergenic 45.0%
CCACTTCACAACTTATCTGC+GGG - chr8_2:40977120-40977139 None:intergenic 45.0%
! ACTGATAGTGTTATCGGGGA+AGG + chr8_2:40977463-40977482 Msa1247750:CDS 45.0%
CTGCATTCTTGCATATCAGG+AGG + chr8_2:40977647-40977666 Msa1247750:CDS 45.0%
GCTAAAGGCAGTGTTCCAAT+TGG + chr8_2:40977916-40977935 Msa1247750:CDS 45.0%
GGCAGTGTTCCAATTGGTAT+TGG + chr8_2:40977922-40977941 Msa1247750:CDS 45.0%
GAACAGAGGGAGTAGATGAT+GGG - chr8_2:40978105-40978124 None:intergenic 45.0%
CTCCCTCTGTTCCTAATCTT+TGG + chr8_2:40978113-40978132 Msa1247750:intron 45.0%
CACACATGTTGCTGTCATGT+CGG - chr8_2:40978284-40978303 None:intergenic 45.0%
CAGCCAAAGCTTTCCTATGA+AGG - chr8_2:40978404-40978423 None:intergenic 45.0%
AGTGTTCACATGAGAAGGCT+TGG + chr8_2:40978614-40978633 Msa1247750:intron 45.0%
CTTATCCAAGTCGACATCGT+TGG - chr8_2:40978668-40978687 None:intergenic 45.0%
!! CAACGATGTCGACTTGGATA+AGG + chr8_2:40978666-40978685 Msa1247750:intron 45.0%
! GGATGGTCGAGTAAGTTTTG+AGG + chr8_2:40978791-40978810 Msa1247750:intron 45.0%
TATCATGGTGGCATTTAGCC+TGG + chr8_2:40979004-40979023 Msa1247750:intron 45.0%
ATCATGGTGGCATTTAGCCT+GGG + chr8_2:40979005-40979024 Msa1247750:intron 45.0%
GGAAAAAACTTCCCATTCCC+AGG - chr8_2:40979025-40979044 None:intergenic 45.0%
!!! TGGGAAGTTTTTTCCCACCA+TGG + chr8_2:40979030-40979049 Msa1247750:intron 45.0%
!!! GGGAAGTTTTTTCCCACCAT+GGG + chr8_2:40979031-40979050 Msa1247750:intron 45.0%
AAACCCATCAGATCTGTCAC+CGG + chr8_2:40979384-40979403 Msa1247750:intron 45.0%
!! GAAGGGAATGGACTGACAAT+GGG - chr8_2:40979535-40979554 None:intergenic 45.0%
TGGGTGTTAGGAGCTAGATT+TGG - chr8_2:40979914-40979933 None:intergenic 45.0%
!! GGTAAAGAGTGTCCCGAAAA+CGG - chr8_2:40980426-40980445 None:intergenic 45.0%
ACATGGTACACCAAAAGCAG+CGG - chr8_2:40981644-40981663 None:intergenic 45.0%
GGTGAGGTTTAGTATGGGAA+TGG - chr8_2:40981776-40981795 None:intergenic 45.0%
CCTCACACTTTCTTCAGATG+AGG - chr8_2:40981912-40981931 None:intergenic 45.0%
! CCTCATCTGAAGAAAGTGTG+AGG + chr8_2:40981909-40981928 Msa1247750:three_prime_UTR 45.0%
!! ACTATTAAAATATAAAATAT+AGG + chr8_2:40979728-40979747 Msa1247750:intron 5.0%
!!! TTTTAACATTATTAATTTTT+TGG + chr8_2:40980963-40980982 Msa1247750:intron 5.0%
!! TATAGTTTAAAAAATAATAA+AGG - chr8_2:40981125-40981144 None:intergenic 5.0%
GGTACGATTCCCAAGGAGAT+TGG + chr8_2:40972313-40972332 Msa1247750:five_prime_UTR 50.0%
AAGAAGGGGGACGAGAGAAA+CGG + chr8_2:40972497-40972516 Msa1247750:five_prime_UTR 50.0%
AGAGAAACGGGAGAGGAAGA+AGG + chr8_2:40972510-40972529 Msa1247750:five_prime_UTR 50.0%
GAGAAACGGGAGAGGAAGAA+GGG + chr8_2:40972511-40972530 Msa1247750:five_prime_UTR 50.0%
AACGAAGGGACCGAGAGAAA+CGG + chr8_2:40972630-40972649 Msa1247750:five_prime_UTR 50.0%
AGAGAGAACGGAAGAGGAGA+GGG + chr8_2:40972678-40972697 Msa1247750:five_prime_UTR 50.0%
!! GTGCAGATCAGAGTGTTGGA+CGG - chr8_2:40972736-40972755 None:intergenic 50.0%
ATCGGTGCAGATCAGAGTGT+TGG - chr8_2:40972740-40972759 None:intergenic 50.0%
GGCTGAAAAGGGTTAGGGTT+TGG - chr8_2:40972833-40972852 None:intergenic 50.0%
ATGGGGGTTGGGTTTGCAAT+TGG + chr8_2:40972934-40972953 Msa1247750:five_prime_UTR 50.0%
CGGGGGTTATCAGTACTCTT+TGG + chr8_2:40973462-40973481 Msa1247750:intron 50.0%
! TTGGTGCCTTAGCGATGGTA+AGG + chr8_2:40973954-40973973 Msa1247750:CDS 50.0%
TGCTAGTAGTCCCCTGAGTT+TGG - chr8_2:40974971-40974990 None:intergenic 50.0%
! GTTTGTGGTGGAGGAGTTTC+TGG + chr8_2:40975431-40975450 Msa1247750:intron 50.0%
CCGCCCGGATTGAAATGATA+AGG + chr8_2:40976013-40976032 Msa1247750:intron 50.0%
AGAGAAGAGAAGAGGGCTGA+AGG + chr8_2:40976073-40976092 Msa1247750:intron 50.0%
GAGAAGAGAAGAGGGCTGAA+GGG + chr8_2:40976074-40976093 Msa1247750:intron 50.0%
GAGGGCTGAAGGGATAACAA+TGG + chr8_2:40976084-40976103 Msa1247750:intron 50.0%
TGAGAAATGGAAGGGAGGGA+GGG - chr8_2:40976246-40976265 None:intergenic 50.0%
GTGAGTGAGAAATGGAAGGG+AGG - chr8_2:40976251-40976270 None:intergenic 50.0%
CCCGTGAGTGAGAAATGGAA+GGG - chr8_2:40976254-40976273 None:intergenic 50.0%
CCCTTCCATTTCTCACTCAC+GGG + chr8_2:40976251-40976270 Msa1247750:intron 50.0%
ACCCGTGAGTGAGAAATGGA+AGG - chr8_2:40976255-40976274 None:intergenic 50.0%
AACGACCCGTGAGTGAGAAA+TGG - chr8_2:40976259-40976278 None:intergenic 50.0%
CTCATGCTTTCTTCATCCCC+TGG - chr8_2:40976321-40976340 None:intergenic 50.0%
AGGCACAGAGAAGGATAGAC+TGG + chr8_2:40976869-40976888 Msa1247750:intron 50.0%
CCCGCAGATAAGTTGTGAAG+TGG + chr8_2:40977117-40977136 Msa1247750:intron 50.0%
GCATCAAGCATCTTCGACAG+AGG - chr8_2:40977436-40977455 None:intergenic 50.0%
CGGGGAAGGATGTGTGATTA+AGG + chr8_2:40977477-40977496 Msa1247750:CDS 50.0%
AATGCAGCCCAACCACTGAA+TGG - chr8_2:40977634-40977653 None:intergenic 50.0%
GGGCTGCATTCTTGCATATC+AGG + chr8_2:40977644-40977663 Msa1247750:CDS 50.0%
GATGGGCGCAGATTATTACG+AGG + chr8_2:40977694-40977713 Msa1247750:CDS 50.0%
GGAACAGAGGGAGTAGATGA+TGG - chr8_2:40978106-40978125 None:intergenic 50.0%
TACACTACGATGCCGCAAGA+AGG - chr8_2:40978193-40978212 None:intergenic 50.0%
! CATTCCCAACGATGTCGACT+TGG + chr8_2:40978660-40978679 Msa1247750:intron 50.0%
! CAAATTGCATGTGGGGGTGT+AGG + chr8_2:40978960-40978979 Msa1247750:three_prime_UTR 50.0%
GTGGCATTTAGCCTGGGAAT+GGG + chr8_2:40979011-40979030 Msa1247750:intron 50.0%
AATGGGAGCTTTCCCATGGT+GGG - chr8_2:40979046-40979065 None:intergenic 50.0%
GCAAAATGGGGGATGTGTAC+TGG - chr8_2:40979152-40979171 None:intergenic 50.0%
TCGACAGAGACGATGATGTG+CGG - chr8_2:40979316-40979335 None:intergenic 50.0%
!! GGAAGGGAATGGACTGACAA+TGG - chr8_2:40979536-40979555 None:intergenic 50.0%
ATGTTGCCAGCTGATGAACG+CGG + chr8_2:40979655-40979674 Msa1247750:intron 50.0%
GGGGAGTTCTTTCCCATGAT+GGG - chr8_2:40981755-40981774 None:intergenic 50.0%
TGGGGAGTTCTTTCCCATGA+TGG - chr8_2:40981756-40981775 None:intergenic 50.0%
TGCCCCTCAGAAGGGCAAAA+AGG - chr8_2:40972405-40972424 None:intergenic 55.0%
!!! TGCCCTTCTGAGGGGCATTT+TGG + chr8_2:40972408-40972427 Msa1247750:five_prime_UTR 55.0%
AGAAGGGGGACGAGAGAAAC+GGG + chr8_2:40972498-40972517 Msa1247750:five_prime_UTR 55.0%
AAACGGGAGAGGAAGAAGGG+TGG + chr8_2:40972514-40972533 Msa1247750:five_prime_UTR 55.0%
ACGAAGGGACCGAGAGAAAC+GGG + chr8_2:40972631-40972650 Msa1247750:five_prime_UTR 55.0%
TCTCCCGTTCCCGTTTCTCT+CGG - chr8_2:40972643-40972662 None:intergenic 55.0%
AGAAGGGCGACGAGAGAGAA+CGG + chr8_2:40972666-40972685 Msa1247750:five_prime_UTR 55.0%
GAGAGAGAACGGAAGAGGAG+AGG + chr8_2:40972677-40972696 Msa1247750:five_prime_UTR 55.0%
GGGGTTGGGTTTGCAATTGG+AGG + chr8_2:40972937-40972956 Msa1247750:five_prime_UTR 55.0%
! CTTTGGTTCATGCGGCTGCT+TGG + chr8_2:40973479-40973498 Msa1247750:CDS 55.0%
!! GTCTCTTGGTGCCTTAGCGA+TGG + chr8_2:40973949-40973968 Msa1247750:CDS 55.0%
AAATGGAAGGGAGGGAGGGA+GGG - chr8_2:40976242-40976261 None:intergenic 55.0%
GTGAGAAATGGAAGGGAGGG+AGG - chr8_2:40976247-40976266 None:intergenic 55.0%
! GTGTTGGTCAGGCACAGAGA+AGG + chr8_2:40976860-40976879 Msa1247750:intron 55.0%
GGTGGCATTTAGCCTGGGAA+TGG + chr8_2:40979010-40979029 Msa1247750:intron 55.0%
GAATGGGAGCTTTCCCATGG+TGG - chr8_2:40979047-40979066 None:intergenic 55.0%
TGGGAATGGGAGCTTTCCCA+TGG - chr8_2:40979050-40979069 None:intergenic 55.0%
ATGGGAAAGCTCCCATTCCC+AGG + chr8_2:40979049-40979068 Msa1247750:intron 55.0%
AAAGCTCCCATTCCCAGGAC+AGG + chr8_2:40979054-40979073 Msa1247750:intron 55.0%
GGACCGGTGACAGATCTGAT+GGG - chr8_2:40979390-40979409 None:intergenic 55.0%
TGGACCGGTGACAGATCTGA+TGG - chr8_2:40979391-40979410 None:intergenic 55.0%
GGGACCGAGAGAAACGGGAA+CGG + chr8_2:40972636-40972655 Msa1247750:five_prime_UTR 60.0%
GGACCGAGAGAAACGGGAAC+GGG + chr8_2:40972637-40972656 Msa1247750:five_prime_UTR 60.0%
GAGAGAAACGGGAACGGGAG+AGG + chr8_2:40972642-40972661 Msa1247750:five_prime_UTR 60.0%
ACGGGAACGGGAGAGGAAGA+AGG + chr8_2:40972649-40972668 Msa1247750:five_prime_UTR 60.0%
CGGGAACGGGAGAGGAAGAA+GGG + chr8_2:40972650-40972669 Msa1247750:five_prime_UTR 60.0%
GCGACGAGAGAGAACGGAAG+AGG + chr8_2:40972672-40972691 Msa1247750:five_prime_UTR 60.0%
!! GATCAGAGTGTTGGACGGCG+AGG - chr8_2:40972731-40972750 None:intergenic 60.0%
AATGGAAGGGAGGGAGGGAG+GGG - chr8_2:40976241-40976260 None:intergenic 60.0%
GAAATGGAAGGGAGGGAGGG+AGG - chr8_2:40976243-40976262 None:intergenic 60.0%
ATCTCACCGCCACCTGTCCT+GGG - chr8_2:40979069-40979088 None:intergenic 60.0%
TATCTCACCGCCACCTGTCC+TGG - chr8_2:40979070-40979089 None:intergenic 60.0%
CCTTCTCCGCGTTCATCAGC+TGG - chr8_2:40979664-40979683 None:intergenic 60.0%
CCAGCTGATGAACGCGGAGA+AGG + chr8_2:40979661-40979680 Msa1247750:intron 60.0%
GGGGACGAGAGAAACGGGAG+AGG + chr8_2:40972503-40972522 Msa1247750:five_prime_UTR 65.0%
GTGTTGGACGGCGAGGTCGA+CGG - chr8_2:40972724-40972743 None:intergenic 65.0%
GCTCCCATTCCCAGGACAGG+TGG + chr8_2:40979057-40979076 Msa1247750:intron 65.0%
CCGCCACCTGTCCTGGGAAT+GGG - chr8_2:40979063-40979082 None:intergenic 65.0%
CCCATTCCCAGGACAGGTGG+CGG + chr8_2:40979060-40979079 Msa1247750:intron 65.0%
ACCGCCACCTGTCCTGGGAA+TGG - chr8_2:40979064-40979083 None:intergenic 65.0%
TTGGACGGCGAGGTCGACGG+CGG - chr8_2:40972721-40972740 None:intergenic 70.0%
!! GCAGGTGGGGCCGCTGCTTT+TGG + chr8_2:40981631-40981650 Msa1247750:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 40972113 40982090 40972113 ID=Msa1247750;Name=Msa1247750
chr8_2 mRNA 40972113 40982090 40972113 ID=Msa1247750-mRNA-1;Parent=Msa1247750;Name=Msa1247750-mRNA-1;_AED=0.30;_eAED=0.30;_QI=794|0.72|0.83|1|0.72|0.58|12|353|266
chr8_2 exon 40972113 40972781 40972113 ID=Msa1247750-mRNA-1:exon:12506;Parent=Msa1247750-mRNA-1
chr8_2 exon 40972876 40972980 40972876 ID=Msa1247750-mRNA-1:exon:12507;Parent=Msa1247750-mRNA-1
chr8_2 exon 40973282 40973322 40973282 ID=Msa1247750-mRNA-1:exon:12508;Parent=Msa1247750-mRNA-1
chr8_2 exon 40973475 40973500 40973475 ID=Msa1247750-mRNA-1:exon:12509;Parent=Msa1247750-mRNA-1
chr8_2 exon 40973610 40973697 40973610 ID=Msa1247750-mRNA-1:exon:12510;Parent=Msa1247750-mRNA-1
chr8_2 exon 40973833 40973975 40973833 ID=Msa1247750-mRNA-1:exon:12511;Parent=Msa1247750-mRNA-1
chr8_2 exon 40976299 40976368 40976299 ID=Msa1247750-mRNA-1:exon:12512;Parent=Msa1247750-mRNA-1
chr8_2 exon 40977415 40977498 40977415 ID=Msa1247750-mRNA-1:exon:12513;Parent=Msa1247750-mRNA-1
chr8_2 exon 40977617 40977715 40977617 ID=Msa1247750-mRNA-1:exon:12514;Parent=Msa1247750-mRNA-1
chr8_2 exon 40977889 40978008 40977889 ID=Msa1247750-mRNA-1:exon:12515;Parent=Msa1247750-mRNA-1
chr8_2 exon 40978792 40979009 40978792 ID=Msa1247750-mRNA-1:exon:12516;Parent=Msa1247750-mRNA-1
chr8_2 exon 40981806 40982090 40981806 ID=Msa1247750-mRNA-1:exon:12517;Parent=Msa1247750-mRNA-1
chr8_2 five_prime_UTR 40972113 40972781 40972113 ID=Msa1247750-mRNA-1:five_prime_utr;Parent=Msa1247750-mRNA-1
chr8_2 five_prime_UTR 40972876 40972980 40972876 ID=Msa1247750-mRNA-1:five_prime_utr;Parent=Msa1247750-mRNA-1
chr8_2 five_prime_UTR 40973282 40973301 40973282 ID=Msa1247750-mRNA-1:five_prime_utr;Parent=Msa1247750-mRNA-1
chr8_2 CDS 40973302 40973322 40973302 ID=Msa1247750-mRNA-1:cds;Parent=Msa1247750-mRNA-1
chr8_2 CDS 40973475 40973500 40973475 ID=Msa1247750-mRNA-1:cds;Parent=Msa1247750-mRNA-1
chr8_2 CDS 40973610 40973697 40973610 ID=Msa1247750-mRNA-1:cds;Parent=Msa1247750-mRNA-1
chr8_2 CDS 40973833 40973975 40973833 ID=Msa1247750-mRNA-1:cds;Parent=Msa1247750-mRNA-1
chr8_2 CDS 40976299 40976368 40976299 ID=Msa1247750-mRNA-1:cds;Parent=Msa1247750-mRNA-1
chr8_2 CDS 40977415 40977498 40977415 ID=Msa1247750-mRNA-1:cds;Parent=Msa1247750-mRNA-1
chr8_2 CDS 40977617 40977715 40977617 ID=Msa1247750-mRNA-1:cds;Parent=Msa1247750-mRNA-1
chr8_2 CDS 40977889 40978008 40977889 ID=Msa1247750-mRNA-1:cds;Parent=Msa1247750-mRNA-1
chr8_2 CDS 40978792 40978941 40978792 ID=Msa1247750-mRNA-1:cds;Parent=Msa1247750-mRNA-1
chr8_2 three_prime_UTR 40978942 40979009 40978942 ID=Msa1247750-mRNA-1:three_prime_utr;Parent=Msa1247750-mRNA-1
chr8_2 three_prime_UTR 40981806 40982090 40981806 ID=Msa1247750-mRNA-1:three_prime_utr;Parent=Msa1247750-mRNA-1
Gene Sequence

>Msa1247750

ATGATAATTTCATCCCATAAGTACTCTTTGGTTCATGCGGCTGCTTGTGCATATGATAGAGCTGCAATTAAGTTCAGAGGAGTAGAGGCAGATATAAATTTCAACATTGAAGATTATGAAGAGGATTTGAAGCTGGTAGTTCGTCTATGTTTCTTAATCTCAGGTATCAACTCTTTCAAGTTTTTCATGGCATACAAAGGATTTTTTATGGTCAACGATGAGCTTCTTCTGCAAGTATTTAAGAAGCGCAAGTCTCTTGGTGCCTTAGCGATGGTAAGAATGTGTAAAGCTCTAATGCCAGGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAAACTCTTCGTACTCAACTGCGATATTTGCCTCTGTCGAAGATGCTTGATGCTGATATCACTGATAGTGTTATCGGGGAAGGATGTGTGATTAAGAACTGCAAAATCTTCCATTCAGTGGTTGGGCTGCATTCTTGCATATCAGGAGGTGCGATTATTGAAGACACTTTGTTGATGGGCGCAGATTATTACGAGACAGAAGCTGATAAAAGTTTTTTGGCTGCTAAAGGCAGTGTTCCAATTGGTATTGGCAGAAACTCCCGTATCAAAAGAGCAATTGTTGACAAGAATGCTAGAATTGGAGAAAATGTGAAGGATGGTCGAGTAAGTTTTGAGGAATTTAAGGCAATGATGAAGACAAGAGGAGATTGGAAAATGGCATCTAGACAATATTTAAAAGCATTTCTAAATGCGTTAAGCTTCAGAATGTTTAAAGACAAATCTACGGGAGTAGCAACTAACTAA
Protein sequence

>Msa1247750

MIISSHKYSLVHAAACAYDRAAIKFRGVEADINFNIEDYEEDLKLVVRLCFLISGINSFKFFMAYKGFFMVNDELLLQVFKKRKSLGALAMVRMCKALMPGDEESMSDEAIWETLRTQLRYLPLSKMLDADITDSVIGEGCVIKNCKIFHSVVGLHSCISGGAIIEDTLLMGADYYETEADKSFLAAKGSVPIGIGRNSRIKRAIVDKNARIGENVKDGRVSFEEFKAMMKTRGDWKMASRQYLKAFLNALSFRMFKDKSTGVATN*