AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0281030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281030 MtrunA17_Chr5g0447341 93.069 101 7 0 105 205 377 477 9.32e-58 191
Msa0281030 MtrunA17_Chr3g0120471 82.178 101 15 1 105 205 376 473 2.67e-49 169
Msa0281030 MtrunA17_Chr7g0271011 40.458 131 69 2 79 204 371 497 1.16e-27 110
Msa0281030 MtrunA17_Chr3g0144731 45.000 100 55 0 105 204 23 122 1.27e-26 101
Msa0281030 MtrunA17_Chr3g0141761 43.000 100 57 0 105 204 392 491 2.21e-25 103
Msa0281030 MtrunA17_Chr4g0074531 50.000 100 50 0 105 204 383 482 1.37e-24 101
Msa0281030 MtrunA17_Chr4g0077071 88.000 50 6 0 105 154 32 81 1.86e-23 90.5
Msa0281030 MtrunA17_Chr4g0035171 43.000 100 57 0 105 204 390 489 4.86e-23 97.4
Msa0281030 MtrunA17_Chr6g0454161 80.392 51 10 0 151 201 125 175 3.59e-20 87.8
Msa0281030 MtrunA17_Chr4g0033371 91.176 34 3 0 206 239 421 454 3.14e-14 71.6
Msa0281030 MtrunA17_Chr5g0441571 41.441 111 59 2 16 121 141 250 4.70e-14 71.2
Msa0281030 MtrunA17_Chr5g0441651 39.640 111 61 2 16 121 149 258 4.26e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281030 AT5G48300.1 82.178 101 18 0 105 205 382 482 1.66e-51 175
Msa0281030 AT1G27680.1 44.860 107 58 1 105 210 380 486 2.58e-26 107
Msa0281030 AT5G19220.1 47.000 100 53 0 105 204 384 483 5.42e-25 103
Msa0281030 AT2G21590.2 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa0281030 AT2G21590.3 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa0281030 AT2G21590.5 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa0281030 AT2G21590.4 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa0281030 AT2G21590.7 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa0281030 AT2G21590.1 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa0281030 AT2G21590.6 42.000 100 58 0 105 204 385 484 2.67e-23 98.6
Msa0281030 AT4G39210.2 44.000 100 56 0 105 204 383 482 2.26e-22 95.9
Msa0281030 AT4G39210.1 44.000 100 56 0 105 204 383 482 2.26e-22 95.9
Msa0281030 AT1G05610.1 48.039 102 51 1 105 204 336 437 1.54e-20 90.5
Msa0281030 AT1G05610.2 48.039 102 51 1 105 204 342 443 1.57e-20 90.5

Find 90 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAATTTGTCTTCAAATT+TGG 0.102206 2_3:-16197265 Msa0281030:three_prime_UTR
TTTAGAAGCAAAGGAAATTA+AGG 0.221632 2_3:-16203725 Msa0281030:intron
AATTAAGCTTTCTTTGAATA+AGG 0.238635 2_3:+16203580 None:intergenic
AGAAAGCTTAATTGAAAGTA+TGG 0.246651 2_3:-16203570 Msa0281030:CDS
GTACAGTTTGAGAGTGTAAA+TGG 0.292311 2_3:-16197427 Msa0281030:three_prime_UTR
GGGCTGCATTCTTGCATATC+AGG 0.296848 2_3:-16198864 Msa0281030:CDS
CGGGGAAGGATGTGTGATTA+AGG 0.317043 2_3:-16199031 Msa0281030:intron
ATTTCCTTTGCTTCTAAAAT+CGG 0.330480 2_3:+16203730 None:intergenic
GAGGAAGAAACAAGAAGAAT+TGG 0.332205 2_3:-16203529 Msa0281030:CDS
TAATTGAAAGTATGGGGTTT+GGG 0.345729 2_3:-16203562 Msa0281030:CDS
ATGGGGTTTGGGTTTGCAAT+TGG 0.350878 2_3:-16203551 Msa0281030:CDS
TTAATTGAAAGTATGGGGTT+TGG 0.364955 2_3:-16203563 Msa0281030:CDS
GATGAACTCTTCACATTTGA+AGG 0.374057 2_3:+16197923 None:intergenic
GACAAGAGGAGATTGGAAAA+TGG 0.375067 2_3:-16197675 Msa0281030:three_prime_UTR
AGAAGAGAGAAGAGAGAAAA+GGG 0.376057 2_3:-16203897 Msa0281030:five_prime_UTR
GATATCACTGATAGTGTTAT+CGG 0.379793 2_3:-16199051 Msa0281030:CDS
ACGAAGGGACCGAGAGAAAC+AGG 0.383319 2_3:-16203854 Msa0281030:five_prime_UTR
CGTCTATGTTTCTTAATCTC+AGG 0.392267 2_3:-16202646 Msa0281030:CDS
GGCAGTGTTCCACTTGGTAT+TGG 0.399314 2_3:-16198586 Msa0281030:CDS
TATTGAAGACACTTTGTTGA+TGG 0.401901 2_3:-16198832 Msa0281030:CDS
GTTGACAAGAATGCTAGAAT+TGG 0.404186 2_3:-16198535 Msa0281030:CDS
GAGAAGAGAGAAGAGAGAAA+AGG 0.435926 2_3:-16203898 Msa0281030:five_prime_UTR
AAATCTTCCATTCAGTGGTT+GGG 0.441064 2_3:-16198884 Msa0281030:CDS
AAATTGCATGTCGTTAGAAA+AGG 0.441642 2_3:-16203923 Msa0281030:five_prime_UTR
TCTCCCGTTCCTGTTTCTCT+CGG 0.447250 2_3:+16203845 None:intergenic
GAAAGCTTAATTGAAAGTAT+GGG 0.452862 2_3:-16203569 Msa0281030:CDS
GGGTTTGGGTTTGCAATTGG+AGG 0.457079 2_3:-16203548 Msa0281030:CDS
TTATCCAAGTCGACATCGTT+GGG 0.457199 2_3:+16197844 None:intergenic
TGATGAAGACAAGAGGAGAT+TGG 0.460581 2_3:-16197682 Msa0281030:three_prime_UTR
CTGAATTTCAAATTGCATGT+GGG 0.467504 2_3:-16197556 Msa0281030:three_prime_UTR
CAACGATGTCGACTTGGATA+AGG 0.467770 2_3:-16197842 Msa0281030:CDS
ATATCACTGATAGTGTTATC+GGG 0.469841 2_3:-16199050 Msa0281030:CDS
ACAGGAACGGGAGAGGAAGA+AGG 0.470342 2_3:-16203836 Msa0281030:five_prime_UTR
AAAATCTTCCATTCAGTGGT+TGG 0.473513 2_3:-16198885 Msa0281030:CDS
AGAGAAACGGGAGAGGAAGA+AGG 0.475515 2_3:-16203975 Msa0281030:five_prime_UTR
TTTAAGAAGCGCAAGTCTCT+TGG 0.484148 2_3:-16202550 Msa0281030:CDS
AGAGAGAACGGAAGAGGAGA+GGG 0.484152 2_3:-16203807 Msa0281030:five_prime_UTR
GAAGAAACAAGAAGAATTGG+AGG 0.484939 2_3:-16203526 Msa0281030:intron
AGTGTTCACATGAGAAGGCT+TGG 0.497606 2_3:-16197894 Msa0281030:CDS
GGGGACGAGAGAAACGGGAG+AGG 0.500968 2_3:-16203982 Msa0281030:five_prime_UTR
GGACCGAGAGAAACAGGAAC+GGG 0.505385 2_3:-16203848 Msa0281030:five_prime_UTR
CATTCCCAACGATGTCGACT+TGG 0.506190 2_3:-16197848 Msa0281030:CDS
GCGACGAGAGAGAACGGAAG+AGG 0.507684 2_3:-16203813 Msa0281030:five_prime_UTR
GCATGCTGCTGAATAATTAG+TGG 0.510173 2_3:+16197480 None:intergenic
GAGAGAAACAGGAACGGGAG+AGG 0.518708 2_3:-16203843 Msa0281030:five_prime_UTR
ATTGAAGACACTTTGTTGAT+GGG 0.519372 2_3:-16198831 Msa0281030:CDS
AATGCAGCCCAACCACTGAA+TGG 0.520984 2_3:+16198877 None:intergenic
AGAAGGGCGACGAGAGAGAA+CGG 0.522224 2_3:-16203819 Msa0281030:five_prime_UTR
CAGGAACGGGAGAGGAAGAA+GGG 0.522491 2_3:-16203835 Msa0281030:five_prime_UTR
AAGGGAACGAGAGAAAGAAG+AGG 0.523683 2_3:-16203879 Msa0281030:five_prime_UTR
CTTATCCAAGTCGACATCGT+TGG 0.524700 2_3:+16197843 None:intergenic
AATTGCATGTCGTTAGAAAA+GGG 0.524800 2_3:-16203922 Msa0281030:five_prime_UTR
AATGTTTAAAGACAAATCTA+CGG 0.528586 2_3:-16197606 Msa0281030:three_prime_UTR
GAGAAACGGGAGAGGAAGAA+GGG 0.529600 2_3:-16203974 Msa0281030:five_prime_UTR
GAGAGAGAACGGAAGAGGAG+AGG 0.532551 2_3:-16203808 Msa0281030:five_prime_UTR
CAATGAGTGTTCACATGAGA+AGG 0.534579 2_3:-16197899 Msa0281030:CDS
ACTGAATTTCAAATTGCATG+TGG 0.539019 2_3:-16197557 Msa0281030:three_prime_UTR
ATCGGTGCAGATCAGAGTGT+TGG 0.543077 2_3:+16203748 None:intergenic
AAAGCTTAATTGAAAGTATG+GGG 0.546070 2_3:-16203568 Msa0281030:CDS
CAACATTGAAGATTATGAAG+AGG 0.549840 2_3:-16202821 Msa0281030:CDS
TATGATATGTACTCAGAACT+TGG 0.552496 2_3:+16197525 None:intergenic
GTGTTGGACGGCGAGGTCGA+CGG 0.559179 2_3:+16203764 None:intergenic
CTGCAAAATCTTCCATTCAG+TGG 0.561130 2_3:-16198889 Msa0281030:CDS
GTCTCTTGGTGCCTTAGCGA+TGG 0.562521 2_3:-16202536 Msa0281030:intron
TGAATTTCAAATTGCATGTG+GGG 0.562677 2_3:-16197555 Msa0281030:three_prime_UTR
AGAGAAAGAAGAGGGAACGA+AGG 0.563011 2_3:-16203870 Msa0281030:five_prime_UTR
ATGTCGACTTGGATAAGGTA+AGG 0.566871 2_3:-16197837 Msa0281030:intron
CCTCACACTTTCTTCAGATG+AGG 0.567909 2_3:+16197395 None:intergenic
TTATGAAGAGGATTTGAAGC+CGG 0.569826 2_3:-16202809 Msa0281030:intron
CTGCATTCTTGCATATCAGG+AGG 0.573281 2_3:-16198861 Msa0281030:CDS
GAGAAAGAAGAGGGAACGAA+GGG 0.574865 2_3:-16203869 Msa0281030:five_prime_UTR
ACTGATAGTGTTATCGGGGA+AGG 0.575346 2_3:-16199045 Msa0281030:CDS
ATGTTTAAAGACAAATCTAC+GGG 0.579761 2_3:-16197605 Msa0281030:three_prime_UTR
AATTAAGTTCAGAGGAGTAG+AGG 0.591705 2_3:-16202857 Msa0281030:CDS
AAACGGGAGAGGAAGAAGGG+TGG 0.593784 2_3:-16203971 Msa0281030:five_prime_UTR
AGAGCTGCAATTAAGTTCAG+AGG 0.598621 2_3:-16202865 Msa0281030:CDS
AGGGAACGAGAGAAAGAAGA+GGG 0.605408 2_3:-16203878 Msa0281030:five_prime_UTR
GCTAAAGGCAGTGTTCCACT+TGG 0.607159 2_3:-16198592 Msa0281030:CDS
GCATCAAGCATCTTTGACAG+AGG 0.620306 2_3:+16199075 None:intergenic
GGGACCGAGAGAAACAGGAA+CGG 0.630598 2_3:-16203849 Msa0281030:five_prime_UTR
GATCAGAGTGTTGGACGGCG+AGG 0.636768 2_3:+16203757 None:intergenic
AAGGCAATGATGAAGACAAG+AGG 0.640920 2_3:-16197689 Msa0281030:three_prime_UTR
TAGAATTGGAGAAAATGTGA+AGG 0.647495 2_3:-16198521 Msa0281030:intron
GAATTTCAAATTGCATGTGG+GGG 0.666111 2_3:-16197554 Msa0281030:three_prime_UTR
TTGGACGGCGAGGTCGACGG+CGG 0.673722 2_3:+16203767 None:intergenic
TATCACTGATAGTGTTATCG+GGG 0.674328 2_3:-16199049 Msa0281030:CDS
GTGCAGATCAGAGTGTTGGA+CGG 0.676123 2_3:+16203752 None:intergenic
GAGTTTCTGCCAATACCAAG+TGG 0.682922 2_3:+16198577 None:intergenic
GATGGGCGCATATTATTACG+AGG 0.683765 2_3:-16198814 Msa0281030:intron
CCTCATCTGAAGAAAGTGTG+AGG 0.684673 2_3:-16197395 Msa0281030:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATATTTATGATGT+TGG - chr2_3:16199045-16199064 Msa0281030:CDS 10.0%
!!! GTATTGATTTATTTATTTTT+GGG - chr2_3:16199580-16199599 Msa0281030:intron 10.0%
!!! TGGAATTTTAAAAAAATATT+TGG - chr2_3:16200245-16200264 Msa0281030:intron 10.0%
!!! TTTCTTCTATATTATTTTAA+TGG - chr2_3:16201126-16201145 Msa0281030:intron 10.0%
!!! AATAAGTTTTATATTTGTTT+TGG + chr2_3:16203154-16203173 None:intergenic 10.0%
!! AAATTGAATGTATAAATTGT+AGG - chr2_3:16198084-16198103 Msa0281030:intron 15.0%
!! AATTGAATGTATAAATTGTA+GGG - chr2_3:16198085-16198104 Msa0281030:intron 15.0%
!! AAAAATATTCTCAACATTAA+AGG + chr2_3:16198177-16198196 None:intergenic 15.0%
!!! TAATGTTGAGAATATTTTTT+CGG - chr2_3:16198178-16198197 Msa0281030:intron 15.0%
!!! AAATTTCATTCATTCTTTTA+TGG - chr2_3:16198265-16198284 Msa0281030:intron 15.0%
!! AATAATTGATTGAAAACTAT+AGG + chr2_3:16198489-16198508 None:intergenic 15.0%
!! TAAAAAATTTACACTTTAGT+AGG + chr2_3:16199188-16199207 None:intergenic 15.0%
!!! GGTATTGATTTATTTATTTT+TGG - chr2_3:16199579-16199598 Msa0281030:intron 15.0%
!! AAAAAAATATTTGGTTGATT+TGG - chr2_3:16200254-16200273 Msa0281030:intron 15.0%
!! TTAATTCAATTATGTTATGA+TGG - chr2_3:16200669-16200688 Msa0281030:intron 15.0%
!! TATAATGAAAAAAATGAACT+TGG - chr2_3:16203233-16203252 Msa0281030:intron 15.0%
!!! ATCTAATATTGTTTTGTTAA+AGG - chr2_3:16203483-16203502 Msa0281030:intron 15.0%
!!! AATTAATTTGTCTTCAAATT+TGG - chr2_3:16203956-16203975 Msa0281030:five_prime_UTR 15.0%
!! TTCATTGAGAAATTGAAATT+GGG + chr2_3:16197591-16197610 None:intergenic 20.0%
!! AATTTCAATTTCTCAATGAA+GGG - chr2_3:16197591-16197610 Msa0281030:three_prime_UTR 20.0%
!! AATTAAGCTTTCTTTGAATA+AGG + chr2_3:16197644-16197663 None:intergenic 20.0%
!!! TGTAATTGTTTTATGATGAA+TGG - chr2_3:16198123-16198142 Msa0281030:intron 20.0%
!!! AATGTTGAGAATATTTTTTC+GGG - chr2_3:16198179-16198198 Msa0281030:intron 20.0%
!! CAATTCAAGATACAAAAAAA+AGG + chr2_3:16198513-16198532 None:intergenic 20.0%
!!! AATTTTAACTTCAATGTGAA+TGG - chr2_3:16198894-16198913 Msa0281030:CDS 20.0%
!! ATCAATTGAAGTCAATAATT+TGG + chr2_3:16199227-16199246 None:intergenic 20.0%
!!! ATCTAAATTCTAAAGCATTA+TGG + chr2_3:16199375-16199394 None:intergenic 20.0%
!!! GTTATTGAAATTTTTGCAAA+TGG - chr2_3:16199558-16199577 Msa0281030:intron 20.0%
!!! GATTTATTTATTTTTGGGAA+TGG - chr2_3:16199585-16199604 Msa0281030:intron 20.0%
!! TAAAATCTAATTGATACTGA+TGG - chr2_3:16199765-16199784 Msa0281030:intron 20.0%
!!! TTAACAGACTTTAATTTTTG+TGG - chr2_3:16199855-16199874 Msa0281030:intron 20.0%
!! CGAATTTGGAAAAAAAAATT+TGG - chr2_3:16199945-16199964 Msa0281030:intron 20.0%
!!! AGCTTTCTATTGATAATTTT+TGG - chr2_3:16200165-16200184 Msa0281030:intron 20.0%
!!! TATTGATAATTTTTGGTTTG+TGG - chr2_3:16200172-16200191 Msa0281030:intron 20.0%
!!! TTAGTTATTCTTTTGAGTTT+TGG - chr2_3:16200225-16200244 Msa0281030:intron 20.0%
!!! AAATTTTGTCTATTTTCCAA+TGG + chr2_3:16200446-16200465 None:intergenic 20.0%
!! AATGTTCATGTTGAAATATT+TGG - chr2_3:16200750-16200769 Msa0281030:intron 20.0%
!! TTCTATTCACATGTAAATAA+AGG + chr2_3:16201523-16201542 None:intergenic 20.0%
!! TTGTTCTTTATGTTATGTAA+TGG + chr2_3:16201550-16201569 None:intergenic 20.0%
!! TAAGAATTGATCAAAATAGA+AGG - chr2_3:16201903-16201922 Msa0281030:intron 20.0%
!!! ATGGATTAGAAAGTAAAATA+GGG + chr2_3:16202759-16202778 None:intergenic 20.0%
!!! ATATTTGTTTTGGATAATGA+TGG + chr2_3:16203144-16203163 None:intergenic 20.0%
!!! AATATTGTTTTGTTAAAGGA+TGG - chr2_3:16203487-16203506 Msa0281030:intron 20.0%
!! AATGTTTAAAGACAAATCTA+CGG - chr2_3:16203615-16203634 Msa0281030:intron 20.0%
!!! ATTTCCTTTGCTTCTAAAAT+CGG + chr2_3:16197494-16197513 None:intergenic 25.0%
! TTTAGAAGCAAAGGAAATTA+AGG - chr2_3:16197496-16197515 Msa0281030:three_prime_UTR 25.0%
! TCATTGAGAAATTGAAATTG+GGG + chr2_3:16197590-16197609 None:intergenic 25.0%
! CTTCATTGAGAAATTGAAAT+TGG + chr2_3:16197592-16197611 None:intergenic 25.0%
! CAATTTCAATTTCTCAATGA+AGG - chr2_3:16197590-16197609 Msa0281030:three_prime_UTR 25.0%
! AGAAAGCTTAATTGAAAGTA+TGG - chr2_3:16197651-16197670 Msa0281030:three_prime_UTR 25.0%
!! GAAAGCTTAATTGAAAGTAT+GGG - chr2_3:16197652-16197671 Msa0281030:three_prime_UTR 25.0%
!! AAAGCTTAATTGAAAGTATG+GGG - chr2_3:16197653-16197672 Msa0281030:three_prime_UTR 25.0%
! TGTAAATCATTTCTGTTTGA+TGG - chr2_3:16197736-16197755 Msa0281030:intron 25.0%
! TCTGTTTAAGAAGATACATA+GGG - chr2_3:16197785-16197804 Msa0281030:intron 25.0%
! AAATCAGATACAAAGGAAAA+TGG + chr2_3:16197872-16197891 None:intergenic 25.0%
!! ATTTTCCTTTGTATCTGATT+TGG - chr2_3:16197871-16197890 Msa0281030:CDS 25.0%
!! TTTTACCAAATCAGATACAA+AGG + chr2_3:16197879-16197898 None:intergenic 25.0%
!! AAAAAGCTATTTCACAATAC+TGG + chr2_3:16197907-16197926 None:intergenic 25.0%
! TATGATAATTTCATCCCATA+AGG - chr2_3:16198037-16198056 Msa0281030:intron 25.0%
! TTACATAGAACATACCTTAT+GGG + chr2_3:16198054-16198073 None:intergenic 25.0%
! TTTACATAGAACATACCTTA+TGG + chr2_3:16198055-16198074 None:intergenic 25.0%
!! TCTGAAAATCAATTTGTTTC+AGG - chr2_3:16198146-16198165 Msa0281030:intron 25.0%
!!! ATGTTGAGAATATTTTTTCG+GGG - chr2_3:16198180-16198199 Msa0281030:intron 25.0%
! TGTTGTGATTTAAATGAGTT+TGG - chr2_3:16198531-16198550 Msa0281030:CDS 25.0%
! TATATCGATGTAACAAAAAC+TGG + chr2_3:16199132-16199151 None:intergenic 25.0%
! TCAGAATACTTAAGTACAAA+AGG - chr2_3:16199153-16199172 Msa0281030:intron 25.0%
!!! TTATCTAGTTGATTTTTCTG+TGG + chr2_3:16199431-16199450 None:intergenic 25.0%
! AACTAGATAAATCTTTGATG+TGG - chr2_3:16199441-16199460 Msa0281030:intron 25.0%
! TAAATCTTTGATGTGGTATT+TGG - chr2_3:16199448-16199467 Msa0281030:intron 25.0%
!!! CTTTAATTTTTGTGGTTTTG+TGG - chr2_3:16199863-16199882 Msa0281030:intron 25.0%
!! TTTTTCCAAATTCGAAAACT+CGG + chr2_3:16199939-16199958 None:intergenic 25.0%
! CTAAAAACATACACAATCTA+AGG + chr2_3:16200116-16200135 None:intergenic 25.0%
! GACAAAATTTAACACGAAAT+AGG - chr2_3:16200456-16200475 Msa0281030:intron 25.0%
! AATTTCTGTCTTCTTTCTAA+TGG + chr2_3:16200624-16200643 None:intergenic 25.0%
!! GACAGAAATTAACTTGAAAT+AGG - chr2_3:16200634-16200653 Msa0281030:intron 25.0%
!! AATTAACTTGAAATAGGCTT+TGG - chr2_3:16200640-16200659 Msa0281030:intron 25.0%
!! ATTCAAAATTTTGTGATGCT+TGG - chr2_3:16201186-16201205 Msa0281030:intron 25.0%
!! ACATAAAGAACAAAAAGTGT+TGG - chr2_3:16201557-16201576 Msa0281030:intron 25.0%
!! GTCAATTTTTGAATCCTTTT+TGG - chr2_3:16201734-16201753 Msa0281030:intron 25.0%
! GTTGGTTAAATATACCAAAA+AGG + chr2_3:16201751-16201770 None:intergenic 25.0%
!! TCATTAGTGTGTATCATTTT+TGG - chr2_3:16202064-16202083 Msa0281030:intron 25.0%
!!! CATTAGTGTGTATCATTTTT+GGG - chr2_3:16202065-16202084 Msa0281030:intron 25.0%
!!! AGAAGCTGATAAAAGTTTTT+TGG - chr2_3:16202604-16202623 Msa0281030:CDS 25.0%
!!! GATGGATTAGAAAGTAAAAT+AGG + chr2_3:16202760-16202779 None:intergenic 25.0%
! TATTAAGCTTGACAAATTGT+TGG - chr2_3:16202786-16202805 Msa0281030:intron 25.0%
! ACTTAAAAAGACCAAAGATT+AGG + chr2_3:16202840-16202859 None:intergenic 25.0%
! ACACCTTCAATAAAAAATGT+CGG + chr2_3:16202965-16202984 None:intergenic 25.0%
! TTGTTAAAGCTATCTAAATC+TGG + chr2_3:16203178-16203197 None:intergenic 25.0%
!!! AGTAAGTTTTGAGGAATTTA+AGG - chr2_3:16203513-16203532 Msa0281030:intron 25.0%
! ATGTTTAAAGACAAATCTAC+GGG - chr2_3:16203616-16203635 Msa0281030:intron 25.0%
AAATTGCATGTCGTTAGAAA+AGG - chr2_3:16197298-16197317 Msa0281030:three_prime_UTR 30.0%
AATTGCATGTCGTTAGAAAA+GGG - chr2_3:16197299-16197318 Msa0281030:three_prime_UTR 30.0%
! TTAATTGAAAGTATGGGGTT+TGG - chr2_3:16197658-16197677 Msa0281030:three_prime_UTR 30.0%
! TAATTGAAAGTATGGGGTTT+GGG - chr2_3:16197659-16197678 Msa0281030:three_prime_UTR 30.0%
GTCTGTTTAAGAAGATACAT+AGG - chr2_3:16197784-16197803 Msa0281030:intron 30.0%
ATGGTTGAATTTGATCTGAA+TGG - chr2_3:16197810-16197829 Msa0281030:intron 30.0%
!!! TGTTGAGAATATTTTTTCGG+GGG - chr2_3:16198181-16198200 Msa0281030:intron 30.0%
CAACATTGAAGATTATGAAG+AGG - chr2_3:16198400-16198419 Msa0281030:intron 30.0%
TGTGATTTAAATGAGTTTGG+AGG - chr2_3:16198534-16198553 Msa0281030:CDS 30.0%
AGTTTGGAGGAATTTATTTC+AGG - chr2_3:16198547-16198566 Msa0281030:CDS 30.0%
!!! CAACTCTTTCAAGTTTTTCA+TGG - chr2_3:16198601-16198620 Msa0281030:CDS 30.0%
! AAGTTTTTCATGGCATACAA+AGG - chr2_3:16198611-16198630 Msa0281030:CDS 30.0%
!!! GGCATACAAAGGATTTTTTA+TGG - chr2_3:16198622-16198641 Msa0281030:CDS 30.0%
!! TAGTTCTGATTATTGTGATC+TGG - chr2_3:16198774-16198793 Msa0281030:intron 30.0%
!!! CATCTTTTTTCTCTTCTGTT+TGG - chr2_3:16199306-16199325 Msa0281030:intron 30.0%
GGTCTATGATGGTTAAAATT+TGG - chr2_3:16199531-16199550 Msa0281030:intron 30.0%
AACCATCATACACATAAGAA+AGG + chr2_3:16199627-16199646 None:intergenic 30.0%
TGTGTATGATGGTTCAAATT+TGG - chr2_3:16199633-16199652 Msa0281030:intron 30.0%
! GTGACATTGTAACTTTTGTA+AGG + chr2_3:16199802-16199821 None:intergenic 30.0%
!!! TGGTTTTGTGGTTAATGTTA+AGG - chr2_3:16199875-16199894 Msa0281030:intron 30.0%
!!! TGTTTTTAGTGAGTTGTGTA+TGG - chr2_3:16200127-16200146 Msa0281030:intron 30.0%
TCAATAGAAAGCTTGAACAA+AGG + chr2_3:16200158-16200177 None:intergenic 30.0%
!!! TGATAATTTTTGGTTTGTGG+TGG - chr2_3:16200175-16200194 Msa0281030:intron 30.0%
! TGGTTGTGTGATTTTGTTAA+AGG - chr2_3:16200274-16200293 Msa0281030:intron 30.0%
TACAAACCAATTGATAGAGA+AGG - chr2_3:16200305-16200324 Msa0281030:intron 30.0%
ACAAATCCTTCTCTATCAAT+TGG + chr2_3:16200314-16200333 None:intergenic 30.0%
! TTGATAGAGAAGGATTTGTT+TGG - chr2_3:16200315-16200334 Msa0281030:intron 30.0%
!! GGTGGAATTTTAAGAAATGT+TGG - chr2_3:16200342-16200361 Msa0281030:intron 30.0%
TAGACCTACTGTTAGAAAAA+TGG - chr2_3:16200377-16200396 Msa0281030:intron 30.0%
!! ATGACCATTTTTCTAACAGT+AGG + chr2_3:16200384-16200403 None:intergenic 30.0%
TTGAGTGAAAATTGAACCAT+TGG - chr2_3:16200427-16200446 Msa0281030:intron 30.0%
GTAAAAATCTGAACTGTTGT+TGG - chr2_3:16200546-16200565 Msa0281030:intron 30.0%
TTCATACATCAGTTTGCAAT+AGG - chr2_3:16200591-16200610 Msa0281030:intron 30.0%
AAAATCTGCTCTAATGTAGT+TGG - chr2_3:16200727-16200746 Msa0281030:intron 30.0%
! TCATAAACACATTTTACCCA+AGG + chr2_3:16200955-16200974 None:intergenic 30.0%
!!! TATGTTTGTTGTAGCACTTT+TGG - chr2_3:16201308-16201327 Msa0281030:intron 30.0%
!!! ATGTTTGTTGTAGCACTTTT+GGG - chr2_3:16201309-16201328 Msa0281030:intron 30.0%
!! CACATGTAAATAAAGGTGTT+TGG + chr2_3:16201516-16201535 None:intergenic 30.0%
!! GAAAGTGTTTCTTCAATTCA+TGG - chr2_3:16201621-16201640 Msa0281030:intron 30.0%
TGGTACTAATGTGCATTTAA+AGG + chr2_3:16201676-16201695 None:intergenic 30.0%
TAAGTCTACTTCAATTGAGA+GGG + chr2_3:16201704-16201723 None:intergenic 30.0%
ATAAGTCTACTTCAATTGAG+AGG + chr2_3:16201705-16201724 None:intergenic 30.0%
!!! AGTCATGATTGTGCTATTTT+TGG - chr2_3:16202041-16202060 Msa0281030:intron 30.0%
! GATATCACTGATAGTGTTAT+CGG - chr2_3:16202170-16202189 Msa0281030:intron 30.0%
! ATATCACTGATAGTGTTATC+GGG - chr2_3:16202171-16202190 Msa0281030:intron 30.0%
TATTGAAGACACTTTGTTGA+TGG - chr2_3:16202389-16202408 Msa0281030:intron 30.0%
ATTGAAGACACTTTGTTGAT+GGG - chr2_3:16202390-16202409 Msa0281030:intron 30.0%
AGAAAATCAATGTTGCAGTT+AGG + chr2_3:16202573-16202592 None:intergenic 30.0%
!!! AAAAGTTTTTTGGCTGCTAA+AGG - chr2_3:16202614-16202633 Msa0281030:CDS 30.0%
! AACAATTGCTCTTTTGATAC+GGG + chr2_3:16202669-16202688 None:intergenic 30.0%
! CAACAATTGCTCTTTTGATA+CGG + chr2_3:16202670-16202689 None:intergenic 30.0%
TAGAATTGGAGAAAATGTGA+AGG - chr2_3:16202700-16202719 Msa0281030:intron 30.0%
! GGAATGAAAGTGTATATAGT+TGG + chr2_3:16202738-16202757 None:intergenic 30.0%
TCAAGCTTAATATGAGAAGA+TGG + chr2_3:16202778-16202797 None:intergenic 30.0%
!!! TTTTTTATTGAAGGTGTGTC+TGG - chr2_3:16202968-16202987 Msa0281030:intron 30.0%
TCGCAGTTTATTATTAGTGT+TGG - chr2_3:16203035-16203054 Msa0281030:intron 30.0%
GAAGGAAATCAGGTTATATT+CGG + chr2_3:16203099-16203118 None:intergenic 30.0%
TATAACCTGATTTCCTTCAT+AGG - chr2_3:16203101-16203120 Msa0281030:intron 30.0%
! GGTTATTAATTGATGACAAC+AGG - chr2_3:16203254-16203273 Msa0281030:intron 30.0%
ACTGAATTTCAAATTGCATG+TGG - chr2_3:16203664-16203683 Msa0281030:intron 30.0%
CTGAATTTCAAATTGCATGT+GGG - chr2_3:16203665-16203684 Msa0281030:intron 30.0%
TGAATTTCAAATTGCATGTG+GGG - chr2_3:16203666-16203685 Msa0281030:intron 30.0%
TATGATATGTACTCAGAACT+TGG + chr2_3:16203699-16203718 None:intergenic 30.0%
! GAGAGTGTAAATGGAAAAAT+AGG - chr2_3:16203803-16203822 Msa0281030:five_prime_UTR 30.0%
AGAAGAGAGAAGAGAGAAAA+GGG - chr2_3:16197324-16197343 Msa0281030:three_prime_UTR 35.0%
ATTGAAATTGGGGCTGAAAA+GGG + chr2_3:16197580-16197599 None:intergenic 35.0%
AATTGAAATTGGGGCTGAAA+AGG + chr2_3:16197581-16197600 None:intergenic 35.0%
GAGGAAGAAACAAGAAGAAT+TGG - chr2_3:16197692-16197711 Msa0281030:three_prime_UTR 35.0%
GAAGAAACAAGAAGAATTGG+AGG - chr2_3:16197695-16197714 Msa0281030:three_prime_UTR 35.0%
TAAGAAGATACATAGGGACA+TGG - chr2_3:16197791-16197810 Msa0281030:intron 35.0%
AATTAAGTTCAGAGGAGTAG+AGG - chr2_3:16198364-16198383 Msa0281030:intron 35.0%
! TTATGAAGAGGATTTGAAGC+CGG - chr2_3:16198412-16198431 Msa0281030:intron 35.0%
CGTCTATGTTTCTTAATCTC+AGG - chr2_3:16198575-16198594 Msa0281030:CDS 35.0%
AAAAAACCTTACCATCGCTA+AGG + chr2_3:16198699-16198718 None:intergenic 35.0%
! CAAGTTTCAGTATTTTCGCA+TGG - chr2_3:16198977-16198996 Msa0281030:intron 35.0%
CGCATGGAGTATAAGAAAAT+TGG - chr2_3:16198993-16199012 Msa0281030:intron 35.0%
GCTTTGCTTATTATGCATTC+AGG - chr2_3:16199083-16199102 Msa0281030:CDS 35.0%
TTACACTTTAGTAGGAGATG+AGG + chr2_3:16199180-16199199 None:intergenic 35.0%
TGCCTTTCTTATGTGTATGA+TGG - chr2_3:16199622-16199641 Msa0281030:intron 35.0%
TGTTGTTGAAAGCTTTGCTT+TGG - chr2_3:16199659-16199678 Msa0281030:intron 35.0%
! TTCAACCGAGTTTTCGAATT+TGG - chr2_3:16199931-16199950 Msa0281030:intron 35.0%
!!! TGTGTGTAGAAGTACTTTTC+TGG - chr2_3:16200006-16200025 Msa0281030:intron 35.0%
GAGCATATTGTTGATCTGAA+AGG - chr2_3:16200088-16200107 Msa0281030:intron 35.0%
!!! TAATTTTTGGTTTGTGGTGG+AGG - chr2_3:16200178-16200197 Msa0281030:intron 35.0%
! GAGAAGGATTTGTTTGGTTA+TGG - chr2_3:16200321-16200340 Msa0281030:intron 35.0%
! AAGGATTTGTTTGGTTATGG+TGG - chr2_3:16200324-16200343 Msa0281030:intron 35.0%
ATTTAACACGAAATAGGCTC+TGG - chr2_3:16200462-16200481 Msa0281030:intron 35.0%
! AATCCTTGTCATTTCAATCC+GGG + chr2_3:16200783-16200802 None:intergenic 35.0%
! CAATCCTTGTCATTTCAATC+CGG + chr2_3:16200784-16200803 None:intergenic 35.0%
! AGAGTGTTCAGAATAAGTCA+TGG - chr2_3:16200902-16200921 Msa0281030:intron 35.0%
! AACACATTTTACCCAAGGTA+AGG + chr2_3:16200950-16200969 None:intergenic 35.0%
AACGAAGAACAACATAGAGA+TGG + chr2_3:16201338-16201357 None:intergenic 35.0%
ATGCTAGAACTGATGATTCA+TGG + chr2_3:16201368-16201387 None:intergenic 35.0%
! ATGAATCATCAGTTCTAGCA+TGG - chr2_3:16201367-16201386 Msa0281030:intron 35.0%
ACATAGTTGCAAAACTCCAA+GGG + chr2_3:16201443-16201462 None:intergenic 35.0%
AACATAGTTGCAAAACTCCA+AGG + chr2_3:16201444-16201463 None:intergenic 35.0%
!! AAGAACAAAAAGTGTTGGTC+AGG - chr2_3:16201562-16201581 Msa0281030:intron 35.0%
CTCACATGAAAGCTAACAAT+TGG - chr2_3:16201773-16201792 Msa0281030:intron 35.0%
TATCGCAGTTGAGTCTAAAT+TGG + chr2_3:16202122-16202141 None:intergenic 35.0%
! TATCACTGATAGTGTTATCG+GGG - chr2_3:16202172-16202191 Msa0281030:intron 35.0%
! ATGGAAGATTTTGCAGTTCT+AGG + chr2_3:16202328-16202347 None:intergenic 35.0%
AAAATCTTCCATTCAGTGGT+TGG - chr2_3:16202336-16202355 Msa0281030:intron 35.0%
AAATCTTCCATTCAGTGGTT+GGG - chr2_3:16202337-16202356 Msa0281030:intron 35.0%
ATGCAGCTCAATTCATTCAT+TGG - chr2_3:16202522-16202541 Msa0281030:intron 35.0%
!! ATTGGCTTGTGTAAGTTACA+AGG - chr2_3:16202540-16202559 Msa0281030:CDS 35.0%
GTTGACAAGAATGCTAGAAT+TGG - chr2_3:16202686-16202705 Msa0281030:intron 35.0%
AAACATAGATTGCCTTCTTG+CGG - chr2_3:16202891-16202910 Msa0281030:intron 35.0%
!!! GCACCGACATTTTTTATTGA+AGG - chr2_3:16202959-16202978 Msa0281030:intron 35.0%
TTTCCTTCATAGGAAAGCTT+TGG - chr2_3:16203111-16203130 Msa0281030:intron 35.0%
GATGAACTCTTCACATTTGA+AGG + chr2_3:16203301-16203320 None:intergenic 35.0%
GAATTTCAAATTGCATGTGG+GGG - chr2_3:16203667-16203686 Msa0281030:intron 35.0%
! GTACAGTTTGAGAGTGTAAA+TGG - chr2_3:16203794-16203813 Msa0281030:five_prime_UTR 35.0%
GAGAAGAGAGAAGAGAGAAA+AGG - chr2_3:16197323-16197342 Msa0281030:three_prime_UTR 40.0%
!!! TGCACCGATTTTAGAAGCAA+AGG - chr2_3:16197487-16197506 Msa0281030:three_prime_UTR 40.0%
GAATTTGATCTGAATGGTGC+TGG - chr2_3:16197816-16197835 Msa0281030:intron 40.0%
AGAGCTGCAATTAAGTTCAG+AGG - chr2_3:16198356-16198375 Msa0281030:intron 40.0%
! ATTTGAAGCCGGTGAGTTAT+GGG - chr2_3:16198423-16198442 Msa0281030:intron 40.0%
TATTCTTCCCCATAACTCAC+CGG + chr2_3:16198434-16198453 None:intergenic 40.0%
! TTTAAGAAGCGCAAGTCTCT+TGG - chr2_3:16198671-16198690 Msa0281030:intron 40.0%
! TGATGTTGGCTACTTTGTGA+TGG - chr2_3:16199059-16199078 Msa0281030:CDS 40.0%
ATTCAGGTGTCTTTCTTGCT+GGG - chr2_3:16199099-16199118 Msa0281030:intron 40.0%
!! TGGCTGTTTCTTCTTGTGAT+TGG - chr2_3:16199326-16199345 Msa0281030:intron 40.0%
ACCATCATAGACCAGTCATT+GGG + chr2_3:16199524-16199543 None:intergenic 40.0%
AACCATCATAGACCAGTCAT+TGG + chr2_3:16199525-16199544 None:intergenic 40.0%
! AATGTGACTTGCCAAACTCA+GGG - chr2_3:16199713-16199732 Msa0281030:intron 40.0%
TAAGAGCAAGAGAAGAGAAG+AGG - chr2_3:16200829-16200848 Msa0281030:intron 40.0%
AAGAGCAAGAGAAGAGAAGA+GGG - chr2_3:16200830-16200849 Msa0281030:intron 40.0%
!! CAATGGCAAGAGCTTTGAAT+TGG - chr2_3:16200865-16200884 Msa0281030:intron 40.0%
!! GGTAAGGCTCTAAGCTAAAA+AGG + chr2_3:16200934-16200953 None:intergenic 40.0%
! TTTAGCTTAGAGCCTTACCT+TGG - chr2_3:16200935-16200954 Msa0281030:intron 40.0%
TTAGCTTAGAGCCTTACCTT+GGG - chr2_3:16200936-16200955 Msa0281030:intron 40.0%
! TGTGTAAAGCTCTAATGCCA+AGG - chr2_3:16201065-16201084 Msa0281030:intron 40.0%
! GTGTAAAGCTCTAATGCCAA+GGG - chr2_3:16201066-16201085 Msa0281030:intron 40.0%
CATAGTTGCAAAACTCCAAG+GGG + chr2_3:16201442-16201461 None:intergenic 40.0%
CTTCAATTGAGAGGGAGTTA+TGG + chr2_3:16201696-16201715 None:intergenic 40.0%
! TTAGCTTTCATGTGAGCAGT+TGG + chr2_3:16201769-16201788 None:intergenic 40.0%
TCCACTTCACAACTTATCTG+CGG + chr2_3:16201834-16201853 None:intergenic 40.0%
CTGCAAAATCTTCCATTCAG+TGG - chr2_3:16202332-16202351 Msa0281030:intron 40.0%
GACCAAAGATTAGGAACAGA+GGG + chr2_3:16202831-16202850 None:intergenic 40.0%
AGACCAAAGATTAGGAACAG+AGG + chr2_3:16202832-16202851 None:intergenic 40.0%
GCTTTCCTATGAAGGAAATC+AGG + chr2_3:16203109-16203128 None:intergenic 40.0%
! TGACAACAGGCAGATTTTGA+TGG - chr2_3:16203267-16203286 Msa0281030:intron 40.0%
!! CAGGCAGATTTTGATGGAAA+TGG - chr2_3:16203273-16203292 Msa0281030:intron 40.0%
CAATGAGTGTTCACATGAGA+AGG - chr2_3:16203322-16203341 Msa0281030:intron 40.0%
TTATCCAAGTCGACATCGTT+GGG + chr2_3:16203380-16203399 None:intergenic 40.0%
!! ATGTCGACTTGGATAAGGTA+AGG - chr2_3:16203384-16203403 Msa0281030:intron 40.0%
AAGGCAATGATGAAGACAAG+AGG - chr2_3:16203532-16203551 Msa0281030:CDS 40.0%
TGATGAAGACAAGAGGAGAT+TGG - chr2_3:16203539-16203558 Msa0281030:CDS 40.0%
GACAAGAGGAGATTGGAAAA+TGG - chr2_3:16203546-16203565 Msa0281030:CDS 40.0%
GCATGCTGCTGAATAATTAG+TGG + chr2_3:16203744-16203763 None:intergenic 40.0%
AAGGGAACGAGAGAAAGAAG+AGG - chr2_3:16197342-16197361 Msa0281030:three_prime_UTR 45.0%
AGGGAACGAGAGAAAGAAGA+GGG - chr2_3:16197343-16197362 Msa0281030:three_prime_UTR 45.0%
AGAGAAAGAAGAGGGAACGA+AGG - chr2_3:16197351-16197370 Msa0281030:three_prime_UTR 45.0%
GAGAAAGAAGAGGGAACGAA+GGG - chr2_3:16197352-16197371 Msa0281030:three_prime_UTR 45.0%
ATTGGGGCTGAAAAGGGTTA+GGG + chr2_3:16197574-16197593 None:intergenic 45.0%
AATTGGGGCTGAAAAGGGTT+AGG + chr2_3:16197575-16197594 None:intergenic 45.0%
! ATGGGGTTTGGGTTTGCAAT+TGG - chr2_3:16197670-16197689 Msa0281030:three_prime_UTR 45.0%
! TTGATCTGAATGGTGCTGGA+TGG - chr2_3:16197820-16197839 Msa0281030:intron 45.0%
! GATTTGAAGCCGGTGAGTTA+TGG - chr2_3:16198422-16198441 Msa0281030:intron 45.0%
! TTTGAAGCCGGTGAGTTATG+GGG - chr2_3:16198424-16198443 Msa0281030:intron 45.0%
CATTCAGGTGTCTTTCTTGC+TGG - chr2_3:16199098-16199117 Msa0281030:intron 45.0%
AAGCATACACTCCCAATGAC+TGG - chr2_3:16199510-16199529 Msa0281030:intron 45.0%
!! TCCCAATGACTGGTCTATGA+TGG - chr2_3:16199520-16199539 Msa0281030:intron 45.0%
! GAATGTGACTTGCCAAACTC+AGG - chr2_3:16199712-16199731 Msa0281030:intron 45.0%
! ATGTGACTTGCCAAACTCAG+GGG - chr2_3:16199714-16199733 Msa0281030:intron 45.0%
! GAAATATTTGGTTCACCGCC+CGG - chr2_3:16200762-16200781 Msa0281030:intron 45.0%
! GAGTTGCTTTCTTCATCCCT+TGG + chr2_3:16201085-16201104 None:intergenic 45.0%
! TTGGTGTGTTACTGTCGTCA+AGG - chr2_3:16201205-16201224 Msa0281030:intron 45.0%
TGTTACTGTCGTCAAGGTCT+TGG - chr2_3:16201211-16201230 Msa0281030:intron 45.0%
ATCATGTGTATGCAACCCCT+TGG - chr2_3:16201424-16201443 Msa0281030:intron 45.0%
CCACTTCACAACTTATCTGC+GGG + chr2_3:16201833-16201852 None:intergenic 45.0%
GCATCAAGCATCTTTGACAG+AGG + chr2_3:16202149-16202168 None:intergenic 45.0%
! ACTGATAGTGTTATCGGGGA+AGG - chr2_3:16202176-16202195 Msa0281030:intron 45.0%
CTGCATTCTTGCATATCAGG+AGG - chr2_3:16202360-16202379 Msa0281030:intron 45.0%
GATGGGCGCATATTATTACG+AGG - chr2_3:16202407-16202426 Msa0281030:intron 45.0%
GAGTTTCTGCCAATACCAAG+TGG + chr2_3:16202647-16202666 None:intergenic 45.0%
GAACAGAGGGAGTAGATGAT+GGG + chr2_3:16202818-16202837 None:intergenic 45.0%
CTCCCTCTGTTCCTAATCTT+TGG - chr2_3:16202826-16202845 Msa0281030:CDS 45.0%
CACACATGTTGCTGTCATGT+CGG + chr2_3:16202997-16203016 None:intergenic 45.0%
CAGCCAAAGCTTTCCTATGA+AGG + chr2_3:16203117-16203136 None:intergenic 45.0%
AGTGTTCACATGAGAAGGCT+TGG - chr2_3:16203327-16203346 Msa0281030:intron 45.0%
CTTATCCAAGTCGACATCGT+TGG + chr2_3:16203381-16203400 None:intergenic 45.0%
!! CAACGATGTCGACTTGGATA+AGG - chr2_3:16203379-16203398 Msa0281030:intron 45.0%
! GGATGGTCGAGTAAGTTTTG+AGG - chr2_3:16203504-16203523 Msa0281030:intron 45.0%
! CAAATTGCATGTGGGGGTAT+AGG - chr2_3:16203673-16203692 Msa0281030:intron 45.0%
CCTCACACTTTCTTCAGATG+AGG + chr2_3:16203829-16203848 None:intergenic 45.0%
! CCTCATCTGAAGAAAGTGTG+AGG - chr2_3:16203826-16203845 Msa0281030:five_prime_UTR 45.0%
!! ATATATATATATATATATCA+AGG - chr2_3:16199282-16199301 Msa0281030:intron 5.0%
AGAGAAACGGGAGAGGAAGA+AGG - chr2_3:16197246-16197265 Msa0281030:three_prime_UTR 50.0%
GAGAAACGGGAGAGGAAGAA+GGG - chr2_3:16197247-16197266 Msa0281030:three_prime_UTR 50.0%
! TCTCCCGTTCCTGTTTCTCT+CGG + chr2_3:16197379-16197398 None:intergenic 50.0%
AGAGAGAACGGAAGAGGAGA+GGG - chr2_3:16197414-16197433 Msa0281030:three_prime_UTR 50.0%
!! GTGCAGATCAGAGTGTTGGA+CGG + chr2_3:16197472-16197491 None:intergenic 50.0%
ATCGGTGCAGATCAGAGTGT+TGG + chr2_3:16197476-16197495 None:intergenic 50.0%
GGCTGAAAAGGGTTAGGGTT+TGG + chr2_3:16197569-16197588 None:intergenic 50.0%
! GGGTTTGGGTTTGCAATTGG+AGG - chr2_3:16197673-16197692 Msa0281030:three_prime_UTR 50.0%
CGGGGGTTATCAGTACTCTT+TGG - chr2_3:16198198-16198217 Msa0281030:intron 50.0%
! CTTTGGTTCATGCAGCTGCT+TGG - chr2_3:16198215-16198234 Msa0281030:intron 50.0%
! TTGGTGCCTTAGCGATGGTA+AGG - chr2_3:16198690-16198709 Msa0281030:intron 50.0%
TGCTAGTAGTCCCCTGAGTT+TGG + chr2_3:16199727-16199746 None:intergenic 50.0%
! GTTTGTGGTGGAGGAGTTTC+TGG - chr2_3:16200187-16200206 Msa0281030:intron 50.0%
! CCTTGTCATTTCAATCCGGG+CGG + chr2_3:16200780-16200799 None:intergenic 50.0%
AGAGAAGAGAAGAGGGCTGA+AGG - chr2_3:16200837-16200856 Msa0281030:intron 50.0%
GAGAAGAGAAGAGGGCTGAA+GGG - chr2_3:16200838-16200857 Msa0281030:intron 50.0%
TGAGTGAGAAATGGGAGGGA+GGG + chr2_3:16201014-16201033 None:intergenic 50.0%
TCCCTCCCATTTCTCACTCA+CGG - chr2_3:16201014-16201033 Msa0281030:intron 50.0%
ACGACCCGTGAGTGAGAAAT+GGG + chr2_3:16201022-16201041 None:intergenic 50.0%
AACGACCCGTGAGTGAGAAA+TGG + chr2_3:16201023-16201042 None:intergenic 50.0%
AGGCACAGAGAAGGATAGAC+TGG - chr2_3:16201582-16201601 Msa0281030:intron 50.0%
CCCGCAGATAAGTTGTGAAG+TGG - chr2_3:16201830-16201849 Msa0281030:intron 50.0%
CGGGGAAGGATGTGTGATTA+AGG - chr2_3:16202190-16202209 Msa0281030:intron 50.0%
AATGCAGCCCAACCACTGAA+TGG + chr2_3:16202347-16202366 None:intergenic 50.0%
GGGCTGCATTCTTGCATATC+AGG - chr2_3:16202357-16202376 Msa0281030:intron 50.0%
GCTAAAGGCAGTGTTCCACT+TGG - chr2_3:16202629-16202648 Msa0281030:CDS 50.0%
GGCAGTGTTCCACTTGGTAT+TGG - chr2_3:16202635-16202654 Msa0281030:CDS 50.0%
GGAACAGAGGGAGTAGATGA+TGG + chr2_3:16202819-16202838 None:intergenic 50.0%
TACACTACGATGCCGCAAGA+AGG + chr2_3:16202906-16202925 None:intergenic 50.0%
! CATTCCCAACGATGTCGACT+TGG - chr2_3:16203373-16203392 Msa0281030:intron 50.0%
AAACGGGAGAGGAAGAAGGG+TGG - chr2_3:16197250-16197269 Msa0281030:three_prime_UTR 55.0%
ACGAAGGGACCGAGAGAAAC+AGG - chr2_3:16197367-16197386 Msa0281030:three_prime_UTR 55.0%
GGGACCGAGAGAAACAGGAA+CGG - chr2_3:16197372-16197391 Msa0281030:three_prime_UTR 55.0%
GGACCGAGAGAAACAGGAAC+GGG - chr2_3:16197373-16197392 Msa0281030:three_prime_UTR 55.0%
GAGAGAAACAGGAACGGGAG+AGG - chr2_3:16197378-16197397 Msa0281030:three_prime_UTR 55.0%
ACAGGAACGGGAGAGGAAGA+AGG - chr2_3:16197385-16197404 Msa0281030:three_prime_UTR 55.0%
CAGGAACGGGAGAGGAAGAA+GGG - chr2_3:16197386-16197405 Msa0281030:three_prime_UTR 55.0%
AGAAGGGCGACGAGAGAGAA+CGG - chr2_3:16197402-16197421 Msa0281030:three_prime_UTR 55.0%
GAGAGAGAACGGAAGAGGAG+AGG - chr2_3:16197413-16197432 Msa0281030:three_prime_UTR 55.0%
!! GTCTCTTGGTGCCTTAGCGA+TGG - chr2_3:16198685-16198704 Msa0281030:intron 55.0%
CCGCCCGGATTGAAATGACA+AGG - chr2_3:16200777-16200796 Msa0281030:intron 55.0%
GAGGGCTGAAGGGATAGCAA+TGG - chr2_3:16200848-16200867 Msa0281030:intron 55.0%
TGAGAAATGGGAGGGAGGGA+GGG + chr2_3:16201010-16201029 None:intergenic 55.0%
GTGAGTGAGAAATGGGAGGG+AGG + chr2_3:16201015-16201034 None:intergenic 55.0%
CCCGTGAGTGAGAAATGGGA+GGG + chr2_3:16201018-16201037 None:intergenic 55.0%
CCCTCCCATTTCTCACTCAC+GGG - chr2_3:16201015-16201034 Msa0281030:intron 55.0%
ACCCGTGAGTGAGAAATGGG+AGG + chr2_3:16201019-16201038 None:intergenic 55.0%
! GTGTTGGTCAGGCACAGAGA+AGG - chr2_3:16201573-16201592 Msa0281030:intron 55.0%
GCGACGAGAGAGAACGGAAG+AGG - chr2_3:16197408-16197427 Msa0281030:three_prime_UTR 60.0%
!! GATCAGAGTGTTGGACGGCG+AGG + chr2_3:16197467-16197486 None:intergenic 60.0%
AAATGGGAGGGAGGGAGGGA+GGG + chr2_3:16201006-16201025 None:intergenic 60.0%
GTGAGAAATGGGAGGGAGGG+AGG + chr2_3:16201011-16201030 None:intergenic 60.0%
GTGTTGGACGGCGAGGTCGA+CGG + chr2_3:16197460-16197479 None:intergenic 65.0%
AATGGGAGGGAGGGAGGGAG+GGG + chr2_3:16201005-16201024 None:intergenic 65.0%
GAAATGGGAGGGAGGGAGGG+AGG + chr2_3:16201007-16201026 None:intergenic 65.0%
TTGGACGGCGAGGTCGACGG+CGG + chr2_3:16197457-16197476 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 16197241 16204002 16197241 ID=Msa0281030;Name=Msa0281030
chr2_3 mRNA 16197241 16204002 16197241 ID=Msa0281030-mRNA-1;Parent=Msa0281030;Name=Msa0281030-mRNA-1;_AED=0.32;_eAED=0.32;_QI=296|0.75|0.88|1|0.75|0.66|9|499|247
chr2_3 exon 16197241 16197738 16197241 ID=Msa0281030-mRNA-1:exon:6727;Parent=Msa0281030-mRNA-1
chr2_3 exon 16197838 16197967 16197838 ID=Msa0281030-mRNA-1:exon:6726;Parent=Msa0281030-mRNA-1
chr2_3 exon 16198522 16198641 16198522 ID=Msa0281030-mRNA-1:exon:6725;Parent=Msa0281030-mRNA-1
chr2_3 exon 16198815 16198913 16198815 ID=Msa0281030-mRNA-1:exon:6724;Parent=Msa0281030-mRNA-1
chr2_3 exon 16199032 16199115 16199032 ID=Msa0281030-mRNA-1:exon:6723;Parent=Msa0281030-mRNA-1
chr2_3 exon 16202537 16202674 16202537 ID=Msa0281030-mRNA-1:exon:6722;Parent=Msa0281030-mRNA-1
chr2_3 exon 16202810 16202897 16202810 ID=Msa0281030-mRNA-1:exon:6721;Parent=Msa0281030-mRNA-1
chr2_3 exon 16203527 16203631 16203527 ID=Msa0281030-mRNA-1:exon:6720;Parent=Msa0281030-mRNA-1
chr2_3 exon 16203726 16204002 16203726 ID=Msa0281030-mRNA-1:exon:6719;Parent=Msa0281030-mRNA-1
chr2_3 five_prime_UTR 16203726 16204002 16203726 ID=Msa0281030-mRNA-1:five_prime_utr;Parent=Msa0281030-mRNA-1
chr2_3 five_prime_UTR 16203613 16203631 16203613 ID=Msa0281030-mRNA-1:five_prime_utr;Parent=Msa0281030-mRNA-1
chr2_3 CDS 16203527 16203612 16203527 ID=Msa0281030-mRNA-1:cds;Parent=Msa0281030-mRNA-1
chr2_3 CDS 16202810 16202897 16202810 ID=Msa0281030-mRNA-1:cds;Parent=Msa0281030-mRNA-1
chr2_3 CDS 16202537 16202674 16202537 ID=Msa0281030-mRNA-1:cds;Parent=Msa0281030-mRNA-1
chr2_3 CDS 16199032 16199115 16199032 ID=Msa0281030-mRNA-1:cds;Parent=Msa0281030-mRNA-1
chr2_3 CDS 16198815 16198913 16198815 ID=Msa0281030-mRNA-1:cds;Parent=Msa0281030-mRNA-1
chr2_3 CDS 16198522 16198641 16198522 ID=Msa0281030-mRNA-1:cds;Parent=Msa0281030-mRNA-1
chr2_3 CDS 16197839 16197967 16197839 ID=Msa0281030-mRNA-1:cds;Parent=Msa0281030-mRNA-1
chr2_3 three_prime_UTR 16197838 16197838 16197838 ID=Msa0281030-mRNA-1:three_prime_utr;Parent=Msa0281030-mRNA-1
chr2_3 three_prime_UTR 16197241 16197738 16197241 ID=Msa0281030-mRNA-1:three_prime_utr;Parent=Msa0281030-mRNA-1
Gene Sequence

>Msa0281030

ATGTGTGTCTCCTTATTCAAAGAAAGCTTAATTGAAAGTATGGGGTTTGGGTTTGCAATTGGAGGAAGAAACAAGAAGAATTGGAGTGCATATGATAGAGCTGCAATTAAGTTCAGAGGAGTAGAGGCAGATATAAATTTCAACATTGAAGATTATGAAGAGGATTTGAAGCCGGTAGTTCGTCTATGTTTCTTAATCTCAGGTATCAACTCTTTCAAGTTTTTCATGGCATACAAAGGATTTTTTATGGTCAACGATGAGCTTCTTCTGCAAGTATTTAAGAAGCGCAAGTCTCTTGGTGCCTTAGCGATGACTCAACTGCGATATTTGCCTCTGTCAAAGATGCTTGATGCTGATATCACTGATAGTGTTATCGGGGAAGGATGTGTGATTAAGAACTGCAAAATCTTCCATTCAGTGGTTGGGCTGCATTCTTGCATATCAGGAGGTGCGATTATTGAAGACACTTTGTTGATGGGCGCATATTATTACGAGACAGAAGCTGATAAAAGTTTTTTGGCTGCTAAAGGCAGTGTTCCACTTGGTATTGGCAGAAACTCCCGTATCAAAAGAGCAATTGTTGACAAGAATGCTAGAATTGGAGAAAATGTGAAGGCAGATTTTGATGGAAATGGCACCTTCAAATGTGAAGAGTTCATCACAATGAGTGTTCACATGAGAAGGCTTGGAAATGATGAGCATCTCACAAAAGCATTCCCAACGATGTCGACTTGGATAAGGTAA
Protein sequence

>Msa0281030

MCVSLFKESLIESMGFGFAIGGRNKKNWSAYDRAAIKFRGVEADINFNIEDYEEDLKPVVRLCFLISGINSFKFFMAYKGFFMVNDELLLQVFKKRKSLGALAMTQLRYLPLSKMLDADITDSVIGEGCVIKNCKIFHSVVGLHSCISGGAIIEDTLLMGAYYYETEADKSFLAAKGSVPLGIGRNSRIKRAIVDKNARIGENVKADFDGNGTFKCEEFITMSVHMRRLGNDEHLTKAFPTMSTWIR*