AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0388850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388850 MtrunA17_Chr5g0447341 91.262 103 9 0 128 230 375 477 2.16e-57 191
Msa0388850 MtrunA17_Chr3g0120471 80.583 103 17 1 128 230 374 473 7.19e-49 169
Msa0388850 MtrunA17_Chr7g0271011 45.192 104 57 0 126 229 394 497 6.85e-27 109
Msa0388850 MtrunA17_Chr3g0144731 45.000 100 55 0 130 229 23 122 2.63e-26 100
Msa0388850 MtrunA17_Chr4g0074531 49.038 104 53 0 126 229 379 482 5.51e-25 103
Msa0388850 MtrunA17_Chr3g0141761 43.434 99 56 0 130 228 392 490 6.11e-25 103
Msa0388850 MtrunA17_Chr4g0077071 88.000 50 6 0 130 179 32 81 9.16e-24 92.0
Msa0388850 MtrunA17_Chr4g0035171 43.000 100 57 0 130 229 390 489 1.25e-22 97.1
Msa0388850 MtrunA17_Chr6g0454161 80.392 51 10 0 176 226 125 175 4.81e-20 88.2
Msa0388850 MtrunA17_Chr4g0033371 91.176 34 3 0 231 264 421 454 4.90e-14 71.6
Msa0388850 MtrunA17_Chr5g0441571 46.392 97 39 3 16 106 141 230 2.29e-13 69.7
Msa0388850 MtrunA17_Chr5g0441651 79.487 39 8 0 68 106 200 238 1.74e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388850 AT5G48300.1 82.178 101 18 0 130 230 382 482 4.42e-51 175
Msa0388850 AT1G27680.1 44.860 107 58 1 130 235 380 486 5.82e-26 106
Msa0388850 AT5G19220.1 46.154 104 56 0 126 229 380 483 2.76e-25 104
Msa0388850 AT2G21590.2 42.000 100 58 0 130 229 385 484 6.75e-23 98.2
Msa0388850 AT2G21590.3 42.000 100 58 0 130 229 385 484 6.75e-23 98.2
Msa0388850 AT2G21590.5 42.000 100 58 0 130 229 385 484 6.75e-23 98.2
Msa0388850 AT2G21590.4 42.000 100 58 0 130 229 385 484 6.75e-23 98.2
Msa0388850 AT2G21590.7 42.000 100 58 0 130 229 385 484 6.75e-23 98.2
Msa0388850 AT2G21590.1 42.000 100 58 0 130 229 385 484 6.75e-23 98.2
Msa0388850 AT2G21590.6 42.000 100 58 0 130 229 385 484 6.75e-23 98.2
Msa0388850 AT4G39210.2 44.000 100 56 0 130 229 383 482 5.08e-22 95.5
Msa0388850 AT4G39210.1 44.000 100 56 0 130 229 383 482 5.08e-22 95.5
Msa0388850 AT1G05610.1 48.077 104 52 1 128 229 334 437 2.18e-20 90.5
Msa0388850 AT1G05610.2 48.077 104 52 1 128 229 340 443 2.31e-20 90.5

Find 95 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAATTTGTCTTCAAATT+TGG 0.102206 3_1:-93324204 Msa0388850:three_prime_UTR
TTTAGAAGCAAAGGAAATTA+AGG 0.221632 3_1:-93330725 Msa0388850:intron
AATTAAGCTTTCTTTGAATA+AGG 0.238635 3_1:+93330580 None:intergenic
AGAAAGCTTAATTGAAAGTA+TGG 0.246651 3_1:-93330570 Msa0388850:CDS
GTACAGTTTGAGAGTGTAAA+TGG 0.292311 3_1:-93324366 Msa0388850:three_prime_UTR
GGGCTGCATTCTTGCATATC+AGG 0.296848 3_1:-93325803 Msa0388850:CDS
CGGGGAAGGATGTGTGATTA+AGG 0.317043 3_1:-93325970 Msa0388850:intron
CTCATGCTTTCTTCATCCCT+TGG 0.325599 3_1:+93327129 None:intergenic
ATTTCCTTTGCTTCTAAAAT+CGG 0.330480 3_1:+93330730 None:intergenic
GAGGAAGAAACAAGAAGAAT+TGG 0.332205 3_1:-93330529 Msa0388850:CDS
TAATTGAAAGTATGGGGTTT+GGG 0.345729 3_1:-93330562 Msa0388850:CDS
ATGGGGTTTGGGTTTGCAAT+TGG 0.350878 3_1:-93330551 Msa0388850:CDS
TTAATTGAAAGTATGGGGTT+TGG 0.364955 3_1:-93330563 Msa0388850:CDS
GCATGAGTGATGAAGCAATA+TGG 0.371280 3_1:-93327113 Msa0388850:CDS
GATGAACTCTTCACATTTGA+AGG 0.374057 3_1:+93324862 None:intergenic
GACAAGAGGAGATTGGAAAA+TGG 0.375067 3_1:-93324614 Msa0388850:three_prime_UTR
AGAAGAGAGAAGAGAGAAAA+GGG 0.376057 3_1:-93330897 Msa0388850:five_prime_UTR
GATATCACTGATAGTGTTAT+CGG 0.379793 3_1:-93325990 Msa0388850:CDS
ACGAAGGGACCGAGAGAAAC+AGG 0.383319 3_1:-93330854 Msa0388850:five_prime_UTR
CGTCAATGTTTCTTAATCTC+AGG 0.396459 3_1:-93329646 Msa0388850:CDS
GGCAGTGTTCCACTTGGTAT+TGG 0.399314 3_1:-93325525 Msa0388850:CDS
TATTGAAGACACTTTGTTGA+TGG 0.401901 3_1:-93325771 Msa0388850:CDS
GTTGACAAGAATGCTAGAAT+TGG 0.404186 3_1:-93325474 Msa0388850:CDS
GAGAAGAGAGAAGAGAGAAA+AGG 0.435926 3_1:-93330898 Msa0388850:five_prime_UTR
AAATCTTCCATTCAGTGGTT+GGG 0.441064 3_1:-93325823 Msa0388850:CDS
AAATTGCATGTCGTTAGAAA+AGG 0.441642 3_1:-93330923 Msa0388850:five_prime_UTR
TCTCCCGTTCCTGTTTCTCT+CGG 0.447250 3_1:+93330845 None:intergenic
GAAAGCTTAATTGAAAGTAT+GGG 0.452862 3_1:-93330569 Msa0388850:CDS
GGGTTTGGGTTTGCAATTGG+AGG 0.457079 3_1:-93330548 Msa0388850:CDS
TTATCCAAGTCGACATCGTT+GGG 0.457199 3_1:+93324783 None:intergenic
TGATGAAGACAAGAGGAGAT+TGG 0.460581 3_1:-93324621 Msa0388850:three_prime_UTR
CTGAATTTCAAATTGCATGT+GGG 0.467504 3_1:-93324495 Msa0388850:three_prime_UTR
CAACGATGTCGACTTGGATA+AGG 0.467770 3_1:-93324781 Msa0388850:CDS
ATATCACTGATAGTGTTATC+GGG 0.469841 3_1:-93325989 Msa0388850:CDS
ACAGGAACGGGAGAGGAAGA+AGG 0.470342 3_1:-93330836 Msa0388850:five_prime_UTR
AAAATCTTCCATTCAGTGGT+TGG 0.473513 3_1:-93325824 Msa0388850:CDS
AGAGAAACGGGAGAGGAAGA+AGG 0.475515 3_1:-93330975 Msa0388850:five_prime_UTR
TTTAAGAAGCGCAAGTCTCT+TGG 0.484148 3_1:-93329550 Msa0388850:CDS
AGAGAGAACGGAAGAGGAGA+GGG 0.484152 3_1:-93330807 Msa0388850:five_prime_UTR
GAAGAAACAAGAAGAATTGG+AGG 0.484939 3_1:-93330526 Msa0388850:intron
TTGGTGCCTTAGCGATGGTA+AGG 0.495404 3_1:-93329531 Msa0388850:intron
AGTGTTCACATGAGAAGGCT+TGG 0.497606 3_1:-93324833 Msa0388850:CDS
GGGGACGAGAGAAACGGGAG+AGG 0.500968 3_1:-93330982 Msa0388850:five_prime_UTR
GGACCGAGAGAAACAGGAAC+GGG 0.505385 3_1:-93330848 Msa0388850:five_prime_UTR
CATTCCCAACGATGTCGACT+TGG 0.506190 3_1:-93324787 Msa0388850:CDS
GCGACGAGAGAGAACGGAAG+AGG 0.507684 3_1:-93330813 Msa0388850:five_prime_UTR
GCATGCTGCTGAATAATTAG+TGG 0.510173 3_1:+93324419 None:intergenic
GAGAGAAACAGGAACGGGAG+AGG 0.518708 3_1:-93330843 Msa0388850:five_prime_UTR
ATTGAAGACACTTTGTTGAT+GGG 0.519372 3_1:-93325770 Msa0388850:CDS
AATGCAGCCCAACCACTGAA+TGG 0.520984 3_1:+93325816 None:intergenic
AGAAGGGCGACGAGAGAGAA+CGG 0.522224 3_1:-93330819 Msa0388850:five_prime_UTR
CAGGAACGGGAGAGGAAGAA+GGG 0.522491 3_1:-93330835 Msa0388850:five_prime_UTR
AAGGGAACGAGAGAAAGAAG+AGG 0.523683 3_1:-93330879 Msa0388850:five_prime_UTR
CTTATCCAAGTCGACATCGT+TGG 0.524700 3_1:+93324782 None:intergenic
AATTGCATGTCGTTAGAAAA+GGG 0.524800 3_1:-93330922 Msa0388850:five_prime_UTR
AATGTTTAAAGACAAATCTA+CGG 0.528586 3_1:-93324545 Msa0388850:three_prime_UTR
GAGAAACGGGAGAGGAAGAA+GGG 0.529600 3_1:-93330974 Msa0388850:five_prime_UTR
GAGAGAGAACGGAAGAGGAG+AGG 0.532551 3_1:-93330808 Msa0388850:five_prime_UTR
CAATGAGTGTTCACATGAGA+AGG 0.534579 3_1:-93324838 Msa0388850:CDS
ACTGAATTTCAAATTGCATG+TGG 0.539019 3_1:-93324496 Msa0388850:three_prime_UTR
ATCGGTGCAGATCAGAGTGT+TGG 0.543077 3_1:+93330748 None:intergenic
AAAGCTTAATTGAAAGTATG+GGG 0.546070 3_1:-93330568 Msa0388850:CDS
CAACATTGAAGATTATGAAG+AGG 0.549840 3_1:-93329821 Msa0388850:CDS
TATGATATGTACTCAGAACT+TGG 0.552496 3_1:+93324464 None:intergenic
GTGTTGGACGGCGAGGTCGA+CGG 0.559179 3_1:+93330764 None:intergenic
CTGCAAAATCTTCCATTCAG+TGG 0.561130 3_1:-93325828 Msa0388850:CDS
GTCTCTTGGTGCCTTAGCGA+TGG 0.562521 3_1:-93329536 Msa0388850:CDS
TGAATTTCAAATTGCATGTG+GGG 0.562677 3_1:-93324494 Msa0388850:three_prime_UTR
AGAGAAAGAAGAGGGAACGA+AGG 0.563011 3_1:-93330870 Msa0388850:five_prime_UTR
TGTGTAAAGCTCTAATGCCA+AGG 0.563050 3_1:-93327146 Msa0388850:CDS
ATGTCGACTTGGATAAGGTA+AGG 0.566871 3_1:-93324776 Msa0388850:intron
CCTCACACTTTCTTCAGATG+AGG 0.567909 3_1:+93324334 None:intergenic
TTATGAAGAGGATTTGAAGC+CGG 0.569826 3_1:-93329809 Msa0388850:intron
CTGCATTCTTGCATATCAGG+AGG 0.573281 3_1:-93325800 Msa0388850:CDS
GAGAAAGAAGAGGGAACGAA+GGG 0.574865 3_1:-93330869 Msa0388850:five_prime_UTR
ACTGATAGTGTTATCGGGGA+AGG 0.575346 3_1:-93325984 Msa0388850:CDS
ATGTTTAAAGACAAATCTAC+GGG 0.579761 3_1:-93324544 Msa0388850:three_prime_UTR
AATTAAGTTCAGAGGAGTAG+AGG 0.591705 3_1:-93329857 Msa0388850:CDS
AAACGGGAGAGGAAGAAGGG+TGG 0.593784 3_1:-93330971 Msa0388850:five_prime_UTR
AGAGCTGCAATTAAGTTCAG+AGG 0.598621 3_1:-93329865 Msa0388850:CDS
GCATCAAGCATCTTCGACAG+AGG 0.603100 3_1:+93326014 None:intergenic
AGGGAACGAGAGAAAGAAGA+GGG 0.605408 3_1:-93330878 Msa0388850:five_prime_UTR
GCTAAAGGCAGTGTTCCACT+TGG 0.607159 3_1:-93325531 Msa0388850:CDS
GTGTAAAGCTCTAATGCCAA+GGG 0.623691 3_1:-93327145 Msa0388850:CDS
GGGACCGAGAGAAACAGGAA+CGG 0.630598 3_1:-93330849 Msa0388850:five_prime_UTR
GATCAGAGTGTTGGACGGCG+AGG 0.636768 3_1:+93330757 None:intergenic
AAGGCAATGATGAAGACAAG+AGG 0.640920 3_1:-93324628 Msa0388850:three_prime_UTR
TAGAATTGGAGAAAATGTGA+AGG 0.647495 3_1:-93325460 Msa0388850:intron
GAATTTCAAATTGCATGTGG+GGG 0.666111 3_1:-93324493 Msa0388850:three_prime_UTR
TTGGACGGCGAGGTCGACGG+CGG 0.673722 3_1:+93330767 None:intergenic
TATCACTGATAGTGTTATCG+GGG 0.674328 3_1:-93325988 Msa0388850:CDS
GTGCAGATCAGAGTGTTGGA+CGG 0.676123 3_1:+93330752 None:intergenic
GAGTTTCTGCCAATACCAAG+TGG 0.682922 3_1:+93325516 None:intergenic
GATGGGCGCATATTATTACG+AGG 0.683765 3_1:-93325753 Msa0388850:intron
CCTCATCTGAAGAAAGTGTG+AGG 0.684673 3_1:-93324334 Msa0388850:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATATTTATGATGT+TGG - chr3_1:93325984-93326003 Msa0388850:CDS 10.0%
!!! TGGAATTTTAAAAAAATATT+TGG - chr3_1:93327194-93327213 Msa0388850:intron 10.0%
!!! TTTCTTCTATATTATTTTAA+TGG - chr3_1:93328126-93328145 Msa0388850:intron 10.0%
!!! AATAAGTTTTATATTTGTTT+TGG + chr3_1:93330154-93330173 None:intergenic 10.0%
!! AAATTGAATGTATAAATTGT+AGG - chr3_1:93325023-93325042 Msa0388850:intron 15.0%
!! AATTGAATGTATAAATTGTA+GGG - chr3_1:93325024-93325043 Msa0388850:intron 15.0%
!! AAAAATATTCTCAACATTAA+AGG + chr3_1:93325116-93325135 None:intergenic 15.0%
!!! TAATGTTGAGAATATTTTTT+CGG - chr3_1:93325117-93325136 Msa0388850:intron 15.0%
!!! AAATTTCATTCATTCTTTTA+TGG - chr3_1:93325204-93325223 Msa0388850:intron 15.0%
!! AATAATTGATTGAAAACTAT+AGG + chr3_1:93325428-93325447 None:intergenic 15.0%
!! TAAAAAATTTACACTTTAGT+AGG + chr3_1:93326127-93326146 None:intergenic 15.0%
!!! GTATTGATTTATTTATTTCT+GGG - chr3_1:93326529-93326548 Msa0388850:intron 15.0%
!! AAAAAAATATTTGGTTGATT+TGG - chr3_1:93327203-93327222 Msa0388850:intron 15.0%
!! TTAATTCAATTATGTTATGA+TGG - chr3_1:93327618-93327637 Msa0388850:intron 15.0%
!! TATAATGAAAAAAATGAACT+TGG - chr3_1:93330233-93330252 Msa0388850:intron 15.0%
!!! ATCTAATATTGTTTTGTTAA+AGG - chr3_1:93330483-93330502 Msa0388850:intron 15.0%
!!! AATTAATTTGTCTTCAAATT+TGG - chr3_1:93330956-93330975 Msa0388850:five_prime_UTR 15.0%
!! TTCATTGAGAAATTGAAATT+GGG + chr3_1:93324530-93324549 None:intergenic 20.0%
!! AATTTCAATTTCTCAATGAA+GGG - chr3_1:93324530-93324549 Msa0388850:three_prime_UTR 20.0%
!! AATTAAGCTTTCTTTGAATA+AGG + chr3_1:93324583-93324602 None:intergenic 20.0%
!!! TGTAATTGTTTTATGATGAA+TGG - chr3_1:93325062-93325081 Msa0388850:intron 20.0%
!!! AATGTTGAGAATATTTTTTC+GGG - chr3_1:93325118-93325137 Msa0388850:intron 20.0%
!! CAATTCAAGATACAAAAAAA+AGG + chr3_1:93325452-93325471 None:intergenic 20.0%
!!! AATTTTAACTTCAATGTGAA+TGG - chr3_1:93325833-93325852 Msa0388850:CDS 20.0%
!! ATCAATTGAAGTCAATAATT+TGG + chr3_1:93326166-93326185 None:intergenic 20.0%
!!! ATCTAAATTCTAAAGCATTA+TGG + chr3_1:93326324-93326343 None:intergenic 20.0%
!!! GTTATTGAAATTTTTGCAAA+TGG - chr3_1:93326507-93326526 Msa0388850:intron 20.0%
!!! GGTATTGATTTATTTATTTC+TGG - chr3_1:93326528-93326547 Msa0388850:intron 20.0%
!! TAAAATCTAATTGATACTGA+TGG - chr3_1:93326714-93326733 Msa0388850:intron 20.0%
!!! TTAACAGACTTTAATTTTTG+TGG - chr3_1:93326804-93326823 Msa0388850:intron 20.0%
!! CGAATTTGGAAAAAAAAATT+TGG - chr3_1:93326894-93326913 Msa0388850:intron 20.0%
!!! AGCTTTCTATTGATAATTTT+TGG - chr3_1:93327114-93327133 Msa0388850:CDS 20.0%
!!! TATTGATAATTTTTGGTTTG+TGG - chr3_1:93327121-93327140 Msa0388850:CDS 20.0%
!!! TTAGTTATTCTTTTGAGTTT+TGG - chr3_1:93327174-93327193 Msa0388850:intron 20.0%
!!! AAATTTTGTCTATTTTCCAA+TGG + chr3_1:93327395-93327414 None:intergenic 20.0%
!! AATGTTCATGTTGAAATATT+TGG - chr3_1:93327699-93327718 Msa0388850:intron 20.0%
!! TTCTATTCACATGTAAATAA+AGG + chr3_1:93328523-93328542 None:intergenic 20.0%
!! TTGTTCTTTATGTTATGTAA+TGG + chr3_1:93328550-93328569 None:intergenic 20.0%
!! TAAGAATTGATCAAAATAGA+AGG - chr3_1:93328903-93328922 Msa0388850:intron 20.0%
!!! ATGGATTAGAAAGTAAAATA+GGG + chr3_1:93329759-93329778 None:intergenic 20.0%
!!! ATATTTGTTTTGGATAATGA+TGG + chr3_1:93330144-93330163 None:intergenic 20.0%
!!! AATATTGTTTTGTTAAAGGA+TGG - chr3_1:93330487-93330506 Msa0388850:intron 20.0%
!! AATGTTTAAAGACAAATCTA+CGG - chr3_1:93330615-93330634 Msa0388850:intron 20.0%
!!! ATTTCCTTTGCTTCTAAAAT+CGG + chr3_1:93324433-93324452 None:intergenic 25.0%
! TTTAGAAGCAAAGGAAATTA+AGG - chr3_1:93324435-93324454 Msa0388850:three_prime_UTR 25.0%
! TCATTGAGAAATTGAAATTG+GGG + chr3_1:93324529-93324548 None:intergenic 25.0%
! CTTCATTGAGAAATTGAAAT+TGG + chr3_1:93324531-93324550 None:intergenic 25.0%
! CAATTTCAATTTCTCAATGA+AGG - chr3_1:93324529-93324548 Msa0388850:three_prime_UTR 25.0%
! AGAAAGCTTAATTGAAAGTA+TGG - chr3_1:93324590-93324609 Msa0388850:three_prime_UTR 25.0%
!! GAAAGCTTAATTGAAAGTAT+GGG - chr3_1:93324591-93324610 Msa0388850:three_prime_UTR 25.0%
!! AAAGCTTAATTGAAAGTATG+GGG - chr3_1:93324592-93324611 Msa0388850:three_prime_UTR 25.0%
! TGTAAATCATTTCTGTTTGA+TGG - chr3_1:93324675-93324694 Msa0388850:intron 25.0%
! TCTGTTTAAGAAGATACATA+GGG - chr3_1:93324724-93324743 Msa0388850:intron 25.0%
! AAATCAGATACAAAGGAAAA+TGG + chr3_1:93324811-93324830 None:intergenic 25.0%
!! ATTTTCCTTTGTATCTGATT+TGG - chr3_1:93324810-93324829 Msa0388850:CDS 25.0%
!! TTTTACCAAATCAGATACAA+AGG + chr3_1:93324818-93324837 None:intergenic 25.0%
!! AAAAAGCTATTTCACAATAC+TGG + chr3_1:93324846-93324865 None:intergenic 25.0%
! TATGATAATTTCATCCCATA+AGG - chr3_1:93324976-93324995 Msa0388850:intron 25.0%
! TTACATAGAACATACCTTAT+GGG + chr3_1:93324993-93325012 None:intergenic 25.0%
! TTTACATAGAACATACCTTA+TGG + chr3_1:93324994-93325013 None:intergenic 25.0%
!! TCTGAAAATCAATTTGTTTC+AGG - chr3_1:93325085-93325104 Msa0388850:intron 25.0%
!!! ATGTTGAGAATATTTTTTCG+GGG - chr3_1:93325119-93325138 Msa0388850:intron 25.0%
! TGTTGTGATTTAAATGAGTT+TGG - chr3_1:93325470-93325489 Msa0388850:CDS 25.0%
!! TTATTCCAGTTTTTGTTACA+TGG - chr3_1:93326063-93326082 Msa0388850:intron 25.0%
! TATATCCATGTAACAAAAAC+TGG + chr3_1:93326071-93326090 None:intergenic 25.0%
!!! TTATCTAGTTGATTTTTCTG+TGG + chr3_1:93326380-93326399 None:intergenic 25.0%
! AACTAGATAAATCTTTGATG+TGG - chr3_1:93326390-93326409 Msa0388850:intron 25.0%
! TAAATCTTTGATGTGGTATT+TGG - chr3_1:93326397-93326416 Msa0388850:intron 25.0%
!!! GATTTATTTATTTCTGGGAA+TGG - chr3_1:93326534-93326553 Msa0388850:intron 25.0%
!!! CTTTAATTTTTGTGGTTTTG+TGG - chr3_1:93326812-93326831 Msa0388850:intron 25.0%
!! TTTTTCCAAATTCGAAAACT+CGG + chr3_1:93326888-93326907 None:intergenic 25.0%
! CTAAAAACATACACAATCTA+AGG + chr3_1:93327065-93327084 None:intergenic 25.0%
! GACAAAATTTAACACGAAAT+AGG - chr3_1:93327405-93327424 Msa0388850:intron 25.0%
! AATTTCTGTCTTCTTTCTAA+TGG + chr3_1:93327573-93327592 None:intergenic 25.0%
!! GACAGAAATTAACTTGAAAT+AGG - chr3_1:93327583-93327602 Msa0388850:intron 25.0%
!! AATTAACTTGAAATAGGCTT+TGG - chr3_1:93327589-93327608 Msa0388850:intron 25.0%
!! ATTCAAAATTTTGTGATGCT+TGG - chr3_1:93328186-93328205 Msa0388850:intron 25.0%
!! ACATAAAGAACAAAAAGTGT+TGG - chr3_1:93328557-93328576 Msa0388850:intron 25.0%
!! GTCAATTTTTGAATCCTTTT+TGG - chr3_1:93328734-93328753 Msa0388850:intron 25.0%
! GTTGGTTAAATATACCAAAA+AGG + chr3_1:93328751-93328770 None:intergenic 25.0%
!!! AGTCATGATTGTGTTATTTT+TGG - chr3_1:93329041-93329060 Msa0388850:intron 25.0%
!! TCATTAGTGTGTATCATTTT+TGG - chr3_1:93329064-93329083 Msa0388850:intron 25.0%
!!! CATTAGTGTGTATCATTTTT+GGG - chr3_1:93329065-93329084 Msa0388850:intron 25.0%
!!! AGAAGCTGATAAAAGTTTTT+TGG - chr3_1:93329604-93329623 Msa0388850:CDS 25.0%
!!! GATGGATTAGAAAGTAAAAT+AGG + chr3_1:93329760-93329779 None:intergenic 25.0%
! TATTAAGCTTGACAAATTGT+TGG - chr3_1:93329786-93329805 Msa0388850:intron 25.0%
! ACTTAAAAAGACCAAAGATT+AGG + chr3_1:93329840-93329859 None:intergenic 25.0%
! ACACCTTCAATAAAAAATGT+CGG + chr3_1:93329965-93329984 None:intergenic 25.0%
! TTGTTAAAGCTATCTAAATC+TGG + chr3_1:93330178-93330197 None:intergenic 25.0%
!!! AGTAAGTTTTGAGGAATTTA+AGG - chr3_1:93330513-93330532 Msa0388850:intron 25.0%
! ATGTTTAAAGACAAATCTAC+GGG - chr3_1:93330616-93330635 Msa0388850:intron 25.0%
AAATTGCATGTCGTTAGAAA+AGG - chr3_1:93324237-93324256 Msa0388850:three_prime_UTR 30.0%
AATTGCATGTCGTTAGAAAA+GGG - chr3_1:93324238-93324257 Msa0388850:three_prime_UTR 30.0%
! TTAATTGAAAGTATGGGGTT+TGG - chr3_1:93324597-93324616 Msa0388850:three_prime_UTR 30.0%
! TAATTGAAAGTATGGGGTTT+GGG - chr3_1:93324598-93324617 Msa0388850:three_prime_UTR 30.0%
GTCTGTTTAAGAAGATACAT+AGG - chr3_1:93324723-93324742 Msa0388850:intron 30.0%
ATGGTTGAATTTGATCTGAA+TGG - chr3_1:93324749-93324768 Msa0388850:intron 30.0%
!!! TGTTGAGAATATTTTTTCGG+GGG - chr3_1:93325120-93325139 Msa0388850:intron 30.0%
CAACATTGAAGATTATGAAG+AGG - chr3_1:93325339-93325358 Msa0388850:intron 30.0%
TGTGATTTAAATGAGTTTGG+AGG - chr3_1:93325473-93325492 Msa0388850:CDS 30.0%
AGTTTGGAGGAATTTATTTC+AGG - chr3_1:93325486-93325505 Msa0388850:CDS 30.0%
!!! CAACTCTTTCAAGTTTTTCA+TGG - chr3_1:93325540-93325559 Msa0388850:CDS 30.0%
! AAGTTTTTCATGGCATACAA+AGG - chr3_1:93325550-93325569 Msa0388850:CDS 30.0%
!!! GGCATACAAAGGATTTTTTA+TGG - chr3_1:93325561-93325580 Msa0388850:CDS 30.0%
!! TAGTTCTGATTATTGTGATC+TGG - chr3_1:93325713-93325732 Msa0388850:intron 30.0%
!!! CATCTTTTTTCTCTTCTGTT+TGG - chr3_1:93326255-93326274 Msa0388850:intron 30.0%
GGTCTATGATGGTTAAAATT+TGG - chr3_1:93326480-93326499 Msa0388850:intron 30.0%
AACCATCATACACATAAGAA+AGG + chr3_1:93326576-93326595 None:intergenic 30.0%
TGTGTATGATGGTTCAAATT+TGG - chr3_1:93326582-93326601 Msa0388850:intron 30.0%
! GTGACATTGTAACTTTTGTA+AGG + chr3_1:93326751-93326770 None:intergenic 30.0%
!!! TGGTTTTGTGGTTAATGTTA+AGG - chr3_1:93326824-93326843 Msa0388850:intron 30.0%
!!! TGTTTTTAGTGAGTTGTGTA+TGG - chr3_1:93327076-93327095 Msa0388850:intron 30.0%
TCAATAGAAAGCTTGAACAA+AGG + chr3_1:93327107-93327126 None:intergenic 30.0%
!!! TGATAATTTTTGGTTTGTGG+TGG - chr3_1:93327124-93327143 Msa0388850:CDS 30.0%
! TGGTTGTGTGATTTTGTTAA+AGG - chr3_1:93327223-93327242 Msa0388850:intron 30.0%
TACAAACCAATTGATAGAGA+AGG - chr3_1:93327254-93327273 Msa0388850:intron 30.0%
ACAAATCCTTCTCTATCAAT+TGG + chr3_1:93327263-93327282 None:intergenic 30.0%
! TTGATAGAGAAGGATTTGTT+TGG - chr3_1:93327264-93327283 Msa0388850:intron 30.0%
!! GGTGGAATTTTAAGAAATGT+TGG - chr3_1:93327291-93327310 Msa0388850:intron 30.0%
TAGACCTACTGTTAGAAAAA+TGG - chr3_1:93327326-93327345 Msa0388850:intron 30.0%
!! ATGACCATTTTTCTAACAGT+AGG + chr3_1:93327333-93327352 None:intergenic 30.0%
TTGAGTGAAAATTGAACCAT+TGG - chr3_1:93327376-93327395 Msa0388850:intron 30.0%
GTAAAAATCTGAACTGTTGT+TGG - chr3_1:93327495-93327514 Msa0388850:intron 30.0%
TTCATACATCAGTTTGCAAT+AGG - chr3_1:93327540-93327559 Msa0388850:intron 30.0%
AAAATCTGCTCTAATGTAGT+TGG - chr3_1:93327676-93327695 Msa0388850:intron 30.0%
! TCATAAACACATTTTACCCA+AGG + chr3_1:93327904-93327923 None:intergenic 30.0%
!!! GGCTTGCAATTTTTTCTTAT+TGG - chr3_1:93328232-93328251 Msa0388850:intron 30.0%
!!! TATGTTTGTTGTAGCACTTT+TGG - chr3_1:93328308-93328327 Msa0388850:intron 30.0%
!!! ATGTTTGTTGTAGCACTTTT+GGG - chr3_1:93328309-93328328 Msa0388850:intron 30.0%
!! CACATGTAAATAAAGGTGTT+TGG + chr3_1:93328516-93328535 None:intergenic 30.0%
!! GAAAGTGTTTCTTCAATTCA+TGG - chr3_1:93328621-93328640 Msa0388850:intron 30.0%
TGGTACTAATGTGCATTTAA+AGG + chr3_1:93328676-93328695 None:intergenic 30.0%
TAAGTCTACTTCAATTGAGA+GGG + chr3_1:93328704-93328723 None:intergenic 30.0%
ATAAGTCTACTTCAATTGAG+AGG + chr3_1:93328705-93328724 None:intergenic 30.0%
! GATATCACTGATAGTGTTAT+CGG - chr3_1:93329170-93329189 Msa0388850:intron 30.0%
! ATATCACTGATAGTGTTATC+GGG - chr3_1:93329171-93329190 Msa0388850:intron 30.0%
TATTGAAGACACTTTGTTGA+TGG - chr3_1:93329389-93329408 Msa0388850:intron 30.0%
ATTGAAGACACTTTGTTGAT+GGG - chr3_1:93329390-93329409 Msa0388850:intron 30.0%
AGAAAATCAATGTTGCAGTT+AGG + chr3_1:93329573-93329592 None:intergenic 30.0%
!!! AAAAGTTTTTTGGCTGCTAA+AGG - chr3_1:93329614-93329633 Msa0388850:CDS 30.0%
! AACAATTGCTCTTTTGATAC+GGG + chr3_1:93329669-93329688 None:intergenic 30.0%
! CAACAATTGCTCTTTTGATA+CGG + chr3_1:93329670-93329689 None:intergenic 30.0%
TAGAATTGGAGAAAATGTGA+AGG - chr3_1:93329700-93329719 Msa0388850:intron 30.0%
! GGAATGAAAGTGTATATAGT+TGG + chr3_1:93329738-93329757 None:intergenic 30.0%
TCAAGCTTAATATGAGAAGA+TGG + chr3_1:93329778-93329797 None:intergenic 30.0%
!!! TTTTTTATTGAAGGTGTGTC+TGG - chr3_1:93329968-93329987 Msa0388850:intron 30.0%
TCGCAGTTTATTATTAGTGT+TGG - chr3_1:93330035-93330054 Msa0388850:intron 30.0%
GAAGGAAATCAGGTTATATT+CGG + chr3_1:93330099-93330118 None:intergenic 30.0%
TATAACCTGATTTCCTTCAT+AGG - chr3_1:93330101-93330120 Msa0388850:intron 30.0%
! GGTTATTAATTGATGACAAC+AGG - chr3_1:93330254-93330273 Msa0388850:intron 30.0%
ACTGAATTTCAAATTGCATG+TGG - chr3_1:93330664-93330683 Msa0388850:intron 30.0%
CTGAATTTCAAATTGCATGT+GGG - chr3_1:93330665-93330684 Msa0388850:intron 30.0%
TGAATTTCAAATTGCATGTG+GGG - chr3_1:93330666-93330685 Msa0388850:intron 30.0%
TATGATATGTACTCAGAACT+TGG + chr3_1:93330699-93330718 None:intergenic 30.0%
! GAGAGTGTAAATGGAAAAAT+AGG - chr3_1:93330803-93330822 Msa0388850:five_prime_UTR 30.0%
AGAAGAGAGAAGAGAGAAAA+GGG - chr3_1:93324263-93324282 Msa0388850:three_prime_UTR 35.0%
ATTGAAATTGGGGCTGAAAA+GGG + chr3_1:93324519-93324538 None:intergenic 35.0%
AATTGAAATTGGGGCTGAAA+AGG + chr3_1:93324520-93324539 None:intergenic 35.0%
GAGGAAGAAACAAGAAGAAT+TGG - chr3_1:93324631-93324650 Msa0388850:three_prime_UTR 35.0%
GAAGAAACAAGAAGAATTGG+AGG - chr3_1:93324634-93324653 Msa0388850:three_prime_UTR 35.0%
TAAGAAGATACATAGGGACA+TGG - chr3_1:93324730-93324749 Msa0388850:intron 35.0%
AATTAAGTTCAGAGGAGTAG+AGG - chr3_1:93325303-93325322 Msa0388850:intron 35.0%
! TTATGAAGAGGATTTGAAGC+CGG - chr3_1:93325351-93325370 Msa0388850:intron 35.0%
CGTCAATGTTTCTTAATCTC+AGG - chr3_1:93325514-93325533 Msa0388850:CDS 35.0%
AAAAAACCTTACCATCGCTA+AGG + chr3_1:93325638-93325657 None:intergenic 35.0%
! CAAGTTTCAGTATTTTCGCA+TGG - chr3_1:93325916-93325935 Msa0388850:intron 35.0%
CGCATGGAGTATAAGAAAAT+TGG - chr3_1:93325932-93325951 Msa0388850:intron 35.0%
GCTTTGCTTATTATGCATTC+AGG - chr3_1:93326022-93326041 Msa0388850:CDS 35.0%
TTACACTTTAGTAGGAGATG+AGG + chr3_1:93326119-93326138 None:intergenic 35.0%
TGCCTTTCTTATGTGTATGA+TGG - chr3_1:93326571-93326590 Msa0388850:intron 35.0%
TGTTGTTGAAAGCTTTGCTT+TGG - chr3_1:93326608-93326627 Msa0388850:intron 35.0%
! TTCAACCGAGTTTTCGAATT+TGG - chr3_1:93326880-93326899 Msa0388850:intron 35.0%
!!! TGTGTGTAGAAGTACTTTTC+TGG - chr3_1:93326955-93326974 Msa0388850:intron 35.0%
GAGCATATTGTTGATCTGAA+AGG - chr3_1:93327037-93327056 Msa0388850:intron 35.0%
!!! TAATTTTTGGTTTGTGGTGG+AGG - chr3_1:93327127-93327146 Msa0388850:CDS 35.0%
! GAGAAGGATTTGTTTGGTTA+TGG - chr3_1:93327270-93327289 Msa0388850:intron 35.0%
! AAGGATTTGTTTGGTTATGG+TGG - chr3_1:93327273-93327292 Msa0388850:intron 35.0%
ATTTAACACGAAATAGGCTC+TGG - chr3_1:93327411-93327430 Msa0388850:intron 35.0%
! AATCCTTGTCATTTCAATCC+GGG + chr3_1:93327732-93327751 None:intergenic 35.0%
! CAATCCTTGTCATTTCAATC+CGG + chr3_1:93327733-93327752 None:intergenic 35.0%
! AGAGTGTTCAGAATAAGTCA+TGG - chr3_1:93327851-93327870 Msa0388850:intron 35.0%
! AACACATTTTACCCAAGGTA+AGG + chr3_1:93327899-93327918 None:intergenic 35.0%
TATGGAAAACTCTTCGTGTA+AGG - chr3_1:93328065-93328084 Msa0388850:intron 35.0%
AACGAAGAACAACATAGAGA+TGG + chr3_1:93328338-93328357 None:intergenic 35.0%
ATGCTAGAACTGATGATTCA+TGG + chr3_1:93328368-93328387 None:intergenic 35.0%
! ATGAATCATCAGTTCTAGCA+TGG - chr3_1:93328367-93328386 Msa0388850:intron 35.0%
ACATAGTTGCAAAACTCCAA+GGG + chr3_1:93328443-93328462 None:intergenic 35.0%
AACATAGTTGCAAAACTCCA+AGG + chr3_1:93328444-93328463 None:intergenic 35.0%
!! AAGAACAAAAAGTGTTGGTC+AGG - chr3_1:93328562-93328581 Msa0388850:intron 35.0%
CTCACATGAAAGCTAACAAT+TGG - chr3_1:93328773-93328792 Msa0388850:intron 35.0%
TATCGCAGTTGAGTCTAAAT+TGG + chr3_1:93329122-93329141 None:intergenic 35.0%
! TATCACTGATAGTGTTATCG+GGG - chr3_1:93329172-93329191 Msa0388850:intron 35.0%
! ATGGAAGATTTTGCAGTTCT+AGG + chr3_1:93329328-93329347 None:intergenic 35.0%
AAAATCTTCCATTCAGTGGT+TGG - chr3_1:93329336-93329355 Msa0388850:intron 35.0%
AAATCTTCCATTCAGTGGTT+GGG - chr3_1:93329337-93329356 Msa0388850:intron 35.0%
ATGCAGCTCAATTCATTCAT+TGG - chr3_1:93329522-93329541 Msa0388850:intron 35.0%
!! ATTGGCTTGTGTAAGTTACA+AGG - chr3_1:93329540-93329559 Msa0388850:CDS 35.0%
GTTGACAAGAATGCTAGAAT+TGG - chr3_1:93329686-93329705 Msa0388850:intron 35.0%
AAACATAGATTGCCTTCTTG+CGG - chr3_1:93329891-93329910 Msa0388850:intron 35.0%
!!! GCACCGACATTTTTTATTGA+AGG - chr3_1:93329959-93329978 Msa0388850:intron 35.0%
TTTCCTTCATAGGAAAGCTT+TGG - chr3_1:93330111-93330130 Msa0388850:intron 35.0%
GATGAACTCTTCACATTTGA+AGG + chr3_1:93330301-93330320 None:intergenic 35.0%
GAATTTCAAATTGCATGTGG+GGG - chr3_1:93330667-93330686 Msa0388850:intron 35.0%
! GTACAGTTTGAGAGTGTAAA+TGG - chr3_1:93330794-93330813 Msa0388850:five_prime_UTR 35.0%
GAGAAGAGAGAAGAGAGAAA+AGG - chr3_1:93324262-93324281 Msa0388850:three_prime_UTR 40.0%
!!! TGCACCGATTTTAGAAGCAA+AGG - chr3_1:93324426-93324445 Msa0388850:three_prime_UTR 40.0%
! TTGATCTGAATGGTGCTAGA+TGG - chr3_1:93324759-93324778 Msa0388850:intron 40.0%
AGAGCTGCAATTAAGTTCAG+AGG - chr3_1:93325295-93325314 Msa0388850:intron 40.0%
! ATTTGAAGCCGGTGAGTTAT+GGG - chr3_1:93325362-93325381 Msa0388850:intron 40.0%
TATTCTTCCCCATAACTCAC+CGG + chr3_1:93325373-93325392 None:intergenic 40.0%
! TTTAAGAAGCGCAAGTCTCT+TGG - chr3_1:93325610-93325629 Msa0388850:intron 40.0%
! TGATGTTGGCTACTTTGTGA+TGG - chr3_1:93325998-93326017 Msa0388850:CDS 40.0%
ATTCAGGTGTCTTTCTTGCT+GGG - chr3_1:93326038-93326057 Msa0388850:intron 40.0%
!! TGGCTGTTTCTTCTTGTGAT+TGG - chr3_1:93326275-93326294 Msa0388850:intron 40.0%
ACCATCATAGACCAGTCATT+GGG + chr3_1:93326473-93326492 None:intergenic 40.0%
AACCATCATAGACCAGTCAT+TGG + chr3_1:93326474-93326493 None:intergenic 40.0%
! AATGTGACTTGCCAAACTCA+GGG - chr3_1:93326662-93326681 Msa0388850:intron 40.0%
TAAGAGCAAGAGAAGAGAAG+AGG - chr3_1:93327778-93327797 Msa0388850:intron 40.0%
AAGAGCAAGAGAAGAGAAGA+GGG - chr3_1:93327779-93327798 Msa0388850:intron 40.0%
!! CAATGGCAAGAGCTTTGAAT+TGG - chr3_1:93327814-93327833 Msa0388850:intron 40.0%
!! GGTAAGGCTCTAAGCTAAAA+AGG + chr3_1:93327883-93327902 None:intergenic 40.0%
! TTTAGCTTAGAGCCTTACCT+TGG - chr3_1:93327884-93327903 Msa0388850:intron 40.0%
TTAGCTTAGAGCCTTACCTT+GGG - chr3_1:93327885-93327904 Msa0388850:intron 40.0%
! TGTGTAAAGCTCTAATGCCA+AGG - chr3_1:93328014-93328033 Msa0388850:intron 40.0%
! GTGTAAAGCTCTAATGCCAA+GGG - chr3_1:93328015-93328034 Msa0388850:intron 40.0%
GCATGAGTGATGAAGCAATA+TGG - chr3_1:93328047-93328066 Msa0388850:intron 40.0%
CATAGTTGCAAAACTCCAAG+GGG + chr3_1:93328442-93328461 None:intergenic 40.0%
CTTCAATTGAGAGGGAGTTA+TGG + chr3_1:93328696-93328715 None:intergenic 40.0%
! TTAGCTTTCATGTGAGCAGT+TGG + chr3_1:93328769-93328788 None:intergenic 40.0%
TCCACTTCACAACTTATCTG+CGG + chr3_1:93328834-93328853 None:intergenic 40.0%
CTGCAAAATCTTCCATTCAG+TGG - chr3_1:93329332-93329351 Msa0388850:intron 40.0%
GACCAAAGATTAGGAACAGA+GGG + chr3_1:93329831-93329850 None:intergenic 40.0%
AGACCAAAGATTAGGAACAG+AGG + chr3_1:93329832-93329851 None:intergenic 40.0%
GCTTTCCTATGAAGGAAATC+AGG + chr3_1:93330109-93330128 None:intergenic 40.0%
! TGACAACAGGCAGATTTTGA+TGG - chr3_1:93330267-93330286 Msa0388850:intron 40.0%
!! CAGGCAGATTTTGATGGAAA+TGG - chr3_1:93330273-93330292 Msa0388850:intron 40.0%
CAATGAGTGTTCACATGAGA+AGG - chr3_1:93330322-93330341 Msa0388850:intron 40.0%
TTATCCAAGTCGACATCGTT+GGG + chr3_1:93330380-93330399 None:intergenic 40.0%
!! ATGTCGACTTGGATAAGGTA+AGG - chr3_1:93330384-93330403 Msa0388850:intron 40.0%
AAGGCAATGATGAAGACAAG+AGG - chr3_1:93330532-93330551 Msa0388850:CDS 40.0%
TGATGAAGACAAGAGGAGAT+TGG - chr3_1:93330539-93330558 Msa0388850:CDS 40.0%
GACAAGAGGAGATTGGAAAA+TGG - chr3_1:93330546-93330565 Msa0388850:CDS 40.0%
GCATGCTGCTGAATAATTAG+TGG + chr3_1:93330744-93330763 None:intergenic 40.0%
AAGGGAACGAGAGAAAGAAG+AGG - chr3_1:93324281-93324300 Msa0388850:three_prime_UTR 45.0%
AGGGAACGAGAGAAAGAAGA+GGG - chr3_1:93324282-93324301 Msa0388850:three_prime_UTR 45.0%
AGAGAAAGAAGAGGGAACGA+AGG - chr3_1:93324290-93324309 Msa0388850:three_prime_UTR 45.0%
GAGAAAGAAGAGGGAACGAA+GGG - chr3_1:93324291-93324310 Msa0388850:three_prime_UTR 45.0%
ATTGGGGCTGAAAAGGGTTA+GGG + chr3_1:93324513-93324532 None:intergenic 45.0%
AATTGGGGCTGAAAAGGGTT+AGG + chr3_1:93324514-93324533 None:intergenic 45.0%
! ATGGGGTTTGGGTTTGCAAT+TGG - chr3_1:93324609-93324628 Msa0388850:three_prime_UTR 45.0%
! GATTTGAAGCCGGTGAGTTA+TGG - chr3_1:93325361-93325380 Msa0388850:intron 45.0%
! TTTGAAGCCGGTGAGTTATG+GGG - chr3_1:93325363-93325382 Msa0388850:intron 45.0%
CATTCAGGTGTCTTTCTTGC+TGG - chr3_1:93326037-93326056 Msa0388850:intron 45.0%
AAGCATACACTCCCAATGAC+TGG - chr3_1:93326459-93326478 Msa0388850:intron 45.0%
!! TCCCAATGACTGGTCTATGA+TGG - chr3_1:93326469-93326488 Msa0388850:intron 45.0%
! GAATGTGACTTGCCAAACTC+AGG - chr3_1:93326661-93326680 Msa0388850:intron 45.0%
! ATGTGACTTGCCAAACTCAG+GGG - chr3_1:93326663-93326682 Msa0388850:intron 45.0%
! GAAATATTTGGTTCACCGCC+CGG - chr3_1:93327711-93327730 Msa0388850:intron 45.0%
CTCATGCTTTCTTCATCCCT+TGG + chr3_1:93328034-93328053 None:intergenic 45.0%
! TTGGTGTGTTACTGTCGTCA+AGG - chr3_1:93328205-93328224 Msa0388850:intron 45.0%
TGTTACTGTCGTCAAGGTCT+TGG - chr3_1:93328211-93328230 Msa0388850:intron 45.0%
ATCATGTGTATGCAACCCCT+TGG - chr3_1:93328424-93328443 Msa0388850:intron 45.0%
CCACTTCACAACTTATCTGC+GGG + chr3_1:93328833-93328852 None:intergenic 45.0%
! ACTGATAGTGTTATCGGGGA+AGG - chr3_1:93329176-93329195 Msa0388850:intron 45.0%
CTGCATTCTTGCATATCAGG+AGG - chr3_1:93329360-93329379 Msa0388850:intron 45.0%
GATGGGCGCATATTATTACG+AGG - chr3_1:93329407-93329426 Msa0388850:intron 45.0%
GAGTTTCTGCCAATACCAAG+TGG + chr3_1:93329647-93329666 None:intergenic 45.0%
GAACAGAGGGAGTAGATGAT+GGG + chr3_1:93329818-93329837 None:intergenic 45.0%
CTCCCTCTGTTCCTAATCTT+TGG - chr3_1:93329826-93329845 Msa0388850:CDS 45.0%
CACACATGTTGCTGTCATGT+CGG + chr3_1:93329997-93330016 None:intergenic 45.0%
CAGCCAAAGCTTTCCTATGA+AGG + chr3_1:93330117-93330136 None:intergenic 45.0%
AGTGTTCACATGAGAAGGCT+TGG - chr3_1:93330327-93330346 Msa0388850:intron 45.0%
CTTATCCAAGTCGACATCGT+TGG + chr3_1:93330381-93330400 None:intergenic 45.0%
!! CAACGATGTCGACTTGGATA+AGG - chr3_1:93330379-93330398 Msa0388850:intron 45.0%
! GGATGGTCGAGTAAGTTTTG+AGG - chr3_1:93330504-93330523 Msa0388850:intron 45.0%
! CAAATTGCATGTGGGGGTAT+AGG - chr3_1:93330673-93330692 Msa0388850:intron 45.0%
CCTCACACTTTCTTCAGATG+AGG + chr3_1:93330829-93330848 None:intergenic 45.0%
! CCTCATCTGAAGAAAGTGTG+AGG - chr3_1:93330826-93330845 Msa0388850:five_prime_UTR 45.0%
!! ATATATATATATATATATCA+AGG - chr3_1:93326231-93326250 Msa0388850:intron 5.0%
AGAGAAACGGGAGAGGAAGA+AGG - chr3_1:93324185-93324204 Msa0388850:three_prime_UTR 50.0%
GAGAAACGGGAGAGGAAGAA+GGG - chr3_1:93324186-93324205 Msa0388850:three_prime_UTR 50.0%
! TCTCCCGTTCCTGTTTCTCT+CGG + chr3_1:93324318-93324337 None:intergenic 50.0%
AGAGAGAACGGAAGAGGAGA+GGG - chr3_1:93324353-93324372 Msa0388850:three_prime_UTR 50.0%
!! GTGCAGATCAGAGTGTTGGA+CGG + chr3_1:93324411-93324430 None:intergenic 50.0%
ATCGGTGCAGATCAGAGTGT+TGG + chr3_1:93324415-93324434 None:intergenic 50.0%
GGCTGAAAAGGGTTAGGGTT+TGG + chr3_1:93324508-93324527 None:intergenic 50.0%
! GGGTTTGGGTTTGCAATTGG+AGG - chr3_1:93324612-93324631 Msa0388850:three_prime_UTR 50.0%
CGGGGGTTATCAGTACTCTT+TGG - chr3_1:93325137-93325156 Msa0388850:intron 50.0%
! CTTTGGTTCATGCAGCTGCT+TGG - chr3_1:93325154-93325173 Msa0388850:intron 50.0%
! TTGGTGCCTTAGCGATGGTA+AGG - chr3_1:93325629-93325648 Msa0388850:intron 50.0%
TGCTAGTAGTCCCCTGAGTT+TGG + chr3_1:93326676-93326695 None:intergenic 50.0%
! GTTTGTGGTGGAGGAGTTTC+TGG - chr3_1:93327136-93327155 Msa0388850:CDS 50.0%
! CCTTGTCATTTCAATCCGGG+CGG + chr3_1:93327729-93327748 None:intergenic 50.0%
AGAGAAGAGAAGAGGGCTGA+AGG - chr3_1:93327786-93327805 Msa0388850:intron 50.0%
GAGAAGAGAAGAGGGCTGAA+GGG - chr3_1:93327787-93327806 Msa0388850:intron 50.0%
TGAGTGAGAAATGGGAGGGA+GGG + chr3_1:93327963-93327982 None:intergenic 50.0%
TCCCTCCCATTTCTCACTCA+CGG - chr3_1:93327963-93327982 Msa0388850:intron 50.0%
ACGACCCGTGAGTGAGAAAT+GGG + chr3_1:93327971-93327990 None:intergenic 50.0%
AACGACCCGTGAGTGAGAAA+TGG + chr3_1:93327972-93327991 None:intergenic 50.0%
AGGCACAGAGAAGGATAGAC+TGG - chr3_1:93328582-93328601 Msa0388850:intron 50.0%
CCCGCAGATAAGTTGTGAAG+TGG - chr3_1:93328830-93328849 Msa0388850:intron 50.0%
GCATCAAGCATCTTCGACAG+AGG + chr3_1:93329149-93329168 None:intergenic 50.0%
CGGGGAAGGATGTGTGATTA+AGG - chr3_1:93329190-93329209 Msa0388850:intron 50.0%
AATGCAGCCCAACCACTGAA+TGG + chr3_1:93329347-93329366 None:intergenic 50.0%
GGGCTGCATTCTTGCATATC+AGG - chr3_1:93329357-93329376 Msa0388850:intron 50.0%
GCTAAAGGCAGTGTTCCACT+TGG - chr3_1:93329629-93329648 Msa0388850:CDS 50.0%
GGCAGTGTTCCACTTGGTAT+TGG - chr3_1:93329635-93329654 Msa0388850:CDS 50.0%
GGAACAGAGGGAGTAGATGA+TGG + chr3_1:93329819-93329838 None:intergenic 50.0%
TACACTACGATGCCGCAAGA+AGG + chr3_1:93329906-93329925 None:intergenic 50.0%
! CATTCCCAACGATGTCGACT+TGG - chr3_1:93330373-93330392 Msa0388850:intron 50.0%
AAACGGGAGAGGAAGAAGGG+TGG - chr3_1:93324189-93324208 Msa0388850:three_prime_UTR 55.0%
ACGAAGGGACCGAGAGAAAC+AGG - chr3_1:93324306-93324325 Msa0388850:three_prime_UTR 55.0%
GGGACCGAGAGAAACAGGAA+CGG - chr3_1:93324311-93324330 Msa0388850:three_prime_UTR 55.0%
GGACCGAGAGAAACAGGAAC+GGG - chr3_1:93324312-93324331 Msa0388850:three_prime_UTR 55.0%
GAGAGAAACAGGAACGGGAG+AGG - chr3_1:93324317-93324336 Msa0388850:three_prime_UTR 55.0%
ACAGGAACGGGAGAGGAAGA+AGG - chr3_1:93324324-93324343 Msa0388850:three_prime_UTR 55.0%
CAGGAACGGGAGAGGAAGAA+GGG - chr3_1:93324325-93324344 Msa0388850:three_prime_UTR 55.0%
AGAAGGGCGACGAGAGAGAA+CGG - chr3_1:93324341-93324360 Msa0388850:three_prime_UTR 55.0%
GAGAGAGAACGGAAGAGGAG+AGG - chr3_1:93324352-93324371 Msa0388850:three_prime_UTR 55.0%
!! GTCTCTTGGTGCCTTAGCGA+TGG - chr3_1:93325624-93325643 Msa0388850:intron 55.0%
CCGCCCGGATTGAAATGACA+AGG - chr3_1:93327726-93327745 Msa0388850:intron 55.0%
GAGGGCTGAAGGGATAGCAA+TGG - chr3_1:93327797-93327816 Msa0388850:intron 55.0%
TGAGAAATGGGAGGGAGGGA+GGG + chr3_1:93327959-93327978 None:intergenic 55.0%
GTGAGTGAGAAATGGGAGGG+AGG + chr3_1:93327964-93327983 None:intergenic 55.0%
CCCGTGAGTGAGAAATGGGA+GGG + chr3_1:93327967-93327986 None:intergenic 55.0%
CCCTCCCATTTCTCACTCAC+GGG - chr3_1:93327964-93327983 Msa0388850:intron 55.0%
ACCCGTGAGTGAGAAATGGG+AGG + chr3_1:93327968-93327987 None:intergenic 55.0%
! GTGTTGGTCAGGCACAGAGA+AGG - chr3_1:93328573-93328592 Msa0388850:intron 55.0%
GCGACGAGAGAGAACGGAAG+AGG - chr3_1:93324347-93324366 Msa0388850:three_prime_UTR 60.0%
!! GATCAGAGTGTTGGACGGCG+AGG + chr3_1:93324406-93324425 None:intergenic 60.0%
AAATGGGAGGGAGGGAGGGA+GGG + chr3_1:93327955-93327974 None:intergenic 60.0%
GTGAGAAATGGGAGGGAGGG+AGG + chr3_1:93327960-93327979 None:intergenic 60.0%
GTGTTGGACGGCGAGGTCGA+CGG + chr3_1:93324399-93324418 None:intergenic 65.0%
AATGGGAGGGAGGGAGGGAG+GGG + chr3_1:93327954-93327973 None:intergenic 65.0%
GAAATGGGAGGGAGGGAGGG+AGG + chr3_1:93327956-93327975 None:intergenic 65.0%
TTGGACGGCGAGGTCGACGG+CGG + chr3_1:93324396-93324415 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 93324180 93331002 93324180 ID=Msa0388850;Name=Msa0388850
chr3_1 mRNA 93324180 93331002 93324180 ID=Msa0388850-mRNA-1;Parent=Msa0388850;Name=Msa0388850-mRNA-1;_AED=0.31;_eAED=0.31;_QI=296|0.77|0.9|1|0.77|0.6|10|499|272
chr3_1 exon 93324180 93324677 93324180 ID=Msa0388850-mRNA-1:exon:26422;Parent=Msa0388850-mRNA-1
chr3_1 exon 93324777 93324906 93324777 ID=Msa0388850-mRNA-1:exon:26421;Parent=Msa0388850-mRNA-1
chr3_1 exon 93325461 93325580 93325461 ID=Msa0388850-mRNA-1:exon:26420;Parent=Msa0388850-mRNA-1
chr3_1 exon 93325754 93325852 93325754 ID=Msa0388850-mRNA-1:exon:26419;Parent=Msa0388850-mRNA-1
chr3_1 exon 93325971 93326054 93325971 ID=Msa0388850-mRNA-1:exon:26418;Parent=Msa0388850-mRNA-1
chr3_1 exon 93327101 93327170 93327101 ID=Msa0388850-mRNA-1:exon:26417;Parent=Msa0388850-mRNA-1
chr3_1 exon 93329532 93329674 93329532 ID=Msa0388850-mRNA-1:exon:26416;Parent=Msa0388850-mRNA-1
chr3_1 exon 93329810 93329897 93329810 ID=Msa0388850-mRNA-1:exon:26415;Parent=Msa0388850-mRNA-1
chr3_1 exon 93330527 93330631 93330527 ID=Msa0388850-mRNA-1:exon:26414;Parent=Msa0388850-mRNA-1
chr3_1 exon 93330726 93331002 93330726 ID=Msa0388850-mRNA-1:exon:26413;Parent=Msa0388850-mRNA-1
chr3_1 five_prime_UTR 93330726 93331002 93330726 ID=Msa0388850-mRNA-1:five_prime_utr;Parent=Msa0388850-mRNA-1
chr3_1 five_prime_UTR 93330613 93330631 93330613 ID=Msa0388850-mRNA-1:five_prime_utr;Parent=Msa0388850-mRNA-1
chr3_1 CDS 93330527 93330612 93330527 ID=Msa0388850-mRNA-1:cds;Parent=Msa0388850-mRNA-1
chr3_1 CDS 93329810 93329897 93329810 ID=Msa0388850-mRNA-1:cds;Parent=Msa0388850-mRNA-1
chr3_1 CDS 93329532 93329674 93329532 ID=Msa0388850-mRNA-1:cds;Parent=Msa0388850-mRNA-1
chr3_1 CDS 93327101 93327170 93327101 ID=Msa0388850-mRNA-1:cds;Parent=Msa0388850-mRNA-1
chr3_1 CDS 93325971 93326054 93325971 ID=Msa0388850-mRNA-1:cds;Parent=Msa0388850-mRNA-1
chr3_1 CDS 93325754 93325852 93325754 ID=Msa0388850-mRNA-1:cds;Parent=Msa0388850-mRNA-1
chr3_1 CDS 93325461 93325580 93325461 ID=Msa0388850-mRNA-1:cds;Parent=Msa0388850-mRNA-1
chr3_1 CDS 93324778 93324906 93324778 ID=Msa0388850-mRNA-1:cds;Parent=Msa0388850-mRNA-1
chr3_1 three_prime_UTR 93324777 93324777 93324777 ID=Msa0388850-mRNA-1:three_prime_utr;Parent=Msa0388850-mRNA-1
chr3_1 three_prime_UTR 93324180 93324677 93324180 ID=Msa0388850-mRNA-1:three_prime_utr;Parent=Msa0388850-mRNA-1
Gene Sequence

>Msa0388850

ATGTGTGTCTCCTTATTCAAAGAAAGCTTAATTGAAAGTATGGGGTTTGGGTTTGCAATTGGAGGAAGAAACAAGAAGAATTGGAGTGCATATGATAGAGCTGCAATTAAGTTCAGAGGAGTAGAGGCAGATATAAATTTCAACATTGAAGATTATGAAGAGGATTTGAAGCCGGTAGTTCGTCAATGTTTCTTAATCTCAGGTATCAACTCTTTCAAGTTTTTCATGGCATACAAAGGATTTTTTATGGTCAACGATGAGCTTCTTCTGCAAGTATTTAAGAAGCGCAAGTCTCTTGGTGCCTTAGCGATGGTAAGAATGTGTAAAGCTCTAATGCCAAGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGAAAACTCTTCGTACTCAACTGCGATATTTGCCTCTGTCGAAGATGCTTGATGCTGATATCACTGATAGTGTTATCGGGGAAGGATGTGTGATTAAGAACTGCAAAATCTTCCATTCAGTGGTTGGGCTGCATTCTTGCATATCAGGAGGTGCGATTATTGAAGACACTTTGTTGATGGGCGCATATTATTACGAGACAGAAGCTGATAAAAGTTTTTTGGCTGCTAAAGGCAGTGTTCCACTTGGTATTGGCAGAAACTCCCGTATCAAAAGAGCAATTGTTGACAAGAATGCTAGAATTGGAGAAAATGTGAAGGCAGATTTTGATGGAAATGGCACCTTCAAATGTGAAGAGTTCATCACAATGAGTGTTCACATGAGAAGGCTTGGAAATGATGAGCATCTCACAAAAGCATTCCCAACGATGTCGACTTGGATAAGGTAA
Protein sequence

>Msa0388850

MCVSLFKESLIESMGFGFAIGGRNKKNWSAYDRAAIKFRGVEADINFNIEDYEEDLKPVVRQCFLISGINSFKFFMAYKGFFMVNDELLLQVFKKRKSLGALAMVRMCKALMPRDEESMSDEAIWKTLRTQLRYLPLSKMLDADITDSVIGEGCVIKNCKIFHSVVGLHSCISGGAIIEDTLLMGAYYYETEADKSFLAAKGSVPLGIGRNSRIKRAIVDKNARIGENVKADFDGNGTFKCEEFITMSVHMRRLGNDEHLTKAFPTMSTWIR*