AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1290730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1290730 MtrunA17_Chr8g0364941 97.697 521 7 2 1 516 1 521 0.0 1044
Msa1290730 MtrunA17_Chr5g0413801 67.332 551 116 10 22 516 18 560 0.0 676
Msa1290730 MtrunA17_Chr6g0451131 48.785 576 219 13 1 516 1 560 3.66e-169 489
Msa1290730 MtrunA17_Chr2g0315511 40.979 388 190 9 14 394 10 365 7.33e-79 255
Msa1290730 MtrunA17_Chr8g0359721 58.170 153 63 1 119 271 24 175 1.72e-52 176
Msa1290730 MtrunA17_Chr8g0364901 38.916 203 113 6 71 267 31 228 1.61e-33 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1290730 AT1G70280.2 65.236 466 142 5 24 485 20 469 0.0 565
Msa1290730 AT1G23880.1 61.237 485 161 8 1 482 61 521 0.0 559
Msa1290730 AT1G70280.1 66.430 423 122 5 67 485 1 407 0.0 524
Msa1290730 AT1G23880.2 62.830 417 134 5 67 482 1 397 6.21e-174 497
Msa1290730 AT5G14890.1 47.937 509 199 14 20 514 21 477 3.96e-142 418
Msa1290730 AT3G14860.2 41.499 347 172 8 52 394 55 374 1.15e-74 244
Msa1290730 AT3G14860.1 40.922 347 173 7 52 394 55 373 1.22e-74 244
Msa1290730 AT1G23890.1 48.023 177 87 4 63 237 18 191 1.82e-42 152
Msa1290730 AT1G23890.2 49.412 170 81 4 70 237 25 191 1.64e-41 154

Find 161 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTCAGAACTTGTTTC+TGG 0.022910 8_3:-45709192 Msa1290730:intron
CTTCTTTCTCAACATGAATT+AGG 0.081628 8_3:-45709475 Msa1290730:five_prime_UTR
ATCAACATATATCAAAATTT+TGG 0.151565 8_3:-45709719 Msa1290730:five_prime_UTR
CTCATTCTTCATCTTCTCTT+TGG 0.186851 8_3:-45709341 Msa1290730:CDS
CTTGTTGGGGCTGGTTTCTT+TGG 0.229956 8_3:-45706667 Msa1290730:CDS
CAGGAATTGCAATGCTTGTT+GGG 0.255059 8_3:-45706681 Msa1290730:CDS
TTCTTTCTCAACATGAATTA+GGG 0.263795 8_3:-45709474 Msa1290730:five_prime_UTR
TTTAAACAACAATGGTAATT+AGG 0.264246 8_3:-45705420 Msa1290730:three_prime_UTR
TGTTGCAGATACTGCAAATA+TGG 0.266517 8_3:-45707218 Msa1290730:CDS
AAGCAGGAAGAAAGTTTCTT+TGG 0.273520 8_3:-45706198 Msa1290730:CDS
TCCATATTCCATACCAGTTT+TGG 0.280048 8_3:+45709110 None:intergenic
AAGCCATAGAAATCTATATT+TGG 0.290099 8_3:+45705447 None:intergenic
TCAGTGTTTGCCTTTGAAAT+TGG 0.298813 8_3:+45706079 None:intergenic
GACTCAATCCAGCTTTGATT+TGG 0.302071 8_3:-45705550 Msa1290730:three_prime_UTR
TCACTTGCTTCTGAGATTGT+TGG 0.308982 8_3:+45706055 None:intergenic
CAGAGGAAACCAAGCCATTA+GGG 0.312716 8_3:-45706868 Msa1290730:CDS
GGATCAGCTGAAGGATATTC+TGG 0.315805 8_3:-45707319 Msa1290730:CDS
TTGCCAAATATAGATTTCTA+TGG 0.328212 8_3:-45705450 Msa1290730:three_prime_UTR
CAACAATTGCTGGAGGAAAA+TGG 0.329939 8_3:-45706995 Msa1290730:CDS
GAAAGTTTCTTTGGATCTCT+TGG 0.345987 8_3:-45706189 Msa1290730:CDS
ACAGAGGAAACCAAGCCATT+AGG 0.349242 8_3:-45706869 Msa1290730:CDS
GCAGGAATTGCAATGCTTGT+TGG 0.361301 8_3:-45706682 Msa1290730:intron
CTCGTCAATGGTGGAGATAA+TGG 0.361575 8_3:-45706145 Msa1290730:CDS
TCATTTCAGAACTTGTTTCT+GGG 0.363224 8_3:-45709191 Msa1290730:intron
ATACTGCAAATATGGCAATT+AGG 0.364589 8_3:-45707210 Msa1290730:CDS
GTCATCACACCTGTTGAATA+TGG 0.365763 8_3:-45705670 Msa1290730:CDS
TCAGGGGTCACAACAATTGC+TGG 0.373460 8_3:-45707005 Msa1290730:intron
ATTAGGAAAATTAGTGATTC+GGG 0.377436 8_3:-45707193 Msa1290730:intron
CTTAAAGCTACCACCAAAAC+TGG 0.381528 8_3:-45709123 Msa1290730:intron
GATGATTGTGCATATCGATA+TGG 0.382744 8_3:-45706828 Msa1290730:CDS
AATTAGGAAAATTAGTGATT+CGG 0.383780 8_3:-45707194 Msa1290730:CDS
AGTATTGAGTATATATAGTT+AGG 0.386080 8_3:-45705591 Msa1290730:exon
GCTGATCCAGCCACCAGCTT+CGG 0.391616 8_3:+45707334 None:intergenic
TCATCAACAGTTATCCCCTT+TGG 0.399379 8_3:+45707256 None:intergenic
GACATGTTGATGGGAGGCTC+AGG 0.403629 8_3:-45707297 Msa1290730:CDS
TGGTTTCTTTGGTTATATGC+TGG 0.403960 8_3:-45706656 Msa1290730:CDS
ATCCAGCTTTGATTTGGAAT+GGG 0.408218 8_3:-45705544 Msa1290730:three_prime_UTR
AAATGAAGAACAAGTTGTTA+TGG 0.413482 8_3:+45709402 None:intergenic
GGTGCCCTTGTGTCGATAGA+TGG 0.413822 8_3:+45705982 None:intergenic
TGTGGTCTTCTTCTGAAAAC+AGG 0.420773 8_3:+45706111 None:intergenic
CTTGCAGGTGAAGTGGTTGA+TGG 0.422939 8_3:+45709290 None:intergenic
CTCAGAAGCAAGTGAATGAT+TGG 0.423951 8_3:-45706047 Msa1290730:CDS
CCAATGGTGGATAACAATTC+TGG 0.430377 8_3:+45709742 None:intergenic
GGTAAGCTTCTTGCGAATGC+TGG 0.432610 8_3:-45706168 Msa1290730:CDS
TGGAGGCCTTACAGATTTCA+AGG 0.434455 8_3:+45706248 None:intergenic
AATGTGGAAACTGTGTTTGA+TGG 0.436794 8_3:-45708956 Msa1290730:CDS
GACTTTGATGTGGTTTATGT+TGG 0.439630 8_3:-45706918 Msa1290730:CDS
GTTGGATCTCCCTAATGGCT+TGG 0.442364 8_3:+45706859 None:intergenic
TGCAGATAGCAGACCGAAGC+TGG 0.445900 8_3:-45707347 Msa1290730:intron
GCATTGCTGCAGCGTAGGCT+CGG 0.449626 8_3:-45706634 Msa1290730:CDS
TGCAAAACCTCAACAGCATA+AGG 0.450890 8_3:+45708914 None:intergenic
TATGGCAGTGATTTCCCTCT+TGG 0.451443 8_3:-45706810 Msa1290730:intron
ACAGAAGGCATTACTGTTAG+TGG 0.454864 8_3:+45706294 None:intergenic
CGGTACAATTGTAGAATCTC+AGG 0.455028 8_3:-45706614 Msa1290730:CDS
TGCGAATGCTGGCTCGTCAA+TGG 0.455318 8_3:-45706157 Msa1290730:CDS
CAATTCATATTATGATCATC+AGG 0.456575 8_3:+45705484 None:intergenic
AGGTTAAGAGAGAGAGGGAA+AGG 0.459417 8_3:+45709616 None:intergenic
AATCCAGCTTTGATTTGGAA+TGG 0.459606 8_3:-45705545 Msa1290730:three_prime_UTR
CACAATCATCAAAGTGGAGT+TGG 0.462222 8_3:+45706841 None:intergenic
ATTGCAATGCTTGTTGGGGC+TGG 0.462265 8_3:-45706676 Msa1290730:CDS
AGCAGACCGAAGCTGGTGGC+TGG 0.465719 8_3:-45707340 Msa1290730:CDS
TCGTCAATGGTGGAGATAAT+GGG 0.467902 8_3:-45706144 Msa1290730:CDS
TCATATTCTGATGGAATCAA+TGG 0.473880 8_3:+45706228 None:intergenic
ATCACGAAACTTTCCTGTGC+TGG 0.477387 8_3:+45706024 None:intergenic
TTATGTTTAGCATGTGAATC+CGG 0.477967 8_3:+45709872 None:intergenic
GCAGGAACAGGAGGGGAAGA+AGG 0.479757 8_3:-45705701 Msa1290730:CDS
GAAAATTTAGCTTCTTCACT+TGG 0.479921 8_3:+45706945 None:intergenic
TGTGAAAGGTTAAGAGAGAG+AGG 0.480100 8_3:+45709610 None:intergenic
AGGAAAATGGAGCCGTGGAG+GGG 0.481087 8_3:-45706982 Msa1290730:CDS
GGAAAATGGAGCCGTGGAGG+GGG 0.481323 8_3:-45706981 Msa1290730:CDS
GACAAGAGAGTGACTACTAG+TGG 0.488891 8_3:+45709663 None:intergenic
GGATATTCTGGACATGTTGA+TGG 0.492558 8_3:-45707307 Msa1290730:CDS
CCAGAATTGTTATCCACCAT+TGG 0.495511 8_3:-45709742 Msa1290730:five_prime_UTR
GGTTAAGAGAGAGAGGGAAA+GGG 0.496937 8_3:+45709617 None:intergenic
AATGAGCCTCCATATTCAAC+AGG 0.498016 8_3:+45705661 None:intergenic
GAGGAAAATGGAGCCGTGGA+GGG 0.498407 8_3:-45706983 Msa1290730:CDS
GTGGAGTTGGATCTCCCTAA+TGG 0.498446 8_3:+45706854 None:intergenic
ATGGGAGGCTCAGGGAGGCT+AGG 0.499515 8_3:-45707288 Msa1290730:CDS
AGAATATGAACCCGAAAAGC+AGG 0.507195 8_3:-45706214 Msa1290730:CDS
TTCCTCTGTCTACAACAAGC+AGG 0.507435 8_3:+45706883 None:intergenic
AAAAGCCCTTGAAATCTGTA+AGG 0.509266 8_3:-45706254 Msa1290730:CDS
TCCCCATTCCAAATCAAAGC+TGG 0.509734 8_3:+45705542 None:intergenic
TGGGGCAGTGCAGGAACAGG+AGG 0.528931 8_3:-45705710 Msa1290730:CDS
AACAACAATGGTAATTAGGA+AGG 0.530711 8_3:-45705416 Msa1290730:three_prime_UTR
AGTGAATGATTGGCCAGCAC+AGG 0.531678 8_3:-45706037 Msa1290730:CDS
GTTTAGCATGTGAATCCGGT+TGG 0.533562 8_3:+45709876 None:intergenic
GCATTCTACAGCGGGTGGGA+TGG 0.534762 8_3:-45705889 Msa1290730:CDS
TTTCTAGAGACTACACCAAA+AGG 0.537307 8_3:+45709695 None:intergenic
TCTGCATCTTTCGACATGAA+AGG 0.538618 8_3:+45705940 None:intergenic
GGCTGCTGTTGTTGTTGATG+TGG 0.540640 8_3:+45705835 None:intergenic
CAACAGTTATCCCCTTTGGA+TGG 0.541128 8_3:+45707260 None:intergenic
ATCTTTCGACATGAAAGGAT+AGG 0.541256 8_3:+45705945 None:intergenic
GGAGGAAAATGGAGCCGTGG+AGG 0.541631 8_3:-45706984 Msa1290730:CDS
AATTGAGCCTTATGCTGTTG+AGG 0.544199 8_3:-45708921 Msa1290730:CDS
TGTTGTTGTTGATGTGGTTG+CGG 0.544910 8_3:+45705841 None:intergenic
TCGGTCTCGAATGAGTTACA+TGG 0.544992 8_3:-45705620 Msa1290730:CDS
GTGTTTGATGGAAGTAAGCT+TGG 0.547130 8_3:-45708944 Msa1290730:CDS
TCCAGCTTTGATTTGGAATG+GGG 0.547637 8_3:-45705543 Msa1290730:three_prime_UTR
GTGTTTGCCTTTGAAATTGG+TGG 0.549431 8_3:+45706082 None:intergenic
AAAGTAAAGCATTCTACAGC+GGG 0.550622 8_3:-45705897 Msa1290730:CDS
GTGATGAAGAGATTCTGTAA+AGG 0.551414 8_3:+45708852 None:intergenic
AACAATGGTAATTAGGAAGG+TGG 0.551782 8_3:-45705413 Msa1290730:three_prime_UTR
CTGCAACATAAATATTTCCT+CGG 0.552933 8_3:+45707233 None:intergenic
GCTTGTTGTTTAAACAACAA+TGG 0.553198 8_3:-45705428 Msa1290730:three_prime_UTR
GCTAGGATGAACCATCCAAA+GGG 0.554047 8_3:-45707271 Msa1290730:CDS
GATATTCTGGACATGTTGAT+GGG 0.558030 8_3:-45707306 Msa1290730:CDS
TTTGATATATGTTGATCCAA+TGG 0.563572 8_3:+45709726 None:intergenic
CGGTCTCGAATGAGTTACAT+GGG 0.565662 8_3:-45705619 Msa1290730:CDS
TGAAGAACAAGTTGTTATGG+AGG 0.567248 8_3:+45709405 None:intergenic
ACATGTTGATGGGAGGCTCA+GGG 0.573249 8_3:-45707296 Msa1290730:CDS
AGCTTTGATTTGGAATGGGG+AGG 0.573423 8_3:-45705540 Msa1290730:three_prime_UTR
AAGTGTGAGGGACCGACGAT+TGG 0.581409 8_3:+45705773 None:intergenic
GGGAGGATGAAATCAAATGT+AGG 0.583262 8_3:-45705523 Msa1290730:three_prime_UTR
ACAAGAGAGTGACTACTAGT+GGG 0.583631 8_3:+45709664 None:intergenic
ACAATGGTAATTAGGAAGGT+GGG 0.584672 8_3:-45705412 Msa1290730:three_prime_UTR
GATATGCACAATCATCAAAG+TGG 0.588148 8_3:+45706835 None:intergenic
GGGGCAGTGCAGGAACAGGA+GGG 0.589930 8_3:-45705709 Msa1290730:CDS
TGCTGGCATTGCTGCAGCGT+AGG 0.592474 8_3:-45706639 Msa1290730:CDS
GGAGGCCTTACAGATTTCAA+GGG 0.593740 8_3:+45706249 None:intergenic
GGCTAGGATGAACCATCCAA+AGG 0.596756 8_3:-45707272 Msa1290730:CDS
AGAGCTACCACCAATTTCAA+AGG 0.597932 8_3:-45706089 Msa1290730:CDS
CTGGTGGCTGGATCAGCTGA+AGG 0.598904 8_3:-45707328 Msa1290730:CDS
GGACCGACGATTGGTACTGA+TGG 0.601463 8_3:+45705782 None:intergenic
TATGTAGTTTGAGAAACAGA+AGG 0.609655 8_3:+45706279 None:intergenic
AGAAAAGAGAGGAAAATGAG+TGG 0.611244 8_3:+45709556 None:intergenic
GTGAAAGGTTAAGAGAGAGA+GGG 0.612420 8_3:+45709611 None:intergenic
GTACTTACTTGCAGGTGAAG+TGG 0.615067 8_3:+45709283 None:intergenic
AGGAATTGCAATGCTTGTTG+GGG 0.616374 8_3:-45706680 Msa1290730:CDS
TCCCTGCTTGTTGTAGACAG+AGG 0.617020 8_3:-45706885 Msa1290730:CDS
ATGGTGGATAACAATTCTGG+TGG 0.617801 8_3:+45709745 None:intergenic
GTGAGTGAGAAGAGTGTGAA+AGG 0.617988 8_3:+45709596 None:intergenic
GGGCAGTGCAGGAACAGGAG+GGG 0.624818 8_3:-45705708 Msa1290730:CDS
TCCTCTGTCTACAACAAGCA+GGG 0.626459 8_3:+45706884 None:intergenic
GTAAAGCATTCTACAGCGGG+TGG 0.626899 8_3:-45705894 Msa1290730:CDS
GATATATGTTGATCCAATGG+TGG 0.628637 8_3:+45709729 None:intergenic
GGGTTCTTAGCAGAAAAGAG+AGG 0.635422 8_3:+45709545 None:intergenic
TGAAATTGGTGGTAGCTCTG+TGG 0.637791 8_3:+45706093 None:intergenic
ATCACACCTGTTGAATATGG+AGG 0.639031 8_3:-45705667 Msa1290730:CDS
AACCACCATCTATCGACACA+AGG 0.640539 8_3:-45705987 Msa1290730:CDS
TAAAGCATTCTACAGCGGGT+GGG 0.645434 8_3:-45705893 Msa1290730:CDS
TATTCTGATGGAATCAATGG+AGG 0.648038 8_3:+45706231 None:intergenic
CTTCACTTGGTCCATCAACG+TGG 0.652333 8_3:+45706958 None:intergenic
TCAATGATGAAGTTTGAGAG+TGG 0.653433 8_3:-45708983 Msa1290730:CDS
GGAGGGGAAGAAGGAATCTG+TGG 0.656900 8_3:-45705692 Msa1290730:CDS
ATTCTGGACATGTTGATGGG+AGG 0.671648 8_3:-45707303 Msa1290730:CDS
GTTTGAGAGTGGTTACAATG+TGG 0.673385 8_3:-45708972 Msa1290730:CDS
AGATAGCAGACCGAAGCTGG+TGG 0.673593 8_3:-45707344 Msa1290730:CDS
GCTGGAGGAAAATGGAGCCG+TGG 0.674332 8_3:-45706987 Msa1290730:CDS
TCGCCATCAGTACCAATCGT+CGG 0.674819 8_3:-45705785 Msa1290730:CDS
GGGGTCACAACAATTGCTGG+AGG 0.677079 8_3:-45707002 Msa1290730:CDS
GATGGTGGTTCGTCTTCGCG+AGG 0.678196 8_3:+45706000 None:intergenic
CAAAGTAAAGCATTCTACAG+CGG 0.680426 8_3:-45705898 Msa1290730:CDS
GGGATAACTGTTGATGACCG+AGG 0.680794 8_3:-45707250 Msa1290730:CDS
GAATGCTGGCTCGTCAATGG+TGG 0.682237 8_3:-45706154 Msa1290730:CDS
AAGCAATGAGACAACCAATG+AGG 0.687276 8_3:-45705740 Msa1290730:CDS
ACCACCATCTATCGACACAA+GGG 0.689737 8_3:-45705986 Msa1290730:CDS
GCCCTTGTGTCGATAGATGG+TGG 0.693655 8_3:+45705985 None:intergenic
TCAATGGTGGAGATAATGGG+AGG 0.703995 8_3:-45706141 Msa1290730:CDS
CAAGAGAGTGACTACTAGTG+GGG 0.708351 8_3:+45709665 None:intergenic
TGTTGATGGGAGGCTCAGGG+AGG 0.745216 8_3:-45707293 Msa1290730:CDS
CTAGGATGAACCATCCAAAG+GGG 0.746879 8_3:-45707270 Msa1290730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTAATGTAATG+TGG + chr8_3:45705708-45705727 None:intergenic 10.0%
!!! TGTTTTTTAGATTTATAATT+TGG - chr8_3:45706461-45706480 Msa1290730:intron 10.0%
!!! ATTTAATGATTATTACTTTT+TGG - chr8_3:45706499-45706518 Msa1290730:intron 10.0%
!!! ATCAACATATATCAAAATTT+TGG - chr8_3:45705499-45705518 Msa1290730:three_prime_UTR 15.0%
!!! AATTAAGATATCTTTTTTTC+AGG - chr8_3:45708195-45708214 Msa1290730:intron 15.0%
!!! ATTAAGATATCTTTTTTTCA+GGG - chr8_3:45708196-45708215 Msa1290730:intron 15.0%
!!! TTGAATTTTTATAACACAAT+TGG - chr8_3:45708671-45708690 Msa1290730:intron 15.0%
!!! TTTAGTTTTTAGCTTAAGAA+AGG + chr8_3:45705425-45705444 None:intergenic 20.0%
!!! ATGTAATGTGGTTTTTTTTT+GGG + chr8_3:45705696-45705715 None:intergenic 20.0%
!!! AATGTAATGTGGTTTTTTTT+TGG + chr8_3:45705697-45705716 None:intergenic 20.0%
!! ATTAAAACATCTTATAGCTT+TGG + chr8_3:45707529-45707548 None:intergenic 20.0%
!! AATTAGGAAAATTAGTGATT+CGG - chr8_3:45708024-45708043 Msa1290730:intron 20.0%
!! TACACAAAATTCAATCATTT+AGG + chr8_3:45708113-45708132 None:intergenic 20.0%
!!! ACTTTTATCATAAAGTTTAC+TGG + chr8_3:45708159-45708178 None:intergenic 20.0%
!!! TTAAGATATCTTTTTTTCAG+GGG - chr8_3:45708197-45708216 Msa1290730:intron 20.0%
!! TTCAATATAAATACATCAGA+AGG + chr8_3:45708656-45708675 None:intergenic 20.0%
!!! AGTATTGAGTATATATAGTT+AGG - chr8_3:45709627-45709646 Msa1290730:five_prime_UTR 20.0%
!! TTTAAACAACAATGGTAATT+AGG - chr8_3:45709798-45709817 Msa1290730:five_prime_UTR 20.0%
! TTTGATATATGTTGATCCAA+TGG + chr8_3:45705495-45705514 None:intergenic 25.0%
!! TATCAAAATTTTGGACCTTT+TGG - chr8_3:45705508-45705527 Msa1290730:three_prime_UTR 25.0%
! TTCTTTCTCAACATGAATTA+GGG - chr8_3:45705744-45705763 Msa1290730:CDS 25.0%
! GAGGTGTAAAAAGTAATAAT+GGG + chr8_3:45705797-45705816 None:intergenic 25.0%
! AAATGAAGAACAAGTTGTTA+TGG + chr8_3:45705819-45705838 None:intergenic 25.0%
! ATGGAAGCAAAATAAGAAAT+GGG + chr8_3:45705968-45705987 None:intergenic 25.0%
! AATGGAAGCAAAATAAGAAA+TGG + chr8_3:45705969-45705988 None:intergenic 25.0%
!!! TTTTTGTGTGTTTTTGTTGA+AGG - chr8_3:45706199-45706218 Msa1290730:CDS 25.0%
!!! TTTTGTGTGTTTTTGTTGAA+GGG - chr8_3:45706200-45706219 Msa1290730:CDS 25.0%
! TTTGGAGATTAGATACTTAA+TGG - chr8_3:45706517-45706536 Msa1290730:intron 25.0%
!!! ATACTTAATGGATTATGTTG+TGG - chr8_3:45706529-45706548 Msa1290730:intron 25.0%
! ATACAATGAAGAGATCAAAA+TGG + chr8_3:45706634-45706653 None:intergenic 25.0%
! ATCTCTTCATTGTATCATAT+TGG - chr8_3:45706639-45706658 Msa1290730:CDS 25.0%
!! TATAGAATTTGGGATATGTT+TGG - chr8_3:45706679-45706698 Msa1290730:CDS 25.0%
! GTTCAAAATTAAGTTACTCA+AGG + chr8_3:45706954-45706973 None:intergenic 25.0%
!!! TTCCCCTTACATTTTTTAAA+AGG - chr8_3:45707100-45707119 Msa1290730:intron 25.0%
!!! CTCCTTTTAAAAAATGTAAG+GGG + chr8_3:45707105-45707124 None:intergenic 25.0%
!!! GCTCCTTTTAAAAAATGTAA+GGG + chr8_3:45707106-45707125 None:intergenic 25.0%
!!! AGCTCCTTTTAAAAAATGTA+AGG + chr8_3:45707107-45707126 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr8_3:45707404-45707423 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr8_3:45707405-45707424 None:intergenic 25.0%
! ATTAGGAAAATTAGTGATTC+GGG - chr8_3:45708025-45708044 Msa1290730:intron 25.0%
! AAAACAATATATCACCAAGA+GGG + chr8_3:45708068-45708087 None:intergenic 25.0%
! AAAAACAATATATCACCAAG+AGG + chr8_3:45708069-45708088 None:intergenic 25.0%
! AATCATTTAGGTATTAAGCA+TGG + chr8_3:45708101-45708120 None:intergenic 25.0%
!!! AGATTTTAGTTTTACCAAGA+GGG + chr8_3:45708425-45708444 None:intergenic 25.0%
!!! AAGATTTTAGTTTTACCAAG+AGG + chr8_3:45708426-45708445 None:intergenic 25.0%
! CAATTCATATTATGATCATC+AGG + chr8_3:45709737-45709756 None:intergenic 25.0%
! TTGCCAAATATAGATTTCTA+TGG - chr8_3:45709768-45709787 Msa1290730:five_prime_UTR 25.0%
! AAGCCATAGAAATCTATATT+TGG + chr8_3:45709774-45709793 None:intergenic 25.0%
TTATGTTTAGCATGTGAATC+CGG + chr8_3:45705349-45705368 None:intergenic 30.0%
CTTCTTTCTCAACATGAATT+AGG - chr8_3:45705743-45705762 Msa1290730:CDS 30.0%
! GTGTAAAAAGTAATAATGGG+AGG + chr8_3:45705794-45705813 None:intergenic 30.0%
! GGAGGTGTAAAAAGTAATAA+TGG + chr8_3:45705798-45705817 None:intergenic 30.0%
AAGCAAAATAAGAAATGGGT+TGG + chr8_3:45705964-45705983 None:intergenic 30.0%
! AGATGAGAACTTTGAAGAAA+TGG + chr8_3:45705987-45706006 None:intergenic 30.0%
! TTCATTTCAGAACTTGTTTC+TGG - chr8_3:45706026-45706045 Msa1290730:CDS 30.0%
! TCATTTCAGAACTTGTTTCT+GGG - chr8_3:45706027-45706046 Msa1290730:CDS 30.0%
!!! TGTTCCTGCTTTTTCTAAAT+GGG - chr8_3:45706064-45706083 Msa1290730:CDS 30.0%
!! TTTGTGTGTTTTTGTTGAAG+GGG - chr8_3:45706201-45706220 Msa1290730:CDS 30.0%
TTCATATACCTTGTGATCAT+TGG - chr8_3:45706419-45706438 Msa1290730:intron 30.0%
! ATGGATTATGTTGTGGATAA+TGG - chr8_3:45706536-45706555 Msa1290730:intron 30.0%
AGTGGTGCTTATATAGAATT+TGG - chr8_3:45706668-45706687 Msa1290730:CDS 30.0%
GTGGTGCTTATATAGAATTT+GGG - chr8_3:45706669-45706688 Msa1290730:CDS 30.0%
! AATTTGGGATATGTTTGGAT+TGG - chr8_3:45706684-45706703 Msa1290730:intron 30.0%
TTAAAGTTAGTGAGACTGTT+TGG - chr8_3:45706731-45706750 Msa1290730:intron 30.0%
TAAAGTTAGTGAGACTGTTT+GGG - chr8_3:45706732-45706751 Msa1290730:intron 30.0%
TGCTTAACATTGTTCTTTCA+CGG - chr8_3:45706982-45707001 Msa1290730:CDS 30.0%
TTTCTTATCATGCAACTTGA+TGG - chr8_3:45707051-45707070 Msa1290730:intron 30.0%
!!! CAATGTTTTTAGACGATTCA+TGG - chr8_3:45707133-45707152 Msa1290730:intron 30.0%
AATTAAACAGGAGAAAACGA+CGG + chr8_3:45707219-45707238 None:intergenic 30.0%
TAAGTCGTAGTCAATTAAAC+AGG + chr8_3:45707231-45707250 None:intergenic 30.0%
AATTGACTACGACTTATATG+TGG - chr8_3:45707235-45707254 Msa1290730:CDS 30.0%
GTGACATAATCTTCGATATT+TGG + chr8_3:45707348-45707367 None:intergenic 30.0%
ACTCATAACATGTTTGTAAG+CGG + chr8_3:45707589-45707608 None:intergenic 30.0%
!! TGCATTTTGATATATGTCAG+TGG - chr8_3:45707755-45707774 Msa1290730:intron 30.0%
!! GCATTTTGATATATGTCAGT+GGG - chr8_3:45707756-45707775 Msa1290730:intron 30.0%
!! CATTTTGATATATGTCAGTG+GGG - chr8_3:45707757-45707776 Msa1290730:intron 30.0%
CTGCAACATAAATATTTCCT+CGG + chr8_3:45707988-45708007 None:intergenic 30.0%
ATACTGCAAATATGGCAATT+AGG - chr8_3:45708008-45708027 Msa1290730:intron 30.0%
! GAAAATTTAGCTTCTTCACT+TGG + chr8_3:45708276-45708295 None:intergenic 30.0%
! ATTTTCTGATGACTTTGATG+TGG - chr8_3:45708290-45708309 Msa1290730:intron 30.0%
!! TCTATTTTCTCAAGTATTGC+TGG - chr8_3:45708815-45708834 Msa1290730:intron 30.0%
!! AAACATCTTATGCTTTTTGC+AGG - chr8_3:45708893-45708912 Msa1290730:CDS 30.0%
TATGTAGTTTGAGAAACAGA+AGG + chr8_3:45708942-45708961 None:intergenic 30.0%
TCATATTCTGATGGAATCAA+TGG + chr8_3:45708993-45709012 None:intergenic 30.0%
CAGAAAAAATTCAACAGTTG+CGG - chr8_3:45709297-45709316 Msa1290730:CDS 30.0%
! TTTGCTCATAAAAAGTGTGA+GGG + chr8_3:45709460-45709479 None:intergenic 30.0%
!! GCTTGTTGTTTAAACAACAA+TGG - chr8_3:45709790-45709809 Msa1290730:five_prime_UTR 30.0%
AACAACAATGGTAATTAGGA+AGG - chr8_3:45709802-45709821 Msa1290730:five_prime_UTR 30.0%
GATATATGTTGATCCAATGG+TGG + chr8_3:45705492-45705511 None:intergenic 35.0%
! TTTCTAGAGACTACACCAAA+AGG + chr8_3:45705526-45705545 None:intergenic 35.0%
AGGGAAAGGGAAAAAGATAT+TGG + chr8_3:45705591-45705610 None:intergenic 35.0%
AGAAAAGAGAGGAAAATGAG+TGG + chr8_3:45705665-45705684 None:intergenic 35.0%
TGAAGAACAAGTTGTTATGG+AGG + chr8_3:45705816-45705835 None:intergenic 35.0%
CTCATTCTTCATCTTCTCTT+TGG - chr8_3:45705877-45705896 Msa1290730:CDS 35.0%
!!! CTGTTCCTGCTTTTTCTAAA+TGG - chr8_3:45706063-45706082 Msa1290730:CDS 35.0%
CAAACCCATTTAGAAAAAGC+AGG + chr8_3:45706071-45706090 None:intergenic 35.0%
!!! CTGCTTTTTCTAAATGGGTT+TGG - chr8_3:45706069-45706088 Msa1290730:CDS 35.0%
!!! AGTTTTGGTGGTAGCTTTAA+GGG + chr8_3:45706096-45706115 None:intergenic 35.0%
!! ATATTCCATACCAGTTTTGG+TGG + chr8_3:45706108-45706127 None:intergenic 35.0%
ACCAAAACTGGTATGGAATA+TGG - chr8_3:45706107-45706126 Msa1290730:CDS 35.0%
! TCCATATTCCATACCAGTTT+TGG + chr8_3:45706111-45706130 None:intergenic 35.0%
TCAATGATGAAGTTTGAGAG+TGG - chr8_3:45706235-45706254 Msa1290730:CDS 35.0%
AATGTGGAAACTGTGTTTGA+TGG - chr8_3:45706262-45706281 Msa1290730:CDS 35.0%
! CTGTTGAGGTTTTGCATAAT+GGG - chr8_3:45706311-45706330 Msa1290730:intron 35.0%
! TGTTGAGGTTTTGCATAATG+GGG - chr8_3:45706312-45706331 Msa1290730:intron 35.0%
GTGATGAAGAGATTCTGTAA+AGG + chr8_3:45706369-45706388 None:intergenic 35.0%
GAATTAAGCCAATGATCACA+AGG + chr8_3:45706430-45706449 None:intergenic 35.0%
! GATTATGTTGTGGATAATGG+TGG - chr8_3:45706539-45706558 Msa1290730:intron 35.0%
!! ACTTGATGGTTTTCTTTGCT+TGG - chr8_3:45707065-45707084 Msa1290730:intron 35.0%
!! CTTGATGGTTTTCTTTGCTT+GGG - chr8_3:45707066-45707085 Msa1290730:intron 35.0%
AAGTTCATTACTGTCTGAGA+TGG - chr8_3:45707186-45707205 Msa1290730:intron 35.0%
TTCCAAATCTTTGATGCAAG+AGG + chr8_3:45707301-45707320 None:intergenic 35.0%
TTCATGATTATGACCCTGTT+TGG - chr8_3:45707388-45707407 Msa1290730:intron 35.0%
CTTATTTCCATAAGCTCTCT+AGG + chr8_3:45707559-45707578 None:intergenic 35.0%
TACATCTTCATCAAGGTCAT+AGG + chr8_3:45707716-45707735 None:intergenic 35.0%
AATGCGATACATCTTCATCA+AGG + chr8_3:45707723-45707742 None:intergenic 35.0%
GAATGAAGTATACACATGCA+AGG + chr8_3:45707821-45707840 None:intergenic 35.0%
GATATTCTGGACATGTTGAT+GGG - chr8_3:45707912-45707931 Msa1290730:intron 35.0%
TGTTGCAGATACTGCAAATA+TGG - chr8_3:45708000-45708019 Msa1290730:intron 35.0%
GACTTTGATGTGGTTTATGT+TGG - chr8_3:45708300-45708319 Msa1290730:intron 35.0%
GATATGCACAATCATCAAAG+TGG + chr8_3:45708386-45708405 None:intergenic 35.0%
GATGATTGTGCATATCGATA+TGG - chr8_3:45708390-45708409 Msa1290730:intron 35.0%
TGGTTTCTTTGGTTATATGC+TGG - chr8_3:45708562-45708581 Msa1290730:intron 35.0%
AAAAGCCCTTGAAATCTGTA+AGG - chr8_3:45708964-45708983 Msa1290730:CDS 35.0%
TATTCTGATGGAATCAATGG+AGG + chr8_3:45708990-45709009 None:intergenic 35.0%
!!! TTTTCGGGTTCATATTCTGA+TGG + chr8_3:45709002-45709021 None:intergenic 35.0%
!! AAACTTTCTTCCTGCTTTTC+GGG + chr8_3:45709017-45709036 None:intergenic 35.0%
!! GAAACTTTCTTCCTGCTTTT+CGG + chr8_3:45709018-45709037 None:intergenic 35.0%
AAGCAGGAAGAAAGTTTCTT+TGG - chr8_3:45709020-45709039 Msa1290730:intron 35.0%
GAAAGTTTCTTTGGATCTCT+TGG - chr8_3:45709029-45709048 Msa1290730:intron 35.0%
!! TCAGTGTTTGCCTTTGAAAT+TGG + chr8_3:45709142-45709161 None:intergenic 35.0%
!! TGAAAGGATAGGTTTTTCGA+GGG + chr8_3:45709265-45709284 None:intergenic 35.0%
! ATGAAAGGATAGGTTTTTCG+AGG + chr8_3:45709266-45709285 None:intergenic 35.0%
ATCTTTCGACATGAAAGGAT+AGG + chr8_3:45709276-45709295 None:intergenic 35.0%
! CAAAGTAAAGCATTCTACAG+CGG - chr8_3:45709320-45709339 Msa1290730:CDS 35.0%
! AAAGTAAAGCATTCTACAGC+GGG - chr8_3:45709321-45709340 Msa1290730:CDS 35.0%
! CTTTGCTCATAAAAAGTGTG+AGG + chr8_3:45709461-45709480 None:intergenic 35.0%
! ACAACCAATGAGGTAGTTTT+TGG - chr8_3:45709488-45709507 Msa1290730:five_prime_UTR 35.0%
! CAACCAATGAGGTAGTTTTT+GGG - chr8_3:45709489-45709508 Msa1290730:five_prime_UTR 35.0%
! AACCAATGAGGTAGTTTTTG+GGG - chr8_3:45709490-45709509 Msa1290730:five_prime_UTR 35.0%
!! AATCCAGCTTTGATTTGGAA+TGG - chr8_3:45709673-45709692 Msa1290730:five_prime_UTR 35.0%
!! ATCCAGCTTTGATTTGGAAT+GGG - chr8_3:45709674-45709693 Msa1290730:five_prime_UTR 35.0%
AACAATGGTAATTAGGAAGG+TGG - chr8_3:45709805-45709824 Msa1290730:five_prime_UTR 35.0%
ACAATGGTAATTAGGAAGGT+GGG - chr8_3:45709806-45709825 Msa1290730:five_prime_UTR 35.0%
!! ATGGTGGATAACAATTCTGG+TGG + chr8_3:45705476-45705495 None:intergenic 40.0%
!! CCAATGGTGGATAACAATTC+TGG + chr8_3:45705479-45705498 None:intergenic 40.0%
CCAGAATTGTTATCCACCAT+TGG - chr8_3:45705476-45705495 Msa1290730:three_prime_UTR 40.0%
ACAAGAGAGTGACTACTAGT+GGG + chr8_3:45705557-45705576 None:intergenic 40.0%
GTGAAAGGTTAAGAGAGAGA+GGG + chr8_3:45705610-45705629 None:intergenic 40.0%
TGTGAAAGGTTAAGAGAGAG+AGG + chr8_3:45705611-45705630 None:intergenic 40.0%
AGAAAAAGCAGGAACAGCAT+TGG + chr8_3:45706060-45706079 None:intergenic 40.0%
!! CAGTTTTGGTGGTAGCTTTA+AGG + chr8_3:45706097-45706116 None:intergenic 40.0%
CTTAAAGCTACCACCAAAAC+TGG - chr8_3:45706095-45706114 Msa1290730:CDS 40.0%
GTTTGAGAGTGGTTACAATG+TGG - chr8_3:45706246-45706265 Msa1290730:CDS 40.0%
GTGTTTGATGGAAGTAAGCT+TGG - chr8_3:45706274-45706293 Msa1290730:CDS 40.0%
! AATTGAGCCTTATGCTGTTG+AGG - chr8_3:45706297-45706316 Msa1290730:CDS 40.0%
TGCAAAACCTCAACAGCATA+AGG + chr8_3:45706307-45706326 None:intergenic 40.0%
! GCTGTTGAGGTTTTGCATAA+TGG - chr8_3:45706310-45706329 Msa1290730:intron 40.0%
! ATGTTGTGGATAATGGTGGT+TGG - chr8_3:45706543-45706562 Msa1290730:intron 40.0%
! TGTTGTGGATAATGGTGGTT+GGG - chr8_3:45706544-45706563 Msa1290730:intron 40.0%
!!! GGGATGCTTTTTTCCGAATT+TGG - chr8_3:45706564-45706583 Msa1290730:intron 40.0%
!!! AATGCCGATGAGCTAGTTTT+GGG - chr8_3:45706587-45706606 Msa1290730:intron 40.0%
! GTATCATATTGGCTAGTCAG+TGG - chr8_3:45706650-45706669 Msa1290730:CDS 40.0%
AAGTTACTCAAGGCTCTGTT+TGG + chr8_3:45706944-45706963 None:intergenic 40.0%
AAAATGTAAGGGGAATGCCA+CGG + chr8_3:45707095-45707114 None:intergenic 40.0%
!! GTTTTTAGACGATTCATGGC+TGG - chr8_3:45707137-45707156 Msa1290730:intron 40.0%
CTCCTCTTGCATCAAAGATT+TGG - chr8_3:45707296-45707315 Msa1290730:CDS 40.0%
!! TTCCATAAGCTCTCTAGGAT+AGG + chr8_3:45707554-45707573 None:intergenic 40.0%
TGCAAGGACATAAACTGTCA+CGG + chr8_3:45707805-45707824 None:intergenic 40.0%
GGATATTCTGGACATGTTGA+TGG - chr8_3:45707911-45707930 Msa1290730:intron 40.0%
TCATCAACAGTTATCCCCTT+TGG + chr8_3:45707965-45707984 None:intergenic 40.0%
! TTTTCTTCATCCTTCCCTCT+TGG - chr8_3:45708051-45708070 Msa1290730:intron 40.0%
CAATATATCACCAAGAGGGA+AGG + chr8_3:45708064-45708083 None:intergenic 40.0%
CAACAATTGCTGGAGGAAAA+TGG - chr8_3:45708223-45708242 Msa1290730:intron 40.0%
CACAATCATCAAAGTGGAGT+TGG + chr8_3:45708380-45708399 None:intergenic 40.0%
GATTTATTTCCTTCGTTCGC+AGG - chr8_3:45708518-45708537 Msa1290730:intron 40.0%
CAGGAATTGCAATGCTTGTT+GGG - chr8_3:45708537-45708556 Msa1290730:intron 40.0%
! AGGAATTGCAATGCTTGTTG+GGG - chr8_3:45708538-45708557 Msa1290730:intron 40.0%
CGGTACAATTGTAGAATCTC+AGG - chr8_3:45708604-45708623 Msa1290730:intron 40.0%
ACATCAGAAGGAAGAAGACA+AGG + chr8_3:45708644-45708663 None:intergenic 40.0%
TGTCAAACACCGATAGATGT+CGG + chr8_3:45708770-45708789 None:intergenic 40.0%
! TTCTCAAGTATTGCTGGTGT+TGG - chr8_3:45708821-45708840 Msa1290730:intron 40.0%
!! ACTTTGATAAGCACTGACAC+AGG + chr8_3:45708869-45708888 None:intergenic 40.0%
!! ACAGAAGGCATTACTGTTAG+TGG + chr8_3:45708927-45708946 None:intergenic 40.0%
AGAATATGAACCCGAAAAGC+AGG - chr8_3:45709004-45709023 Msa1290730:intron 40.0%
! TCGTCAATGGTGGAGATAAT+GGG - chr8_3:45709074-45709093 Msa1290730:intron 40.0%
! TGTGGTCTTCTTCTGAAAAC+AGG + chr8_3:45709110-45709129 None:intergenic 40.0%
AGAGCTACCACCAATTTCAA+AGG - chr8_3:45709129-45709148 Msa1290730:CDS 40.0%
!! GTGTTTGCCTTTGAAATTGG+TGG + chr8_3:45709139-45709158 None:intergenic 40.0%
!! TCACTTGCTTCTGAGATTGT+TGG + chr8_3:45709166-45709185 None:intergenic 40.0%
CTCAGAAGCAAGTGAATGAT+TGG - chr8_3:45709171-45709190 Msa1290730:CDS 40.0%
!!! GAAAGGATAGGTTTTTCGAG+GGG + chr8_3:45709264-45709283 None:intergenic 40.0%
TCTGCATCTTTCGACATGAA+AGG + chr8_3:45709281-45709300 None:intergenic 40.0%
! TGTTGTTGTTGATGTGGTTG+CGG + chr8_3:45709380-45709399 None:intergenic 40.0%
!!! TGTTTTTGTTGTTGCTGCTG+CGG + chr8_3:45709407-45709426 None:intergenic 40.0%
AAGCAATGAGACAACCAATG+AGG - chr8_3:45709478-45709497 Msa1290730:five_prime_UTR 40.0%
GTCATCACACCTGTTGAATA+TGG - chr8_3:45709548-45709567 Msa1290730:five_prime_UTR 40.0%
ATCACACCTGTTGAATATGG+AGG - chr8_3:45709551-45709570 Msa1290730:five_prime_UTR 40.0%
AATGAGCCTCCATATTCAAC+AGG + chr8_3:45709560-45709579 None:intergenic 40.0%
! TGTACGAACATCGCGATTTT+CGG - chr8_3:45709579-45709598 Msa1290730:five_prime_UTR 40.0%
! GACTCAATCCAGCTTTGATT+TGG - chr8_3:45709668-45709687 Msa1290730:five_prime_UTR 40.0%
!! TCCAGCTTTGATTTGGAATG+GGG - chr8_3:45709675-45709694 Msa1290730:five_prime_UTR 40.0%
GGGAGGATGAAATCAAATGT+AGG - chr8_3:45709695-45709714 Msa1290730:five_prime_UTR 40.0%
GTTTAGCATGTGAATCCGGT+TGG + chr8_3:45705345-45705364 None:intergenic 45.0%
CAAGAGAGTGACTACTAGTG+GGG + chr8_3:45705556-45705575 None:intergenic 45.0%
GACAAGAGAGTGACTACTAG+TGG + chr8_3:45705558-45705577 None:intergenic 45.0%
GGTTAAGAGAGAGAGGGAAA+GGG + chr8_3:45705604-45705623 None:intergenic 45.0%
AGGTTAAGAGAGAGAGGGAA+AGG + chr8_3:45705605-45705624 None:intergenic 45.0%
! GTGAGTGAGAAGAGTGTGAA+AGG + chr8_3:45705625-45705644 None:intergenic 45.0%
GGGTTCTTAGCAGAAAAGAG+AGG + chr8_3:45705676-45705695 None:intergenic 45.0%
GTACTTACTTGCAGGTGAAG+TGG + chr8_3:45705938-45705957 None:intergenic 45.0%
! GTTGGTGAGTACTTACTTGC+AGG + chr8_3:45705946-45705965 None:intergenic 45.0%
AGCTACCACCAAAACTGGTA+TGG - chr8_3:45706100-45706119 Msa1290730:CDS 45.0%
GCTCATCGGCATTCCAAATT+CGG + chr8_3:45706580-45706599 None:intergenic 45.0%
!! GAATGCCGATGAGCTAGTTT+TGG - chr8_3:45706586-45706605 Msa1290730:intron 45.0%
CACACCCAAAACTAGCTCAT+CGG + chr8_3:45706594-45706613 None:intergenic 45.0%
AAACAGGAGAAAACGACGGT+AGG + chr8_3:45707215-45707234 None:intergenic 45.0%
GGAGTTGAACTGGGAAAAAG+TGG + chr8_3:45707280-45707299 None:intergenic 45.0%
GATGCAAGAGGAGTTGAACT+GGG + chr8_3:45707289-45707308 None:intergenic 45.0%
TGATGCAAGAGGAGTTGAAC+TGG + chr8_3:45707290-45707309 None:intergenic 45.0%
GACCTATCCTAGAGAGCTTA+TGG - chr8_3:45707549-45707568 Msa1290730:intron 45.0%
GGATCAGCTGAAGGATATTC+TGG - chr8_3:45707899-45707918 Msa1290730:intron 45.0%
! ATTCTGGACATGTTGATGGG+AGG - chr8_3:45707915-45707934 Msa1290730:intron 45.0%
GCTAGGATGAACCATCCAAA+GGG - chr8_3:45707947-45707966 Msa1290730:intron 45.0%
CTAGGATGAACCATCCAAAG+GGG - chr8_3:45707948-45707967 Msa1290730:intron 45.0%
CAACAGTTATCCCCTTTGGA+TGG + chr8_3:45707961-45707980 None:intergenic 45.0%
TCCTCTGTCTACAACAAGCA+GGG + chr8_3:45708337-45708356 None:intergenic 45.0%
TTCCTCTGTCTACAACAAGC+AGG + chr8_3:45708338-45708357 None:intergenic 45.0%
ACAGAGGAAACCAAGCCATT+AGG - chr8_3:45708349-45708368 Msa1290730:intron 45.0%
CAGAGGAAACCAAGCCATTA+GGG - chr8_3:45708350-45708369 Msa1290730:intron 45.0%
TATGGCAGTGATTTCCCTCT+TGG - chr8_3:45708408-45708427 Msa1290730:intron 45.0%
ATTGCAATTCCTGCGAACGA+AGG + chr8_3:45708530-45708549 None:intergenic 45.0%
GCAGGAATTGCAATGCTTGT+TGG - chr8_3:45708536-45708555 Msa1290730:intron 45.0%
CTTCAAATTGAAGACGTGCC+CGG - chr8_3:45708741-45708760 Msa1290730:intron 45.0%
!! CTTATGCTTTTTGCAGGCTC+AGG - chr8_3:45708899-45708918 Msa1290730:CDS 45.0%
GGAGGCCTTACAGATTTCAA+GGG + chr8_3:45708972-45708991 None:intergenic 45.0%
TGGAGGCCTTACAGATTTCA+AGG + chr8_3:45708973-45708992 None:intergenic 45.0%
! CTCGTCAATGGTGGAGATAA+TGG - chr8_3:45709073-45709092 Msa1290730:intron 45.0%
!! TCAATGGTGGAGATAATGGG+AGG - chr8_3:45709077-45709096 Msa1290730:intron 45.0%
! TGAAATTGGTGGTAGCTCTG+TGG + chr8_3:45709128-45709147 None:intergenic 45.0%
ATCACGAAACTTTCCTGTGC+TGG + chr8_3:45709197-45709216 None:intergenic 45.0%
AACCACCATCTATCGACACA+AGG - chr8_3:45709231-45709250 Msa1290730:intron 45.0%
ACCACCATCTATCGACACAA+GGG - chr8_3:45709232-45709251 Msa1290730:intron 45.0%
! TAAAGCATTCTACAGCGGGT+GGG - chr8_3:45709325-45709344 Msa1290730:CDS 45.0%
TGCCCCAAAAACTACCTCAT+TGG + chr8_3:45709495-45709514 None:intergenic 45.0%
TCGGTCTCGAATGAGTTACA+TGG - chr8_3:45709598-45709617 Msa1290730:five_prime_UTR 45.0%
CGGTCTCGAATGAGTTACAT+GGG - chr8_3:45709599-45709618 Msa1290730:five_prime_UTR 45.0%
TCCCCATTCCAAATCAAAGC+TGG + chr8_3:45709679-45709698 None:intergenic 45.0%
!! AGCTTTGATTTGGAATGGGG+AGG - chr8_3:45709678-45709697 Msa1290730:five_prime_UTR 45.0%
!! AAAAAAAAACAAAAAAAAAA+TGG + chr8_3:45706157-45706176 None:intergenic 5.0%
CTTGCAGGTGAAGTGGTTGA+TGG + chr8_3:45705931-45705950 None:intergenic 50.0%
!!! CGATGAGCTAGTTTTGGGTG+TGG - chr8_3:45706592-45706611 Msa1290730:intron 50.0%
!!! AGCTAGTTTTGGGTGTGGTG+TGG - chr8_3:45706597-45706616 Msa1290730:intron 50.0%
! TTTCTTTGCTTGGGTTGCCG+TGG - chr8_3:45707075-45707094 Msa1290730:intron 50.0%
! AGACGATTCATGGCTGGTCA+TGG - chr8_3:45707143-45707162 Msa1290730:intron 50.0%
! ACATGTTGATGGGAGGCTCA+GGG - chr8_3:45707922-45707941 Msa1290730:intron 50.0%
GGCTAGGATGAACCATCCAA+AGG - chr8_3:45707946-45707965 Msa1290730:intron 50.0%
!! GGGATAACTGTTGATGACCG+AGG - chr8_3:45707968-45707987 Msa1290730:intron 50.0%
TCAGGGGTCACAACAATTGC+TGG - chr8_3:45708213-45708232 Msa1290730:intron 50.0%
CTTCACTTGGTCCATCAACG+TGG + chr8_3:45708263-45708282 None:intergenic 50.0%
!! TCCCTGCTTGTTGTAGACAG+AGG - chr8_3:45708333-45708352 Msa1290730:intron 50.0%
GTTGGATCTCCCTAATGGCT+TGG + chr8_3:45708362-45708381 None:intergenic 50.0%
GTGGAGTTGGATCTCCCTAA+TGG + chr8_3:45708367-45708386 None:intergenic 50.0%
! ATTGCAATGCTTGTTGGGGC+TGG - chr8_3:45708542-45708561 Msa1290730:intron 50.0%
!! CTTGTTGGGGCTGGTTTCTT+TGG - chr8_3:45708551-45708570 Msa1290730:intron 50.0%
!! ATAAGCACTGACACAGGCAC+CGG + chr8_3:45708863-45708882 None:intergenic 50.0%
GGTAAGCTTCTTGCGAATGC+TGG - chr8_3:45709050-45709069 Msa1290730:intron 50.0%
! AGTGAATGATTGGCCAGCAC+AGG - chr8_3:45709181-45709200 Msa1290730:CDS 50.0%
!!! GGATAGGTTTTTCGAGGGGT+TGG + chr8_3:45709260-45709279 None:intergenic 50.0%
! GTAAAGCATTCTACAGCGGG+TGG - chr8_3:45709324-45709343 Msa1290730:CDS 50.0%
! GGCTGCTGTTGTTGTTGATG+TGG + chr8_3:45709386-45709405 None:intergenic 50.0%
TCGCCATCAGTACCAATCGT+CGG - chr8_3:45709433-45709452 Msa1290730:five_prime_UTR 50.0%
TGCAGATAGCAGACCGAAGC+TGG - chr8_3:45707871-45707890 Msa1290730:intron 55.0%
AGATAGCAGACCGAAGCTGG+TGG - chr8_3:45707874-45707893 Msa1290730:intron 55.0%
! GACATGTTGATGGGAGGCTC+AGG - chr8_3:45707921-45707940 Msa1290730:intron 55.0%
GGGGTCACAACAATTGCTGG+AGG - chr8_3:45708216-45708235 Msa1290730:intron 55.0%
GAGGAAAATGGAGCCGTGGA+GGG - chr8_3:45708235-45708254 Msa1290730:intron 55.0%
AGGAAAATGGAGCCGTGGAG+GGG - chr8_3:45708236-45708255 Msa1290730:intron 55.0%
ACCGATAGATGTCGGACACC+GGG + chr8_3:45708762-45708781 None:intergenic 55.0%
CACCGATAGATGTCGGACAC+CGG + chr8_3:45708763-45708782 None:intergenic 55.0%
!! TAAGCACTGACACAGGCACC+GGG + chr8_3:45708862-45708881 None:intergenic 55.0%
!! TGCGAATGCTGGCTCGTCAA+TGG - chr8_3:45709061-45709080 Msa1290730:intron 55.0%
!! GAATGCTGGCTCGTCAATGG+TGG - chr8_3:45709064-45709083 Msa1290730:intron 55.0%
! GCCCTTGTGTCGATAGATGG+TGG + chr8_3:45709236-45709255 None:intergenic 55.0%
! GGTGCCCTTGTGTCGATAGA+TGG + chr8_3:45709239-45709258 None:intergenic 55.0%
! GGACCGACGATTGGTACTGA+TGG + chr8_3:45709439-45709458 None:intergenic 55.0%
AAGTGTGAGGGACCGACGAT+TGG + chr8_3:45709448-45709467 None:intergenic 55.0%
!!! GGTAGTTTTTGGGGCAGTGC+AGG - chr8_3:45709499-45709518 Msa1290730:five_prime_UTR 55.0%
!!! TTTTGGGGCAGTGCAGGAAC+AGG - chr8_3:45709505-45709524 Msa1290730:five_prime_UTR 55.0%
GGAGGGGAAGAAGGAATCTG+TGG - chr8_3:45709526-45709545 Msa1290730:five_prime_UTR 55.0%
GCTGATCCAGCCACCAGCTT+CGG + chr8_3:45707887-45707906 None:intergenic 60.0%
CTGGTGGCTGGATCAGCTGA+AGG - chr8_3:45707890-45707909 Msa1290730:intron 60.0%
! TGTTGATGGGAGGCTCAGGG+AGG - chr8_3:45707925-45707944 Msa1290730:intron 60.0%
GCTGGAGGAAAATGGAGCCG+TGG - chr8_3:45708231-45708250 Msa1290730:intron 60.0%
GGAGGAAAATGGAGCCGTGG+AGG - chr8_3:45708234-45708253 Msa1290730:intron 60.0%
GGAAAATGGAGCCGTGGAGG+GGG - chr8_3:45708237-45708256 Msa1290730:intron 60.0%
TGCTGGCATTGCTGCAGCGT+AGG - chr8_3:45708579-45708598 Msa1290730:intron 60.0%
GCATTGCTGCAGCGTAGGCT+CGG - chr8_3:45708584-45708603 Msa1290730:intron 60.0%
GCCCGGTGTCCGACATCTAT+CGG - chr8_3:45708758-45708777 Msa1290730:intron 60.0%
TGGCGTGTCAGTGTCATGCC+CGG - chr8_3:45708841-45708860 Msa1290730:intron 60.0%
! GATGGTGGTTCGTCTTCGCG+AGG + chr8_3:45709221-45709240 None:intergenic 60.0%
GCATTCTACAGCGGGTGGGA+TGG - chr8_3:45709329-45709348 Msa1290730:CDS 60.0%
GCAGGAACAGGAGGGGAAGA+AGG - chr8_3:45709517-45709536 Msa1290730:five_prime_UTR 60.0%
AGCAGACCGAAGCTGGTGGC+TGG - chr8_3:45707878-45707897 Msa1290730:intron 65.0%
ATGGGAGGCTCAGGGAGGCT+AGG - chr8_3:45707930-45707949 Msa1290730:intron 65.0%
CATCAACGTGGCCCCCTCCA+CGG + chr8_3:45708251-45708270 None:intergenic 65.0%
TGGGGCAGTGCAGGAACAGG+AGG - chr8_3:45709508-45709527 Msa1290730:five_prime_UTR 65.0%
GGGGCAGTGCAGGAACAGGA+GGG - chr8_3:45709509-45709528 Msa1290730:five_prime_UTR 65.0%
GGGCAGTGCAGGAACAGGAG+GGG - chr8_3:45709510-45709529 Msa1290730:five_prime_UTR 65.0%
CGTGGAGGGGGCCACGTTGA+TGG - chr8_3:45708249-45708268 Msa1290730:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 45705337 45709903 45705337 ID=Msa1290730;Name=Msa1290730
chr8_3 mRNA 45705337 45709903 45705337 ID=Msa1290730-mRNA-1;Parent=Msa1290730;Name=Msa1290730-mRNA-1;_AED=0.04;_eAED=0.04;_QI=513|1|1|1|1|1|7|269|516
chr8_3 exon 45705337 45706325 45705337 ID=Msa1290730-mRNA-1:exon:12662;Parent=Msa1290730-mRNA-1
chr8_3 exon 45706612 45706700 45706612 ID=Msa1290730-mRNA-1:exon:12661;Parent=Msa1290730-mRNA-1
chr8_3 exon 45706811 45707023 45706811 ID=Msa1290730-mRNA-1:exon:12660;Parent=Msa1290730-mRNA-1
chr8_3 exon 45707194 45707364 45707194 ID=Msa1290730-mRNA-1:exon:12659;Parent=Msa1290730-mRNA-1
chr8_3 exon 45708843 45709019 45708843 ID=Msa1290730-mRNA-1:exon:12658;Parent=Msa1290730-mRNA-1
chr8_3 exon 45709124 45709204 45709124 ID=Msa1290730-mRNA-1:exon:12657;Parent=Msa1290730-mRNA-1
chr8_3 exon 45709291 45709903 45709291 ID=Msa1290730-mRNA-1:exon:12656;Parent=Msa1290730-mRNA-1
chr8_3 five_prime_UTR 45709391 45709903 45709391 ID=Msa1290730-mRNA-1:five_prime_utr;Parent=Msa1290730-mRNA-1
chr8_3 CDS 45709291 45709390 45709291 ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3 CDS 45709124 45709204 45709124 ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3 CDS 45708843 45709019 45708843 ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3 CDS 45707194 45707364 45707194 ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3 CDS 45706811 45707023 45706811 ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3 CDS 45706612 45706700 45706612 ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3 CDS 45705606 45706325 45705606 ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3 three_prime_UTR 45705337 45705605 45705337 ID=Msa1290730-mRNA-1:three_prime_utr;Parent=Msa1290730-mRNA-1
Gene Sequence

>Msa1290730

ATGAGTAAGCAAATTTTGCTACTAGCTCTCATTCTTCATCTTCTCTTTGGAACATTCTTAGTTTCAGTTTCAGCTGCACCATCAACCACTTCACCTGCAAAACTTGTTTCTGGGTTTCTCTCCAATGCTGTTCCTGCTTTTTCTAAATGGGTTTGGTCCCTTAAAGCTACCACCAAAACTGGGGTTTTGAGCAAATCAATGATGAAGTTTGAGAGTGGTTACAATGTGGAAACTGTGTTTGATGGAAGTAAGCTTGGAATTGAGCCTTATGCTGTTGAGGTTTTGCATAATGGGGAGCTTCTTATTCTTGATTCTGCTAATAGTAACCTTTACAGAATCTCTTCATCACTCTCTTTGTATAGCAGACCGAAGCTGGTGGCTGGATCAGCTGAAGGATATTCTGGACATGTTGATGGGAGGCTCAGGGAGGCTAGGATGAACCATCCAAAGGGGATAACTGTTGATGACCGAGGAAATATTTATGTTGCAGATACTGCAAATATGGCAATTAGGAAAATTAGTGATTCGGGGGTCACAACAATTGCTGGAGGAAAATGGAGCCGTGGAGGGGGCCACGTTGATGGACCAAGTGAAGAAGCTAAATTTTCTGATGACTTTGATGTGGTTTATGTTGGAAGTAGTTGTTCCCTGCTTGTTGTAGACAGAGGAAACCAAGCCATTAGGGAGATCCAACTCCACTTTGATGATTGTGCATATCGATATGGCAGTGATTTCCCTCTTGGAATTGCAATGCTTGTTGGGGCTGGTTTCTTTGGTTATATGCTGGCATTGCTGCAGCGTAGGCTCGGTACAATTGTAGAATCTCAGGATGCTCAGGTTCCACTAACAGTAATGCCTTCTGTTTCTCAAACTACATATCAAAAGCCCTTGAAATCTGTAAGGCCTCCATTGATTCCATCAGAATATGAACCCGAAAAGCAGGAAGAAAGTTTCTTTGGATCTCTTGGTAAGCTTCTTGCGAATGCTGGCTCGTCAATGGTGGAGATAATGGGAGGATTATTTCCTGTTTTCAGAAGAAGACCACAGAGCTACCACCAATTTCAAAGGCAAACACTGATCCAACAATCTCAGAAGCAAGTGAATGATTGGCCAGCACAGGAAAGTTTCGTGATTCCTCGCGAAGACGAACCACCATCTATCGACACAAGGGCACCAACCCCTCGAAAAACCTATCCTTTCATGTCGAAAGATGCAGAAAAAATTCAACAGTTGCGGCAAAGTAAAGCATTCTACAGCGGGTGGGATGGAGATCAACATCAGCAACAACAACAACCGCAACCACATCAACAACAACAGCAGCCGCAGCAGCAACAACAAAAACATCATTATCGCCATCAGTACCAATCGTCGGTCCCTCACACTTTTTATGAGCAAAGCAATGAGACAACCAATGAGGTAGTTTTTGGGGCAGTGCAGGAACAGGAGGGGAAGAAGGAATCTGTGGTCATCACACCTGTTGAATATGGAGGCTCATTGTACGAACATCGCGATTTTCGGTCTCGAATGAGTTACATGGGTTATAAGTATTGA
Protein sequence

>Msa1290730

MSKQILLLALILHLLFGTFLVSVSAAPSTTSPAKLVSGFLSNAVPAFSKWVWSLKATTKTGVLSKSMMKFESGYNVETVFDGSKLGIEPYAVEVLHNGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGRLREARMNHPKGITVDDRGNIYVADTANMAIRKISDSGVTTIAGGKWSRGGGHVDGPSEEAKFSDDFDVVYVGSSCSLLVVDRGNQAIREIQLHFDDCAYRYGSDFPLGIAMLVGAGFFGYMLALLQRRLGTIVESQDAQVPLTVMPSVSQTTYQKPLKSVRPPLIPSEYEPEKQEESFFGSLGKLLANAGSSMVEIMGGLFPVFRRRPQSYHQFQRQTLIQQSQKQVNDWPAQESFVIPREDEPPSIDTRAPTPRKTYPFMSKDAEKIQQLRQSKAFYSGWDGDQHQQQQQPQPHQQQQQPQQQQQKHHYRHQYQSSVPHTFYEQSNETTNEVVFGAVQEQEGKKESVVITPVEYGGSLYEHRDFRSRMSYMGYKY*