AlfalfaGEDB | Msa1290730

M. sativa cultivar zhongmu-4 / Msa1290730

KEGG: -
GO: -
PFAM: PF01436.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1290730	XP_013445926.1	97.697	521	7	2	1	516	1	521	0.0	1044

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1290730	A0A072TSZ3	97.697	521	7	2	1	516	1	521	0.0	1044

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0051920	Msa1290730	0.812559	3.988100e-51	-8.615850e-47
Msa0125870	Msa1290730	0.800923	1.147769e-48	-8.615850e-47
Msa0483910	Msa1290730	0.820731	5.875063e-53	-8.615850e-47
Msa0687460	Msa1290730	0.805547	1.266177e-49	-8.615850e-47
Msa1003740	Msa1290730	0.838192	3.327687e-57	-8.615850e-47
Msa1003800	Msa1290730	0.823817	1.129484e-53	-8.615850e-47
Msa1003930	Msa1290730	0.833467	5.244436e-56	-8.615850e-47
Msa1216090	Msa1290730	0.812501	4.106605e-51	-8.615850e-47
Msa1216340	Msa1290730	0.801136	1.038053e-48	-8.615850e-47
Msa1290730	Msa1290770	0.954411	3.141402e-112	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1290730	MtrunA17_Chr8g0364941	97.697	521	7	2	1	516	1	521	0.0	1044
Msa1290730	MtrunA17_Chr5g0413801	67.332	551	116	10	22	516	18	560	0.0	676
Msa1290730	MtrunA17_Chr6g0451131	48.785	576	219	13	1	516	1	560	3.66e-169	489
Msa1290730	MtrunA17_Chr2g0315511	40.979	388	190	9	14	394	10	365	7.33e-79	255
Msa1290730	MtrunA17_Chr8g0359721	58.170	153	63	1	119	271	24	175	1.72e-52	176
Msa1290730	MtrunA17_Chr8g0364901	38.916	203	113	6	71	267	31	228	1.61e-33	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1290730	AT1G70280.2	65.236	466	142	5	24	485	20	469	0.0	565
Msa1290730	AT1G23880.1	61.237	485	161	8	1	482	61	521	0.0	559
Msa1290730	AT1G70280.1	66.430	423	122	5	67	485	1	407	0.0	524
Msa1290730	AT1G23880.2	62.830	417	134	5	67	482	1	397	6.21e-174	497
Msa1290730	AT5G14890.1	47.937	509	199	14	20	514	21	477	3.96e-142	418
Msa1290730	AT3G14860.2	41.499	347	172	8	52	394	55	374	1.15e-74	244
Msa1290730	AT3G14860.1	40.922	347	173	7	52	394	55	373	1.22e-74	244
Msa1290730	AT1G23890.1	48.023	177	87	4	63	237	18	191	1.82e-42	152
Msa1290730	AT1G23890.2	49.412	170	81	4	70	237	25	191	1.64e-41	154

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Find 161 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCCTTGAAATCTGTA+AGG	0.509266	8_3:-45706254	Msa1290730:CDS
AAAGTAAAGCATTCTACAGC+GGG	0.550622	8_3:-45705897	Msa1290730:CDS
AAATGAAGAACAAGTTGTTA+TGG	0.413482	8_3:+45709402	None:intergenic
AACAACAATGGTAATTAGGA+AGG	0.530711	8_3:-45705416	Msa1290730:three_prime_UTR
AACAATGGTAATTAGGAAGG+TGG	0.551782	8_3:-45705413	Msa1290730:three_prime_UTR
AACCACCATCTATCGACACA+AGG	0.640539	8_3:-45705987	Msa1290730:CDS
AAGCAATGAGACAACCAATG+AGG	0.687276	8_3:-45705740	Msa1290730:CDS
AAGCAGGAAGAAAGTTTCTT+TGG	0.273520	8_3:-45706198	Msa1290730:CDS
AAGCCATAGAAATCTATATT+TGG	0.290099	8_3:+45705447	None:intergenic
AAGTGTGAGGGACCGACGAT+TGG	0.581409	8_3:+45705773	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATGTTTAGCATGTGAATC+CGG	+	chr8_3:45705349-45705368	None:intergenic	30.0%
CTTCTTTCTCAACATGAATT+AGG	-	chr8_3:45705743-45705762	Msa1290730:CDS	30.0%
AAGCAAAATAAGAAATGGGT+TGG	+	chr8_3:45705964-45705983	None:intergenic	30.0%
TTCATATACCTTGTGATCAT+TGG	-	chr8_3:45706419-45706438	Msa1290730:intron	30.0%
AGTGGTGCTTATATAGAATT+TGG	-	chr8_3:45706668-45706687	Msa1290730:CDS	30.0%
GTGGTGCTTATATAGAATTT+GGG	-	chr8_3:45706669-45706688	Msa1290730:CDS	30.0%
TTAAAGTTAGTGAGACTGTT+TGG	-	chr8_3:45706731-45706750	Msa1290730:intron	30.0%
TAAAGTTAGTGAGACTGTTT+GGG	-	chr8_3:45706732-45706751	Msa1290730:intron	30.0%
TGCTTAACATTGTTCTTTCA+CGG	-	chr8_3:45706982-45707001	Msa1290730:CDS	30.0%
TTTCTTATCATGCAACTTGA+TGG	-	chr8_3:45707051-45707070	Msa1290730:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	45705337	45709903	45705337	ID=Msa1290730;Name=Msa1290730
chr8_3	mRNA	45705337	45709903	45705337	ID=Msa1290730-mRNA-1;Parent=Msa1290730;Name=Msa1290730-mRNA-1;_AED=0.04;_eAED=0.04;_QI=513\|1\|1\|1\|1\|1\|7\|269\|516
chr8_3	exon	45705337	45706325	45705337	ID=Msa1290730-mRNA-1:exon:12662;Parent=Msa1290730-mRNA-1
chr8_3	exon	45706612	45706700	45706612	ID=Msa1290730-mRNA-1:exon:12661;Parent=Msa1290730-mRNA-1
chr8_3	exon	45706811	45707023	45706811	ID=Msa1290730-mRNA-1:exon:12660;Parent=Msa1290730-mRNA-1
chr8_3	exon	45707194	45707364	45707194	ID=Msa1290730-mRNA-1:exon:12659;Parent=Msa1290730-mRNA-1
chr8_3	exon	45708843	45709019	45708843	ID=Msa1290730-mRNA-1:exon:12658;Parent=Msa1290730-mRNA-1
chr8_3	exon	45709124	45709204	45709124	ID=Msa1290730-mRNA-1:exon:12657;Parent=Msa1290730-mRNA-1
chr8_3	exon	45709291	45709903	45709291	ID=Msa1290730-mRNA-1:exon:12656;Parent=Msa1290730-mRNA-1
chr8_3	five_prime_UTR	45709391	45709903	45709391	ID=Msa1290730-mRNA-1:five_prime_utr;Parent=Msa1290730-mRNA-1
chr8_3	CDS	45709291	45709390	45709291	ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3	CDS	45709124	45709204	45709124	ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3	CDS	45708843	45709019	45708843	ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3	CDS	45707194	45707364	45707194	ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3	CDS	45706811	45707023	45706811	ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3	CDS	45706612	45706700	45706612	ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3	CDS	45705606	45706325	45705606	ID=Msa1290730-mRNA-1:cds;Parent=Msa1290730-mRNA-1
chr8_3	three_prime_UTR	45705337	45705605	45705337	ID=Msa1290730-mRNA-1:three_prime_utr;Parent=Msa1290730-mRNA-1

Gene Sequence

>Msa1290730

ATGAGTAAGCAAATTTTGCTACTAGCTCTCATTCTTCATCTTCTCTTTGGAACATTCTTAGTTTCAGTTTCAGCTGCACCATCAACCACTTCACCTGCAAAACTTGTTTCTGGGTTTCTCTCCAATGCTGTTCCTGCTTTTTCTAAATGGGTTTGGTCCCTTAAAGCTACCACCAAAACTGGGGTTTTGAGCAAATCAATGATGAAGTTTGAGAGTGGTTACAATGTGGAAACTGTGTTTGATGGAAGTAAGCTTGGAATTGAGCCTTATGCTGTTGAGGTTTTGCATAATGGGGAGCTTCTTATTCTTGATTCTGCTAATAGTAACCTTTACAGAATCTCTTCATCACTCTCTTTGTATAGCAGACCGAAGCTGGTGGCTGGATCAGCTGAAGGATATTCTGGACATGTTGATGGGAGGCTCAGGGAGGCTAGGATGAACCATCCAAAGGGGATAACTGTTGATGACCGAGGAAATATTTATGTTGCAGATACTGCAAATATGGCAATTAGGAAAATTAGTGATTCGGGGGTCACAACAATTGCTGGAGGAAAATGGAGCCGTGGAGGGGGCCACGTTGATGGACCAAGTGAAGAAGCTAAATTTTCTGATGACTTTGATGTGGTTTATGTTGGAAGTAGTTGTTCCCTGCTTGTTGTAGACAGAGGAAACCAAGCCATTAGGGAGATCCAACTCCACTTTGATGATTGTGCATATCGATATGGCAGTGATTTCCCTCTTGGAATTGCAATGCTTGTTGGGGCTGGTTTCTTTGGTTATATGCTGGCATTGCTGCAGCGTAGGCTCGGTACAATTGTAGAATCTCAGGATGCTCAGGTTCCACTAACAGTAATGCCTTCTGTTTCTCAAACTACATATCAAAAGCCCTTGAAATCTGTAAGGCCTCCATTGATTCCATCAGAATATGAACCCGAAAAGCAGGAAGAAAGTTTCTTTGGATCTCTTGGTAAGCTTCTTGCGAATGCTGGCTCGTCAATGGTGGAGATAATGGGAGGATTATTTCCTGTTTTCAGAAGAAGACCACAGAGCTACCACCAATTTCAAAGGCAAACACTGATCCAACAATCTCAGAAGCAAGTGAATGATTGGCCAGCACAGGAAAGTTTCGTGATTCCTCGCGAAGACGAACCACCATCTATCGACACAAGGGCACCAACCCCTCGAAAAACCTATCCTTTCATGTCGAAAGATGCAGAAAAAATTCAACAGTTGCGGCAAAGTAAAGCATTCTACAGCGGGTGGGATGGAGATCAACATCAGCAACAACAACAACCGCAACCACATCAACAACAACAGCAGCCGCAGCAGCAACAACAAAAACATCATTATCGCCATCAGTACCAATCGTCGGTCCCTCACACTTTTTATGAGCAAAGCAATGAGACAACCAATGAGGTAGTTTTTGGGGCAGTGCAGGAACAGGAGGGGAAGAAGGAATCTGTGGTCATCACACCTGTTGAATATGGAGGCTCATTGTACGAACATCGCGATTTTCGGTCTCGAATGAGTTACATGGGTTATAAGTATTGA

Protein sequence

>Msa1290730

MSKQILLLALILHLLFGTFLVSVSAAPSTTSPAKLVSGFLSNAVPAFSKWVWSLKATTKTGVLSKSMMKFESGYNVETVFDGSKLGIEPYAVEVLHNGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGRLREARMNHPKGITVDDRGNIYVADTANMAIRKISDSGVTTIAGGKWSRGGGHVDGPSEEAKFSDDFDVVYVGSSCSLLVVDRGNQAIREIQLHFDDCAYRYGSDFPLGIAMLVGAGFFGYMLALLQRRLGTIVESQDAQVPLTVMPSVSQTTYQKPLKSVRPPLIPSEYEPEKQEESFFGSLGKLLANAGSSMVEIMGGLFPVFRRRPQSYHQFQRQTLIQQSQKQVNDWPAQESFVIPREDEPPSIDTRAPTPRKTYPFMSKDAEKIQQLRQSKAFYSGWDGDQHQQQQQPQPHQQQQQPQQQQQKHHYRHQYQSSVPHTFYEQSNETTNEVVFGAVQEQEGKKESVVITPVEYGGSLYEHRDFRSRMSYMGYKY*