AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1290770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1290770 MtrunA17_Chr8g0364941 95.660 530 9 3 1 525 1 521 0.0 1031
Msa1290770 MtrunA17_Chr5g0413801 66.250 560 116 11 22 525 18 560 0.0 667
Msa1290770 MtrunA17_Chr6g0451131 48.034 585 219 14 1 525 1 560 1.04e-165 481
Msa1290770 MtrunA17_Chr2g0315511 39.798 397 191 10 14 403 10 365 3.18e-75 246
Msa1290770 MtrunA17_Chr8g0359721 54.938 162 63 2 119 280 24 175 2.20e-49 168
Msa1290770 MtrunA17_Chr8g0364901 37.264 212 113 7 71 276 31 228 1.01e-30 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1290770 AT1G70280.2 64.211 475 141 7 24 494 20 469 0.0 555
Msa1290770 AT1G23880.1 60.121 494 161 9 1 491 61 521 0.0 551
Msa1290770 AT1G70280.1 65.278 432 121 7 67 494 1 407 1.72e-180 514
Msa1290770 AT1G23880.2 61.502 426 134 6 67 491 1 397 1.91e-170 488
Msa1290770 AT5G14890.1 46.809 517 202 14 20 523 21 477 4.11e-139 410
Msa1290770 AT3G14860.1 39.888 356 173 8 52 403 55 373 1.54e-71 236
Msa1290770 AT3G14860.2 40.449 356 172 9 52 403 55 374 1.55e-71 236
Msa1290770 AT1G23890.1 45.946 185 88 4 63 246 18 191 3.19e-41 149
Msa1290770 AT1G23890.2 47.191 178 82 4 70 246 25 191 2.39e-40 150

Find 164 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTCAGAACTTGTTTC+TGG 0.022910 8_3:-45736005 Msa1290770:intron
CTTCTTTCTCAACATGAATT+AGG 0.081628 8_3:-45736288 Msa1290770:five_prime_UTR
CAAAATTTGCTTACTCATTT+TGG 0.085586 8_3:+45736186 None:intergenic
ATCAACATATATCAAAATTT+TGG 0.151565 8_3:-45736532 Msa1290770:five_prime_UTR
CTCATTCTTCATCTTCTCTT+TGG 0.186851 8_3:-45736154 Msa1290770:CDS
CTTGTTGGGGCTGGTTTCTT+TGG 0.229956 8_3:-45733456 Msa1290770:CDS
CAGGAATTGCAATGCTTGTT+GGG 0.255059 8_3:-45733470 Msa1290770:CDS
TTCTTTCTCAACATGAATTA+GGG 0.263795 8_3:-45736287 Msa1290770:five_prime_UTR
TTTAAACAACAATGGTAATT+AGG 0.264246 8_3:-45732209 Msa1290770:three_prime_UTR
TGTTGCAGATACTGCAAATA+TGG 0.266517 8_3:-45734008 Msa1290770:CDS
AAGCAGGAAGAAAGTTTCTT+TGG 0.273520 8_3:-45732987 Msa1290770:CDS
TCAGTGCTTGCCTTTGAAAT+TGG 0.286658 8_3:+45732868 None:intergenic
AAGCCATAGAAATCTATATT+TGG 0.290099 8_3:+45732236 None:intergenic
TTTCTTCATCCTTTCCCTCT+TGG 0.294066 8_3:-45733956 Msa1290770:intron
GACTCAATCCAGCTTTGATT+TGG 0.302071 8_3:-45732339 Msa1290770:three_prime_UTR
TCACTTGCTTCTGAGATTGT+TGG 0.308982 8_3:+45732844 None:intergenic
CAGAGGAAACCAAGCCATTA+GGG 0.312716 8_3:-45733657 Msa1290770:CDS
GGATCAGCTGAAGGATATTC+TGG 0.315805 8_3:-45734109 Msa1290770:CDS
TCCATATACCATACCAGTTT+TGG 0.327673 8_3:+45735923 None:intergenic
TTGCCAAATATAGATTTCTA+TGG 0.328212 8_3:-45732239 Msa1290770:three_prime_UTR
CAACAATTGCTGGAGGAAAA+TGG 0.329939 8_3:-45733784 Msa1290770:CDS
GAAAGTTTCTTTGGATCTCT+TGG 0.345987 8_3:-45732978 Msa1290770:CDS
ACAGAGGAAACCAAGCCATT+AGG 0.349242 8_3:-45733658 Msa1290770:CDS
GCAGGAATTGCAATGCTTGT+TGG 0.361301 8_3:-45733471 Msa1290770:intron
CTCGTCAATGGTGGAGATAA+TGG 0.361575 8_3:-45732934 Msa1290770:CDS
TCATTTCAGAACTTGTTTCT+GGG 0.363224 8_3:-45736004 Msa1290770:intron
ATACTGCAAATATGGCAATT+AGG 0.364589 8_3:-45734000 Msa1290770:CDS
GTCATCACACCTGTTGAATA+TGG 0.365763 8_3:-45732459 Msa1290770:CDS
TCAGGGGTCACAACAATTGC+TGG 0.373460 8_3:-45733794 Msa1290770:intron
ATTAGGAAAATTAGTGATTC+GGG 0.377436 8_3:-45733983 Msa1290770:CDS
CTTAAAGCTACCACCAAAAC+TGG 0.381528 8_3:-45735936 Msa1290770:intron
GATGATTGTGCATATCGATA+TGG 0.382744 8_3:-45733617 Msa1290770:CDS
AATTAGGAAAATTAGTGATT+CGG 0.383780 8_3:-45733984 Msa1290770:CDS
AGTATTGAGTATATATAGTT+AGG 0.386080 8_3:-45732380 Msa1290770:exon
TCATCAACAGTTATCCCCTT+TGG 0.399379 8_3:+45734046 None:intergenic
GACATGTTGATGGGAGGCTC+AGG 0.403629 8_3:-45734087 Msa1290770:CDS
TGGTTTCTTTGGTTATATGC+TGG 0.403960 8_3:-45733445 Msa1290770:CDS
ATCCAGCTTTGATTTGGAAT+GGG 0.408218 8_3:-45732333 Msa1290770:three_prime_UTR
AAATGAAGAACAAGTTGTTA+TGG 0.413482 8_3:+45736215 None:intergenic
GGTGCCCTTGTGTCGATAGA+TGG 0.413822 8_3:+45732771 None:intergenic
TGTGGTCTTCTTCTGAAAAC+AGG 0.420773 8_3:+45732900 None:intergenic
CTTGCAGGTGAAGTGGTTGA+TGG 0.422939 8_3:+45736103 None:intergenic
GCTGATCCAGCTACCAGCTT+CGG 0.423195 8_3:+45734124 None:intergenic
CTCAGAAGCAAGTGAATGAT+TGG 0.423951 8_3:-45732836 Msa1290770:CDS
CCAATGGTGGATAACAATTC+TGG 0.430377 8_3:+45736555 None:intergenic
GGTAAGCTTCTTGCGAATGC+TGG 0.432610 8_3:-45732957 Msa1290770:CDS
TGGAGGCCTTACAGATTTCA+AGG 0.434455 8_3:+45733037 None:intergenic
AATGTGGAAACTGTGTTTGA+TGG 0.436794 8_3:-45735762 Msa1290770:CDS
GACTTTGATGTGGTTTATGT+TGG 0.439630 8_3:-45733707 Msa1290770:CDS
GTTGGATCTCCCTAATGGCT+TGG 0.442364 8_3:+45733648 None:intergenic
TGCAGATAGCAGACCGAAGC+TGG 0.448340 8_3:-45734137 Msa1290770:intron
GCATTGCTGCAGCGTAGGCT+CGG 0.449626 8_3:-45733423 Msa1290770:CDS
TGCAAAACCTCAACAGCATA+AGG 0.450890 8_3:+45735720 None:intergenic
TATGGCAGTGATTTCCCTCT+TGG 0.451443 8_3:-45733599 Msa1290770:intron
ACAGAAGGCATTACTGTTAG+TGG 0.454864 8_3:+45733083 None:intergenic
CGGTACAATTGTAGAATCTC+AGG 0.455028 8_3:-45733403 Msa1290770:CDS
TGCGAATGCTGGCTCGTCAA+TGG 0.455318 8_3:-45732946 Msa1290770:CDS
CAATTCATATTATGATCATC+AGG 0.456575 8_3:+45732273 None:intergenic
AGGTTAAGAGAGAGAGGGAA+AGG 0.459417 8_3:+45736429 None:intergenic
AATCCAGCTTTGATTTGGAA+TGG 0.459606 8_3:-45732334 Msa1290770:three_prime_UTR
AGCAGACCGAAGCTGGTAGC+TGG 0.459795 8_3:-45734130 Msa1290770:CDS
CACAATCATCAAAGTGGAGT+TGG 0.462222 8_3:+45733630 None:intergenic
ATTGCAATGCTTGTTGGGGC+TGG 0.462265 8_3:-45733465 Msa1290770:CDS
TCGTCAATGGTGGAGATAAT+GGG 0.467902 8_3:-45732933 Msa1290770:CDS
TCATATTCTGATGGAATCAA+TGG 0.473880 8_3:+45733017 None:intergenic
ATCACGAAACTTTCCTGTGC+TGG 0.477387 8_3:+45732813 None:intergenic
TTATGCTTAGCATGTGAATC+CGG 0.477967 8_3:+45736685 None:intergenic
GCAGGAACAGGAGGGGAAGA+AGG 0.479757 8_3:-45732490 Msa1290770:CDS
GAAAATTTAGCTTCTTCACT+TGG 0.479921 8_3:+45733734 None:intergenic
TGTGAAAGGTTAAGAGAGAG+AGG 0.480100 8_3:+45736423 None:intergenic
AGGAAAATGGAGCCGTGGAG+GGG 0.481087 8_3:-45733771 Msa1290770:CDS
GGAAAATGGAGCCGTGGAGG+GGG 0.481323 8_3:-45733770 Msa1290770:CDS
GACAAGAGAGTGACTACTAG+TGG 0.488891 8_3:+45736476 None:intergenic
GGATATTCTGGACATGTTGA+TGG 0.492558 8_3:-45734097 Msa1290770:CDS
CCAGAATTGTTATCCACCAT+TGG 0.495511 8_3:-45736555 Msa1290770:five_prime_UTR
GGTTAAGAGAGAGAGGGAAA+GGG 0.496937 8_3:+45736430 None:intergenic
AATGAGCCTCCATATTCAAC+AGG 0.498016 8_3:+45732450 None:intergenic
GAGGAAAATGGAGCCGTGGA+GGG 0.498407 8_3:-45733772 Msa1290770:CDS
GTGGAGTTGGATCTCCCTAA+TGG 0.498446 8_3:+45733643 None:intergenic
ATGGGAGGCTCAGGGAGGCT+AGG 0.499515 8_3:-45734078 Msa1290770:CDS
AGAATATGAACCCGAAAAGC+AGG 0.507195 8_3:-45733003 Msa1290770:CDS
TTCCTCTGTCTACAACAAGC+AGG 0.507435 8_3:+45733672 None:intergenic
AAAAGCCCTTGAAATCTGTA+AGG 0.509266 8_3:-45733043 Msa1290770:CDS
TCCCCATTCCAAATCAAAGC+TGG 0.509734 8_3:+45732331 None:intergenic
TGGGGCAGTGCAGGAACAGG+AGG 0.528931 8_3:-45732499 Msa1290770:CDS
AACAACAATGGTAATTAGGA+AGG 0.530711 8_3:-45732205 Msa1290770:three_prime_UTR
AGTGAATGATTGGCCAGCAC+AGG 0.531678 8_3:-45732826 Msa1290770:CDS
GCATTCTACAGCGGGTGGGA+TGG 0.534762 8_3:-45732678 Msa1290770:CDS
TTTCTAGAGACTACACCAAA+AGG 0.537307 8_3:+45736508 None:intergenic
TCTGCATCTTTCGACATGAA+AGG 0.538618 8_3:+45732729 None:intergenic
GGCTGCTGTTGTTGTTGATG+TGG 0.540640 8_3:+45732624 None:intergenic
CAACAGTTATCCCCTTTGGA+TGG 0.541128 8_3:+45734050 None:intergenic
ATCTTTCGACATGAAAGGAT+AGG 0.541256 8_3:+45732734 None:intergenic
GGAGGAAAATGGAGCCGTGG+AGG 0.541631 8_3:-45733773 Msa1290770:CDS
AATTGAGCCTTATGCTGTTG+AGG 0.544199 8_3:-45735727 Msa1290770:CDS
TGTTGTTGTTGATGTGGTTG+CGG 0.544910 8_3:+45732630 None:intergenic
TCGGTCTCGAATGAGTTACA+TGG 0.544992 8_3:-45732409 Msa1290770:CDS
GTGTTTGATGGAAGTAAGCT+TGG 0.547130 8_3:-45735750 Msa1290770:CDS
TCCAGCTTTGATTTGGAATG+GGG 0.547637 8_3:-45732332 Msa1290770:three_prime_UTR
AAAGTAAAGCATTCTACAGC+GGG 0.550622 8_3:-45732686 Msa1290770:CDS
GTGATGAAGAGATTCTGTAA+AGG 0.551414 8_3:+45735658 None:intergenic
AACAATGGTAATTAGGAAGG+TGG 0.551782 8_3:-45732202 Msa1290770:three_prime_UTR
GTGCTTGCCTTTGAAATTGG+TGG 0.551930 8_3:+45732871 None:intergenic
CTGCAACATAAATATTTCCT+CGG 0.552933 8_3:+45734023 None:intergenic
GCTTGTTGTTTAAACAACAA+TGG 0.553198 8_3:-45732217 Msa1290770:three_prime_UTR
GCTAGGATGAACCATCCAAA+GGG 0.554047 8_3:-45734061 Msa1290770:CDS
AATATATCACCAAGAGGGAA+AGG 0.556137 8_3:+45733947 None:intergenic
GATATTCTGGACATGTTGAT+GGG 0.558030 8_3:-45734096 Msa1290770:CDS
TTTGATATATGTTGATCCAA+TGG 0.563572 8_3:+45736539 None:intergenic
CGGTCTCGAATGAGTTACAT+GGG 0.565662 8_3:-45732408 Msa1290770:CDS
TGAAGAACAAGTTGTTATGG+AGG 0.567248 8_3:+45736218 None:intergenic
ACATGTTGATGGGAGGCTCA+GGG 0.573249 8_3:-45734086 Msa1290770:CDS
AGCTTTGATTTGGAATGGGG+AGG 0.573423 8_3:-45732329 Msa1290770:three_prime_UTR
AAGTGTGAGGGACCGACGAT+TGG 0.581409 8_3:+45732562 None:intergenic
GGGAGGATGAAATCAAATGT+AGG 0.583262 8_3:-45732312 Msa1290770:three_prime_UTR
GCTTAGCATGTGAATCCGGT+TGG 0.583543 8_3:+45736689 None:intergenic
ACAAGAGAGTGACTACTAGT+GGG 0.583631 8_3:+45736477 None:intergenic
CTGGTAGCTGGATCAGCTGA+AGG 0.583900 8_3:-45734118 Msa1290770:CDS
ACAATGGTAATTAGGAAGGT+GGG 0.584672 8_3:-45732201 Msa1290770:three_prime_UTR
GATATGCACAATCATCAAAG+TGG 0.588148 8_3:+45733624 None:intergenic
GGGGCAGTGCAGGAACAGGA+GGG 0.589930 8_3:-45732498 Msa1290770:CDS
TGCTGGCATTGCTGCAGCGT+AGG 0.592474 8_3:-45733428 Msa1290770:CDS
GGAGGCCTTACAGATTTCAA+GGG 0.593740 8_3:+45733038 None:intergenic
GGCTAGGATGAACCATCCAA+AGG 0.596756 8_3:-45734062 Msa1290770:CDS
AGAGCTACCACCAATTTCAA+AGG 0.597932 8_3:-45732878 Msa1290770:CDS
GGACCGACGATTGGTACTGA+TGG 0.601463 8_3:+45732571 None:intergenic
AGAAAAGAGAGGAAAATGAG+TGG 0.611244 8_3:+45736369 None:intergenic
GTGAAAGGTTAAGAGAGAGA+GGG 0.612420 8_3:+45736424 None:intergenic
GTACTTACTTGCAGGTGAAG+TGG 0.615067 8_3:+45736096 None:intergenic
AGGAATTGCAATGCTTGTTG+GGG 0.616374 8_3:-45733469 Msa1290770:CDS
TCCCTGCTTGTTGTAGACAG+AGG 0.617020 8_3:-45733674 Msa1290770:CDS
ATGGTGGATAACAATTCTGG+TGG 0.617801 8_3:+45736558 None:intergenic
GTGAGTGAGAAGAGTGTGAA+AGG 0.617988 8_3:+45736409 None:intergenic
GGGCAGTGCAGGAACAGGAG+GGG 0.624818 8_3:-45732497 Msa1290770:CDS
TCCTCTGTCTACAACAAGCA+GGG 0.626459 8_3:+45733673 None:intergenic
GTAAAGCATTCTACAGCGGG+TGG 0.626899 8_3:-45732683 Msa1290770:CDS
GATATATGTTGATCCAATGG+TGG 0.628637 8_3:+45736542 None:intergenic
TATGCAGTTTGAGAAACAGA+AGG 0.631848 8_3:+45733068 None:intergenic
GGGTTCTTAGCAGAAAAGAG+AGG 0.635422 8_3:+45736358 None:intergenic
TGAAATTGGTGGTAGCTCTG+TGG 0.637791 8_3:+45732882 None:intergenic
ATCACACCTGTTGAATATGG+AGG 0.639031 8_3:-45732456 Msa1290770:CDS
AACCACCATCTATCGACACA+AGG 0.640539 8_3:-45732776 Msa1290770:CDS
TAAAGCATTCTACAGCGGGT+GGG 0.645434 8_3:-45732682 Msa1290770:CDS
TATTCTGATGGAATCAATGG+AGG 0.648038 8_3:+45733020 None:intergenic
CTTCACTTGGTCCATCAACG+TGG 0.652333 8_3:+45733747 None:intergenic
TCAATGATGAAGTTTGAGAG+TGG 0.653433 8_3:-45735789 Msa1290770:CDS
GGAGGGGAAGAAGGAATCTG+TGG 0.656900 8_3:-45732481 Msa1290770:CDS
AAAACAATATATCACCAAGA+GGG 0.657747 8_3:+45733942 None:intergenic
ATTCTGGACATGTTGATGGG+AGG 0.671648 8_3:-45734093 Msa1290770:CDS
GTTTGAGAGTGGTTACAATG+TGG 0.673385 8_3:-45735778 Msa1290770:CDS
GCTGGAGGAAAATGGAGCCG+TGG 0.674332 8_3:-45733776 Msa1290770:CDS
TCGCCATCAGTACCAATCGT+CGG 0.674819 8_3:-45732574 Msa1290770:CDS
GGGGTCACAACAATTGCTGG+AGG 0.677079 8_3:-45733791 Msa1290770:CDS
GATGGTGGTTCGTCTTCGCG+AGG 0.678196 8_3:+45732789 None:intergenic
CAAAGTAAAGCATTCTACAG+CGG 0.680426 8_3:-45732687 Msa1290770:CDS
GGGATAACTGTTGATGACCG+AGG 0.680794 8_3:-45734040 Msa1290770:CDS
GAATGCTGGCTCGTCAATGG+TGG 0.682237 8_3:-45732943 Msa1290770:CDS
AAGCAATGAGACAACCAATG+AGG 0.687276 8_3:-45732529 Msa1290770:CDS
ACCACCATCTATCGACACAA+GGG 0.689737 8_3:-45732775 Msa1290770:CDS
GCCCTTGTGTCGATAGATGG+TGG 0.693655 8_3:+45732774 None:intergenic
TCAATGGTGGAGATAATGGG+AGG 0.703995 8_3:-45732930 Msa1290770:CDS
CAAGAGAGTGACTACTAGTG+GGG 0.708351 8_3:+45736478 None:intergenic
TGTTGATGGGAGGCTCAGGG+AGG 0.745216 8_3:-45734083 Msa1290770:CDS
CTAGGATGAACCATCCAAAG+GGG 0.746879 8_3:-45734060 Msa1290770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTAATGTAATG+TGG + chr8_3:45732497-45732516 None:intergenic 10.0%
!! AAAAAAAACAAAACAAAAAA+TGG + chr8_3:45732946-45732965 None:intergenic 10.0%
!!! TGTTTTTTAGATTTATAATT+TGG - chr8_3:45733257-45733276 Msa1290770:intron 10.0%
!!! ATTTAATGATTATTACTTTT+TGG - chr8_3:45733295-45733314 Msa1290770:intron 10.0%
!!! ATCAACATATATCAAAATTT+TGG - chr8_3:45732288-45732307 Msa1290770:three_prime_UTR 15.0%
!!! AATTAAGATATCTTTTTTTC+AGG - chr8_3:45735008-45735027 Msa1290770:intron 15.0%
!!! ATTAAGATATCTTTTTTTCA+GGG - chr8_3:45735009-45735028 Msa1290770:intron 15.0%
!!! TTGAATTTTTATAACACAAT+TGG - chr8_3:45735484-45735503 Msa1290770:intron 15.0%
!!! TTTAGTTTTTAGCTTAAGAA+AGG + chr8_3:45732214-45732233 None:intergenic 20.0%
!!! ATGTAATGTGGTTTTTTTTT+GGG + chr8_3:45732485-45732504 None:intergenic 20.0%
!!! AATGTAATGTGGTTTTTTTT+TGG + chr8_3:45732486-45732505 None:intergenic 20.0%
!! ATCTCTTCATTGTATTATAT+TGG - chr8_3:45733436-45733455 Msa1290770:CDS 20.0%
!! ATTAAAACATCTTATAGCTT+TGG + chr8_3:45734337-45734356 None:intergenic 20.0%
!! AATTAGGAAAATTAGTGATT+CGG - chr8_3:45734836-45734855 Msa1290770:intron 20.0%
!! TACACAAAATTCAATCATTT+AGG + chr8_3:45734926-45734945 None:intergenic 20.0%
!!! ACTTTTATCATAAAGTTTAC+TGG + chr8_3:45734972-45734991 None:intergenic 20.0%
!!! TTAAGATATCTTTTTTTCAG+GGG - chr8_3:45735010-45735029 Msa1290770:intron 20.0%
!! TTCAATATAAATACATCAGA+AGG + chr8_3:45735469-45735488 None:intergenic 20.0%
!!! AGTATTGAGTATATATAGTT+AGG - chr8_3:45736440-45736459 Msa1290770:five_prime_UTR 20.0%
!! TTTAAACAACAATGGTAATT+AGG - chr8_3:45736611-45736630 Msa1290770:five_prime_UTR 20.0%
! TTTGATATATGTTGATCCAA+TGG + chr8_3:45732284-45732303 None:intergenic 25.0%
!! TATCAAAATTTTGGACCTTT+TGG - chr8_3:45732297-45732316 Msa1290770:three_prime_UTR 25.0%
! TTCTTTCTCAACATGAATTA+GGG - chr8_3:45732533-45732552 Msa1290770:CDS 25.0%
! GAGGTGTAAAAAGTAATAAT+GGG + chr8_3:45732586-45732605 None:intergenic 25.0%
! AAATGAAGAACAAGTTGTTA+TGG + chr8_3:45732608-45732627 None:intergenic 25.0%
!!! CAAAATTTGCTTACTCATTT+TGG + chr8_3:45732637-45732656 None:intergenic 25.0%
! ATGGAAGCAAAATAAGAAAT+GGG + chr8_3:45732757-45732776 None:intergenic 25.0%
! AATGGAAGCAAAATAAGAAA+TGG + chr8_3:45732758-45732777 None:intergenic 25.0%
!!! TTTTTGTGTGTTTTTGTTGA+AGG - chr8_3:45732995-45733014 Msa1290770:CDS 25.0%
!!! TTTTGTGTGTTTTTGTTGAA+GGG - chr8_3:45732996-45733015 Msa1290770:CDS 25.0%
! TGGATTATGTTGTGTATAAT+TGG - chr8_3:45733333-45733352 Msa1290770:intron 25.0%
! ATTATGTTGTGTATAATTGG+TGG - chr8_3:45733336-45733355 Msa1290770:intron 25.0%
! ATACAATGAAGAGATCAAAA+TGG + chr8_3:45733431-45733450 None:intergenic 25.0%
! ACTAGTGCTTATATAGAATT+TGG - chr8_3:45733465-45733484 Msa1290770:CDS 25.0%
! CTAGTGCTTATATAGAATTT+GGG - chr8_3:45733466-45733485 Msa1290770:CDS 25.0%
!! TATAGAATTTGGGATATGTT+TGG - chr8_3:45733476-45733495 Msa1290770:intron 25.0%
!!! TTCCCCTTTCATTTTTTAAA+AGG - chr8_3:45733903-45733922 Msa1290770:intron 25.0%
!!! CTCCTTTTAAAAAATGAAAG+GGG + chr8_3:45733908-45733927 None:intergenic 25.0%
!!! GCTCCTTTTAAAAAATGAAA+GGG + chr8_3:45733909-45733928 None:intergenic 25.0%
!!! AGCTCCTTTTAAAAAATGAA+AGG + chr8_3:45733910-45733929 None:intergenic 25.0%
! TCCTCTATGCATTAAATATT+TGG - chr8_3:45734101-45734120 Msa1290770:CDS 25.0%
! TCCAAATATTTAATGCATAG+AGG + chr8_3:45734105-45734124 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr8_3:45734209-45734228 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr8_3:45734210-45734229 None:intergenic 25.0%
! ATTAGGAAAATTAGTGATTC+GGG - chr8_3:45734837-45734856 Msa1290770:intron 25.0%
! AAAACAATATATCACCAAGA+GGG + chr8_3:45734881-45734900 None:intergenic 25.0%
! AAAAACAATATATCACCAAG+AGG + chr8_3:45734882-45734901 None:intergenic 25.0%
! AATCATTTAGGTATTAAGCA+TGG + chr8_3:45734914-45734933 None:intergenic 25.0%
!!! AGATTTTAGTTTTACCAAGA+GGG + chr8_3:45735238-45735257 None:intergenic 25.0%
!!! AAGATTTTAGTTTTACCAAG+AGG + chr8_3:45735239-45735258 None:intergenic 25.0%
! CAATTCATATTATGATCATC+AGG + chr8_3:45736550-45736569 None:intergenic 25.0%
! TTGCCAAATATAGATTTCTA+TGG - chr8_3:45736581-45736600 Msa1290770:five_prime_UTR 25.0%
! AAGCCATAGAAATCTATATT+TGG + chr8_3:45736587-45736606 None:intergenic 25.0%
CTTCTTTCTCAACATGAATT+AGG - chr8_3:45732532-45732551 Msa1290770:CDS 30.0%
! GTGTAAAAAGTAATAATGGG+AGG + chr8_3:45732583-45732602 None:intergenic 30.0%
! GGAGGTGTAAAAAGTAATAA+TGG + chr8_3:45732587-45732606 None:intergenic 30.0%
AAGCAAAATAAGAAATGGGT+TGG + chr8_3:45732753-45732772 None:intergenic 30.0%
! AGATGAGAACTTTGAAGAAA+TGG + chr8_3:45732776-45732795 None:intergenic 30.0%
! TTCATTTCAGAACTTGTTTC+TGG - chr8_3:45732815-45732834 Msa1290770:CDS 30.0%
! TCATTTCAGAACTTGTTTCT+GGG - chr8_3:45732816-45732835 Msa1290770:CDS 30.0%
!!! TGTTCCTGCTTTTTCTAAAT+GGG - chr8_3:45732853-45732872 Msa1290770:CDS 30.0%
!! TTTGTGTGTTTTTGTTGAAG+GGG - chr8_3:45732997-45733016 Msa1290770:CDS 30.0%
TTCATATACCTTGTGATCAT+TGG - chr8_3:45733215-45733234 Msa1290770:intron 30.0%
! AATTTGGGATATGTTTGGAT+TGG - chr8_3:45733481-45733500 Msa1290770:intron 30.0%
TTAAAGTTAGTGAGACTGTT+TGG - chr8_3:45733528-45733547 Msa1290770:intron 30.0%
TAAAGTTAGTGAGACTGTTT+GGG - chr8_3:45733529-45733548 Msa1290770:intron 30.0%
! TCTATTATGTTTTCAGCTCA+AGG + chr8_3:45733609-45733628 None:intergenic 30.0%
AAGTTACTAAAGACTCTGTT+TGG + chr8_3:45733743-45733762 None:intergenic 30.0%
!! TGCTCATCATTGTTATTTCA+CGG - chr8_3:45733781-45733800 Msa1290770:CDS 30.0%
TTCTTATCATGCAACTTGTA+AGG - chr8_3:45733853-45733872 Msa1290770:intron 30.0%
! TTGTAAGGTTTTCTTTGACT+TGG - chr8_3:45733868-45733887 Msa1290770:intron 30.0%
!! TGTAAGGTTTTCTTTGACTT+GGG - chr8_3:45733869-45733888 Msa1290770:intron 30.0%
!!! CAATGTTTTTAGACGATTCA+TGG - chr8_3:45733936-45733955 Msa1290770:intron 30.0%
TAAGTCGTAGTCAATTAAAC+AGG + chr8_3:45734035-45734054 None:intergenic 30.0%
AATTGACTACGACTTATATG+TGG - chr8_3:45734039-45734058 Msa1290770:CDS 30.0%
TTGACATAATCTTCGATACT+TGG + chr8_3:45734152-45734171 None:intergenic 30.0%
ACTCATAACATGTTTGTAAG+CGG + chr8_3:45734397-45734416 None:intergenic 30.0%
CTGCAACATAAATATTTCCT+CGG + chr8_3:45734800-45734819 None:intergenic 30.0%
ATACTGCAAATATGGCAATT+AGG - chr8_3:45734820-45734839 Msa1290770:intron 30.0%
! GAAAATTTAGCTTCTTCACT+TGG + chr8_3:45735089-45735108 None:intergenic 30.0%
! ATTTTCTGATGACTTTGATG+TGG - chr8_3:45735103-45735122 Msa1290770:intron 30.0%
!! TCTATTTTCTCAAGTATTGC+TGG - chr8_3:45735628-45735647 Msa1290770:intron 30.0%
!! AAACATCTTATGCTTTTTGC+AGG - chr8_3:45735706-45735725 Msa1290770:CDS 30.0%
TCATATTCTGATGGAATCAA+TGG + chr8_3:45735806-45735825 None:intergenic 30.0%
CAGAAAAAATTCAACAGTTG+CGG - chr8_3:45736110-45736129 Msa1290770:CDS 30.0%
! TTTGCTCATAAAAAGTGTGA+GGG + chr8_3:45736273-45736292 None:intergenic 30.0%
!! GCTTGTTGTTTAAACAACAA+TGG - chr8_3:45736603-45736622 Msa1290770:five_prime_UTR 30.0%
AACAACAATGGTAATTAGGA+AGG - chr8_3:45736615-45736634 Msa1290770:five_prime_UTR 30.0%
TTATGCTTAGCATGTGAATC+CGG + chr8_3:45732138-45732157 None:intergenic 35.0%
GATATATGTTGATCCAATGG+TGG + chr8_3:45732281-45732300 None:intergenic 35.0%
! TTTCTAGAGACTACACCAAA+AGG + chr8_3:45732315-45732334 None:intergenic 35.0%
AGGGAAAGGGAAAAAGATAT+TGG + chr8_3:45732380-45732399 None:intergenic 35.0%
AGAAAAGAGAGGAAAATGAG+TGG + chr8_3:45732454-45732473 None:intergenic 35.0%
TGAAGAACAAGTTGTTATGG+AGG + chr8_3:45732605-45732624 None:intergenic 35.0%
CTCATTCTTCATCTTCTCTT+TGG - chr8_3:45732666-45732685 Msa1290770:CDS 35.0%
!!! CTGTTCCTGCTTTTTCTAAA+TGG - chr8_3:45732852-45732871 Msa1290770:CDS 35.0%
CAAACCCATTTAGAAAAAGC+AGG + chr8_3:45732860-45732879 None:intergenic 35.0%
!!! CTGCTTTTTCTAAATGGGTT+TGG - chr8_3:45732858-45732877 Msa1290770:CDS 35.0%
!!! AGTTTTGGTGGTAGCTTTAA+GGG + chr8_3:45732885-45732904 None:intergenic 35.0%
!! ATATACCATACCAGTTTTGG+TGG + chr8_3:45732897-45732916 None:intergenic 35.0%
ACCAAAACTGGTATGGTATA+TGG - chr8_3:45732896-45732915 Msa1290770:CDS 35.0%
! TCCATATACCATACCAGTTT+TGG + chr8_3:45732900-45732919 None:intergenic 35.0%
TCAATGATGAAGTTTGAGAG+TGG - chr8_3:45733031-45733050 Msa1290770:CDS 35.0%
AATGTGGAAACTGTGTTTGA+TGG - chr8_3:45733058-45733077 Msa1290770:CDS 35.0%
! CTGTTGAGGTTTTGCATAAT+GGG - chr8_3:45733107-45733126 Msa1290770:intron 35.0%
! TGTTGAGGTTTTGCATAATG+GGG - chr8_3:45733108-45733127 Msa1290770:intron 35.0%
GTGATGAAGAGATTCTGTAA+AGG + chr8_3:45733165-45733184 None:intergenic 35.0%
GAATTAAGCCAATGATCACA+AGG + chr8_3:45733226-45733245 None:intergenic 35.0%
TTTGGAGATTAGATGCTTGA+TGG - chr8_3:45733313-45733332 Msa1290770:intron 35.0%
! TGTTGTGTATAATTGGTGGT+TGG - chr8_3:45733340-45733359 Msa1290770:intron 35.0%
! GTTGTGTATAATTGGTGGTT+GGG - chr8_3:45733341-45733360 Msa1290770:intron 35.0%
AAAATGAAAGGGGAATACCA+CGG + chr8_3:45733898-45733917 None:intergenic 35.0%
AAGTTCATTACTGTCTGAGA+TGG - chr8_3:45733989-45734008 Msa1290770:CDS 35.0%
ATTAAACAGGAGGAAAACGA+CGG + chr8_3:45734022-45734041 None:intergenic 35.0%
CTTATTTCCATAAGCTCTCT+AGG + chr8_3:45734367-45734386 None:intergenic 35.0%
ACATCTTCATCAAGGTCATA+GGG + chr8_3:45734525-45734544 None:intergenic 35.0%
TACATCTTCATCAAGGTCAT+AGG + chr8_3:45734526-45734545 None:intergenic 35.0%
AATGCGATACATCTTCATCA+AGG + chr8_3:45734533-45734552 None:intergenic 35.0%
!! TGCATTTTGATATGTGTCAG+CGG - chr8_3:45734565-45734584 Msa1290770:intron 35.0%
GAATGAAGTATACACATGCA+AGG + chr8_3:45734633-45734652 None:intergenic 35.0%
GATATTCTGGACATGTTGAT+GGG - chr8_3:45734724-45734743 Msa1290770:intron 35.0%
TGTTGCAGATACTGCAAATA+TGG - chr8_3:45734812-45734831 Msa1290770:intron 35.0%
AATATATCACCAAGAGGGAA+AGG + chr8_3:45734876-45734895 None:intergenic 35.0%
GACTTTGATGTGGTTTATGT+TGG - chr8_3:45735113-45735132 Msa1290770:intron 35.0%
GATATGCACAATCATCAAAG+TGG + chr8_3:45735199-45735218 None:intergenic 35.0%
GATGATTGTGCATATCGATA+TGG - chr8_3:45735203-45735222 Msa1290770:intron 35.0%
TGGTTTCTTTGGTTATATGC+TGG - chr8_3:45735375-45735394 Msa1290770:intron 35.0%
TATGCAGTTTGAGAAACAGA+AGG + chr8_3:45735755-45735774 None:intergenic 35.0%
AAAAGCCCTTGAAATCTGTA+AGG - chr8_3:45735777-45735796 Msa1290770:CDS 35.0%
TATTCTGATGGAATCAATGG+AGG + chr8_3:45735803-45735822 None:intergenic 35.0%
!!! TTTTCGGGTTCATATTCTGA+TGG + chr8_3:45735815-45735834 None:intergenic 35.0%
!! AAACTTTCTTCCTGCTTTTC+GGG + chr8_3:45735830-45735849 None:intergenic 35.0%
!! GAAACTTTCTTCCTGCTTTT+CGG + chr8_3:45735831-45735850 None:intergenic 35.0%
AAGCAGGAAGAAAGTTTCTT+TGG - chr8_3:45735833-45735852 Msa1290770:intron 35.0%
GAAAGTTTCTTTGGATCTCT+TGG - chr8_3:45735842-45735861 Msa1290770:intron 35.0%
!! TGAAAGGATAGGTTTTTCGA+GGG + chr8_3:45736078-45736097 None:intergenic 35.0%
! ATGAAAGGATAGGTTTTTCG+AGG + chr8_3:45736079-45736098 None:intergenic 35.0%
ATCTTTCGACATGAAAGGAT+AGG + chr8_3:45736089-45736108 None:intergenic 35.0%
! CAAAGTAAAGCATTCTACAG+CGG - chr8_3:45736133-45736152 Msa1290770:CDS 35.0%
! AAAGTAAAGCATTCTACAGC+GGG - chr8_3:45736134-45736153 Msa1290770:CDS 35.0%
! CTTTGCTCATAAAAAGTGTG+AGG + chr8_3:45736274-45736293 None:intergenic 35.0%
! ACAACCAATGAGGTAGTTTT+TGG - chr8_3:45736301-45736320 Msa1290770:five_prime_UTR 35.0%
! CAACCAATGAGGTAGTTTTT+GGG - chr8_3:45736302-45736321 Msa1290770:five_prime_UTR 35.0%
! AACCAATGAGGTAGTTTTTG+GGG - chr8_3:45736303-45736322 Msa1290770:five_prime_UTR 35.0%
!! AATCCAGCTTTGATTTGGAA+TGG - chr8_3:45736486-45736505 Msa1290770:five_prime_UTR 35.0%
!! ATCCAGCTTTGATTTGGAAT+GGG - chr8_3:45736487-45736506 Msa1290770:five_prime_UTR 35.0%
AACAATGGTAATTAGGAAGG+TGG - chr8_3:45736618-45736637 Msa1290770:five_prime_UTR 35.0%
ACAATGGTAATTAGGAAGGT+GGG - chr8_3:45736619-45736638 Msa1290770:five_prime_UTR 35.0%
!! ATGGTGGATAACAATTCTGG+TGG + chr8_3:45732265-45732284 None:intergenic 40.0%
!! CCAATGGTGGATAACAATTC+TGG + chr8_3:45732268-45732287 None:intergenic 40.0%
CCAGAATTGTTATCCACCAT+TGG - chr8_3:45732265-45732284 Msa1290770:three_prime_UTR 40.0%
ACAAGAGAGTGACTACTAGT+GGG + chr8_3:45732346-45732365 None:intergenic 40.0%
GTGAAAGGTTAAGAGAGAGA+GGG + chr8_3:45732399-45732418 None:intergenic 40.0%
TGTGAAAGGTTAAGAGAGAG+AGG + chr8_3:45732400-45732419 None:intergenic 40.0%
AGAAAAAGCAGGAACAGCAT+TGG + chr8_3:45732849-45732868 None:intergenic 40.0%
!! CAGTTTTGGTGGTAGCTTTA+AGG + chr8_3:45732886-45732905 None:intergenic 40.0%
CTTAAAGCTACCACCAAAAC+TGG - chr8_3:45732884-45732903 Msa1290770:CDS 40.0%
GTTTGAGAGTGGTTACAATG+TGG - chr8_3:45733042-45733061 Msa1290770:CDS 40.0%
GTGTTTGATGGAAGTAAGCT+TGG - chr8_3:45733070-45733089 Msa1290770:CDS 40.0%
! AATTGAGCCTTATGCTGTTG+AGG - chr8_3:45733093-45733112 Msa1290770:CDS 40.0%
TGCAAAACCTCAACAGCATA+AGG + chr8_3:45733103-45733122 None:intergenic 40.0%
! GCTGTTGAGGTTTTGCATAA+TGG - chr8_3:45733106-45733125 Msa1290770:intron 40.0%
!!! GGGATGCTTTTTTCCGAATT+TGG - chr8_3:45733361-45733380 Msa1290770:intron 40.0%
!!! AATGCCGATGAGCTAGTTTT+GGG - chr8_3:45733384-45733403 Msa1290770:intron 40.0%
!! GTTTTTAGACGATTCATGGC+TGG - chr8_3:45733940-45733959 Msa1290770:intron 40.0%
GTCGTAGTCAATTAAACAGG+AGG + chr8_3:45734032-45734051 None:intergenic 40.0%
ATGCATAGAGGAGTAGAACT+GGG + chr8_3:45734093-45734112 None:intergenic 40.0%
AATGCATAGAGGAGTAGAAC+TGG + chr8_3:45734094-45734113 None:intergenic 40.0%
CTCATGATTATGACCCTGTT+TGG - chr8_3:45734193-45734212 Msa1290770:intron 40.0%
AACCTATCCTAGAGAGCTTA+TGG - chr8_3:45734357-45734376 Msa1290770:intron 40.0%
!! TTCCATAAGCTCTCTAGGAT+AGG + chr8_3:45734362-45734381 None:intergenic 40.0%
!! GCATTTTGATATGTGTCAGC+GGG - chr8_3:45734566-45734585 Msa1290770:intron 40.0%
!! CATTTTGATATGTGTCAGCG+GGG - chr8_3:45734567-45734586 Msa1290770:intron 40.0%
!! ATTTTGATATGTGTCAGCGG+GGG - chr8_3:45734568-45734587 Msa1290770:intron 40.0%
GGATATTCTGGACATGTTGA+TGG - chr8_3:45734723-45734742 Msa1290770:intron 40.0%
TCATCAACAGTTATCCCCTT+TGG + chr8_3:45734777-45734796 None:intergenic 40.0%
TTTCTTCATCCTTTCCCTCT+TGG - chr8_3:45734864-45734883 Msa1290770:intron 40.0%
CAACAATTGCTGGAGGAAAA+TGG - chr8_3:45735036-45735055 Msa1290770:intron 40.0%
CACAATCATCAAAGTGGAGT+TGG + chr8_3:45735193-45735212 None:intergenic 40.0%
GATTTATTTCCTTCGTTCGC+AGG - chr8_3:45735331-45735350 Msa1290770:intron 40.0%
CAGGAATTGCAATGCTTGTT+GGG - chr8_3:45735350-45735369 Msa1290770:intron 40.0%
! AGGAATTGCAATGCTTGTTG+GGG - chr8_3:45735351-45735370 Msa1290770:intron 40.0%
CGGTACAATTGTAGAATCTC+AGG - chr8_3:45735417-45735436 Msa1290770:intron 40.0%
ACATCAGAAGGAAGAAGACA+AGG + chr8_3:45735457-45735476 None:intergenic 40.0%
TGTCAAACACCGATAGATGT+CGG + chr8_3:45735583-45735602 None:intergenic 40.0%
! TTCTCAAGTATTGCTGGTGT+TGG - chr8_3:45735634-45735653 Msa1290770:intron 40.0%
!! ACTTTGATAAGCACTGACAC+AGG + chr8_3:45735682-45735701 None:intergenic 40.0%
!! ACAGAAGGCATTACTGTTAG+TGG + chr8_3:45735740-45735759 None:intergenic 40.0%
AGAATATGAACCCGAAAAGC+AGG - chr8_3:45735817-45735836 Msa1290770:intron 40.0%
! TCGTCAATGGTGGAGATAAT+GGG - chr8_3:45735887-45735906 Msa1290770:intron 40.0%
! TGTGGTCTTCTTCTGAAAAC+AGG + chr8_3:45735923-45735942 None:intergenic 40.0%
AGAGCTACCACCAATTTCAA+AGG - chr8_3:45735942-45735961 Msa1290770:CDS 40.0%
!! TCAGTGCTTGCCTTTGAAAT+TGG + chr8_3:45735955-45735974 None:intergenic 40.0%
!! TCACTTGCTTCTGAGATTGT+TGG + chr8_3:45735979-45735998 None:intergenic 40.0%
CTCAGAAGCAAGTGAATGAT+TGG - chr8_3:45735984-45736003 Msa1290770:CDS 40.0%
!!! GAAAGGATAGGTTTTTCGAG+GGG + chr8_3:45736077-45736096 None:intergenic 40.0%
TCTGCATCTTTCGACATGAA+AGG + chr8_3:45736094-45736113 None:intergenic 40.0%
! TGTTGTTGTTGATGTGGTTG+CGG + chr8_3:45736193-45736212 None:intergenic 40.0%
!!! TGTTTTTGTTGTTGCTGCTG+CGG + chr8_3:45736220-45736239 None:intergenic 40.0%
AAGCAATGAGACAACCAATG+AGG - chr8_3:45736291-45736310 Msa1290770:five_prime_UTR 40.0%
GTCATCACACCTGTTGAATA+TGG - chr8_3:45736361-45736380 Msa1290770:five_prime_UTR 40.0%
ATCACACCTGTTGAATATGG+AGG - chr8_3:45736364-45736383 Msa1290770:five_prime_UTR 40.0%
AATGAGCCTCCATATTCAAC+AGG + chr8_3:45736373-45736392 None:intergenic 40.0%
! TGTACGAACATCGCGATTTT+CGG - chr8_3:45736392-45736411 Msa1290770:five_prime_UTR 40.0%
! GACTCAATCCAGCTTTGATT+TGG - chr8_3:45736481-45736500 Msa1290770:five_prime_UTR 40.0%
!! TCCAGCTTTGATTTGGAATG+GGG - chr8_3:45736488-45736507 Msa1290770:five_prime_UTR 40.0%
GGGAGGATGAAATCAAATGT+AGG - chr8_3:45736508-45736527 Msa1290770:five_prime_UTR 40.0%
CAAGAGAGTGACTACTAGTG+GGG + chr8_3:45732345-45732364 None:intergenic 45.0%
GACAAGAGAGTGACTACTAG+TGG + chr8_3:45732347-45732366 None:intergenic 45.0%
GGTTAAGAGAGAGAGGGAAA+GGG + chr8_3:45732393-45732412 None:intergenic 45.0%
AGGTTAAGAGAGAGAGGGAA+AGG + chr8_3:45732394-45732413 None:intergenic 45.0%
! GTGAGTGAGAAGAGTGTGAA+AGG + chr8_3:45732414-45732433 None:intergenic 45.0%
GGGTTCTTAGCAGAAAAGAG+AGG + chr8_3:45732465-45732484 None:intergenic 45.0%
GTACTTACTTGCAGGTGAAG+TGG + chr8_3:45732727-45732746 None:intergenic 45.0%
! GTTGGTGAGTACTTACTTGC+AGG + chr8_3:45732735-45732754 None:intergenic 45.0%
AGCTACCACCAAAACTGGTA+TGG - chr8_3:45732889-45732908 Msa1290770:CDS 45.0%
GCTCATCGGCATTCCAAATT+CGG + chr8_3:45733377-45733396 None:intergenic 45.0%
!! GAATGCCGATGAGCTAGTTT+TGG - chr8_3:45733383-45733402 Msa1290770:intron 45.0%
CACACCCAAAACTAGCTCAT+CGG + chr8_3:45733391-45733410 None:intergenic 45.0%
GGAGTAGAACTGGGAAAAAG+TGG + chr8_3:45734084-45734103 None:intergenic 45.0%
! TTTTGATATGTGTCAGCGGG+GGG - chr8_3:45734569-45734588 Msa1290770:intron 45.0%
GGATCAGCTGAAGGATATTC+TGG - chr8_3:45734711-45734730 Msa1290770:intron 45.0%
! ATTCTGGACATGTTGATGGG+AGG - chr8_3:45734727-45734746 Msa1290770:intron 45.0%
GCTAGGATGAACCATCCAAA+GGG - chr8_3:45734759-45734778 Msa1290770:intron 45.0%
CTAGGATGAACCATCCAAAG+GGG - chr8_3:45734760-45734779 Msa1290770:intron 45.0%
CAACAGTTATCCCCTTTGGA+TGG + chr8_3:45734773-45734792 None:intergenic 45.0%
TCCTCTGTCTACAACAAGCA+GGG + chr8_3:45735150-45735169 None:intergenic 45.0%
TTCCTCTGTCTACAACAAGC+AGG + chr8_3:45735151-45735170 None:intergenic 45.0%
ACAGAGGAAACCAAGCCATT+AGG - chr8_3:45735162-45735181 Msa1290770:intron 45.0%
CAGAGGAAACCAAGCCATTA+GGG - chr8_3:45735163-45735182 Msa1290770:intron 45.0%
TATGGCAGTGATTTCCCTCT+TGG - chr8_3:45735221-45735240 Msa1290770:intron 45.0%
ATTGCAATTCCTGCGAACGA+AGG + chr8_3:45735343-45735362 None:intergenic 45.0%
GCAGGAATTGCAATGCTTGT+TGG - chr8_3:45735349-45735368 Msa1290770:intron 45.0%
CTTCAAATTGAAGACGTGCC+CGG - chr8_3:45735554-45735573 Msa1290770:intron 45.0%
!! CTTATGCTTTTTGCAGGCTC+AGG - chr8_3:45735712-45735731 Msa1290770:CDS 45.0%
GGAGGCCTTACAGATTTCAA+GGG + chr8_3:45735785-45735804 None:intergenic 45.0%
TGGAGGCCTTACAGATTTCA+AGG + chr8_3:45735786-45735805 None:intergenic 45.0%
! CTCGTCAATGGTGGAGATAA+TGG - chr8_3:45735886-45735905 Msa1290770:intron 45.0%
!! TCAATGGTGGAGATAATGGG+AGG - chr8_3:45735890-45735909 Msa1290770:intron 45.0%
! TGAAATTGGTGGTAGCTCTG+TGG + chr8_3:45735941-45735960 None:intergenic 45.0%
!! GTGCTTGCCTTTGAAATTGG+TGG + chr8_3:45735952-45735971 None:intergenic 45.0%
ATCACGAAACTTTCCTGTGC+TGG + chr8_3:45736010-45736029 None:intergenic 45.0%
AACCACCATCTATCGACACA+AGG - chr8_3:45736044-45736063 Msa1290770:intron 45.0%
ACCACCATCTATCGACACAA+GGG - chr8_3:45736045-45736064 Msa1290770:intron 45.0%
! TAAAGCATTCTACAGCGGGT+GGG - chr8_3:45736138-45736157 Msa1290770:CDS 45.0%
TGCCCCAAAAACTACCTCAT+TGG + chr8_3:45736308-45736327 None:intergenic 45.0%
TCGGTCTCGAATGAGTTACA+TGG - chr8_3:45736411-45736430 Msa1290770:five_prime_UTR 45.0%
CGGTCTCGAATGAGTTACAT+GGG - chr8_3:45736412-45736431 Msa1290770:five_prime_UTR 45.0%
TCCCCATTCCAAATCAAAGC+TGG + chr8_3:45736492-45736511 None:intergenic 45.0%
!! AGCTTTGATTTGGAATGGGG+AGG - chr8_3:45736491-45736510 Msa1290770:five_prime_UTR 45.0%
GCTTAGCATGTGAATCCGGT+TGG + chr8_3:45732134-45732153 None:intergenic 50.0%
CTTGCAGGTGAAGTGGTTGA+TGG + chr8_3:45732720-45732739 None:intergenic 50.0%
!!! CGATGAGCTAGTTTTGGGTG+TGG - chr8_3:45733389-45733408 Msa1290770:intron 50.0%
!!! AGCTAGTTTTGGGTGTGGTG+TGG - chr8_3:45733394-45733413 Msa1290770:intron 50.0%
! AGACGATTCATGGCTGGTCA+TGG - chr8_3:45733946-45733965 Msa1290770:intron 50.0%
AACAGGAGGAAAACGACGGT+AGG + chr8_3:45734018-45734037 None:intergenic 50.0%
! ACATGTTGATGGGAGGCTCA+GGG - chr8_3:45734734-45734753 Msa1290770:intron 50.0%
GGCTAGGATGAACCATCCAA+AGG - chr8_3:45734758-45734777 Msa1290770:intron 50.0%
!! GGGATAACTGTTGATGACCG+AGG - chr8_3:45734780-45734799 Msa1290770:intron 50.0%
TCAGGGGTCACAACAATTGC+TGG - chr8_3:45735026-45735045 Msa1290770:intron 50.0%
CTTCACTTGGTCCATCAACG+TGG + chr8_3:45735076-45735095 None:intergenic 50.0%
!! TCCCTGCTTGTTGTAGACAG+AGG - chr8_3:45735146-45735165 Msa1290770:intron 50.0%
GTTGGATCTCCCTAATGGCT+TGG + chr8_3:45735175-45735194 None:intergenic 50.0%
GTGGAGTTGGATCTCCCTAA+TGG + chr8_3:45735180-45735199 None:intergenic 50.0%
! ATTGCAATGCTTGTTGGGGC+TGG - chr8_3:45735355-45735374 Msa1290770:intron 50.0%
!! CTTGTTGGGGCTGGTTTCTT+TGG - chr8_3:45735364-45735383 Msa1290770:intron 50.0%
!! ATAAGCACTGACACAGGCAC+CGG + chr8_3:45735676-45735695 None:intergenic 50.0%
GGTAAGCTTCTTGCGAATGC+TGG - chr8_3:45735863-45735882 Msa1290770:intron 50.0%
! AGTGAATGATTGGCCAGCAC+AGG - chr8_3:45735994-45736013 Msa1290770:CDS 50.0%
!!! GGATAGGTTTTTCGAGGGGT+TGG + chr8_3:45736073-45736092 None:intergenic 50.0%
! GTAAAGCATTCTACAGCGGG+TGG - chr8_3:45736137-45736156 Msa1290770:CDS 50.0%
! GGCTGCTGTTGTTGTTGATG+TGG + chr8_3:45736199-45736218 None:intergenic 50.0%
TCGCCATCAGTACCAATCGT+CGG - chr8_3:45736246-45736265 Msa1290770:five_prime_UTR 50.0%
!! TTCTTTGACTTGGGTCGCCG+TGG - chr8_3:45733878-45733897 Msa1290770:intron 55.0%
TGCAGATAGCAGACCGAAGC+TGG - chr8_3:45734683-45734702 Msa1290770:intron 55.0%
GCTGATCCAGCTACCAGCTT+CGG + chr8_3:45734699-45734718 None:intergenic 55.0%
CTGGTAGCTGGATCAGCTGA+AGG - chr8_3:45734702-45734721 Msa1290770:intron 55.0%
! GACATGTTGATGGGAGGCTC+AGG - chr8_3:45734733-45734752 Msa1290770:intron 55.0%
GGGGTCACAACAATTGCTGG+AGG - chr8_3:45735029-45735048 Msa1290770:intron 55.0%
GAGGAAAATGGAGCCGTGGA+GGG - chr8_3:45735048-45735067 Msa1290770:intron 55.0%
AGGAAAATGGAGCCGTGGAG+GGG - chr8_3:45735049-45735068 Msa1290770:intron 55.0%
ACCGATAGATGTCGGACACC+GGG + chr8_3:45735575-45735594 None:intergenic 55.0%
CACCGATAGATGTCGGACAC+CGG + chr8_3:45735576-45735595 None:intergenic 55.0%
!! TAAGCACTGACACAGGCACC+GGG + chr8_3:45735675-45735694 None:intergenic 55.0%
!! TGCGAATGCTGGCTCGTCAA+TGG - chr8_3:45735874-45735893 Msa1290770:intron 55.0%
!! GAATGCTGGCTCGTCAATGG+TGG - chr8_3:45735877-45735896 Msa1290770:intron 55.0%
! GCCCTTGTGTCGATAGATGG+TGG + chr8_3:45736049-45736068 None:intergenic 55.0%
! GGTGCCCTTGTGTCGATAGA+TGG + chr8_3:45736052-45736071 None:intergenic 55.0%
! GGACCGACGATTGGTACTGA+TGG + chr8_3:45736252-45736271 None:intergenic 55.0%
AAGTGTGAGGGACCGACGAT+TGG + chr8_3:45736261-45736280 None:intergenic 55.0%
!!! GGTAGTTTTTGGGGCAGTGC+AGG - chr8_3:45736312-45736331 Msa1290770:five_prime_UTR 55.0%
!!! TTTTGGGGCAGTGCAGGAAC+AGG - chr8_3:45736318-45736337 Msa1290770:five_prime_UTR 55.0%
GGAGGGGAAGAAGGAATCTG+TGG - chr8_3:45736339-45736358 Msa1290770:five_prime_UTR 55.0%
AGCAGACCGAAGCTGGTAGC+TGG - chr8_3:45734690-45734709 Msa1290770:intron 60.0%
! TGTTGATGGGAGGCTCAGGG+AGG - chr8_3:45734737-45734756 Msa1290770:intron 60.0%
GCTGGAGGAAAATGGAGCCG+TGG - chr8_3:45735044-45735063 Msa1290770:intron 60.0%
GGAGGAAAATGGAGCCGTGG+AGG - chr8_3:45735047-45735066 Msa1290770:intron 60.0%
GGAAAATGGAGCCGTGGAGG+GGG - chr8_3:45735050-45735069 Msa1290770:intron 60.0%
TGCTGGCATTGCTGCAGCGT+AGG - chr8_3:45735392-45735411 Msa1290770:intron 60.0%
GCATTGCTGCAGCGTAGGCT+CGG - chr8_3:45735397-45735416 Msa1290770:intron 60.0%
GCCCGGTGTCCGACATCTAT+CGG - chr8_3:45735571-45735590 Msa1290770:intron 60.0%
TGGCGTGTCAGTGTCATGCC+CGG - chr8_3:45735654-45735673 Msa1290770:CDS 60.0%
! GATGGTGGTTCGTCTTCGCG+AGG + chr8_3:45736034-45736053 None:intergenic 60.0%
GCATTCTACAGCGGGTGGGA+TGG - chr8_3:45736142-45736161 Msa1290770:CDS 60.0%
GCAGGAACAGGAGGGGAAGA+AGG - chr8_3:45736330-45736349 Msa1290770:five_prime_UTR 60.0%
ATGGGAGGCTCAGGGAGGCT+AGG - chr8_3:45734742-45734761 Msa1290770:intron 65.0%
CATCAACGTGGCCCCCTCCA+CGG + chr8_3:45735064-45735083 None:intergenic 65.0%
TGGGGCAGTGCAGGAACAGG+AGG - chr8_3:45736321-45736340 Msa1290770:five_prime_UTR 65.0%
GGGGCAGTGCAGGAACAGGA+GGG - chr8_3:45736322-45736341 Msa1290770:five_prime_UTR 65.0%
GGGCAGTGCAGGAACAGGAG+GGG - chr8_3:45736323-45736342 Msa1290770:five_prime_UTR 65.0%
CGTGGAGGGGGCCACGTTGA+TGG - chr8_3:45735062-45735081 Msa1290770:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 45732126 45736716 45732126 ID=Msa1290770;Name=Msa1290770
chr8_3 mRNA 45732126 45736716 45732126 ID=Msa1290770-mRNA-1;Parent=Msa1290770;Name=Msa1290770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=513|0.83|0.85|1|1|1|7|269|525
chr8_3 exon 45732126 45733114 45732126 ID=Msa1290770-mRNA-1:exon:12669;Parent=Msa1290770-mRNA-1
chr8_3 exon 45733401 45733489 45733401 ID=Msa1290770-mRNA-1:exon:12668;Parent=Msa1290770-mRNA-1
chr8_3 exon 45733600 45733812 45733600 ID=Msa1290770-mRNA-1:exon:12667;Parent=Msa1290770-mRNA-1
chr8_3 exon 45733957 45734154 45733957 ID=Msa1290770-mRNA-1:exon:12666;Parent=Msa1290770-mRNA-1
chr8_3 exon 45735649 45735825 45735649 ID=Msa1290770-mRNA-1:exon:12665;Parent=Msa1290770-mRNA-1
chr8_3 exon 45735937 45736017 45735937 ID=Msa1290770-mRNA-1:exon:12664;Parent=Msa1290770-mRNA-1
chr8_3 exon 45736104 45736716 45736104 ID=Msa1290770-mRNA-1:exon:12663;Parent=Msa1290770-mRNA-1
chr8_3 five_prime_UTR 45736204 45736716 45736204 ID=Msa1290770-mRNA-1:five_prime_utr;Parent=Msa1290770-mRNA-1
chr8_3 CDS 45736104 45736203 45736104 ID=Msa1290770-mRNA-1:cds;Parent=Msa1290770-mRNA-1
chr8_3 CDS 45735937 45736017 45735937 ID=Msa1290770-mRNA-1:cds;Parent=Msa1290770-mRNA-1
chr8_3 CDS 45735649 45735825 45735649 ID=Msa1290770-mRNA-1:cds;Parent=Msa1290770-mRNA-1
chr8_3 CDS 45733957 45734154 45733957 ID=Msa1290770-mRNA-1:cds;Parent=Msa1290770-mRNA-1
chr8_3 CDS 45733600 45733812 45733600 ID=Msa1290770-mRNA-1:cds;Parent=Msa1290770-mRNA-1
chr8_3 CDS 45733401 45733489 45733401 ID=Msa1290770-mRNA-1:cds;Parent=Msa1290770-mRNA-1
chr8_3 CDS 45732395 45733114 45732395 ID=Msa1290770-mRNA-1:cds;Parent=Msa1290770-mRNA-1
chr8_3 three_prime_UTR 45732126 45732394 45732126 ID=Msa1290770-mRNA-1:three_prime_utr;Parent=Msa1290770-mRNA-1
Gene Sequence

>Msa1290770

ATGAGTAAGCAAATTTTGCTACTAGCTCTCATTCTTCATCTTCTCTTTGGAACATTCTTAGTTTCAGTTTCAGCTGCACCATCAACCACTTCACCTGCAAAACTTGTTTCTGGGTTTCTCTCCAATGCTGTTCCTGCTTTTTCTAAATGGGTTTGGTCCCTTAAAGCTACCACCAAAACTGGGGTTTTGAGCAAATCAATGATGAAGTTTGAGAGTGGTTACAATGTGGAAACTGTGTTTGATGGAAGTAAGCTTGGAATTGAGCCTTATGCTGTTGAGGTTTTGCATAATGGGGAGCTTCTTATTCTTGATTCTGCTAATAGTAACCTTTACAGAATCTCTTCATCACTCTCTTTGTATAGCAGACCGAAGCTGGTAGCTGGATCAGCTGAAGGATATTCTGGACATGTTGATGGGAGGCTCAGGGAGGCTAGGATGAACCATCCAAAGGGGATAACTGTTGATGACCGAGGAAATATTTATGTTGCAGATACTGCAAATATGGCAATTAGGAAAATTAGTGATTCGGGTATTTTTCTTCATCCTTTCCCTCTTGGGGTCACAACAATTGCTGGAGGAAAATGGAGCCGTGGAGGGGGCCACGTTGATGGACCAAGTGAAGAAGCTAAATTTTCTGATGACTTTGATGTGGTTTATGTTGGAAGTAGTTGTTCCCTGCTTGTTGTAGACAGAGGAAACCAAGCCATTAGGGAGATCCAACTCCACTTTGATGATTGTGCATATCGATATGGCAGTGATTTCCCTCTTGGAATTGCAATGCTTGTTGGGGCTGGTTTCTTTGGTTATATGCTGGCATTGCTGCAGCGTAGGCTCGGTACAATTGTAGAATCTCAGGATGCTCAGGTTCCACTAACAGTAATGCCTTCTGTTTCTCAAACTGCATATCAAAAGCCCTTGAAATCTGTAAGGCCTCCATTGATTCCATCAGAATATGAACCCGAAAAGCAGGAAGAAAGTTTCTTTGGATCTCTTGGTAAGCTTCTTGCGAATGCTGGCTCGTCAATGGTGGAGATAATGGGAGGATTATTTCCTGTTTTCAGAAGAAGACCACAGAGCTACCACCAATTTCAAAGGCAAGCACTGATCCAACAATCTCAGAAGCAAGTGAATGATTGGCCAGCACAGGAAAGTTTCGTGATTCCTCGCGAAGACGAACCACCATCTATCGACACAAGGGCACCAACCCCTCGAAAAACCTATCCTTTCATGTCGAAAGATGCAGAAAAAATTCAACAGTTGCGGCAAAGTAAAGCATTCTACAGCGGGTGGGATGGAGATCAACATCAGCAACAACAACAACCGCAACCACATCAACAACAACAGCAGCCGCAGCAGCAACAACAAAAACATCATTATCGCCATCAGTACCAATCGTCGGTCCCTCACACTTTTTATGAGCAAAGCAATGAGACAACCAATGAGGTAGTTTTTGGGGCAGTGCAGGAACAGGAGGGGAAGAAGGAATCTGTGGTCATCACACCTGTTGAATATGGAGGCTCATTGTACGAACATCGCGATTTTCGGTCTCGAATGAGTTACATGGGTTATAAGTATTGA
Protein sequence

>Msa1290770

MSKQILLLALILHLLFGTFLVSVSAAPSTTSPAKLVSGFLSNAVPAFSKWVWSLKATTKTGVLSKSMMKFESGYNVETVFDGSKLGIEPYAVEVLHNGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGRLREARMNHPKGITVDDRGNIYVADTANMAIRKISDSGIFLHPFPLGVTTIAGGKWSRGGGHVDGPSEEAKFSDDFDVVYVGSSCSLLVVDRGNQAIREIQLHFDDCAYRYGSDFPLGIAMLVGAGFFGYMLALLQRRLGTIVESQDAQVPLTVMPSVSQTAYQKPLKSVRPPLIPSEYEPEKQEESFFGSLGKLLANAGSSMVEIMGGLFPVFRRRPQSYHQFQRQALIQQSQKQVNDWPAQESFVIPREDEPPSIDTRAPTPRKTYPFMSKDAEKIQQLRQSKAFYSGWDGDQHQQQQQPQPHQQQQQPQQQQQKHHYRHQYQSSVPHTFYEQSNETTNEVVFGAVQEQEGKKESVVITPVEYGGSLYEHRDFRSRMSYMGYKY*