Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462490 | XP_013460702.1 | 96.000 | 275 | 9 | 1 | 1 | 273 | 1 | 275 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462490 | sp|Q9LHT0|TRNHF_ARATH | 68.093 | 257 | 82 | 0 | 12 | 268 | 6 | 262 | 8.48e-130 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462490 | A0A072UZ65 | 96.000 | 275 | 9 | 1 | 1 | 273 | 1 | 275 | 0.0 | 538 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa1462490 | 0.838280 | 3.157992e-57 | -8.615850e-47 |
| Msa0005020 | Msa1462490 | 0.818670 | 1.736218e-52 | -8.615850e-47 |
| Msa0014770 | Msa1462490 | 0.819964 | 8.809791e-53 | -8.615850e-47 |
| Msa0025160 | Msa1462490 | 0.813557 | 2.409300e-51 | -8.615850e-47 |
| Msa0025580 | Msa1462490 | 0.806534 | 7.851220e-50 | -8.615850e-47 |
| Msa0032460 | Msa1462490 | 0.830493 | 2.846595e-55 | -8.615850e-47 |
| Msa0035270 | Msa1462490 | 0.825892 | 3.657858e-54 | -8.615850e-47 |
| Msa0035340 | Msa1462490 | 0.839506 | 1.521206e-57 | -8.615850e-47 |
| Msa0035380 | Msa1462490 | 0.840074 | 1.082477e-57 | -8.615850e-47 |
| Msa0051920 | Msa1462490 | 0.807603 | 4.661946e-50 | -8.615850e-47 |
| Msa0053070 | Msa1462490 | 0.803228 | 3.852665e-49 | -8.615850e-47 |
| Msa0056180 | Msa1462490 | 0.822661 | 2.102728e-53 | -8.615850e-47 |
| Msa0073120 | Msa1462490 | 0.804225 | 2.392552e-49 | -8.615850e-47 |
| Msa0098410 | Msa1462490 | 0.813287 | 2.762944e-51 | -8.615850e-47 |
| Msa1349690 | Msa1462490 | 0.810987 | 8.771518e-51 | -8.615850e-47 |
| Msa1358290 | Msa1462490 | 0.800530 | 1.380201e-48 | -8.615850e-47 |
| Msa1375280 | Msa1462490 | 0.810301 | 1.233562e-50 | -8.615850e-47 |
| Msa1375350 | Msa1462490 | 0.821923 | 3.119390e-53 | -8.615850e-47 |
| Msa1392740 | Msa1462490 | 0.811306 | 7.477106e-51 | -8.615850e-47 |
| Msa1393780 | Msa1462490 | 0.805440 | 1.333312e-49 | -8.615850e-47 |
| Msa1409410 | Msa1462490 | 0.819089 | 1.394395e-52 | -8.615850e-47 |
| Msa0606100 | Msa1462490 | 0.815765 | 7.817473e-52 | -8.615850e-47 |
| Msa0606580 | Msa1462490 | 0.806500 | 7.981069e-50 | -8.615850e-47 |
| Msa0607800 | Msa1462490 | 0.806107 | 9.659424e-50 | -8.615850e-47 |
| Msa0615630 | Msa1462490 | 0.812937 | 3.296687e-51 | -8.615850e-47 |
| Msa0621710 | Msa1462490 | 0.800981 | 1.116956e-48 | -8.615850e-47 |
| Msa0647050 | Msa1462490 | 0.808368 | 3.204830e-50 | -8.615850e-47 |
| Msa0647280 | Msa1462490 | 0.806571 | 7.709405e-50 | -8.615850e-47 |
| Msa0648040 | Msa1462490 | 0.807032 | 6.162956e-50 | -8.615850e-47 |
| Msa0658640 | Msa1462490 | 0.801186 | 1.014107e-48 | -8.615850e-47 |
| Msa0660370 | Msa1462490 | 0.810250 | 1.265663e-50 | -8.615850e-47 |
| Msa0668900 | Msa1462490 | 0.815980 | 6.999605e-52 | -8.615850e-47 |
| Msa0686800 | Msa1462490 | 0.805982 | 1.026314e-49 | -8.615850e-47 |
| Msa0687090 | Msa1462490 | 0.821817 | 3.299557e-53 | -8.615850e-47 |
| Msa0688380 | Msa1462490 | 0.807173 | 5.752867e-50 | -8.615850e-47 |
| Msa0690740 | Msa1462490 | 0.811057 | 8.467507e-51 | -8.615850e-47 |
| Msa0698730 | Msa1462490 | 0.816108 | 6.554334e-52 | -8.615850e-47 |
| Msa0703600 | Msa1462490 | 0.816824 | 4.530350e-52 | -8.615850e-47 |
| Msa0709200 | Msa1462490 | 0.817925 | 2.560928e-52 | -8.615850e-47 |
| Msa0709440 | Msa1462490 | 0.815724 | 7.981844e-52 | -8.615850e-47 |
| Msa0735780 | Msa1462490 | 0.806508 | 7.950937e-50 | -8.615850e-47 |
| Msa0747000 | Msa1462490 | 0.809117 | 2.217563e-50 | -8.615850e-47 |
| Msa0747740 | Msa1462490 | 0.818205 | 2.213188e-52 | -8.615850e-47 |
| Msa0773630 | Msa1462490 | 0.816297 | 5.946922e-52 | -8.615850e-47 |
| Msa0780910 | Msa1462490 | 0.818849 | 1.581029e-52 | -8.615850e-47 |
| Msa0798080 | Msa1462490 | 0.819312 | 1.240577e-52 | -8.615850e-47 |
| Msa0815920 | Msa1462490 | 0.815182 | 1.053710e-51 | -8.615850e-47 |
| Msa0821160 | Msa1462490 | 0.823546 | 1.306824e-53 | -8.615850e-47 |
| Msa0836330 | Msa1462490 | 0.801556 | 8.514818e-49 | -8.615850e-47 |
| Msa0838240 | Msa1462490 | 0.859325 | 4.473633e-63 | -8.615850e-47 |
| Msa0121330 | Msa1462490 | 0.806897 | 6.580102e-50 | -8.615850e-47 |
| Msa0126210 | Msa1462490 | 0.810232 | 1.277126e-50 | -8.615850e-47 |
| Msa0146650 | Msa1462490 | 0.850224 | 1.949788e-60 | -8.615850e-47 |
| Msa0154620 | Msa1462490 | 0.817472 | 3.239346e-52 | -8.615850e-47 |
| Msa0173290 | Msa1462490 | 0.831105 | 2.015058e-55 | -8.615850e-47 |
| Msa0176060 | Msa1462490 | 0.809398 | 1.929515e-50 | -8.615850e-47 |
| Msa0180650 | Msa1462490 | 0.810990 | 8.757731e-51 | -8.615850e-47 |
| Msa0185960 | Msa1462490 | 0.826089 | 3.285131e-54 | -8.615850e-47 |
| Msa0213610 | Msa1462490 | 0.803613 | 3.206737e-49 | -8.615850e-47 |
| Msa1226520 | Msa1462490 | 0.802238 | 6.169617e-49 | -8.615850e-47 |
| Msa1240770 | Msa1462490 | 0.805466 | 1.316768e-49 | -8.615850e-47 |
| Msa1262590 | Msa1462490 | 0.817054 | 4.022773e-52 | -8.615850e-47 |
| Msa1263780 | Msa1462490 | 0.801747 | 7.782822e-49 | -8.615850e-47 |
| Msa1290730 | Msa1462490 | 0.821218 | 4.537139e-53 | -8.615850e-47 |
| Msa1290770 | Msa1462490 | 0.813227 | 2.847920e-51 | -8.615850e-47 |
| Msa1306340 | Msa1462490 | 0.837603 | 4.715287e-57 | -8.615850e-47 |
| Msa1306570 | Msa1462490 | 0.817553 | 3.106025e-52 | -8.615850e-47 |
| Msa1315130 | Msa1462490 | 0.823244 | 1.537577e-53 | -8.615850e-47 |
| Msa1315160 | Msa1462490 | 0.812755 | 3.614527e-51 | -8.615850e-47 |
| Msa1333500 | Msa1462490 | 0.806223 | 9.131982e-50 | -8.615850e-47 |
| Msa0367520 | Msa1462490 | 0.820535 | 6.517200e-53 | -8.615850e-47 |
| Msa0422050 | Msa1462490 | 0.803852 | 2.860571e-49 | -8.615850e-47 |
| Msa0430300 | Msa1462490 | 0.800862 | 1.180891e-48 | -8.615850e-47 |
| Msa0430480 | Msa1462490 | 0.800383 | 1.478685e-48 | -8.615850e-47 |
| Msa0468700 | Msa1462490 | 0.833294 | 5.794099e-56 | -8.615850e-47 |
| Msa0476280 | Msa1462490 | 0.802969 | 4.358342e-49 | -8.615850e-47 |
| Msa0481890 | Msa1462490 | 0.813893 | 2.032827e-51 | -8.615850e-47 |
| Msa1003740 | Msa1462490 | 0.814834 | 1.259065e-51 | -8.615850e-47 |
| Msa1003800 | Msa1462490 | 0.816521 | 5.297540e-52 | -8.615850e-47 |
| Msa1003930 | Msa1462490 | 0.814075 | 1.853019e-51 | -8.615850e-47 |
| Msa1011460 | Msa1462490 | 0.815117 | 1.089544e-51 | -8.615850e-47 |
| Msa1024180 | Msa1462490 | 0.825027 | 5.862486e-54 | -8.615850e-47 |
| Msa1033920 | Msa1462490 | 0.807688 | 4.474131e-50 | -8.615850e-47 |
| Msa1034600 | Msa1462490 | 0.836283 | 1.024818e-56 | -8.615850e-47 |
| Msa1042160 | Msa1462490 | 0.840607 | 7.852162e-58 | -8.615850e-47 |
| Msa1042190 | Msa1462490 | 0.843362 | 1.467864e-58 | -8.615850e-47 |
| Msa1074370 | Msa1462490 | 0.823925 | 1.065296e-53 | -8.615850e-47 |
| Msa1077990 | Msa1462490 | 0.807908 | 4.017386e-50 | -8.615850e-47 |
| Msa1078880 | Msa1462490 | 0.823134 | 1.630755e-53 | -8.615850e-47 |
| Msa1078970 | Msa1462490 | 0.811511 | 6.751057e-51 | -8.615850e-47 |
| Msa1080000 | Msa1462490 | 0.830502 | 2.832196e-55 | -8.615850e-47 |
| Msa1084530 | Msa1462490 | 0.817659 | 2.940271e-52 | -8.615850e-47 |
| Msa1104110 | Msa1462490 | 0.822244 | 2.627622e-53 | -8.615850e-47 |
| Msa0293040 | Msa1462490 | 0.815551 | 8.726623e-52 | -8.615850e-47 |
| Msa0307280 | Msa1462490 | 0.800598 | 1.336761e-48 | -8.615850e-47 |
| Msa1108020 | Msa1462490 | 0.821271 | 4.412895e-53 | -8.615850e-47 |
| Msa1125820 | Msa1462490 | 0.819669 | 1.028629e-52 | -8.615850e-47 |
| Msa1125990 | Msa1462490 | 0.820367 | 7.119758e-53 | -8.615850e-47 |
| Msa1132530 | Msa1462490 | 0.819398 | 1.186212e-52 | -8.615850e-47 |
| Msa1147700 | Msa1462490 | 0.811596 | 6.469088e-51 | -8.615850e-47 |
| Msa1152120 | Msa1462490 | 0.817961 | 2.512573e-52 | -8.615850e-47 |
| Msa1160910 | Msa1462490 | 0.815246 | 1.020055e-51 | -8.615850e-47 |
| Msa1161970 | Msa1462490 | 0.822703 | 2.055191e-53 | -8.615850e-47 |
| Msa1163180 | Msa1462490 | 0.800767 | 1.235197e-48 | -8.615850e-47 |
| Msa1167470 | Msa1462490 | 0.857968 | 1.136748e-62 | -8.615850e-47 |
| Msa1169190 | Msa1462490 | 0.824797 | 6.645116e-54 | -8.615850e-47 |
| Msa1171290 | Msa1462490 | 0.811866 | 5.651765e-51 | -8.615850e-47 |
| Msa1171780 | Msa1462490 | 0.811265 | 7.634273e-51 | -8.615850e-47 |
| Msa1214350 | Msa1462490 | 0.808014 | 3.812983e-50 | -8.615850e-47 |
| Msa1216090 | Msa1462490 | 0.845996 | 2.865945e-59 | -8.615850e-47 |
| Msa1216110 | Msa1462490 | 0.830734 | 2.484902e-55 | -8.615850e-47 |
| Msa1216340 | Msa1462490 | 0.852336 | 4.936614e-61 | -8.615850e-47 |
| Msa0483910 | Msa1462490 | 0.817837 | 2.681194e-52 | -8.615850e-47 |
| Msa0484570 | Msa1462490 | 0.806967 | 6.359991e-50 | -8.615850e-47 |
| Msa0514580 | Msa1462490 | 0.821961 | 3.056950e-53 | -8.615850e-47 |
| Msa0517250 | Msa1462490 | 0.801169 | 1.022026e-48 | -8.615850e-47 |
| Msa0532050 | Msa1462490 | 0.818528 | 1.870279e-52 | -8.615850e-47 |
| Msa0550590 | Msa1462490 | 0.802702 | 4.948535e-49 | -8.615850e-47 |
| Msa0561560 | Msa1462490 | 0.801882 | 7.299637e-49 | -8.615850e-47 |
| Msa0567170 | Msa1462490 | 0.823519 | 1.326200e-53 | -8.615850e-47 |
| Msa0571620 | Msa1462490 | 0.808881 | 2.490352e-50 | -8.615850e-47 |
| Msa0590200 | Msa1462490 | 0.820757 | 5.792838e-53 | -8.615850e-47 |
| Msa0863620 | Msa1462490 | 0.803298 | 3.726475e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462490 | MtrunA17_Chr3g0112141 | 96.000 | 275 | 9 | 1 | 1 | 273 | 1 | 275 | 0.0 | 538 |
| Msa1462490 | MtrunA17_Chr3g0112171 | 86.667 | 270 | 36 | 0 | 1 | 270 | 1 | 270 | 6.26e-171 | 473 |
| Msa1462490 | MtrunA17_Chr3g0112151 | 83.333 | 264 | 44 | 0 | 1 | 264 | 72 | 335 | 1.71e-164 | 459 |
| Msa1462490 | MtrunA17_Chr3g0112261 | 72.222 | 270 | 74 | 1 | 2 | 270 | 5 | 274 | 3.40e-145 | 408 |
| Msa1462490 | MtrunA17_Chr3g0112271 | 70.956 | 272 | 77 | 1 | 1 | 270 | 1 | 272 | 3.24e-141 | 397 |
| Msa1462490 | MtrunA17_Chr4g0032141 | 60.853 | 258 | 101 | 0 | 12 | 269 | 53 | 310 | 1.62e-119 | 344 |
| Msa1462490 | MtrunA17_Chr7g0239481 | 58.431 | 255 | 102 | 1 | 9 | 259 | 9 | 263 | 1.28e-104 | 305 |
| Msa1462490 | MtrunA17_Chr7g0239451 | 57.308 | 260 | 107 | 1 | 6 | 261 | 7 | 266 | 7.94e-103 | 300 |
| Msa1462490 | MtrunA17_Chr7g0239491 | 57.812 | 256 | 105 | 2 | 9 | 261 | 9 | 264 | 1.97e-100 | 294 |
| Msa1462490 | MtrunA17_Chr4g0032181 | 59.483 | 232 | 94 | 0 | 31 | 262 | 17 | 248 | 2.82e-100 | 293 |
| Msa1462490 | MtrunA17_Chr7g0239501 | 56.981 | 265 | 109 | 3 | 1 | 260 | 1 | 265 | 6.07e-100 | 293 |
| Msa1462490 | MtrunA17_Chr7g0239511 | 55.094 | 265 | 114 | 2 | 1 | 260 | 1 | 265 | 2.96e-99 | 291 |
| Msa1462490 | MtrunA17_Chr7g0239461 | 49.807 | 259 | 78 | 3 | 6 | 261 | 7 | 216 | 5.64e-77 | 233 |
| Msa1462490 | MtrunA17_Chr4g0075531 | 33.333 | 249 | 155 | 6 | 15 | 259 | 7 | 248 | 1.32e-34 | 125 |
| Msa1462490 | MtrunA17_Chr3g0112161 | 59.292 | 113 | 16 | 2 | 123 | 234 | 1 | 84 | 3.71e-32 | 114 |
| Msa1462490 | MtrunA17_Chr3g0112321 | 57.576 | 99 | 26 | 2 | 147 | 242 | 2 | 87 | 4.50e-31 | 111 |
| Msa1462490 | MtrunA17_Chr7g0259531 | 33.463 | 257 | 151 | 10 | 15 | 259 | 11 | 259 | 4.72e-29 | 111 |
| Msa1462490 | MtrunA17_Chr7g0259521 | 32.937 | 252 | 159 | 8 | 15 | 259 | 6 | 254 | 8.21e-29 | 110 |
| Msa1462490 | MtrunA17_Chr3g0122901 | 30.328 | 244 | 159 | 5 | 21 | 259 | 81 | 318 | 1.82e-27 | 108 |
| Msa1462490 | MtrunA17_Chr7g0244061 | 31.095 | 283 | 157 | 8 | 8 | 261 | 22 | 295 | 1.77e-26 | 105 |
| Msa1462490 | MtrunA17_Chr7g0252031 | 30.996 | 271 | 165 | 8 | 9 | 261 | 22 | 288 | 1.27e-25 | 102 |
| Msa1462490 | MtrunA17_Chr4g0028911 | 29.615 | 260 | 170 | 9 | 15 | 264 | 11 | 267 | 8.48e-24 | 97.4 |
| Msa1462490 | MtrunA17_Chr4g0028921 | 29.231 | 260 | 171 | 9 | 15 | 264 | 11 | 267 | 3.00e-23 | 95.9 |
| Msa1462490 | MtrunA17_Chr7g0268591 | 28.302 | 265 | 175 | 7 | 7 | 261 | 26 | 285 | 2.74e-22 | 93.6 |
| Msa1462490 | MtrunA17_Chr4g0044131 | 29.572 | 257 | 161 | 9 | 15 | 260 | 8 | 255 | 3.45e-21 | 90.1 |
| Msa1462490 | MtrunA17_Chr4g0040371 | 30.769 | 260 | 161 | 10 | 15 | 261 | 19 | 272 | 1.89e-20 | 88.6 |
| Msa1462490 | MtrunA17_Chr8g0357481 | 27.863 | 262 | 162 | 7 | 15 | 259 | 14 | 265 | 2.04e-19 | 85.9 |
| Msa1462490 | MtrunA17_Chr1g0182511 | 29.688 | 256 | 163 | 9 | 15 | 259 | 14 | 263 | 2.21e-19 | 85.1 |
| Msa1462490 | MtrunA17_Chr4g0026001 | 29.615 | 260 | 164 | 10 | 15 | 264 | 14 | 264 | 2.39e-19 | 85.1 |
| Msa1462490 | MtrunA17_Chr4g0074511 | 28.195 | 266 | 179 | 6 | 6 | 262 | 31 | 293 | 4.10e-19 | 85.1 |
| Msa1462490 | MtrunA17_Chr6g0459261 | 28.571 | 266 | 172 | 10 | 5 | 259 | 15 | 273 | 3.33e-18 | 82.0 |
| Msa1462490 | MtrunA17_Chr3g0084871 | 29.520 | 271 | 166 | 10 | 7 | 260 | 8 | 270 | 1.03e-17 | 80.9 |
| Msa1462490 | MtrunA17_Chr0c30g0494101 | 28.464 | 267 | 175 | 8 | 6 | 262 | 31 | 291 | 1.38e-17 | 80.5 |
| Msa1462490 | MtrunA17_Chr6g0459351 | 29.412 | 272 | 168 | 11 | 1 | 259 | 1 | 261 | 1.57e-17 | 80.1 |
| Msa1462490 | MtrunA17_Chr6g0459301 | 28.679 | 265 | 169 | 10 | 7 | 259 | 6 | 262 | 1.71e-17 | 80.1 |
| Msa1462490 | MtrunA17_Chr2g0324021 | 27.237 | 257 | 175 | 7 | 11 | 260 | 2 | 253 | 2.65e-17 | 79.3 |
| Msa1462490 | MtrunA17_Chr7g0266981 | 29.434 | 265 | 151 | 11 | 15 | 260 | 13 | 260 | 5.73e-17 | 78.6 |
| Msa1462490 | MtrunA17_Chr8g0381191 | 31.683 | 202 | 111 | 5 | 17 | 202 | 47 | 237 | 6.49e-17 | 79.0 |
| Msa1462490 | MtrunA17_Chr7g0267011 | 29.570 | 186 | 124 | 4 | 15 | 197 | 8 | 189 | 6.90e-17 | 77.0 |
| Msa1462490 | MtrunA17_Chr4g0044111 | 29.434 | 265 | 151 | 11 | 15 | 260 | 13 | 260 | 9.51e-17 | 78.2 |
| Msa1462490 | MtrunA17_Chr4g0025981 | 27.203 | 261 | 172 | 8 | 16 | 264 | 42 | 296 | 1.97e-16 | 77.8 |
| Msa1462490 | MtrunA17_Chr7g0272961 | 28.125 | 256 | 173 | 7 | 15 | 262 | 40 | 292 | 2.51e-16 | 77.0 |
| Msa1462490 | MtrunA17_Chr7g0267001 | 27.451 | 255 | 151 | 9 | 15 | 260 | 8 | 237 | 4.37e-16 | 75.9 |
| Msa1462490 | MtrunA17_Chr4g0025971 | 26.255 | 259 | 174 | 9 | 15 | 264 | 14 | 264 | 4.39e-16 | 76.3 |
| Msa1462490 | MtrunA17_Chr6g0459281 | 27.737 | 274 | 176 | 10 | 5 | 265 | 3 | 267 | 1.71e-15 | 74.3 |
| Msa1462490 | MtrunA17_Chr7g0270441 | 28.676 | 272 | 172 | 10 | 11 | 269 | 2 | 264 | 1.77e-15 | 74.3 |
| Msa1462490 | MtrunA17_Chr6g0459271 | 27.820 | 266 | 174 | 8 | 5 | 259 | 3 | 261 | 3.28e-15 | 73.6 |
| Msa1462490 | MtrunA17_Chr6g0459331 | 27.273 | 264 | 178 | 8 | 5 | 259 | 3 | 261 | 4.72e-15 | 73.2 |
| Msa1462490 | MtrunA17_Chr7g0266891 | 27.799 | 259 | 163 | 10 | 15 | 260 | 7 | 254 | 5.59e-14 | 70.1 |
| Msa1462490 | MtrunA17_Chr7g0270451 | 26.616 | 263 | 185 | 6 | 12 | 269 | 3 | 262 | 7.25e-14 | 69.7 |
| Msa1462490 | MtrunA17_Chr1g0191751 | 26.459 | 257 | 178 | 6 | 15 | 263 | 101 | 354 | 7.44e-14 | 70.5 |
| Msa1462490 | MtrunA17_Chr3g0131521 | 32.653 | 147 | 97 | 2 | 8 | 154 | 25 | 169 | 2.79e-13 | 68.6 |
| Msa1462490 | MtrunA17_Chr1g0171831 | 24.898 | 245 | 168 | 10 | 21 | 251 | 20 | 262 | 3.41e-13 | 67.8 |
| Msa1462490 | MtrunA17_Chr8g0355281 | 27.273 | 187 | 129 | 4 | 15 | 195 | 69 | 254 | 3.69e-13 | 68.6 |
| Msa1462490 | MtrunA17_Chr3g0123251 | 27.723 | 202 | 123 | 4 | 17 | 204 | 53 | 245 | 4.39e-13 | 68.2 |
| Msa1462490 | MtrunA17_Chr4g0038121 | 25.926 | 297 | 179 | 9 | 15 | 273 | 91 | 384 | 1.64e-11 | 63.9 |
| Msa1462490 | MtrunA17_Chr7g0249571 | 26.776 | 183 | 124 | 4 | 22 | 197 | 45 | 224 | 2.62e-11 | 62.8 |
| Msa1462490 | MtrunA17_Chr4g0076931 | 27.219 | 169 | 120 | 2 | 19 | 184 | 10 | 178 | 5.36e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462490 | AT5G06060.1 | 68.093 | 257 | 82 | 0 | 12 | 268 | 6 | 262 | 8.62e-131 | 371 |
| Msa1462490 | AT2G29150.1 | 60.755 | 265 | 102 | 2 | 1 | 264 | 1 | 264 | 8.53e-116 | 333 |
| Msa1462490 | AT2G29290.2 | 61.479 | 257 | 97 | 1 | 12 | 266 | 4 | 260 | 6.25e-115 | 331 |
| Msa1462490 | AT2G29350.1 | 60.377 | 265 | 102 | 2 | 1 | 264 | 1 | 263 | 4.33e-114 | 329 |
| Msa1462490 | AT2G29260.1 | 61.176 | 255 | 99 | 0 | 12 | 266 | 65 | 319 | 6.98e-114 | 330 |
| Msa1462490 | AT2G29360.1 | 59.245 | 265 | 107 | 1 | 1 | 264 | 1 | 265 | 5.57e-112 | 324 |
| Msa1462490 | AT1G07440.1 | 58.555 | 263 | 106 | 2 | 6 | 266 | 3 | 264 | 1.64e-110 | 320 |
| Msa1462490 | AT2G29370.1 | 56.981 | 265 | 113 | 1 | 1 | 264 | 1 | 265 | 1.85e-107 | 312 |
| Msa1462490 | AT2G29340.2 | 58.301 | 259 | 106 | 1 | 12 | 268 | 4 | 262 | 1.24e-106 | 310 |
| Msa1462490 | AT2G29340.1 | 58.755 | 257 | 104 | 1 | 12 | 266 | 4 | 260 | 3.43e-106 | 310 |
| Msa1462490 | AT2G30670.1 | 58.498 | 253 | 105 | 0 | 12 | 264 | 4 | 256 | 3.76e-105 | 306 |
| Msa1462490 | AT1G07450.1 | 58.893 | 253 | 103 | 1 | 12 | 264 | 5 | 256 | 5.10e-105 | 306 |
| Msa1462490 | AT2G29330.1 | 59.690 | 258 | 100 | 3 | 12 | 266 | 4 | 260 | 9.10e-105 | 305 |
| Msa1462490 | AT2G29310.1 | 57.708 | 253 | 107 | 0 | 12 | 264 | 4 | 256 | 1.30e-102 | 300 |
| Msa1462490 | AT2G29290.1 | 60.338 | 237 | 92 | 1 | 32 | 266 | 7 | 243 | 2.48e-102 | 298 |
| Msa1462490 | AT2G29320.1 | 57.977 | 257 | 105 | 2 | 13 | 266 | 11 | 267 | 4.46e-101 | 296 |
| Msa1462490 | AT2G29300.1 | 56.202 | 258 | 110 | 2 | 12 | 266 | 4 | 261 | 1.20e-99 | 292 |
| Msa1462490 | AT2G29300.2 | 56.400 | 250 | 108 | 1 | 12 | 260 | 4 | 253 | 1.19e-96 | 285 |
| Msa1462490 | AT2G29350.3 | 59.735 | 226 | 88 | 2 | 40 | 264 | 2 | 225 | 2.84e-95 | 280 |
| Msa1462490 | AT2G29320.2 | 56.904 | 239 | 100 | 2 | 31 | 266 | 11 | 249 | 2.86e-90 | 268 |
| Msa1462490 | AT2G29310.2 | 56.410 | 234 | 102 | 0 | 31 | 264 | 21 | 254 | 4.11e-90 | 268 |
| Msa1462490 | AT2G29350.2 | 60.194 | 206 | 82 | 0 | 1 | 206 | 1 | 206 | 3.39e-88 | 262 |
| Msa1462490 | AT2G29340.3 | 58.247 | 194 | 81 | 0 | 12 | 205 | 4 | 197 | 5.62e-79 | 238 |
| Msa1462490 | AT2G29340.4 | 58.247 | 194 | 81 | 0 | 12 | 205 | 4 | 197 | 5.62e-79 | 238 |
| Msa1462490 | AT2G29310.3 | 57.949 | 195 | 82 | 0 | 12 | 206 | 4 | 198 | 1.80e-77 | 234 |
| Msa1462490 | AT2G29320.3 | 58.639 | 191 | 78 | 1 | 13 | 202 | 11 | 201 | 2.26e-75 | 229 |
| Msa1462490 | AT1G07440.2 | 56.886 | 167 | 72 | 0 | 6 | 172 | 3 | 169 | 1.47e-65 | 202 |
| Msa1462490 | AT2G29310.4 | 56.250 | 176 | 77 | 0 | 31 | 206 | 21 | 196 | 1.09e-64 | 201 |
| Msa1462490 | AT2G29170.1 | 60.784 | 102 | 39 | 1 | 1 | 101 | 1 | 102 | 2.08e-35 | 123 |
| Msa1462490 | AT4G05530.1 | 33.740 | 246 | 158 | 5 | 15 | 259 | 9 | 250 | 2.75e-34 | 125 |
| Msa1462490 | AT5G18210.1 | 33.716 | 261 | 158 | 8 | 10 | 259 | 3 | 259 | 2.26e-31 | 117 |
| Msa1462490 | AT3G03980.1 | 32.046 | 259 | 159 | 7 | 15 | 259 | 14 | 269 | 1.78e-29 | 112 |
| Msa1462490 | AT4G13180.1 | 33.083 | 266 | 163 | 10 | 4 | 259 | 1 | 261 | 4.86e-29 | 111 |
| Msa1462490 | AT1G24360.1 | 30.204 | 245 | 158 | 6 | 21 | 259 | 80 | 317 | 1.81e-27 | 108 |
| Msa1462490 | AT5G18210.2 | 32.567 | 261 | 148 | 9 | 10 | 259 | 3 | 246 | 1.09e-26 | 105 |
| Msa1462490 | AT3G04000.1 | 33.086 | 269 | 160 | 9 | 6 | 258 | 5 | 269 | 5.71e-24 | 98.2 |
| Msa1462490 | AT3G55310.1 | 28.295 | 258 | 174 | 7 | 15 | 263 | 17 | 272 | 9.05e-23 | 95.1 |
| Msa1462490 | AT3G55290.1 | 28.295 | 258 | 174 | 7 | 15 | 263 | 18 | 273 | 1.50e-22 | 94.4 |
| Msa1462490 | AT3G55290.2 | 28.295 | 258 | 174 | 7 | 15 | 263 | 17 | 272 | 1.54e-22 | 94.4 |
| Msa1462490 | AT1G54870.1 | 31.128 | 257 | 166 | 6 | 15 | 263 | 82 | 335 | 1.19e-21 | 92.8 |
| Msa1462490 | AT1G54870.2 | 31.128 | 257 | 166 | 6 | 15 | 263 | 84 | 337 | 1.37e-21 | 92.8 |
| Msa1462490 | AT3G46170.1 | 28.682 | 258 | 173 | 7 | 15 | 263 | 26 | 281 | 1.55e-21 | 92.0 |
| Msa1462490 | AT1G63380.3 | 27.473 | 273 | 186 | 6 | 1 | 263 | 1 | 271 | 1.57e-21 | 91.7 |
| Msa1462490 | AT3G26760.1 | 28.839 | 267 | 170 | 7 | 8 | 260 | 30 | 290 | 1.92e-21 | 91.7 |
| Msa1462490 | AT1G63380.4 | 27.799 | 259 | 175 | 6 | 15 | 263 | 19 | 275 | 1.97e-21 | 91.7 |
| Msa1462490 | AT1G62610.1 | 27.413 | 259 | 176 | 6 | 15 | 263 | 14 | 270 | 2.06e-21 | 91.3 |
| Msa1462490 | AT1G63380.1 | 27.799 | 259 | 175 | 6 | 15 | 263 | 17 | 273 | 2.12e-21 | 91.3 |
| Msa1462490 | AT1G62610.3 | 27.106 | 273 | 187 | 6 | 1 | 263 | 1 | 271 | 2.18e-21 | 91.3 |
| Msa1462490 | AT1G62610.2 | 27.413 | 259 | 176 | 6 | 15 | 263 | 13 | 269 | 2.24e-21 | 91.3 |
| Msa1462490 | AT1G62610.4 | 27.413 | 259 | 176 | 6 | 15 | 263 | 19 | 275 | 2.27e-21 | 91.3 |
| Msa1462490 | AT1G63380.2 | 27.799 | 259 | 175 | 6 | 15 | 263 | 22 | 278 | 2.41e-21 | 91.3 |
| Msa1462490 | AT2G17845.1 | 27.481 | 262 | 176 | 7 | 15 | 264 | 47 | 306 | 7.69e-21 | 90.5 |
| Msa1462490 | AT2G47130.1 | 29.688 | 256 | 169 | 7 | 11 | 260 | 2 | 252 | 7.51e-20 | 86.7 |
| Msa1462490 | AT2G47120.1 | 28.195 | 266 | 171 | 11 | 11 | 267 | 2 | 256 | 3.20e-19 | 85.1 |
| Msa1462490 | AT2G47120.2 | 28.244 | 262 | 168 | 11 | 15 | 267 | 7 | 257 | 4.77e-19 | 84.3 |
| Msa1462490 | AT3G05260.1 | 30.469 | 256 | 166 | 6 | 15 | 262 | 37 | 288 | 7.90e-19 | 84.3 |
| Msa1462490 | AT1G52340.1 | 30.451 | 266 | 157 | 10 | 15 | 260 | 18 | 275 | 4.28e-18 | 82.4 |
| Msa1462490 | AT3G12800.1 | 25.490 | 255 | 178 | 6 | 15 | 259 | 10 | 262 | 5.20e-18 | 82.4 |
| Msa1462490 | AT3G51680.1 | 26.692 | 266 | 173 | 7 | 15 | 260 | 32 | 295 | 6.31e-17 | 79.3 |
| Msa1462490 | AT3G42960.1 | 29.845 | 258 | 157 | 9 | 20 | 261 | 13 | 262 | 9.98e-17 | 78.2 |
| Msa1462490 | AT3G26770.1 | 27.132 | 258 | 173 | 5 | 15 | 261 | 41 | 294 | 5.60e-16 | 76.6 |
| Msa1462490 | AT3G29260.1 | 28.405 | 257 | 171 | 7 | 11 | 260 | 2 | 252 | 1.28e-15 | 75.1 |
| Msa1462490 | AT4G03140.1 | 25.391 | 256 | 177 | 5 | 15 | 260 | 78 | 329 | 5.93e-15 | 74.3 |
| Msa1462490 | AT5G04900.1 | 30.435 | 184 | 120 | 5 | 18 | 195 | 80 | 261 | 1.32e-13 | 70.5 |
| Msa1462490 | AT1G49670.1 | 28.910 | 211 | 129 | 7 | 17 | 211 | 6 | 211 | 4.93e-13 | 69.3 |
| Msa1462490 | AT1G49670.2 | 28.910 | 211 | 129 | 7 | 17 | 211 | 6 | 211 | 5.33e-13 | 69.3 |
| Msa1462490 | AT4G13250.1 | 26.172 | 256 | 150 | 8 | 21 | 243 | 165 | 414 | 1.33e-12 | 67.8 |
| Msa1462490 | AT3G06060.1 | 26.768 | 198 | 138 | 2 | 9 | 203 | 31 | 224 | 2.79e-12 | 66.2 |
| Msa1462490 | AT3G06060.2 | 26.768 | 198 | 138 | 2 | 9 | 203 | 48 | 241 | 3.02e-12 | 66.2 |
| Msa1462490 | AT1G67730.1 | 25.463 | 216 | 128 | 6 | 5 | 204 | 45 | 243 | 3.10e-12 | 66.2 |
| Msa1462490 | AT1G10310.1 | 30.539 | 167 | 113 | 3 | 19 | 184 | 19 | 183 | 8.29e-12 | 63.9 |
| Msa1462490 | AT5G65205.1 | 28.090 | 178 | 121 | 4 | 21 | 197 | 12 | 183 | 6.60e-11 | 62.0 |
Find 65 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTACACGCTGCGTATA+TGG | 0.258151 | tig0042325:+1819 | Msa1462490:intergenic |
| AATGGGCAAAAGACAATATA+AGG | 0.317797 | tig0042325:-1657 | Msa1462490:CDS |
| GGACAAGTTATTTCTGTTGA+TGG | 0.321935 | tig0042325:-1285 | Msa1462490:CDS |
| TATCCTCTTCTTAAAGAATC+TGG | 0.324082 | tig0042325:-1901 | Msa1462490:CDS |
| ATTCACTCGATTAAGATTAG+TGG | 0.368279 | tig0042325:-934 | Msa1462490:three_prime_UTR |
| GTAGAGGAACTTGCTGAGTT+TGG | 0.369806 | tig0042325:-2807 | Msa1462490:CDS |
| AAAGGGTCACATACTCTTGC+TGG | 0.388378 | tig0042325:-963 | Msa1462490:three_prime_UTR |
| GGAAGACACTTCATGTGTTT+CGG | 0.394739 | tig0042325:+1350 | Msa1462490:intergenic |
| TCCGTTGTATACTCAATTGT+TGG | 0.398000 | tig0042325:+1985 | Msa1462490:intergenic |
| CTATAGTGTACACTTGTTCT+AGG | 0.398286 | tig0042325:-2782 | Msa1462490:CDS |
| CTTCTTAAAGAATCTGGAAA+TGG | 0.409640 | tig0042325:-1895 | Msa1462490:CDS |
| AGAAATAGTCTTATGTTCTA+TGG | 0.413199 | tig0042325:+1118 | Msa1462490:intergenic |
| GATATGTCAGTTGGCATAGA+TGG | 0.418094 | tig0042325:+1920 | Msa1462490:intergenic |
| TATGTAGTATCTGTATCATT+AGG | 0.427761 | tig0042325:+1011 | Msa1462490:intergenic |
| GATGGAGGATTTACTGCAAA+TGG | 0.433393 | tig0042325:-1267 | Msa1462490:CDS |
| AAAATTGATGAGTATTAACT+TGG | 0.439582 | tig0042325:-1953 | Msa1462490:CDS |
| ATCACTTCTTATGATCATGC+TGG | 0.440165 | tig0042325:+1236 | Msa1462490:intergenic |
| CATGATGAGATGCTTGATAA+AGG | 0.466551 | tig0042325:-1041 | Msa1462490:three_prime_UTR |
| CTCGTCACCGGTGGAACTCG+TGG | 0.467504 | tig0042325:-2846 | Msa1462490:CDS |
| TATCTCGTACACCGATAAAA+CGG | 0.472351 | tig0042325:-1377 | Msa1462490:CDS |
| TTGAATGAGTGGAAGGAGAA+AGG | 0.480371 | tig0042325:-2735 | Msa1462490:CDS |
| TCTCTGACAAACGTAGGTTC+TGG | 0.495804 | tig0042325:-1844 | Msa1462490:CDS |
| AACATTACATAATCGTTAAG+TGG | 0.496146 | tig0042325:+1601 | Msa1462490:intergenic |
| TGAGCTTAGGTAAACAATGT+TGG | 0.501292 | tig0042325:-2024 | Msa1462490:intron |
| ACCGGTGGAACTCGTGGGAT+CGG | 0.503309 | tig0042325:-2840 | Msa1462490:CDS |
| TTTCCAGATTCTTTAAGAAG+AGG | 0.503369 | tig0042325:+1898 | Msa1462490:intergenic |
| TTGCAAGTGGAAAGCTCAAA+GGG | 0.506249 | tig0042325:-980 | Msa1462490:three_prime_UTR |
| AATAACTTGTCCAGTGATGT+AGG | 0.517499 | tig0042325:+1296 | Msa1462490:intergenic |
| TTCTCAGTGTTAGCAAGATA+AGG | 0.518622 | tig0042325:-2943 | Msa1462490:five_prime_UTR |
| ACCATATACGCAGCGTGTAA+AGG | 0.519622 | tig0042325:-1820 | Msa1462490:intron |
| CCAGCTGCTTCCTACATCAC+TGG | 0.520639 | tig0042325:-1306 | Msa1462490:CDS |
| TCACTTCTTATGATCATGCT+GGG | 0.528359 | tig0042325:+1237 | Msa1462490:intergenic |
| CTTGCAAGTGGAAAGCTCAA+AGG | 0.529045 | tig0042325:-981 | Msa1462490:three_prime_UTR |
| AACACATGAAGTGTCTTCCT+TGG | 0.534095 | tig0042325:-1346 | Msa1462490:CDS |
| ACATATGATATTCTTGCAAG+TGG | 0.540608 | tig0042325:-993 | Msa1462490:three_prime_UTR |
| TAAGAAGAGGATATGTCAGT+TGG | 0.546406 | tig0042325:+1911 | Msa1462490:intergenic |
| CAAGTTATTTCTGTTGATGG+AGG | 0.549415 | tig0042325:-1282 | Msa1462490:CDS |
| TCTCCTTGTTAATCATCTGA+AGG | 0.552677 | tig0042325:-1074 | Msa1462490:three_prime_UTR |
| ACCGATCCCACGAGTTCCAC+CGG | 0.553414 | tig0042325:+2839 | Msa1462490:intergenic |
| GACTTCTTCTTCTCAAAGAG+AGG | 0.564516 | tig0042325:-2682 | Msa1462490:CDS |
| AAGAGAGGAGCTTGTTCGAA+AGG | 0.571197 | tig0042325:-2667 | Msa1462490:CDS |
| GGATTCACAGCTCTCGTCAC+CGG | 0.571734 | tig0042325:-2858 | Msa1462490:CDS |
| AAGCTCAAGATGGTCCCTCA+AGG | 0.573784 | tig0042325:-2880 | Msa1462490:CDS |
| GAGAGCTGTGAATCCCTTGA+GGG | 0.579284 | tig0042325:+2866 | None:intergenic |
| CCACAGTGTACACTTGCTCT+AGG | 0.579593 | tig0042325:-6544 | None:intergenic |
| AGAGGAGCTTGTTCGAAAGG+TGG | 0.587374 | tig0042325:-2664 | Msa1462490:CDS |
| CCAGTGATGTAGGAAGCAGC+TGG | 0.588298 | tig0042325:+1306 | Msa1462490:intergenic |
| AGCTCAAGATGGTCCCTCAA+GGG | 0.601552 | tig0042325:-2879 | Msa1462490:CDS |
| GATGATTAACAAGGAGACAC+AGG | 0.610429 | tig0042325:+1080 | Msa1462490:intergenic |
| AGGAAGCAGCTGGCAGACAA+AGG | 0.611292 | tig0042325:+1316 | Msa1462490:intergenic |
| TCGTCACCGGTGGAACTCGT+GGG | 0.613856 | tig0042325:-2845 | Msa1462490:CDS |
| TTCACAGCTCTCGTCACCGG+TGG | 0.616296 | tig0042325:-2855 | Msa1462490:CDS |
| CGAGAGCTGTGAATCCCTTG+AGG | 0.617629 | tig0042325:+2865 | Msa1462490:intergenic |
| ACAGTAGCAGAAGCTCAAGA+TGG | 0.618803 | tig0042325:-2890 | Msa1462490:CDS |
| CAGACAAAGGAAAGCTACCA+AGG | 0.625310 | tig0042325:+1329 | Msa1462490:intergenic |
| TGAATGAACGCTTGAATGAG+TGG | 0.642583 | tig0042325:-2746 | Msa1462490:CDS |
| TGAACGCTTGAATGAGTGGA+AGG | 0.643639 | tig0042325:-2742 | Msa1462490:CDS |
| AGACCTTCAGATGATTAACA+AGG | 0.652445 | tig0042325:+1071 | Msa1462490:intergenic |
| CACTTGTTCTAGGAATGAAG+AGG | 0.665255 | tig0042325:-2772 | Msa1462490:CDS |
| ACCAACAATTGAGTATACAA+CGG | 0.674590 | tig0042325:-1986 | Msa1462490:CDS |
| GTTGCATCTCTGACAAACGT+AGG | 0.677603 | tig0042325:-1850 | Msa1462490:CDS |
| ACAATGTTGGAACAAATGTG+AGG | 0.690959 | tig0042325:-2011 | Msa1462490:CDS |
| GTTTGTCAGAGATGCAACAG+AGG | 0.693930 | tig0042325:+1855 | Msa1462490:intergenic |
| GATCGGTCATGCTATCGTAG+AGG | 0.705413 | tig0042325:-2823 | Msa1462490:CDS |
| GGAGCAACTGTGTTGCACCG+TGG | 0.740002 | tig0042325:-1636 | Msa1462490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAATAAATAAA+GGG | + | tig0042325:3321-3340 | Msa1462490:intergenic | 0.0% |
| !! | TAAAATAAATAAATAAATAA+AGG | + | tig0042325:3322-3341 | Msa1462490:intergenic | 0.0% |
| !!! | TATTTATTTATTTTATTATT+TGG | - | tig0042325:3327-3346 | Msa1462490:intron | 0.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | tig0042325:3784-3803 | Msa1462490:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | tig0042325:3785-3804 | Msa1462490:intron | 10.0% |
| !! | ATTTAGAAAACAAAGATAAA+TGG | + | tig0042325:2989-3008 | Msa1462490:intergenic | 15.0% |
| !!! | CTAAAAATGATCTATTTTTA+TGG | - | tig0042325:3093-3112 | Msa1462490:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | tig0042325:3786-3805 | Msa1462490:intron | 15.0% |
| !! | AAAGTGAAATATATTGAATT+GGG | - | tig0042325:3809-3828 | Msa1462490:intron | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | - | tig0042325:3849-3868 | Msa1462490:intron | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | - | tig0042325:3850-3869 | Msa1462490:intron | 15.0% |
| !! | GAAAACGAAATATATAGAAA+AGG | + | tig0042325:1106-1125 | Msa1462490:intergenic | 20.0% |
| !! | ACATCAACATAATATAGAAA+CGG | + | tig0042325:1128-1147 | Msa1462490:intergenic | 20.0% |
| !!! | TACTATTTTATTTTTTCACC+AGG | + | tig0042325:1537-1556 | Msa1462490:intergenic | 20.0% |
| !! | TTCATAAAGAAAAAATGACA+AGG | + | tig0042325:2356-2375 | Msa1462490:intergenic | 20.0% |
| !! | AATTTGCAATAGATATGAAA+TGG | + | tig0042325:3073-3092 | Msa1462490:intergenic | 20.0% |
| !!! | AAAAGTAGAAGTTTTTTTCT+TGG | + | tig0042325:3258-3277 | Msa1462490:intergenic | 20.0% |
| !!! | AAGAAAAAAACTTCTACTTT+TGG | - | tig0042325:3257-3276 | Msa1462490:intron | 20.0% |
| !! | GAATAGATGTTATAAATAAG+AGG | - | tig0042325:3609-3628 | Msa1462490:intron | 20.0% |
| !!! | AACAATATCAACTTTTATCA+AGG | + | tig0042325:3663-3682 | Msa1462490:intergenic | 20.0% |
| !! | GAAAGTGAAATATATTGAAT+TGG | - | tig0042325:3808-3827 | Msa1462490:intron | 20.0% |
| !!! | TTGAAATGACTCAATTATTT+TGG | - | tig0042325:3896-3915 | Msa1462490:intron | 20.0% |
| !!! | TGAAATGACTCAATTATTTT+GGG | - | tig0042325:3897-3916 | Msa1462490:intron | 20.0% |
| !!! | GACACTTTTTTTTAGTAAAT+GGG | - | tig0042325:3919-3938 | Msa1462490:intron | 20.0% |
| !!! | AAATGTATAACATACTTTTG+AGG | - | tig0042325:4364-4383 | Msa1462490:intron | 20.0% |
| !! | ACTTATTGTAGAAAATTTAG+TGG | - | tig0042325:4985-5004 | Msa1462490:intron | 20.0% |
| !! | AAGCATAAGAAAATCTTAAA+TGG | + | tig0042325:5243-5262 | Msa1462490:intergenic | 20.0% |
| !! | AAAATTGATGAGTATTAACT+TGG | - | tig0042325:5511-5530 | Msa1462490:intron | 20.0% |
| !!! | TGTACTGATATAATTTGATT+TGG | - | tig0042325:5953-5972 | Msa1462490:intron | 20.0% |
| ! | TGTGCTAGTTGAAAATAATT+TGG | + | tig0042325:1296-1315 | Msa1462490:intergenic | 25.0% |
| !! | TGATTTGTATGTTTGTCTTA+AGG | - | tig0042325:1338-1357 | Msa1462490:CDS | 25.0% |
| ! | CTAATGCATTATAACTCTAA+CGG | - | tig0042325:1464-1483 | Msa1462490:intron | 25.0% |
| !!! | ATGTTTTAAGATTTTCTTCC+TGG | - | tig0042325:1516-1535 | Msa1462490:intron | 25.0% |
| ! | ATAGTAGAAGTTATAGAAGA+AGG | - | tig0042325:1551-1570 | Msa1462490:intron | 25.0% |
| !! | CTTGTTATAAGACTTTCTTA+TGG | - | tig0042325:1759-1778 | Msa1462490:intron | 25.0% |
| !!! | CATCACTTTTGAATAATCTT+CGG | + | tig0042325:1944-1963 | Msa1462490:intergenic | 25.0% |
| ! | ATCTGTAGTATTAATCCAAA+TGG | - | tig0042325:2658-2677 | Msa1462490:CDS | 25.0% |
| ! | TATTATGTTCAGAACTTATG+TGG | - | tig0042325:2684-2703 | Msa1462490:CDS | 25.0% |
| !! | TTTCATCAAATTCTAGTTAG+AGG | - | tig0042325:2929-2948 | Msa1462490:five_prime_UTR | 25.0% |
| !! | TTCATCAAATTCTAGTTAGA+GGG | - | tig0042325:2930-2949 | Msa1462490:five_prime_UTR | 25.0% |
| !! | TTATGAACTTTGACTTATCT+AGG | - | tig0042325:3026-3045 | Msa1462490:intron | 25.0% |
| ! | ATGAAGCCCAATTTATTTAT+GGG | - | tig0042325:3116-3135 | Msa1462490:intron | 25.0% |
| ! | ACATGACCCATAAATAAATT+GGG | + | tig0042325:3125-3144 | Msa1462490:intergenic | 25.0% |
| ! | AACATGACCCATAAATAAAT+TGG | + | tig0042325:3126-3145 | Msa1462490:intergenic | 25.0% |
| ! | TATTATTTGGCACATAACAA+AGG | - | tig0042325:3340-3359 | Msa1462490:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGTAAA+TGG | - | tig0042325:3918-3937 | Msa1462490:intron | 25.0% |
| ! | TGTGATTACAGTAATATTGA+TGG | + | tig0042325:4108-4127 | Msa1462490:intergenic | 25.0% |
| !! | ATAAAGGAAACAAAGGTTTT+TGG | + | tig0042325:4247-4266 | Msa1462490:intergenic | 25.0% |
| !! | CCAAAAGTTTGAAATTTGAA+CGG | - | tig0042325:4331-4350 | Msa1462490:intron | 25.0% |
| !! | CAAAAGTTTGAAATTTGAAC+GGG | - | tig0042325:4332-4351 | Msa1462490:intron | 25.0% |
| !! | AAAAGTTTGAAATTTGAACG+GGG | - | tig0042325:4333-4352 | Msa1462490:intron | 25.0% |
| !!! | TGTACAGTGTACTATTTTTT+TGG | + | tig0042325:4436-4455 | Msa1462490:intergenic | 25.0% |
| ! | TAAGGTAACAAAAACAACAA+TGG | - | tig0042325:4539-4558 | Msa1462490:intron | 25.0% |
| ! | TTAAGAACATTGCATTACAT+AGG | - | tig0042325:5104-5123 | Msa1462490:intron | 25.0% |
| ! | TCTAATATTCTTATGAGCTT+AGG | - | tig0042325:5427-5446 | Msa1462490:intron | 25.0% |
| ! | AACATTACATAATCGTTAAG+TGG | + | tig0042325:5866-5885 | Msa1462490:intergenic | 25.0% |
| ! | TTAGCATATAACTGTAAGAA+AGG | + | tig0042325:6044-6063 | Msa1462490:intergenic | 25.0% |
| !!! | AGAAATAGTCTTATGTTCTA+TGG | + | tig0042325:6349-6368 | Msa1462490:intergenic | 25.0% |
| ! | TATGTAGTATCTGTATCATT+AGG | + | tig0042325:6456-6475 | Msa1462490:intergenic | 25.0% |
| TTAAATGAGTGGAAAGAGAA+GGG | - | tig0042325:967-986 | Msa1462490:three_prime_UTR | 30.0% | |
| !!! | GAGAAGGGTTTTTTTGTTTA+TGG | - | tig0042325:982-1001 | Msa1462490:three_prime_UTR | 30.0% |
| !!! | GGGTTTTTTTGTTTATGGAT+CGG | - | tig0042325:987-1006 | Msa1462490:three_prime_UTR | 30.0% |
| CTTATAACAACCTTAGCATA+GGG | + | tig0042325:1618-1637 | Msa1462490:intergenic | 30.0% | |
| ! | TGCATTCTTTTGATGTACTT+TGG | - | tig0042325:1736-1755 | Msa1462490:intron | 30.0% |
| TGATAATCTTGTGAGCTATT+AGG | - | tig0042325:1870-1889 | Msa1462490:CDS | 30.0% | |
| AAAAGTGATGACTACTAACT+TGG | - | tig0042325:1954-1973 | Msa1462490:CDS | 30.0% | |
| ! | TTTCCAGATTCTTTAAGAAG+AGG | + | tig0042325:2012-2031 | Msa1462490:intergenic | 30.0% |
| CTTCTTAAAGAATCTGGAAA+TGG | - | tig0042325:2012-2031 | Msa1462490:CDS | 30.0% | |
| AAAAAGTCTTGCTTGTGAAT+GGG | - | tig0042325:2226-2245 | Msa1462490:intron | 30.0% | |
| AATGGGCAAAAGACAATATA+AGG | - | tig0042325:2243-2262 | Msa1462490:intron | 30.0% | |
| ACCTTTAATTATCCATTCTC+TGG | - | tig0042325:2330-2349 | Msa1462490:intron | 30.0% | |
| AACCGAAATCATGTATTAGT+AGG | - | tig0042325:2515-2534 | Msa1462490:intron | 30.0% | |
| AGCCTACTAATACATGATTT+CGG | + | tig0042325:2520-2539 | Msa1462490:intergenic | 30.0% | |
| CAGCAAAAATTAAAATGCAG+AGG | + | tig0042325:2599-2618 | Msa1462490:intergenic | 30.0% | |
| CTGAACATAATATTGCCATT+TGG | + | tig0042325:2676-2695 | Msa1462490:intergenic | 30.0% | |
| TTAGCAATAAACTGCAAGAA+AGG | + | tig0042325:2721-2740 | Msa1462490:intergenic | 30.0% | |
| !! | TTTACTGTGAATGGATTTTC+TGG | - | tig0042325:2883-2902 | Msa1462490:CDS | 30.0% |
| !! | TTACTGTGAATGGATTTTCT+GGG | - | tig0042325:2884-2903 | Msa1462490:CDS | 30.0% |
| GGGTTGTTTAAATAACACAA+TGG | - | tig0042325:2904-2923 | Msa1462490:CDS | 30.0% | |
| CTTATCTAGGAAGGAATATA+TGG | - | tig0042325:3039-3058 | Msa1462490:intron | 30.0% | |
| TAGGAAGGAATATATGGAAA+AGG | - | tig0042325:3045-3064 | Msa1462490:intron | 30.0% | |
| GATGAAGCCCAATTTATTTA+TGG | - | tig0042325:3115-3134 | Msa1462490:intron | 30.0% | |
| ACATAACAAAGGAATTCGAT+TGG | - | tig0042325:3351-3370 | Msa1462490:intron | 30.0% | |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | tig0042325:3400-3419 | Msa1462490:intron | 30.0% |
| TTCTCATTGGTCAAAAACAA+TGG | + | tig0042325:3485-3504 | Msa1462490:intergenic | 30.0% | |
| !! | TTGTTTTTCTCACTTCTCAT+TGG | + | tig0042325:3498-3517 | Msa1462490:intergenic | 30.0% |
| AATGAGAAGTGAGAAAAACA+AGG | - | tig0042325:3497-3516 | Msa1462490:intron | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | tig0042325:3523-3542 | Msa1462490:intron | 30.0% | |
| ! | AATATTGATGGTAGTTCGAT+TGG | + | tig0042325:4096-4115 | Msa1462490:intergenic | 30.0% |
| ! | TCACATTATCTAGACTTTTG+AGG | - | tig0042325:4123-4142 | Msa1462490:intron | 30.0% |
| ! | CACATTATCTAGACTTTTGA+GGG | - | tig0042325:4124-4143 | Msa1462490:intron | 30.0% |
| ! | ACATTATCTAGACTTTTGAG+GGG | - | tig0042325:4125-4144 | Msa1462490:intron | 30.0% |
| ! | AATTCCATCGAAAAGGTTTT+TGG | + | tig0042325:4194-4213 | Msa1462490:intergenic | 30.0% |
| TCTCTATAATTCCATCGAAA+AGG | + | tig0042325:4201-4220 | Msa1462490:intergenic | 30.0% | |
| ! | CCGTTCAAATTTCAAACTTT+TGG | + | tig0042325:4334-4353 | Msa1462490:intergenic | 30.0% |
| GTTTACACATGATTGGAATT+TGG | + | tig0042325:5043-5062 | Msa1462490:intergenic | 30.0% | |
| AACATTGCATTACATAGGTA+GGG | - | tig0042325:5109-5128 | Msa1462490:intron | 30.0% | |
| ACCAACAATTGAGTATACAA+CGG | - | tig0042325:5478-5497 | Msa1462490:intron | 30.0% | |
| TATCCTCTTCTTAAAGAATC+TGG | - | tig0042325:5563-5582 | Msa1462490:intron | 30.0% | |
| ! | TTTCCAGATTCTTTAAGAAG+AGG | + | tig0042325:2012-2031 | Msa1462490:intergenic | 30.0% |
| CTTCTTAAAGAATCTGGAAA+TGG | - | tig0042325:2012-2031 | Msa1462490:CDS | 30.0% | |
| AAAAAGTCTTGCTTGTGAAT+GGG | - | tig0042325:2226-2245 | Msa1462490:intron | 30.0% | |
| AATGGGCAAAAGACAATATA+AGG | - | tig0042325:2243-2262 | Msa1462490:intron | 30.0% | |
| !! | AGCTCTGAATGGATAATTAA+AGG | + | tig0042325:5898-5917 | Msa1462490:intergenic | 30.0% |
| !! | AAAATGATAAGAGCTCTGAA+TGG | + | tig0042325:5909-5928 | Msa1462490:intergenic | 30.0% |
| ACATATGATATTCTTGCAAG+TGG | - | tig0042325:6471-6490 | Msa1462490:intron | 30.0% | |
| ATTCACTCGATTAAGATTAG+TGG | - | tig0042325:6530-6549 | Msa1462490:intron | 30.0% | |
| TGAGCAAATGCTTAAATGAG+TGG | - | tig0042325:956-975 | Msa1462490:three_prime_UTR | 35.0% | |
| CTTAAATGAGTGGAAAGAGA+AGG | - | tig0042325:966-985 | Msa1462490:three_prime_UTR | 35.0% | |
| ! | GATGTTGAATTTTGCATAGC+TGG | - | tig0042325:1149-1168 | Msa1462490:three_prime_UTR | 35.0% |
| AATCAATTTGTAGATGCTCG+TGG | - | tig0042325:1233-1252 | Msa1462490:CDS | 35.0% | |
| !!! | AGTTCACTTTTTGAGTGTGT+TGG | - | tig0042325:1433-1452 | Msa1462490:intron | 35.0% |
| CCTTATAACAACCTTAGCAT+AGG | + | tig0042325:1619-1638 | Msa1462490:intergenic | 35.0% | |
| CCTATGCTAAGGTTGTTATA+AGG | - | tig0042325:1616-1635 | Msa1462490:CDS | 35.0% | |
| AAATCAAGTGCGTGTAAGAT+TGG | + | tig0042325:1685-1704 | Msa1462490:intergenic | 35.0% | |
| TACCAGAAACAAGACGAAAA+AGG | + | tig0042325:1813-1832 | Msa1462490:intergenic | 35.0% | |
| AGCTATTAGGTAAACAATGC+TGG | - | tig0042325:1883-1902 | Msa1462490:CDS | 35.0% | |
| CATCCTCTTCTTAAAGAATC+TGG | - | tig0042325:2006-2025 | Msa1462490:CDS | 35.0% | |
| CAAAAAGTCTTGCTTGTGAA+TGG | - | tig0042325:2225-2244 | Msa1462490:intron | 35.0% | |
| GCCAGAGAATGGATAATTAA+AGG | + | tig0042325:2334-2353 | Msa1462490:intergenic | 35.0% | |
| GTATTATTGAATCGCAACGT+AGG | + | tig0042325:2410-2429 | Msa1462490:intergenic | 35.0% | |
| !! | TAAAATGCAGAGGCATCATA+TGG | + | tig0042325:2589-2608 | Msa1462490:intergenic | 35.0% |
| GTTTCTGCTATACGCTTTAT+CGG | + | tig0042325:2778-2797 | Msa1462490:intergenic | 35.0% | |
| TAAATGGTAAAATGAGAGCC+AGG | + | tig0042325:2973-2992 | Msa1462490:intergenic | 35.0% | |
| ! | GAACTTTGACTTATCTAGGA+AGG | - | tig0042325:3030-3049 | Msa1462490:intron | 35.0% |
| !! | TTCATTAACTTGTGCCCTAA+GGG | + | tig0042325:3157-3176 | Msa1462490:intergenic | 35.0% |
| TTCATTAACTTATGCCCCAA+GGG | - | tig0042325:3280-3299 | Msa1462490:intron | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | + | tig0042325:3298-3317 | Msa1462490:intergenic | 35.0% |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | tig0042325:3405-3424 | Msa1462490:intergenic | 35.0% | |
| AGAGAGAAAAATGAAGAGAG+AGG | + | tig0042325:3462-3481 | Msa1462490:intergenic | 35.0% | |
| ! | AGAGGAGCATAATGATTAGT+AGG | - | tig0042325:3627-3646 | Msa1462490:intron | 35.0% |
| GAGCATAATGATTAGTAGGT+AGG | - | tig0042325:3631-3650 | Msa1462490:intron | 35.0% | |
| ATCTGTGTGAAAAACCAAAC+TGG | + | tig0042325:3764-3783 | Msa1462490:intergenic | 35.0% | |
| !! | AGTTTTATCAGGAACTTGGT+TGG | + | tig0042325:4048-4067 | Msa1462490:intergenic | 35.0% |
| !! | CATTATCTAGACTTTTGAGG+GGG | - | tig0042325:4126-4145 | Msa1462490:intron | 35.0% |
| !! | ATTATCTAGACTTTTGAGGG+GGG | - | tig0042325:4127-4146 | Msa1462490:intron | 35.0% |
| CAAAAAACAACCCTGGAATA+GGG | - | tig0042325:4154-4173 | Msa1462490:intron | 35.0% | |
| GAGAGTAGATTTGACAAAGA+AGG | - | tig0042325:4217-4236 | Msa1462490:intron | 35.0% | |
| !! | AAGGAAACAAAGGTTTTTGG+TGG | + | tig0042325:4244-4263 | Msa1462490:intergenic | 35.0% |
| TTGCCTAGCTAAAAAAACTG+TGG | - | tig0042325:4307-4326 | Msa1462490:intron | 35.0% | |
| !! | AGAACGTGTATGTGTTTTTG+TGG | + | tig0042325:4505-4524 | Msa1462490:intergenic | 35.0% |
| TTCTCAGTGTTAGCAAGATA+AGG | - | tig0042325:4521-4540 | Msa1462490:intron | 35.0% | |
| CTATAGTGTACACTTGTTCT+AGG | - | tig0042325:4682-4701 | Msa1462490:intron | 35.0% | |
| ! | GAGAAAGGTTTTTCTGTTCA+TGG | - | tig0042325:4744-4763 | Msa1462490:intron | 35.0% |
| ! | AAGGTGGCTTCTGATTTTAA+TGG | - | tig0042325:4816-4835 | Msa1462490:intron | 35.0% |
| ATGACTCGTTTACACATGAT+TGG | + | tig0042325:5050-5069 | Msa1462490:intergenic | 35.0% | |
| GAACATTGCATTACATAGGT+AGG | - | tig0042325:5108-5127 | Msa1462490:intron | 35.0% | |
| GACATGAATAAGTGGAAATC+CGG | + | tig0042325:5150-5169 | Msa1462490:intergenic | 35.0% | |
| ! | CTTTTGATGCACTTTGTCTT+TGG | - | tig0042325:5217-5236 | Msa1462490:intron | 35.0% |
| TGAGCTTAGGTAAACAATGT+TGG | - | tig0042325:5440-5459 | Msa1462490:intron | 35.0% | |
| ACAATGTTGGAACAAATGTG+AGG | - | tig0042325:5453-5472 | Msa1462490:intron | 35.0% | |
| TCCGTTGTATACTCAATTGT+TGG | + | tig0042325:5482-5501 | Msa1462490:intergenic | 35.0% | |
| TAAGAAGAGGATATGTCAGT+TGG | + | tig0042325:5556-5575 | Msa1462490:intergenic | 35.0% | |
| CAAAAAGTCTTGCTTGTGAA+TGG | - | tig0042325:2225-2244 | Msa1462490:intron | 35.0% | |
| TATCTCGTACACCGATAAAA+CGG | - | tig0042325:6087-6106 | Msa1462490:intron | 35.0% | |
| ! | AATAACTTGTCCAGTGATGT+AGG | + | tig0042325:6171-6190 | Msa1462490:intergenic | 35.0% |
| !! | GGACAAGTTATTTCTGTTGA+TGG | - | tig0042325:6179-6198 | Msa1462490:intron | 35.0% |
| !! | CAAGTTATTTCTGTTGATGG+AGG | - | tig0042325:6182-6201 | Msa1462490:intron | 35.0% |
| TCACTTCTTATGATCATGCT+GGG | + | tig0042325:6230-6249 | Msa1462490:intergenic | 35.0% | |
| ATCACTTCTTATGATCATGC+TGG | + | tig0042325:6231-6250 | Msa1462490:intergenic | 35.0% | |
| TCTCCTTGTTAATCATCTGA+AGG | - | tig0042325:6390-6409 | Msa1462490:intron | 35.0% | |
| AGACCTTCAGATGATTAACA+AGG | + | tig0042325:6396-6415 | Msa1462490:intergenic | 35.0% | |
| CATGATGAGATGCTTGATAA+AGG | - | tig0042325:6423-6442 | Msa1462490:intron | 35.0% | |
| ATCTTCTCCTTCTCAAAGAG+AGG | - | tig0042325:1020-1039 | Msa1462490:three_prime_UTR | 40.0% | |
| ! | ATAAGCTCCTCTCTTTGAGA+AGG | + | tig0042325:1030-1049 | Msa1462490:intergenic | 40.0% |
| CAAGTTGCTTCTGCTTTCAA+CGG | - | tig0042325:1054-1073 | Msa1462490:three_prime_UTR | 40.0% | |
| ATGCTCGTGGAAAACTTAGT+TGG | - | tig0042325:1246-1265 | Msa1462490:CDS | 40.0% | |
| !! | ACACGCACTTGATTTTCAAG+TGG | - | tig0042325:1690-1709 | Msa1462490:CDS | 40.0% |
| !!! | CACCTTTTTCGTCTTGTTTC+TGG | - | tig0042325:1808-1827 | Msa1462490:intron | 40.0% |
| ACAATGCTGGTACAAATGTG+AGG | - | tig0042325:1896-1915 | Msa1462490:CDS | 40.0% | |
| TCGGCTGTATACTCAATTGT+TGG | + | tig0042325:1925-1944 | Msa1462490:intergenic | 40.0% | |
| TGCATTCCATCTATGTCAAC+TGG | - | tig0042325:1981-2000 | Msa1462490:CDS | 40.0% | |
| AGCATCTATGCAGTGAGTAA+AGG | - | tig0042325:2087-2106 | Msa1462490:intron | 40.0% | |
| TGCAGTGAGTAAAGGTAACT+TGG | - | tig0042325:2095-2114 | Msa1462490:intron | 40.0% | |
| ! | AGCGACGTTTTTGTATACCA+GGG | + | tig0042325:2284-2303 | Msa1462490:intergenic | 40.0% |
| ! | AAGCGACGTTTTTGTATACC+AGG | + | tig0042325:2285-2304 | Msa1462490:intergenic | 40.0% |
| GTATACAAAAACGTCGCTTG+TGG | - | tig0042325:2286-2305 | Msa1462490:intron | 40.0% | |
| AAAATGACAAGGCCAGAGAA+TGG | + | tig0042325:2345-2364 | Msa1462490:intergenic | 40.0% | |
| ATGCATACGAAACACGATCA+TGG | - | tig0042325:2456-2475 | Msa1462490:intron | 40.0% | |
| TGCATACGAAACACGATCAT+GGG | - | tig0042325:2457-2476 | Msa1462490:intron | 40.0% | |
| TGATTTCGGTTGCATGAATC+AGG | + | tig0042325:2506-2525 | Msa1462490:intergenic | 40.0% | |
| AACAGTTTGTCCAGTGATGT+AGG | + | tig0042325:2848-2867 | Msa1462490:intergenic | 40.0% | |
| !! | GGACAAACTGTTTCTGTTGA+TGG | - | tig0042325:2856-2875 | Msa1462490:CDS | 40.0% |
| !! | CAAACTGTTTCTGTTGATGG+AGG | - | tig0042325:2859-2878 | Msa1462490:CDS | 40.0% |
| GATGGAGGATTTACTGTGAA+TGG | - | tig0042325:2874-2893 | Msa1462490:CDS | 40.0% | |
| TAGAGGGTCTGTCAAAAACA+AGG | - | tig0042325:2946-2965 | Msa1462490:five_prime_UTR | 40.0% | |
| AGAGGGTCTGTCAAAAACAA+GGG | - | tig0042325:2947-2966 | Msa1462490:five_prime_UTR | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTT+AGG | - | tig0042325:3139-3158 | Msa1462490:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | - | tig0042325:3140-3159 | Msa1462490:intron | 40.0% |
| !! | GTTCATTAACTTGTGCCCTA+AGG | + | tig0042325:3158-3177 | Msa1462490:intergenic | 40.0% |
| GTTCATTAACTTATGCCCCA+AGG | - | tig0042325:3279-3298 | Msa1462490:intron | 40.0% | |
| !! | AATGTTAACTTGTGCCCTTG+GGG | + | tig0042325:3297-3316 | Msa1462490:intergenic | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | + | tig0042325:3299-3318 | Msa1462490:intergenic | 40.0% |
| GTAAATGGGTCAGATATTCC+AGG | - | tig0042325:3933-3952 | Msa1462490:intron | 40.0% | |
| TTTATCAGGAACTTGGTTGG+TGG | + | tig0042325:4045-4064 | Msa1462490:intergenic | 40.0% | |
| !! | TGGGAGTTTTATCAGGAACT+TGG | + | tig0042325:4052-4071 | Msa1462490:intergenic | 40.0% |
| !! | TTATCTAGACTTTTGAGGGG+GGG | - | tig0042325:4128-4147 | Msa1462490:intron | 40.0% |
| !!! | CCTATTCCAGGGTTGTTTTT+TGG | + | tig0042325:4156-4175 | Msa1462490:intergenic | 40.0% |
| CCAAAAAACAACCCTGGAAT+AGG | - | tig0042325:4153-4172 | Msa1462490:intron | 40.0% | |
| ! | ACCACCAAAAACCTTTTCGA+TGG | - | tig0042325:4187-4206 | Msa1462490:intron | 40.0% |
| !! | TCCATCGAAAAGGTTTTTGG+TGG | + | tig0042325:4191-4210 | Msa1462490:intergenic | 40.0% |
| GCTGGAGATAAAGGAAACAA+AGG | + | tig0042325:4254-4273 | Msa1462490:intergenic | 40.0% | |
| TTGTTTCCTTTATCTCCAGC+AGG | - | tig0042325:4254-4273 | Msa1462490:intron | 40.0% | |
| TCAAATCCTGCTGGAGATAA+AGG | + | tig0042325:4263-4282 | Msa1462490:intergenic | 40.0% | |
| TTATCTCCAGCAGGATTTGA+AGG | - | tig0042325:4263-4282 | Msa1462490:intron | 40.0% | |
| !!! | GGACCACAGTTTTTTTAGCT+AGG | + | tig0042325:4313-4332 | Msa1462490:intergenic | 40.0% |
| !! | CACTTGTTCTAGGAATGAAG+AGG | - | tig0042325:4692-4711 | Msa1462490:intron | 40.0% |
| TGAATGAACGCTTGAATGAG+TGG | - | tig0042325:4718-4737 | Msa1462490:intron | 40.0% | |
| TTGAATGAGTGGAAGGAGAA+AGG | - | tig0042325:4729-4748 | Msa1462490:intron | 40.0% | |
| GACTTCTTCTTCTCAAAGAG+AGG | - | tig0042325:4782-4801 | Msa1462490:intron | 40.0% | |
| CATTACATAGGTAGGGACTA+GGG | - | tig0042325:5116-5135 | Msa1462490:intron | 40.0% | |
| TGCGACAAGACATGAATAAG+TGG | + | tig0042325:5158-5177 | Msa1462490:intergenic | 40.0% | |
| !! | TCGCATTTTCAAGCTTCTGA+GGG | + | tig0042325:5276-5295 | Msa1462490:intergenic | 40.0% |
| !! | ATCGCATTTTCAAGCTTCTG+AGG | + | tig0042325:5277-5296 | Msa1462490:intergenic | 40.0% |
| GATATGTCAGTTGGCATAGA+TGG | + | tig0042325:5547-5566 | Msa1462490:intergenic | 40.0% | |
| ! | AGTGGCGTTTTTGTATACCA+CGG | + | tig0042325:5848-5867 | Msa1462490:intergenic | 40.0% |
| ! | GTTTCGGCTATCCGTTTTAT+CGG | + | tig0042325:6101-6120 | Msa1462490:intergenic | 40.0% |
| GGAAGACACTTCATGTGTTT+CGG | + | tig0042325:6117-6136 | Msa1462490:intergenic | 40.0% | |
| ! | AACACATGAAGTGTCTTCCT+TGG | - | tig0042325:6118-6137 | Msa1462490:intron | 40.0% |
| GATGGAGGATTTACTGCAAA+TGG | - | tig0042325:6197-6216 | Msa1462490:intron | 40.0% | |
| GATGATTAACAAGGAGACAC+AGG | + | tig0042325:6387-6406 | Msa1462490:intergenic | 40.0% | |
| TTGCAAGTGGAAAGCTCAAA+GGG | - | tig0042325:6484-6503 | Msa1462490:intron | 40.0% | |
| GATGTGCCAGTTGACATAGA+TGG | + | tig0042325:1990-2009 | Msa1462490:intergenic | 45.0% | |
| GCTTATCAGAGATGCAACAG+AGG | + | tig0042325:2055-2074 | Msa1462490:intergenic | 45.0% | |
| GTTGCATCTCTGATAAGCGT+AGG | - | tig0042325:2057-2076 | Msa1462490:intron | 45.0% | |
| TCTCTGATAAGCGTAGGTAC+CGG | - | tig0042325:2063-2082 | Msa1462490:intron | 45.0% | |
| ACTCACTGCATAGATGCTTC+CGG | + | tig0042325:2085-2104 | Msa1462490:intergenic | 45.0% | |
| AAAAACGTCGCTTGTGGAAC+AGG | - | tig0042325:2292-2311 | Msa1462490:intron | 45.0% | |
| !! | AATGCAGAGGCATCATATGG+TGG | + | tig0042325:2586-2605 | Msa1462490:intergenic | 45.0% |
| AGATGCTCACACTGACACTA+CGG | + | tig0042325:2642-2661 | Msa1462490:intergenic | 45.0% | |
| ! | AACACATGAAGTGTCTGCCT+TGG | - | tig0042325:2795-2814 | Msa1462490:CDS | 45.0% |
| CAGACAAAGGAAAGTCACCA+AGG | + | tig0042325:2815-2834 | Msa1462490:intergenic | 45.0% | |
| GAGACATCATTTGCGAGTCA+TGG | + | tig0042325:3691-3710 | Msa1462490:intergenic | 45.0% | |
| ! | CAAACTGGCTCAGATATTCC+GGG | + | tig0042325:3749-3768 | Msa1462490:intergenic | 45.0% |
| ! | CCAAACTGGCTCAGATATTC+CGG | + | tig0042325:3750-3769 | Msa1462490:intergenic | 45.0% |
| ATGGGTCAGATATTCCAGGA+CGG | - | tig0042325:3937-3956 | Msa1462490:intron | 45.0% | |
| ! | GTTGGATCACTCGTTTTGCA+GGG | + | tig0042325:4023-4042 | Msa1462490:intergenic | 45.0% |
| !!! | CGAGCTTTGGGAGTTTTATC+AGG | + | tig0042325:4059-4078 | Msa1462490:intergenic | 45.0% |
| ACCATGGTAGATCGAGCTTT+GGG | + | tig0042325:4071-4090 | Msa1462490:intergenic | 45.0% | |
| AACCATGGTAGATCGAGCTT+TGG | + | tig0042325:4072-4091 | Msa1462490:intergenic | 45.0% | |
| ! | GGTAGTTCGATTGGTAACCA+TGG | + | tig0042325:4087-4106 | Msa1462490:intergenic | 45.0% |
| AACAACCCTGGAATAGGGAT+AGG | - | tig0042325:4159-4178 | Msa1462490:intron | 45.0% | |
| CTTCTCCTATCCCTATTCCA+GGG | + | tig0042325:4167-4186 | Msa1462490:intergenic | 45.0% | |
| TCTTCTCCTATCCCTATTCC+AGG | + | tig0042325:4168-4187 | Msa1462490:intergenic | 45.0% | |
| TGTGAACCTTCAAATCCTGC+TGG | + | tig0042325:4272-4291 | Msa1462490:intergenic | 45.0% | |
| ACAGTAGCAGAAGCTCAAGA+TGG | - | tig0042325:4574-4593 | Msa1462490:intron | 45.0% | |
| !! | GTAGAGGAACTTGCTGAGTT+TGG | - | tig0042325:4657-4676 | Msa1462490:intron | 45.0% |
| TGAACGCTTGAATGAGTGGA+AGG | - | tig0042325:4722-4741 | Msa1462490:intron | 45.0% | |
| ! | AAGAGAGGAGCTTGTTCGAA+AGG | - | tig0042325:4797-4816 | Msa1462490:intron | 45.0% |
| GCATTACATAGGTAGGGACT+AGG | - | tig0042325:5115-5134 | Msa1462490:intron | 45.0% | |
| GTTTGTCAGAGATGCAACAG+AGG | + | tig0042325:5612-5631 | Msa1462490:intergenic | 45.0% | |
| GTTGCATCTCTGACAAACGT+AGG | - | tig0042325:5614-5633 | Msa1462490:intron | 45.0% | |
| TCTCTGACAAACGTAGGTTC+TGG | - | tig0042325:5620-5639 | Msa1462490:intron | 45.0% | |
| ACCATATACGCAGCGTGTAA+AGG | - | tig0042325:5644-5663 | Msa1462490:intron | 45.0% | |
| ACCTTTACACGCTGCGTATA+TGG | + | tig0042325:5648-5667 | Msa1462490:intergenic | 45.0% | |
| TGCAGCTGAAGAAAACAGCA+CGG | + | tig0042325:5756-5775 | Msa1462490:intergenic | 45.0% | |
| CAGACAAAGGAAAGCTACCA+AGG | + | tig0042325:6138-6157 | Msa1462490:intergenic | 45.0% | |
| CTTGCAAGTGGAAAGCTCAA+AGG | - | tig0042325:6483-6502 | Msa1462490:intron | 45.0% | |
| AAAGGGTCACATACTCTTGC+TGG | - | tig0042325:6501-6520 | Msa1462490:intron | 45.0% | |
| ACTGTGTGTGTGTGTGTGTG+AGG | + | tig0042325:1585-1604 | Msa1462490:intergenic | 50.0% | |
| GAGAGCTTGTCCCTATGCTA+AGG | - | tig0042325:1605-1624 | Msa1462490:intron | 50.0% | |
| AGTGCGTGTAAGATTGGCGA+CGG | + | tig0042325:1679-1698 | Msa1462490:intergenic | 50.0% | |
| GTCTGTCAAAAACAAGGGCC+TGG | - | tig0042325:2952-2971 | Msa1462490:five_prime_UTR | 50.0% | |
| CCGGAATATCTGAGCCAGTT+TGG | - | tig0042325:3747-3766 | Msa1462490:intron | 50.0% | |
| GTCAGATATTCCAGGACGGA+GGG | - | tig0042325:3941-3960 | Msa1462490:intron | 50.0% | |
| ! | GGTTGGATCACTCGTTTTGC+AGG | + | tig0042325:4024-4043 | Msa1462490:intergenic | 50.0% |
| !! | TCAGGAACTTGGTTGGTGGT+TGG | + | tig0042325:4041-4060 | Msa1462490:intergenic | 50.0% |
| TCCCAAAGCTCGATCTACCA+TGG | - | tig0042325:4067-4086 | Msa1462490:intron | 50.0% | |
| AAGCTCAAGATGGTCCCTCA+AGG | - | tig0042325:4584-4603 | Msa1462490:intron | 50.0% | |
| AGCTCAAGATGGTCCCTCAA+GGG | - | tig0042325:4585-4604 | Msa1462490:intron | 50.0% | |
| GAGAGCTGTGAATCCCTTGA+GGG | + | tig0042325:4601-4620 | Msa1462490:intergenic | 50.0% | |
| GATCGGTCATGCTATCGTAG+AGG | - | tig0042325:4641-4660 | Msa1462490:intron | 50.0% | |
| ! | AGAGGAGCTTGTTCGAAAGG+TGG | - | tig0042325:4800-4819 | Msa1462490:intron | 50.0% |
| TGAGCTGAAGTCATGCGTGA+CGG | + | tig0042325:5383-5402 | Msa1462490:intergenic | 50.0% | |
| TAGCGAGGACCTTGTGCACT+GGG | - | tig0042325:1653-1672 | Msa1462490:CDS | 55.0% | |
| GAAACACGATCATGGGCTCG+TGG | - | tig0042325:2464-2483 | Msa1462490:intron | 55.0% | |
| AGGAAGCAGCTGGCAGACAA+AGG | + | tig0042325:2828-2847 | Msa1462490:intergenic | 55.0% | |
| CCAGTGATGTAGGAAGCAGC+TGG | + | tig0042325:2838-2857 | Msa1462490:intergenic | 55.0% | |
| CCAGCTGCTTCCTACATCAC+TGG | - | tig0042325:2835-2854 | Msa1462490:CDS | 55.0% | |
| AATGATGTCTCCCTCCGTCC+CGG | - | tig0042325:3728-3747 | Msa1462490:intron | 55.0% | |
| CTCAGATATTCCGGGACGGA+GGG | + | tig0042325:3741-3760 | Msa1462490:intergenic | 55.0% | |
| CTGGCTCAGATATTCCGGGA+CGG | + | tig0042325:3745-3764 | Msa1462490:intergenic | 55.0% | |
| GGTCAGATATTCCAGGACGG+AGG | - | tig0042325:3940-3959 | Msa1462490:intron | 55.0% | |
| ! | GGGGTGCCAAAAAACAACCC+TGG | - | tig0042325:4147-4166 | Msa1462490:intron | 55.0% |
| CGAGAGCTGTGAATCCCTTG+AGG | + | tig0042325:4602-4621 | Msa1462490:intergenic | 55.0% | |
| GGATTCACAGCTCTCGTCAC+CGG | - | tig0042325:4606-4625 | Msa1462490:intron | 55.0% | |
| ! | AGGGACTAGGGTTCTAACGC+CGG | - | tig0042325:5128-5147 | Msa1462490:intron | 55.0% |
| AGGAAGCAGCTGGCAGACAA+AGG | + | tig0042325:2828-2847 | Msa1462490:intergenic | 55.0% | |
| CCAGTGATGTAGGAAGCAGC+TGG | + | tig0042325:2838-2857 | Msa1462490:intergenic | 55.0% | |
| CCAGCTGCTTCCTACATCAC+TGG | - | tig0042325:2835-2854 | Msa1462490:CDS | 55.0% | |
| GCTGCTTACTCCACCTAGCG+AGG | - | tig0042325:1638-1657 | Msa1462490:CDS | 60.0% | |
| TGCACAAGGTCCTCGCTAGG+TGG | + | tig0042325:1651-1670 | Msa1462490:intergenic | 60.0% | |
| CAGTGCACAAGGTCCTCGCT+AGG | + | tig0042325:1654-1673 | Msa1462490:intergenic | 60.0% | |
| CTAGCGAGGACCTTGTGCAC+TGG | - | tig0042325:1652-1671 | Msa1462490:CDS | 60.0% | |
| GGAGCAACTGTGTTGCACCC+TGG | - | tig0042325:2264-2283 | Msa1462490:intron | 60.0% | |
| TCATGGGCTCGTGGCTCATC+TGG | - | tig0042325:2473-2492 | Msa1462490:intron | 60.0% | |
| GCTCAGATATTCCGGGACGG+AGG | + | tig0042325:3742-3761 | Msa1462490:intergenic | 60.0% | |
| GTTTCGTACTCCCTCCGTCC+TGG | + | tig0042325:3954-3973 | Msa1462490:intergenic | 60.0% | |
| TTCACAGCTCTCGTCACCGG+TGG | - | tig0042325:4609-4628 | Msa1462490:intron | 60.0% | |
| TCGTCACCGGTGGAACTCGT+GGG | - | tig0042325:4619-4638 | Msa1462490:intron | 60.0% | |
| ACCGGTGGAACTCGTGGGAT+CGG | - | tig0042325:4624-4643 | Msa1462490:intron | 60.0% | |
| ACCGATCCCACGAGTTCCAC+CGG | + | tig0042325:4628-4647 | Msa1462490:intergenic | 60.0% | |
| GGAGCAACTGTGTTGCACCG+TGG | - | tig0042325:5828-5847 | Msa1462490:intron | 60.0% | |
| CTCGTCACCGGTGGAACTCG+TGG | - | tig0042325:4618-4637 | Msa1462490:intron | 65.0% | |
| TGGCGACGGCCCAGTGCACA+AGG | + | tig0042325:1665-1684 | Msa1462490:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042325 | gene | 932 | 6554 | 932 | ID=Msa1462490;Name=Msa1462490 |
| tig0042325 | mRNA | 932 | 6554 | 932 | ID=Msa1462490-mRNA-1;Parent=Msa1462490;Name=Msa1462490-mRNA-1;_AED=0.35;_eAED=0.35;_QI=82|1|1|1|0.75|0.6|5|301|273 |
| tig0042325 | exon | 932 | 1433 | 932 | ID=Msa1462490-mRNA-1:exon:23683;Parent=Msa1462490-mRNA-1 |
| tig0042325 | exon | 1609 | 1715 | 1609 | ID=Msa1462490-mRNA-1:exon:23682;Parent=Msa1462490-mRNA-1 |
| tig0042325 | exon | 1821 | 2037 | 1821 | ID=Msa1462490-mRNA-1:exon:23681;Parent=Msa1462490-mRNA-1 |
| tig0042325 | exon | 2632 | 2987 | 2632 | ID=Msa1462490-mRNA-1:exon:23680;Parent=Msa1462490-mRNA-1 |
| tig0042325 | exon | 6532 | 6554 | 6532 | ID=Msa1462490-mRNA-1:exon:23679;Parent=Msa1462490-mRNA-1 |
| tig0042325 | five_prime_UTR | 6532 | 6554 | 6532 | ID=Msa1462490-mRNA-1:five_prime_utr;Parent=Msa1462490-mRNA-1 |
| tig0042325 | five_prime_UTR | 2929 | 2987 | 2929 | ID=Msa1462490-mRNA-1:five_prime_utr;Parent=Msa1462490-mRNA-1 |
| tig0042325 | CDS | 2632 | 2928 | 2632 | ID=Msa1462490-mRNA-1:cds;Parent=Msa1462490-mRNA-1 |
| tig0042325 | CDS | 1821 | 2037 | 1821 | ID=Msa1462490-mRNA-1:cds;Parent=Msa1462490-mRNA-1 |
| tig0042325 | CDS | 1609 | 1715 | 1609 | ID=Msa1462490-mRNA-1:cds;Parent=Msa1462490-mRNA-1 |
| tig0042325 | CDS | 1233 | 1433 | 1233 | ID=Msa1462490-mRNA-1:cds;Parent=Msa1462490-mRNA-1 |
| tig0042325 | three_prime_UTR | 932 | 1232 | 932 | ID=Msa1462490-mRNA-1:three_prime_utr;Parent=Msa1462490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
