Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293750 | XP_003629040.1 | 93.855 | 179 | 10 | 1 | 1 | 178 | 1 | 179 | 4.07e-95 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293750 | G7L7W4 | 93.855 | 179 | 10 | 1 | 1 | 178 | 1 | 179 | 1.94e-95 | 283 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220420 | Msa1293750 | 0.800583 | 1.346490e-48 | -8.615850e-47 |
| Msa1253430 | Msa1293750 | 0.841238 | 5.365376e-58 | -8.615850e-47 |
| Msa1253450 | Msa1293750 | 0.875328 | 3.359534e-68 | -8.615850e-47 |
| Msa1260610 | Msa1293750 | 0.803498 | 3.387255e-49 | -8.615850e-47 |
| Msa1275820 | Msa1293750 | 0.804008 | 2.655168e-49 | -8.615850e-47 |
| Msa0239030 | Msa1293750 | 0.809182 | 2.147139e-50 | -8.615850e-47 |
| Msa0316680 | Msa1293750 | 0.804128 | 2.506437e-49 | -8.615850e-47 |
| Msa1200420 | Msa1293750 | 0.923012 | 4.646506e-89 | -8.615850e-47 |
| Msa0537360 | Msa1293750 | 0.804144 | 2.487419e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293750 | MtrunA17_Chr8g0369901 | 93.855 | 179 | 10 | 1 | 1 | 178 | 1 | 179 | 3.74e-99 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCTAAAGTGGTTGAAAT+TGG | 0.250565 | 8_3:+51216741 | Msa1293750:CDS |
| TATATTAAGTATTGGTTTCA+TGG | 0.253486 | 8_3:+51216912 | Msa1293750:three_prime_UTR |
| GCTAGAAAATCGAGTAATTC+AGG | 0.254707 | 8_3:+51215978 | Msa1293750:CDS |
| ATTGGATCGTCTTGAGCTTC+TGG | 0.310419 | 8_3:+51215638 | Msa1293750:CDS |
| ATTGGATGCAAATGAGAATA+TGG | 0.320746 | 8_3:+51216491 | Msa1293750:CDS |
| ATAGCTGGAAAGCTAGAAAA+AGG | 0.330571 | 8_3:+51216459 | Msa1293750:CDS |
| CATTAAACTCACCATCTTGC+AGG | 0.336387 | 8_3:+51216674 | Msa1293750:CDS |
| AATCAAAGCAATGTCTAGAA+TGG | 0.406480 | 8_3:+51216705 | Msa1293750:CDS |
| TGTTGCCATTCACAAATGTT+TGG | 0.407820 | 8_3:+51215873 | Msa1293750:CDS |
| TGCAAATGAGAATATGGATA+TGG | 0.412766 | 8_3:+51216497 | Msa1293750:CDS |
| TCACCACAAAGGCACGTTGC+TGG | 0.417918 | 8_3:+51215942 | Msa1293750:CDS |
| TCAATTAATATATTAAGTAT+TGG | 0.421087 | 8_3:+51216904 | Msa1293750:three_prime_UTR |
| TGTCTAGAATGGGTTACAAT+AGG | 0.431528 | 8_3:+51216716 | Msa1293750:CDS |
| TTGTTCCAAACATTTGTGAA+TGG | 0.448955 | 8_3:-51215878 | None:intergenic |
| GATCCAGCAACGTGCCTTTG+TGG | 0.459396 | 8_3:-51215945 | None:intergenic |
| GAATGGGTTACAATAGGAAA+TGG | 0.469355 | 8_3:+51216722 | Msa1293750:CDS |
| TCTTCCACATCTATAATAGC+TGG | 0.475039 | 8_3:+51216444 | Msa1293750:CDS |
| TGGCTAAAGTGGTTGAAATT+GGG | 0.480310 | 8_3:+51216742 | Msa1293750:CDS |
| ATCAAAGCAATGTCTAGAAT+GGG | 0.486283 | 8_3:+51216706 | Msa1293750:CDS |
| GTAGGATAGCATTGTTGTGG+AGG | 0.497964 | 8_3:+51216645 | Msa1293750:intron |
| TCTTCAGCTGAGTATTGACT+TGG | 0.499669 | 8_3:+51216395 | Msa1293750:intron |
| ACAATAGGAAATGGCTAAAG+TGG | 0.506453 | 8_3:+51216731 | Msa1293750:CDS |
| CTTGTCGATTCTCCAACGAT+TGG | 0.532394 | 8_3:+51215620 | Msa1293750:CDS |
| CTGAGTATTGACTTGGACAT+GGG | 0.547034 | 8_3:+51216402 | Msa1293750:CDS |
| CTTTCCAGCTATTATAGATG+TGG | 0.555271 | 8_3:-51216448 | None:intergenic |
| GCTCAAGACGATCCAATCGT+TGG | 0.572417 | 8_3:-51215632 | None:intergenic |
| ATTAAACTCACCATCTTGCA+GGG | 0.587021 | 8_3:+51216675 | Msa1293750:CDS |
| AAAGTTACTTGTGTTATGAG+AGG | 0.587359 | 8_3:-51216546 | None:intergenic |
| ATTCTATGTGCCCTGCAAGA+TGG | 0.593541 | 8_3:-51216685 | None:intergenic |
| GCTGAGTATTGACTTGGACA+TGG | 0.601595 | 8_3:+51216401 | Msa1293750:intron |
| CAATCGTTGGAGAATCGACA+AGG | 0.612069 | 8_3:-51215619 | None:intergenic |
| TTTGAAGAGGTTCACCACAA+AGG | 0.635515 | 8_3:+51215931 | Msa1293750:CDS |
| CTTGTAGGATAGCATTGTTG+TGG | 0.638221 | 8_3:+51216642 | Msa1293750:intron |
| TGGACATGGGAAACACATCA+AGG | 0.640707 | 8_3:+51216415 | Msa1293750:CDS |
| AACAAGAACAACAATGCAAG+AGG | 0.640851 | 8_3:+51215896 | Msa1293750:CDS |
| TAGATGAATAATATTTACGT+AGG | 0.649252 | 8_3:+51216775 | Msa1293750:three_prime_UTR |
| AATCGTTGGAGAATCGACAA+GGG | 0.726740 | 8_3:-51215618 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAAAATAAAATTATG+TGG | - | chr8_3:51216015-51216034 | None:intergenic | 10.0% |
| !! | CTATTAGTAAAAAAATTATA+TGG | - | chr8_3:51216609-51216628 | None:intergenic | 10.0% |
| !! | TCAATTAATATATTAAGTAT+TGG | + | chr8_3:51216904-51216923 | Msa1293750:three_prime_UTR | 10.0% |
| !! | AAACAAAAAATAAAATTATG+TGG | - | chr8_3:51216015-51216034 | None:intergenic | 10.0% |
| !! | CTATTAGTAAAAAAATTATA+TGG | - | chr8_3:51216609-51216628 | None:intergenic | 10.0% |
| !! | TCAATTAATATATTAAGTAT+TGG | + | chr8_3:51216904-51216923 | Msa1293750:three_prime_UTR | 10.0% |
| !! | TTTAATTAATGACCATTATA+TGG | - | chr8_3:51215789-51215808 | None:intergenic | 15.0% |
| !!! | TAGAAAAATGTATACTTTTT+TGG | - | chr8_3:51216169-51216188 | None:intergenic | 15.0% |
| !!! | AAAAGTATACATTTTTCTAA+AGG | + | chr8_3:51216170-51216189 | Msa1293750:intron | 15.0% |
| !!! | AAATAATATCGATTTTACAT+TGG | - | chr8_3:51216207-51216226 | None:intergenic | 15.0% |
| !!! | TTTTCAATAGTTAATTGTTT+AGG | + | chr8_3:51216877-51216896 | Msa1293750:three_prime_UTR | 15.0% |
| !! | TTTAATTAATGACCATTATA+TGG | - | chr8_3:51215789-51215808 | None:intergenic | 15.0% |
| !!! | TAGAAAAATGTATACTTTTT+TGG | - | chr8_3:51216169-51216188 | None:intergenic | 15.0% |
| !!! | AAAAGTATACATTTTTCTAA+AGG | + | chr8_3:51216170-51216189 | Msa1293750:intron | 15.0% |
| !!! | AAATAATATCGATTTTACAT+TGG | - | chr8_3:51216207-51216226 | None:intergenic | 15.0% |
| !!! | TTTTCAATAGTTAATTGTTT+AGG | + | chr8_3:51216877-51216896 | Msa1293750:three_prime_UTR | 15.0% |
| !! | TTATGTTAAGATCCATATAA+TGG | + | chr8_3:51215774-51215793 | Msa1293750:intron | 20.0% |
| !!! | AAAAATGTATACTTTTTTGG+AGG | - | chr8_3:51216166-51216185 | None:intergenic | 20.0% |
| !!! | TGAATTTTTATCTCTAACAT+GGG | - | chr8_3:51216290-51216309 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTATCTCTAACA+TGG | - | chr8_3:51216291-51216310 | None:intergenic | 20.0% |
| !! | TAGATGAATAATATTTACGT+AGG | + | chr8_3:51216775-51216794 | Msa1293750:three_prime_UTR | 20.0% |
| !!! | TATATTAAGTATTGGTTTCA+TGG | + | chr8_3:51216912-51216931 | Msa1293750:three_prime_UTR | 20.0% |
| !!! | TTCATGGATTAAATTGTTTT+TGG | + | chr8_3:51216928-51216947 | Msa1293750:three_prime_UTR | 20.0% |
| !! | TTATGTTAAGATCCATATAA+TGG | + | chr8_3:51215774-51215793 | Msa1293750:intron | 20.0% |
| !!! | AAAAATGTATACTTTTTTGG+AGG | - | chr8_3:51216166-51216185 | None:intergenic | 20.0% |
| !!! | TGAATTTTTATCTCTAACAT+GGG | - | chr8_3:51216290-51216309 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTATCTCTAACA+TGG | - | chr8_3:51216291-51216310 | None:intergenic | 20.0% |
| !! | TAGATGAATAATATTTACGT+AGG | + | chr8_3:51216775-51216794 | Msa1293750:three_prime_UTR | 20.0% |
| !!! | TATATTAAGTATTGGTTTCA+TGG | + | chr8_3:51216912-51216931 | Msa1293750:three_prime_UTR | 20.0% |
| !!! | TTCATGGATTAAATTGTTTT+TGG | + | chr8_3:51216928-51216947 | Msa1293750:three_prime_UTR | 20.0% |
| !!! | TAATATCGATTTTACATTGG+AGG | - | chr8_3:51216204-51216223 | None:intergenic | 25.0% |
| ! | TATATATCACTTTGTGCTTA+TGG | - | chr8_3:51216335-51216354 | None:intergenic | 25.0% |
| !!! | TTATATGGAAGTGTACTTTT+GGG | - | chr8_3:51216594-51216613 | None:intergenic | 25.0% |
| !!! | ATTATATGGAAGTGTACTTT+TGG | - | chr8_3:51216595-51216614 | None:intergenic | 25.0% |
| ! | CTATTGAAAAATATTGATCG+AGG | - | chr8_3:51216867-51216886 | None:intergenic | 25.0% |
| !!! | TAATATCGATTTTACATTGG+AGG | - | chr8_3:51216204-51216223 | None:intergenic | 25.0% |
| ! | TATATATCACTTTGTGCTTA+TGG | - | chr8_3:51216335-51216354 | None:intergenic | 25.0% |
| !!! | TTATATGGAAGTGTACTTTT+GGG | - | chr8_3:51216594-51216613 | None:intergenic | 25.0% |
| !!! | ATTATATGGAAGTGTACTTT+TGG | - | chr8_3:51216595-51216614 | None:intergenic | 25.0% |
| ! | CTATTGAAAAATATTGATCG+AGG | - | chr8_3:51216867-51216886 | None:intergenic | 25.0% |
| TTGTTCCAAACATTTGTGAA+TGG | - | chr8_3:51215881-51215900 | None:intergenic | 30.0% | |
| ACGTGTTTGCAAAAAACATA+AGG | + | chr8_3:51216118-51216137 | Msa1293750:intron | 30.0% | |
| TGTTTGCAAAAAACATAAGG+TGG | + | chr8_3:51216121-51216140 | Msa1293750:intron | 30.0% | |
| ATTGGATGCAAATGAGAATA+TGG | + | chr8_3:51216491-51216510 | Msa1293750:CDS | 30.0% | |
| TGCAAATGAGAATATGGATA+TGG | + | chr8_3:51216497-51216516 | Msa1293750:CDS | 30.0% | |
| AAAGTTACTTGTGTTATGAG+AGG | - | chr8_3:51216549-51216568 | None:intergenic | 30.0% | |
| !! | TATATGGAAGTGTACTTTTG+GGG | - | chr8_3:51216593-51216612 | None:intergenic | 30.0% |
| AATCAAAGCAATGTCTAGAA+TGG | + | chr8_3:51216705-51216724 | Msa1293750:CDS | 30.0% | |
| ! | ATCAAAGCAATGTCTAGAAT+GGG | + | chr8_3:51216706-51216725 | Msa1293750:CDS | 30.0% |
| TTGTTCCAAACATTTGTGAA+TGG | - | chr8_3:51215881-51215900 | None:intergenic | 30.0% | |
| ACGTGTTTGCAAAAAACATA+AGG | + | chr8_3:51216118-51216137 | Msa1293750:intron | 30.0% | |
| TGTTTGCAAAAAACATAAGG+TGG | + | chr8_3:51216121-51216140 | Msa1293750:intron | 30.0% | |
| ATTGGATGCAAATGAGAATA+TGG | + | chr8_3:51216491-51216510 | Msa1293750:CDS | 30.0% | |
| TGCAAATGAGAATATGGATA+TGG | + | chr8_3:51216497-51216516 | Msa1293750:CDS | 30.0% | |
| AAAGTTACTTGTGTTATGAG+AGG | - | chr8_3:51216549-51216568 | None:intergenic | 30.0% | |
| !! | TATATGGAAGTGTACTTTTG+GGG | - | chr8_3:51216593-51216612 | None:intergenic | 30.0% |
| AATCAAAGCAATGTCTAGAA+TGG | + | chr8_3:51216705-51216724 | Msa1293750:CDS | 30.0% | |
| ! | ATCAAAGCAATGTCTAGAAT+GGG | + | chr8_3:51216706-51216725 | Msa1293750:CDS | 30.0% |
| GAAACAGTAGCTGCATTATT+AGG | - | chr8_3:51215813-51215832 | None:intergenic | 35.0% | |
| TGTTGCCATTCACAAATGTT+TGG | + | chr8_3:51215873-51215892 | Msa1293750:CDS | 35.0% | |
| AACAAGAACAACAATGCAAG+AGG | + | chr8_3:51215896-51215915 | Msa1293750:CDS | 35.0% | |
| !! | GTTGTCCTATGTTTTTGAAG+AGG | + | chr8_3:51215918-51215937 | Msa1293750:CDS | 35.0% |
| GTGAACCTCTTCAAAAACAT+AGG | - | chr8_3:51215926-51215945 | None:intergenic | 35.0% | |
| GCTAGAAAATCGAGTAATTC+AGG | + | chr8_3:51215978-51215997 | Msa1293750:CDS | 35.0% | |
| AACACGTGAAACAAGAGTTT+GGG | - | chr8_3:51216105-51216124 | None:intergenic | 35.0% | |
| AAACACGTGAAACAAGAGTT+TGG | - | chr8_3:51216106-51216125 | None:intergenic | 35.0% | |
| GAGGTGTAAAACAAGAGTTT+GGG | - | chr8_3:51216147-51216166 | None:intergenic | 35.0% | |
| TGCTTATGGAACTTAGGATA+TGG | - | chr8_3:51216321-51216340 | None:intergenic | 35.0% | |
| ACTTTGTGCTTATGGAACTT+AGG | - | chr8_3:51216327-51216346 | None:intergenic | 35.0% | |
| TCTTCCACATCTATAATAGC+TGG | + | chr8_3:51216444-51216463 | Msa1293750:CDS | 35.0% | |
| CTTTCCAGCTATTATAGATG+TGG | - | chr8_3:51216451-51216470 | None:intergenic | 35.0% | |
| ATAGCTGGAAAGCTAGAAAA+AGG | + | chr8_3:51216459-51216478 | Msa1293750:CDS | 35.0% | |
| AGAAAAAGGATCAGGATCAT+TGG | + | chr8_3:51216473-51216492 | Msa1293750:CDS | 35.0% | |
| AGTCATCTTTGTGATCTTGT+AGG | + | chr8_3:51216627-51216646 | Msa1293750:intron | 35.0% | |
| ATTAAACTCACCATCTTGCA+GGG | + | chr8_3:51216675-51216694 | Msa1293750:CDS | 35.0% | |
| !! | TGTCTAGAATGGGTTACAAT+AGG | + | chr8_3:51216716-51216735 | Msa1293750:CDS | 35.0% |
| !! | GAATGGGTTACAATAGGAAA+TGG | + | chr8_3:51216722-51216741 | Msa1293750:CDS | 35.0% |
| ACAATAGGAAATGGCTAAAG+TGG | + | chr8_3:51216731-51216750 | Msa1293750:CDS | 35.0% | |
| ATGGCTAAAGTGGTTGAAAT+TGG | + | chr8_3:51216741-51216760 | Msa1293750:CDS | 35.0% | |
| TGGCTAAAGTGGTTGAAATT+GGG | + | chr8_3:51216742-51216761 | Msa1293750:CDS | 35.0% | |
| GAAACAGTAGCTGCATTATT+AGG | - | chr8_3:51215813-51215832 | None:intergenic | 35.0% | |
| TGTTGCCATTCACAAATGTT+TGG | + | chr8_3:51215873-51215892 | Msa1293750:CDS | 35.0% | |
| AACAAGAACAACAATGCAAG+AGG | + | chr8_3:51215896-51215915 | Msa1293750:CDS | 35.0% | |
| !! | GTTGTCCTATGTTTTTGAAG+AGG | + | chr8_3:51215918-51215937 | Msa1293750:CDS | 35.0% |
| GTGAACCTCTTCAAAAACAT+AGG | - | chr8_3:51215926-51215945 | None:intergenic | 35.0% | |
| GCTAGAAAATCGAGTAATTC+AGG | + | chr8_3:51215978-51215997 | Msa1293750:CDS | 35.0% | |
| AACACGTGAAACAAGAGTTT+GGG | - | chr8_3:51216105-51216124 | None:intergenic | 35.0% | |
| AAACACGTGAAACAAGAGTT+TGG | - | chr8_3:51216106-51216125 | None:intergenic | 35.0% | |
| GAGGTGTAAAACAAGAGTTT+GGG | - | chr8_3:51216147-51216166 | None:intergenic | 35.0% | |
| TGCTTATGGAACTTAGGATA+TGG | - | chr8_3:51216321-51216340 | None:intergenic | 35.0% | |
| ACTTTGTGCTTATGGAACTT+AGG | - | chr8_3:51216327-51216346 | None:intergenic | 35.0% | |
| TCTTCCACATCTATAATAGC+TGG | + | chr8_3:51216444-51216463 | Msa1293750:CDS | 35.0% | |
| CTTTCCAGCTATTATAGATG+TGG | - | chr8_3:51216451-51216470 | None:intergenic | 35.0% | |
| ATAGCTGGAAAGCTAGAAAA+AGG | + | chr8_3:51216459-51216478 | Msa1293750:CDS | 35.0% | |
| AGAAAAAGGATCAGGATCAT+TGG | + | chr8_3:51216473-51216492 | Msa1293750:CDS | 35.0% | |
| AGTCATCTTTGTGATCTTGT+AGG | + | chr8_3:51216627-51216646 | Msa1293750:intron | 35.0% | |
| ATTAAACTCACCATCTTGCA+GGG | + | chr8_3:51216675-51216694 | Msa1293750:CDS | 35.0% | |
| !! | TGTCTAGAATGGGTTACAAT+AGG | + | chr8_3:51216716-51216735 | Msa1293750:CDS | 35.0% |
| !! | GAATGGGTTACAATAGGAAA+TGG | + | chr8_3:51216722-51216741 | Msa1293750:CDS | 35.0% |
| ACAATAGGAAATGGCTAAAG+TGG | + | chr8_3:51216731-51216750 | Msa1293750:CDS | 35.0% | |
| ATGGCTAAAGTGGTTGAAAT+TGG | + | chr8_3:51216741-51216760 | Msa1293750:CDS | 35.0% | |
| TGGCTAAAGTGGTTGAAATT+GGG | + | chr8_3:51216742-51216761 | Msa1293750:CDS | 35.0% | |
| AATCGTTGGAGAATCGACAA+GGG | - | chr8_3:51215621-51215640 | None:intergenic | 40.0% | |
| TTTGAAGAGGTTCACCACAA+AGG | + | chr8_3:51215931-51215950 | Msa1293750:CDS | 40.0% | |
| CAGACACGATGATACATAGA+CGG | - | chr8_3:51216066-51216085 | None:intergenic | 40.0% | |
| ATCGTGTCTGCCAAAACATA+TGG | + | chr8_3:51216076-51216095 | Msa1293750:intron | 40.0% | |
| ! | GGAGGTGTAAAACAAGAGTT+TGG | - | chr8_3:51216148-51216167 | None:intergenic | 40.0% |
| GTAACATCTTCGTAGCTTGA+TGG | + | chr8_3:51216253-51216272 | Msa1293750:intron | 40.0% | |
| !! | TCTTCAGCTGAGTATTGACT+TGG | + | chr8_3:51216395-51216414 | Msa1293750:intron | 40.0% |
| !! | CTGAGTATTGACTTGGACAT+GGG | + | chr8_3:51216402-51216421 | Msa1293750:CDS | 40.0% |
| GGAAAGCTAGAAAAAGGATC+AGG | + | chr8_3:51216465-51216484 | Msa1293750:CDS | 40.0% | |
| CTTGTAGGATAGCATTGTTG+TGG | + | chr8_3:51216642-51216661 | Msa1293750:intron | 40.0% | |
| CATTAAACTCACCATCTTGC+AGG | + | chr8_3:51216674-51216693 | Msa1293750:CDS | 40.0% | |
| AATCGTTGGAGAATCGACAA+GGG | - | chr8_3:51215621-51215640 | None:intergenic | 40.0% | |
| TTTGAAGAGGTTCACCACAA+AGG | + | chr8_3:51215931-51215950 | Msa1293750:CDS | 40.0% | |
| CAGACACGATGATACATAGA+CGG | - | chr8_3:51216066-51216085 | None:intergenic | 40.0% | |
| ATCGTGTCTGCCAAAACATA+TGG | + | chr8_3:51216076-51216095 | Msa1293750:intron | 40.0% | |
| ! | GGAGGTGTAAAACAAGAGTT+TGG | - | chr8_3:51216148-51216167 | None:intergenic | 40.0% |
| GTAACATCTTCGTAGCTTGA+TGG | + | chr8_3:51216253-51216272 | Msa1293750:intron | 40.0% | |
| !! | TCTTCAGCTGAGTATTGACT+TGG | + | chr8_3:51216395-51216414 | Msa1293750:intron | 40.0% |
| !! | CTGAGTATTGACTTGGACAT+GGG | + | chr8_3:51216402-51216421 | Msa1293750:CDS | 40.0% |
| GGAAAGCTAGAAAAAGGATC+AGG | + | chr8_3:51216465-51216484 | Msa1293750:CDS | 40.0% | |
| CTTGTAGGATAGCATTGTTG+TGG | + | chr8_3:51216642-51216661 | Msa1293750:intron | 40.0% | |
| CATTAAACTCACCATCTTGC+AGG | + | chr8_3:51216674-51216693 | Msa1293750:CDS | 40.0% | |
| CAATCGTTGGAGAATCGACA+AGG | - | chr8_3:51215622-51215641 | None:intergenic | 45.0% | |
| !! | CTTGTCGATTCTCCAACGAT+TGG | + | chr8_3:51215620-51215639 | Msa1293750:CDS | 45.0% |
| ATTGGATCGTCTTGAGCTTC+TGG | + | chr8_3:51215638-51215657 | Msa1293750:CDS | 45.0% | |
| ! | GTTTGGGTCGCCATATGTTT+TGG | - | chr8_3:51216089-51216108 | None:intergenic | 45.0% |
| !! | GCTGAGTATTGACTTGGACA+TGG | + | chr8_3:51216401-51216420 | Msa1293750:intron | 45.0% |
| TGGACATGGGAAACACATCA+AGG | + | chr8_3:51216415-51216434 | Msa1293750:CDS | 45.0% | |
| GTAGGATAGCATTGTTGTGG+AGG | + | chr8_3:51216645-51216664 | Msa1293750:intron | 45.0% | |
| ATTCTATGTGCCCTGCAAGA+TGG | - | chr8_3:51216688-51216707 | None:intergenic | 45.0% | |
| CAATCGTTGGAGAATCGACA+AGG | - | chr8_3:51215622-51215641 | None:intergenic | 45.0% | |
| !! | CTTGTCGATTCTCCAACGAT+TGG | + | chr8_3:51215620-51215639 | Msa1293750:CDS | 45.0% |
| ATTGGATCGTCTTGAGCTTC+TGG | + | chr8_3:51215638-51215657 | Msa1293750:CDS | 45.0% | |
| ! | GTTTGGGTCGCCATATGTTT+TGG | - | chr8_3:51216089-51216108 | None:intergenic | 45.0% |
| !! | GCTGAGTATTGACTTGGACA+TGG | + | chr8_3:51216401-51216420 | Msa1293750:intron | 45.0% |
| TGGACATGGGAAACACATCA+AGG | + | chr8_3:51216415-51216434 | Msa1293750:CDS | 45.0% | |
| GTAGGATAGCATTGTTGTGG+AGG | + | chr8_3:51216645-51216664 | Msa1293750:intron | 45.0% | |
| ATTCTATGTGCCCTGCAAGA+TGG | - | chr8_3:51216688-51216707 | None:intergenic | 45.0% | |
| !!! | TTTTATTTTATTTTTTTGAA+AGG | + | chr8_3:51215738-51215757 | Msa1293750:intron | 5.0% |
| !!! | TTTTATTTTATTTTTTTGAA+AGG | + | chr8_3:51215738-51215757 | Msa1293750:intron | 5.0% |
| GCTCAAGACGATCCAATCGT+TGG | - | chr8_3:51215635-51215654 | None:intergenic | 50.0% | |
| GCTCAAGACGATCCAATCGT+TGG | - | chr8_3:51215635-51215654 | None:intergenic | 50.0% | |
| ! | TCACCACAAAGGCACGTTGC+TGG | + | chr8_3:51215942-51215961 | Msa1293750:CDS | 55.0% |
| GATCCAGCAACGTGCCTTTG+TGG | - | chr8_3:51215948-51215967 | None:intergenic | 55.0% | |
| ! | TCACCACAAAGGCACGTTGC+TGG | + | chr8_3:51215942-51215961 | Msa1293750:CDS | 55.0% |
| GATCCAGCAACGTGCCTTTG+TGG | - | chr8_3:51215948-51215967 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 51215582 | 51216985 | 51215582 | ID=Msa1293750;Name=Msa1293750 |
| chr8_3 | mRNA | 51215582 | 51216985 | 51215582 | ID=Msa1293750-mRNA-1;Parent=Msa1293750;Name=Msa1293750-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.75|1|1|1|4|214|178 |
| chr8_3 | exon | 51215582 | 51215659 | 51215582 | ID=Msa1293750-mRNA-1:exon:14279;Parent=Msa1293750-mRNA-1 |
| chr8_3 | exon | 51215823 | 51215999 | 51215823 | ID=Msa1293750-mRNA-1:exon:14280;Parent=Msa1293750-mRNA-1 |
| chr8_3 | exon | 51216402 | 51216560 | 51216402 | ID=Msa1293750-mRNA-1:exon:14281;Parent=Msa1293750-mRNA-1 |
| chr8_3 | exon | 51216649 | 51216985 | 51216649 | ID=Msa1293750-mRNA-1:exon:14282;Parent=Msa1293750-mRNA-1 |
| chr8_3 | CDS | 51215582 | 51215659 | 51215582 | ID=Msa1293750-mRNA-1:cds;Parent=Msa1293750-mRNA-1 |
| chr8_3 | CDS | 51215823 | 51215999 | 51215823 | ID=Msa1293750-mRNA-1:cds;Parent=Msa1293750-mRNA-1 |
| chr8_3 | CDS | 51216402 | 51216560 | 51216402 | ID=Msa1293750-mRNA-1:cds;Parent=Msa1293750-mRNA-1 |
| chr8_3 | CDS | 51216649 | 51216771 | 51216649 | ID=Msa1293750-mRNA-1:cds;Parent=Msa1293750-mRNA-1 |
| chr8_3 | three_prime_UTR | 51216772 | 51216985 | 51216772 | ID=Msa1293750-mRNA-1:three_prime_utr;Parent=Msa1293750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
