AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0316680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316680 MtrunA17_Chr2g0289201 97.619 378 5 3 1 378 1 374 0.0 761
Msa0316680 MtrunA17_Chr5g0439391 64.259 263 79 4 121 378 46 298 4.12e-103 306
Msa0316680 MtrunA17_Chr1g0151961 58.039 255 93 3 118 362 116 366 5.51e-90 275
Msa0316680 MtrunA17_Chr5g0413201 53.878 245 111 1 111 353 62 306 3.47e-83 256
Msa0316680 MtrunA17_Chr1g0192791 49.402 251 107 5 116 353 14 257 5.22e-67 213
Msa0316680 MtrunA17_Chr1g0149651 31.890 254 132 6 122 341 174 420 6.83e-37 138
Msa0316680 MtrunA17_Chr2g0305101 30.739 257 149 6 112 341 85 339 4.50e-36 135
Msa0316680 MtrunA17_Chr3g0137241 31.600 250 140 6 122 341 107 355 2.93e-35 132
Msa0316680 MtrunA17_Chr4g0065241 30.576 278 167 6 90 341 38 315 6.21e-35 131
Msa0316680 MtrunA17_Chr5g0398181 28.516 256 142 5 121 341 27 276 1.61e-29 115
Msa0316680 MtrunA17_Chr4g0008591 42.667 75 43 0 269 343 347 421 2.34e-12 68.6
Msa0316680 MtrunA17_Chr3g0141941 39.535 86 46 2 258 343 327 406 5.43e-12 67.0
Msa0316680 MtrunA17_Chr7g0240371 48.333 60 31 0 284 343 307 366 5.99e-12 67.0
Msa0316680 MtrunA17_Chr1g0155681 39.535 86 46 2 258 343 338 417 9.41e-12 66.6
Msa0316680 MtrunA17_Chr8g0373801 39.560 91 50 3 260 347 554 642 1.12e-11 66.6
Msa0316680 MtrunA17_Chr3g0141931 42.254 71 41 0 273 343 339 409 1.83e-11 65.5
Msa0316680 MtrunA17_Chr4g0025521 46.667 60 32 0 284 343 404 463 2.06e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316680 AT1G62360.1 79.087 263 49 5 121 378 121 382 1.50e-132 384
Msa0316680 AT4G08150.1 52.427 309 125 5 68 362 85 385 1.59e-90 278
Msa0316680 AT1G23380.1 49.609 256 109 3 117 362 81 326 1.35e-80 250
Msa0316680 AT1G70510.1 50.410 244 121 0 117 360 65 308 3.28e-80 248
Msa0316680 AT1G23380.2 49.225 258 109 4 117 362 81 328 1.18e-78 245
Msa0316680 AT1G70510.2 49.597 248 121 1 117 360 65 312 6.44e-78 243
Msa0316680 AT4G32040.2 27.424 361 220 6 21 341 4 362 2.73e-42 152
Msa0316680 AT4G32040.1 27.424 361 220 6 21 341 4 362 3.93e-42 152
Msa0316680 AT5G25220.2 32.245 245 140 5 122 341 160 403 4.53e-40 147
Msa0316680 AT5G25220.1 32.245 245 140 5 122 341 160 403 4.62e-40 147
Msa0316680 AT5G11060.1 31.020 245 143 6 122 341 124 367 8.93e-36 135
Msa0316680 AT1G62990.1 30.924 249 142 6 121 341 29 275 1.36e-31 121
Msa0316680 AT1G75430.1 49.091 55 28 0 289 343 209 263 2.37e-11 64.3
Msa0316680 AT5G02030.1 46.667 60 32 0 284 343 350 409 2.96e-11 65.5
Msa0316680 AT1G19700.1 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0316680 AT1G19700.3 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0316680 AT1G19700.5 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0316680 AT1G19700.4 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0316680 AT1G19700.2 46.667 60 32 0 284 343 353 412 4.26e-11 64.7
Msa0316680 AT4G36870.2 39.024 82 46 2 264 343 480 559 7.84e-11 64.3
Msa0316680 AT4G36870.1 39.024 82 46 2 264 343 480 559 7.84e-11 64.3
Msa0316680 AT2G27220.1 45.000 60 33 0 284 343 230 289 9.52e-11 63.5
Msa0316680 AT2G27220.3 45.000 60 33 0 284 343 230 289 9.52e-11 63.5

Find 113 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTATTGTTAGTGGAATT+AGG 0.210507 2_4:+13862594 None:intergenic
AGAACTTTCCAAACCCTTAA+AGG 0.230018 2_4:-13861932 Msa0316680:CDS
ATTAGTATTGTTGTGGTTAT+TGG 0.247015 2_4:+13862650 None:intergenic
TCTTATGTGATGGGTGCTTT+TGG 0.272814 2_4:-13862759 Msa0316680:CDS
AGCAGAAGACAGGGAATTAA+AGG 0.275275 2_4:-13858497 Msa0316680:CDS
CATAGCTTCCTTTAAGGGTT+TGG 0.275443 2_4:+13861924 None:intergenic
AATTGTTGCCTTGCCTCTTT+TGG 0.282916 2_4:+13858394 None:intergenic
TTGTGGTTATTGGAATTTAT+TGG 0.285636 2_4:+13862660 None:intergenic
TGGTTTAGGTTACTATTTCA+TGG 0.291622 2_4:-13862502 Msa0316680:CDS
CATCAAAACACTCCTGGTTT+AGG 0.312805 2_4:-13862516 Msa0316680:CDS
AAAAGCATAGCTTCCTTTAA+GGG 0.321776 2_4:+13861919 None:intergenic
TCTTCTTCTTCAGATAATAT+TGG 0.323037 2_4:-13861856 Msa0316680:intron
TATTATTGTTAGTGGAATTA+GGG 0.324374 2_4:+13862595 None:intergenic
ATCTGACCTAGAAGGCAAAA+AGG 0.361937 2_4:-13862865 Msa0316680:five_prime_UTR
TAACCCTACGTTACGTTGTA+AGG 0.362683 2_4:-13857287 Msa0316680:three_prime_UTR
AAGCCTGCACAGATTTCCTT+TGG 0.372354 2_4:+13863124 None:intergenic
TTCTTCTTATTCTTATGTGA+TGG 0.373753 2_4:-13862769 Msa0316680:CDS
GCAGTTGGATCAGGTTGTTT+AGG 0.376419 2_4:-13862018 Msa0316680:CDS
GTGATTGTTATTATTGTTAG+TGG 0.377361 2_4:+13862587 None:intergenic
TCAATGGAGGGTAGTTCTAA+TGG 0.389732 2_4:-13862795 Msa0316680:CDS
GCTTGTGGTGTTAAAAGTCT+TGG 0.407936 2_4:-13857317 Msa0316680:three_prime_UTR
GAAGGTTGAGTTACAGAAGA+AGG 0.409072 2_4:+13863319 None:intergenic
ATCAGAAGCAAATAAACAAC+TGG 0.411205 2_4:-13857498 Msa0316680:CDS
TCTTCTTATTCTTATGTGAT+GGG 0.426756 2_4:-13862768 Msa0316680:CDS
CAAGGCAACAATTGCTTGAA+TGG 0.428670 2_4:-13858384 Msa0316680:CDS
AACCTTGCCACCACTTCACT+TGG 0.434594 2_4:+13862081 None:intergenic
CACACAAGGGTCACCCGCCC+GGG 0.436593 2_4:+13862959 None:intergenic
TCCAGCTCTAGATCAGTTCA+TGG 0.439689 2_4:-13861989 Msa0316680:CDS
GTGAGGATGAGCCATGATCT+TGG 0.442354 2_4:+13862425 None:intergenic
AAGAAGAAGAAGAGCTTCCA+TGG 0.445455 2_4:+13862466 None:intergenic
AATTCCCTGTCTTCTGCTTG+AGG 0.446914 2_4:+13858502 None:intergenic
AGAGGTGTTGTTATTACAGT+TGG 0.455218 2_4:+13862560 None:intergenic
AGCAAGAGTTTATGAAGAAA+AGG 0.455849 2_4:-13858432 Msa0316680:CDS
AGAAAATACAGTGGATACTT+AGG 0.456169 2_4:-13858463 Msa0316680:CDS
TCACACAAGGGTCACCCGCC+CGG 0.458954 2_4:+13862958 None:intergenic
ACTAAAGGCATCATCATCAT+TGG 0.476116 2_4:+13862711 None:intergenic
CTCTTTGTCTCTCTAGCTAG+TGG 0.477469 2_4:+13863219 None:intergenic
TCCTCACTATCACCGTCTCT+TGG 0.481181 2_4:-13862409 Msa0316680:CDS
TTCAGAGGACATGCAGTTTG+TGG 0.481599 2_4:-13857443 Msa0316680:CDS
TATTAGACGGTTCTTTATGA+AGG 0.485627 2_4:-13857127 Msa0316680:three_prime_UTR
GTGAGTGAGTATTAATTCAA+TGG 0.487645 2_4:-13862811 Msa0316680:exon
TAGATCCTCAAGCAGAAGAC+AGG 0.488640 2_4:-13858507 Msa0316680:CDS
TTCTGTCAAATCCAAGATCA+TGG 0.491565 2_4:-13862436 Msa0316680:CDS
CTTGTAGTGAAGGTGGAGAT+AGG 0.494451 2_4:-13858576 Msa0316680:CDS
TTTCCAAAGGAAATCTGTGC+AGG 0.494548 2_4:-13863127 Msa0316680:five_prime_UTR
TCAATCAAAGGAAACGGCAC+TGG 0.497928 2_4:-13857471 Msa0316680:CDS
CTGGCTCTAGCAGAGTCAAC+AGG 0.498247 2_4:-13857526 Msa0316680:CDS
ATGTGCAACTGCAGTGAGAA+TGG 0.501403 2_4:-13862049 Msa0316680:CDS
ATTGTTAGTGGAATTAGGGA+TGG 0.507470 2_4:+13862599 None:intergenic
GGTGGAGATGCAGTTGGATC+AGG 0.509504 2_4:-13862027 Msa0316680:CDS
GAAGGGTTAGTGTGAGGCAT+TGG 0.510312 2_4:+13863337 None:intergenic
AAGGTTGAGTTACAGAAGAA+GGG 0.511993 2_4:+13863320 None:intergenic
GGACATGCAGTTTGTGGTGA+TGG 0.522795 2_4:-13857437 Msa0316680:CDS
GCAGAAGACAGGGAATTAAA+GGG 0.524288 2_4:-13858496 Msa0316680:CDS
AGCCTACATCAACTGTCAAA+AGG 0.527463 2_4:-13862385 Msa0316680:intron
AAAAGGAAAGCTTCCAAAAG+AGG 0.530019 2_4:-13858407 Msa0316680:CDS
TAGTGGAATTAGGGATGGGA+AGG 0.531021 2_4:+13862604 None:intergenic
GGTTTATCAATCAAAGGAAA+CGG 0.544135 2_4:-13857477 Msa0316680:CDS
AGTGAAGGTGGAGATAGGAA+TGG 0.544711 2_4:-13858571 Msa0316680:CDS
ATAACAGGAATCACAGAAGC+TGG 0.544820 2_4:-13857545 Msa0316680:intron
AATAACCATCAAAACACTCC+TGG 0.547863 2_4:-13862522 Msa0316680:CDS
TCCATGAACTGATCTAGAGC+TGG 0.552608 2_4:+13861988 None:intergenic
ATTACCTCGGTGCTTGCTTG+TGG 0.553766 2_4:-13857332 Msa0316680:three_prime_UTR
TACTTCTTCATGTAACTGAC+TGG 0.555243 2_4:-13863065 Msa0316680:five_prime_UTR
TTGTTAGTGGAATTAGGGAT+GGG 0.555961 2_4:+13862600 None:intergenic
ATGTAATAGTGTGGATGACT+TGG 0.557999 2_4:+13857412 None:intergenic
TGTTTGCATTAGTATTGTTG+TGG 0.559213 2_4:+13862643 None:intergenic
AGTGAGTATTAATTCAATGG+AGG 0.559921 2_4:-13862808 Msa0316680:exon
ACAACTGGTTTATCAATCAA+AGG 0.560044 2_4:-13857483 Msa0316680:CDS
TTTGAATCATTAAAATAGCG+AGG 0.565440 2_4:-13857165 Msa0316680:three_prime_UTR
CACCAAGTGAAGTGGTGGCA+AGG 0.566973 2_4:-13862083 Msa0316680:CDS
TGATGAGATGAAGTGACTAA+AGG 0.572274 2_4:+13862696 None:intergenic
ATATGATCAGCTTGTAGTGA+AGG 0.580233 2_4:-13858586 Msa0316680:intron
AAAGGCATCATCATCATTGG+AGG 0.581233 2_4:+13862714 None:intergenic
AAGTCATCCACACTATTACA+TGG 0.581325 2_4:-13857410 Msa0316680:CDS
CATGGTGTTAGATAGATCCA+TGG 0.582210 2_4:+13857363 None:intergenic
ATAAGCTGCTGGTTATTAGA+CGG 0.585249 2_4:-13857140 Msa0316680:three_prime_UTR
ATAGCGAGGAAATAAGCTGC+TGG 0.585397 2_4:-13857151 Msa0316680:three_prime_UTR
TACATGAAGAAGTAGTGAAG+AGG 0.589580 2_4:+13863074 None:intergenic
TGTGCAACTGCAGTGAGAAT+GGG 0.589860 2_4:-13862048 Msa0316680:CDS
GGTTGGAGCACCAAGTGAAG+TGG 0.591898 2_4:-13862091 Msa0316680:CDS
TCTCAGCAATTCATATCCCA+TGG 0.592615 2_4:-13857380 Msa0316680:CDS
TCTAGCTAGTGGATAATACA+AGG 0.595066 2_4:+13863230 None:intergenic
ACAAACTGCATGTCCTCTGA+AGG 0.595663 2_4:+13857445 None:intergenic
TGATCAGCTTGTAGTGAAGG+TGG 0.598391 2_4:-13858583 Msa0316680:intron
TGAATTAATACTCACTCACT+TGG 0.600829 2_4:+13862815 None:intergenic
GTGAGTATTAATTCAATGGA+GGG 0.604163 2_4:-13862807 Msa0316680:exon
GGCAACAATTGCTTGAATGG+TGG 0.608396 2_4:-13858381 Msa0316680:CDS
TCCAAGAGACGGTGATAGTG+AGG 0.612274 2_4:+13862408 None:intergenic
ATGCCTTACAACGTAACGTA+GGG 0.613119 2_4:+13857284 None:intergenic
TGGAGCACCAAGTGAAGTGG+TGG 0.614555 2_4:-13862088 Msa0316680:CDS
AGAAGCAGTAGAGTGCACGC+GGG 0.620809 2_4:+13863270 None:intergenic
ACTAATGCAAACAACATAAG+CGG 0.624162 2_4:-13862633 Msa0316680:CDS
GAAAGCTTCCAAAAGAGGCA+AGG 0.624760 2_4:-13858402 Msa0316680:CDS
TGATGTAGGCTTCCAAGAGA+CGG 0.625494 2_4:+13862397 None:intergenic
GAGAAGCAGTAGAGTGCACG+CGG 0.626137 2_4:+13863269 None:intergenic
ACATTATCCATGTAATAGTG+TGG 0.627160 2_4:+13857403 None:intergenic
ATGGACAACATCAACAACCA+TGG 0.630008 2_4:-13862483 Msa0316680:CDS
ACGGCACTGGAAGCCTTCAG+AGG 0.633606 2_4:-13857458 Msa0316680:CDS
GTGGTGCTTACAGATGGGTA+AGG 0.637343 2_4:+13858340 None:intergenic
ATGGTGTTAGATAGATCCAT+GGG 0.639715 2_4:+13857364 None:intergenic
AGATCCTCAAGCAGAAGACA+GGG 0.640900 2_4:-13858506 Msa0316680:CDS
CCATGCTCTAGTTATTACCT+CGG 0.642109 2_4:-13857345 Msa0316680:exon
ATGAAATAGTAACCTAAACC+AGG 0.642596 2_4:+13862504 None:intergenic
CCGAGGTAATAACTAGAGCA+TGG 0.644204 2_4:+13857345 None:intergenic
AATGCCTTACAACGTAACGT+AGG 0.645137 2_4:+13857283 None:intergenic
CATTAAATGCTGAAAATGTG+TGG 0.653186 2_4:-13863170 Msa0316680:five_prime_UTR
ACAGAAGAAGGGTTAGTGTG+AGG 0.653342 2_4:+13863331 None:intergenic
AGAATGGGTGGAGATGCAGT+TGG 0.655702 2_4:-13862033 Msa0316680:CDS
GCAACTGCAGTGAGAATGGG+TGG 0.659150 2_4:-13862045 Msa0316680:CDS
GGTGGAGCAGACATTACAAG+TGG 0.680780 2_4:-13858363 Msa0316680:CDS
GAAGCAGTAGAGTGCACGCG+GGG 0.707059 2_4:+13863271 None:intergenic
AACACCACAAGCAAGCACCG+AGG 0.759746 2_4:+13857328 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATAAAA+AGG + chr2_4:13861392-13861411 None:intergenic 0.0%
!! ATTCTAATAATTAATAACAA+TGG - chr2_4:13860510-13860529 Msa0316680:intron 10.0%
!! TTTGAATATATGAAAATAAA+AGG + chr2_4:13861769-13861788 None:intergenic 10.0%
!! AAATTTAATTAGAAATATTG+TGG + chr2_4:13862148-13862167 None:intergenic 10.0%
!! TTGTCAATATTAGTAATAAA+TGG + chr2_4:13858207-13858226 None:intergenic 15.0%
!!! TTCATAAATTTTTTACTTCA+TGG - chr2_4:13858304-13858323 Msa0316680:intron 15.0%
!! TAAATAATAACCAATGAATT+AGG - chr2_4:13859305-13859324 Msa0316680:intron 15.0%
!! AAATAATAACCAATGAATTA+GGG - chr2_4:13859306-13859325 Msa0316680:intron 15.0%
!!! AAGTTTTTTTATGTTTTGAA+GGG + chr2_4:13860252-13860271 None:intergenic 15.0%
!! TAAATATAGAAATCTAACAT+TGG + chr2_4:13861453-13861472 None:intergenic 15.0%
!!! AAAGATTCAAATTTTTAAAG+TGG + chr2_4:13862111-13862130 None:intergenic 15.0%
!! TACTATAATTTATGAATAAC+AGG - chr2_4:13862869-13862888 Msa0316680:five_prime_UTR 15.0%
!!! TAATACAAGGTTTTTTATGA+AGG + chr2_4:13857189-13857208 None:intergenic 20.0%
!!! TTTTATGGTAAAAAAGTAAC+AGG + chr2_4:13857450-13857469 None:intergenic 20.0%
!! TATTATTGTTAGTGGAATTA+GGG + chr2_4:13857837-13857856 None:intergenic 20.0%
!! TTATTATTGTTAGTGGAATT+AGG + chr2_4:13857838-13857857 None:intergenic 20.0%
!! TTTATCATCTATGCTTAAAA+GGG + chr2_4:13858259-13858278 None:intergenic 20.0%
!!! TACTTCATGGAAATTATTTT+AGG - chr2_4:13858317-13858336 Msa0316680:intron 20.0%
!!! AAAATCTGAATAGTATTTTC+TGG + chr2_4:13858625-13858644 None:intergenic 20.0%
!! GTAGTACATATATATTTCAT+TGG - chr2_4:13858989-13859008 Msa0316680:intron 20.0%
!!! CTTGATAGTATTGTTTTTAT+GGG - chr2_4:13859085-13859104 Msa0316680:intron 20.0%
!! TTTGTAATGAATCCAAAATT+TGG - chr2_4:13859239-13859258 Msa0316680:intron 20.0%
!! AATAAAATATTCCATCCATA+GGG + chr2_4:13859664-13859683 None:intergenic 20.0%
!! TAATAAAATATTCCATCCAT+AGG + chr2_4:13859665-13859684 None:intergenic 20.0%
!!! TGCTTGTTTTTAACTAAAAA+TGG - chr2_4:13859835-13859854 Msa0316680:intron 20.0%
!!! TTACTACTATATACTTCTTT+TGG + chr2_4:13860092-13860111 None:intergenic 20.0%
!! AAACATTGAATTGAAAACTT+TGG + chr2_4:13860131-13860150 None:intergenic 20.0%
!! TGATATACTACAAAAATAGA+GGG + chr2_4:13860175-13860194 None:intergenic 20.0%
!! ATGATATACTACAAAAATAG+AGG + chr2_4:13860176-13860195 None:intergenic 20.0%
!!! CAAGTTTTTTTATGTTTTGA+AGG + chr2_4:13860253-13860272 None:intergenic 20.0%
!! AAACATGTATAATTGATAAG+TGG + chr2_4:13860281-13860300 None:intergenic 20.0%
!! CTAAGATAATCTTTCTATAT+AGG + chr2_4:13860342-13860361 None:intergenic 20.0%
!! CTATATAGAAAGATTATCTT+AGG - chr2_4:13860340-13860359 Msa0316680:intron 20.0%
!!! GATCGATTTTCTTTATAAAA+TGG + chr2_4:13860409-13860428 None:intergenic 20.0%
!! ATTACTTCAAACATAATCAA+AGG + chr2_4:13860536-13860555 None:intergenic 20.0%
!! TATTATCATAGGGATAAAAA+TGG + chr2_4:13860572-13860591 None:intergenic 20.0%
!! CAAAATACTTAACTTATGAA+GGG + chr2_4:13860663-13860682 None:intergenic 20.0%
!! TACATAAAAGTAAACCAATA+AGG + chr2_4:13861063-13861082 None:intergenic 20.0%
!!! AATTAAAAATAGGAGTACAA+GGG - chr2_4:13861102-13861121 Msa0316680:intron 20.0%
!! TCCTATAATCAAATATATGT+GGG + chr2_4:13861176-13861195 None:intergenic 20.0%
!! AGGTTAAAATATTAACAATG+TGG + chr2_4:13861372-13861391 None:intergenic 20.0%
!!! TGACTATAAATTGTTTTTAC+CGG - chr2_4:13861601-13861620 Msa0316680:intron 20.0%
!! GCAAATAATATAACATTAGA+AGG + chr2_4:13861796-13861815 None:intergenic 20.0%
!! TTTATGAAGAAAAGGAAAAA+AGG - chr2_4:13862005-13862024 Msa0316680:CDS 20.0%
!!! TTTGATTTCTTTCATTTCAT+AGG - chr2_4:13862166-13862185 Msa0316680:intron 20.0%
!! ATTTATTAAAATCCGTAACT+AGG + chr2_4:13862198-13862217 None:intergenic 20.0%
!! TTTGCAAATTTGAAAAATCA+TGG + chr2_4:13862363-13862382 None:intergenic 20.0%
!!! ATTTGAAGACTGATTTTTTA+AGG - chr2_4:13862439-13862458 Msa0316680:CDS 20.0%
!! TCTATATCAAATGTGTAAAT+TGG - chr2_4:13862511-13862530 Msa0316680:CDS 20.0%
!! AATACATGTTTATATGGTTA+GGG + chr2_4:13862753-13862772 None:intergenic 20.0%
!! TTGTACAATACATGTTTATA+TGG + chr2_4:13862759-13862778 None:intergenic 20.0%
!!! GTACAATTTACTTTTTTTGA+AGG - chr2_4:13862773-13862792 Msa0316680:CDS 20.0%
!!! TAAATAGTGATAGTGTTTTG+TGG + chr2_4:13857409-13857428 None:intergenic 25.0%
!!! TACTTTTTTACCATAAAACC+CGG - chr2_4:13857452-13857471 Msa0316680:CDS 25.0%
!!! TTTGTTTTTGTTTCACACAA+GGG + chr2_4:13857486-13857505 None:intergenic 25.0%
!!! TTTTGTTTTTGTTTCACACA+AGG + chr2_4:13857487-13857506 None:intergenic 25.0%
! AGGCAAAAAGGTTAATAAAA+AGG - chr2_4:13857576-13857595 Msa0316680:intron 25.0%
! TTCTTCTTATTCTTATGTGA+TGG - chr2_4:13857660-13857679 Msa0316680:intron 25.0%
! TCTTCTTATTCTTATGTGAT+GGG - chr2_4:13857661-13857680 Msa0316680:intron 25.0%
! TTGTGGTTATTGGAATTTAT+TGG + chr2_4:13857772-13857791 None:intergenic 25.0%
! ATTAGTATTGTTGTGGTTAT+TGG + chr2_4:13857782-13857801 None:intergenic 25.0%
!! GTGATTGTTATTATTGTTAG+TGG + chr2_4:13857845-13857864 None:intergenic 25.0%
!!! CTTTTTTTGTTTGACAAGTT+TGG - chr2_4:13858123-13858142 Msa0316680:intron 25.0%
!!! ATAATTGTACTTTGAAACTG+TGG - chr2_4:13858165-13858184 Msa0316680:intron 25.0%
!!! TAATTGTACTTTGAAACTGT+GGG - chr2_4:13858166-13858185 Msa0316680:intron 25.0%
! CTTTATCATCTATGCTTAAA+AGG + chr2_4:13858260-13858279 None:intergenic 25.0%
!!! TCATGGAAATTATTTTAGGT+TGG - chr2_4:13858321-13858340 Msa0316680:intron 25.0%
!! AAACTGTAAGATTTTTGAAC+TGG + chr2_4:13858554-13858573 None:intergenic 25.0%
! TCTTCTTCTTCAGATAATAT+TGG - chr2_4:13858573-13858592 Msa0316680:CDS 25.0%
!! TATTTGGAACTCACTTATTT+AGG + chr2_4:13858902-13858921 None:intergenic 25.0%
!! GCATTTTTGTCTGAAAATAA+AGG - chr2_4:13858950-13858969 Msa0316680:intron 25.0%
! CATATATATTTCATTGGTGT+TGG - chr2_4:13858995-13859014 Msa0316680:intron 25.0%
! TTGAAGGAACTTAACTATAT+AGG - chr2_4:13859022-13859041 Msa0316680:intron 25.0%
!!! GCTTGATAGTATTGTTTTTA+TGG - chr2_4:13859084-13859103 Msa0316680:intron 25.0%
!! TTAAAATTTCCCTTTTGATG+AGG - chr2_4:13859146-13859165 Msa0316680:intron 25.0%
! TCACAAGTTTCTTTCTAAAT+TGG - chr2_4:13859375-13859394 Msa0316680:intron 25.0%
!! GTGGATTTTAGATTATGATA+TGG - chr2_4:13859464-13859483 Msa0316680:intron 25.0%
!! AAAAATCTTGCAAAGTTGAT+TGG - chr2_4:13859502-13859521 Msa0316680:intron 25.0%
!!! CATAGCTTAATCTCTTTTTT+AGG + chr2_4:13859541-13859560 None:intergenic 25.0%
! TAAACTCACCATTATTCTTA+AGG + chr2_4:13859578-13859597 None:intergenic 25.0%
!! TTTTCTATGATGTTCATTGT+TGG - chr2_4:13859880-13859899 Msa0316680:intron 25.0%
! GATATACTACAAAAATAGAG+GGG + chr2_4:13860174-13860193 None:intergenic 25.0%
! TAAGACAGTACATTACTAAA+AGG + chr2_4:13860229-13860248 None:intergenic 25.0%
!! AGAAAGATTATCTTAGGTTT+TGG - chr2_4:13860346-13860365 Msa0316680:intron 25.0%
! TAACTAAATCCAAGTTTGTA+AGG - chr2_4:13860372-13860391 Msa0316680:intron 25.0%
! AAATGCATAGCTTAACTAAA+TGG + chr2_4:13860453-13860472 None:intergenic 25.0%
!! TTAAGCTATGCATTTTTCTT+CGG - chr2_4:13860458-13860477 Msa0316680:intron 25.0%
! AGTGGAAATCTATTATCATA+GGG + chr2_4:13860582-13860601 None:intergenic 25.0%
! CCAAAATACTTAACTTATGA+AGG + chr2_4:13860664-13860683 None:intergenic 25.0%
!! CCTTCATAAGTTAAGTATTT+TGG - chr2_4:13860661-13860680 Msa0316680:intron 25.0%
!! TTTAACTTTGTCTTCTTTGA+AGG - chr2_4:13860720-13860739 Msa0316680:intron 25.0%
! AAGGGTGAATGTTTAATTAA+AGG + chr2_4:13860911-13860930 None:intergenic 25.0%
!! AAGCTACTAAATTATTGGTT+AGG + chr2_4:13860951-13860970 None:intergenic 25.0%
! AAGCTAAGCTACTAAATTAT+TGG + chr2_4:13860956-13860975 None:intergenic 25.0%
! AATAATTTAGTAGCTTAGCT+TGG - chr2_4:13860955-13860974 Msa0316680:intron 25.0%
!! ACTATGTTTGTTAACCTTAT+TGG - chr2_4:13861046-13861065 Msa0316680:intron 25.0%
! GAAGAGTTCCAATTAAAAAT+AGG - chr2_4:13861092-13861111 Msa0316680:intron 25.0%
!!! CTTGTACTCCTATTTTTAAT+TGG + chr2_4:13861103-13861122 None:intergenic 25.0%
!! CAATTAAAAATAGGAGTACA+AGG - chr2_4:13861101-13861120 Msa0316680:intron 25.0%
!! ATTAAAAATAGGAGTACAAG+GGG - chr2_4:13861103-13861122 Msa0316680:intron 25.0%
! TATAATCAAATATATGTGGG+GGG + chr2_4:13861173-13861192 None:intergenic 25.0%
! CTATAATCAAATATATGTGG+GGG + chr2_4:13861174-13861193 None:intergenic 25.0%
! CCTATAATCAAATATATGTG+GGG + chr2_4:13861175-13861194 None:intergenic 25.0%
! GTCCTATAATCAAATATATG+TGG + chr2_4:13861177-13861196 None:intergenic 25.0%
! ATATTTGATTATAGGACCTA+AGG - chr2_4:13861180-13861199 Msa0316680:intron 25.0%
!! TAATTTTGCATTCAGTTACT+TGG + chr2_4:13861268-13861287 None:intergenic 25.0%
! ATGGATATTTGTATATATGG+GGG + chr2_4:13861317-13861336 None:intergenic 25.0%
! CATGGATATTTGTATATATG+GGG + chr2_4:13861318-13861337 None:intergenic 25.0%
! CCATGGATATTTGTATATAT+GGG + chr2_4:13861319-13861338 None:intergenic 25.0%
! ACCATGGATATTTGTATATA+TGG + chr2_4:13861320-13861339 None:intergenic 25.0%
!! ATCAAAATGGTTAGGATTTT+TGG + chr2_4:13861343-13861362 None:intergenic 25.0%
!!! ATTTTAATGTTCTGTTTACG+AGG - chr2_4:13861472-13861491 Msa0316680:intron 25.0%
! ATTACTTACACATGAATAGA+AGG + chr2_4:13861516-13861535 None:intergenic 25.0%
! AAATGTCATAACATAGAACT+TGG - chr2_4:13861671-13861690 Msa0316680:intron 25.0%
! TCAAATACTAAATGCATGTT+CGG + chr2_4:13862425-13862444 None:intergenic 25.0%
!! AGTTGTTTGCATTAATTTGA+AGG - chr2_4:13862472-13862491 Msa0316680:CDS 25.0%
! TCAAATGTGTAAATTGGATT+TGG - chr2_4:13862517-13862536 Msa0316680:CDS 25.0%
! CAAATGTGTAAATTGGATTT+GGG - chr2_4:13862518-13862537 Msa0316680:CDS 25.0%
!! TCAAAATCTGCATTGATATT+TGG - chr2_4:13862645-13862664 Msa0316680:CDS 25.0%
! CAATACATGTTTATATGGTT+AGG + chr2_4:13862754-13862773 None:intergenic 25.0%
! TTTGAATCATTAAAATAGCG+AGG - chr2_4:13863264-13863283 Msa0316680:five_prime_UTR 25.0%
CATTAAATGCTGAAAATGTG+TGG - chr2_4:13857259-13857278 Msa0316680:three_prime_UTR 30.0%
! GATTAACACTCATTTTCCAA+AGG - chr2_4:13857289-13857308 Msa0316680:three_prime_UTR 30.0%
!!! ACTTTTTTACCATAAAACCC+GGG - chr2_4:13857453-13857472 Msa0316680:CDS 30.0%
AAAGAAAAATCTGACCTAGA+AGG - chr2_4:13857556-13857575 Msa0316680:intron 30.0%
! TATTAACCTTTTTGCCTTCT+AGG + chr2_4:13857573-13857592 None:intergenic 30.0%
!! TAAAAAGGAAGTGTTACTTG+TGG - chr2_4:13857591-13857610 Msa0316680:intron 30.0%
TGAATTAATACTCACTCACT+TGG + chr2_4:13857617-13857636 None:intergenic 30.0%
GTGAGTGAGTATTAATTCAA+TGG - chr2_4:13857618-13857637 Msa0316680:intron 30.0%
AGTGAGTATTAATTCAATGG+AGG - chr2_4:13857621-13857640 Msa0316680:intron 30.0%
GTGAGTATTAATTCAATGGA+GGG - chr2_4:13857622-13857641 Msa0316680:intron 30.0%
TGTTTGCATTAGTATTGTTG+TGG + chr2_4:13857789-13857808 None:intergenic 30.0%
ACTAATGCAAACAACATAAG+CGG - chr2_4:13857796-13857815 Msa0316680:intron 30.0%
!!! ATTTTGAAGCATGATAGAAG+AGG + chr2_4:13857890-13857909 None:intergenic 30.0%
ATGAAATAGTAACCTAAACC+AGG + chr2_4:13857928-13857947 None:intergenic 30.0%
! TGGTTTAGGTTACTATTTCA+TGG - chr2_4:13857927-13857946 Msa0316680:intron 30.0%
! AAAAGCATAGCTTCCTTTAA+GGG + chr2_4:13858513-13858532 None:intergenic 30.0%
! AAAAAGCATAGCTTCCTTTA+AGG + chr2_4:13858514-13858533 None:intergenic 30.0%
!!! AAGCTATGCTTTTTCTTCAA+AGG - chr2_4:13858520-13858539 Msa0316680:CDS 30.0%
TTCCAAATACTTGAAACCAA+AGG - chr2_4:13858913-13858932 Msa0316680:intron 30.0%
GACAAAAATGCATGAGTTAA+GGG + chr2_4:13858941-13858960 None:intergenic 30.0%
AGACAAAAATGCATGAGTTA+AGG + chr2_4:13858942-13858961 None:intergenic 30.0%
TGTCTGAAAATAAAGGTAGA+TGG - chr2_4:13858957-13858976 Msa0316680:intron 30.0%
GTAATGAATCCAAAATTTGG+AGG - chr2_4:13859242-13859261 Msa0316680:intron 30.0%
TTAAGCTATGATGTGTTAGT+AGG - chr2_4:13859551-13859570 Msa0316680:intron 30.0%
TAGTAGGTCCTTAAGAATAA+TGG - chr2_4:13859567-13859586 Msa0316680:intron 30.0%
! TTTTCTCATTTGTCTCATCA+AGG - chr2_4:13859620-13859639 Msa0316680:intron 30.0%
!! ATGTATATTTTTGTGTCTGC+AGG - chr2_4:13859734-13859753 Msa0316680:intron 30.0%
CATCATAGAAAAATGCATGT+AGG + chr2_4:13859872-13859891 None:intergenic 30.0%
AACCTTATCACATAATGCAT+TGG - chr2_4:13860006-13860025 Msa0316680:intron 30.0%
ATCCAATGCATTATGTGATA+AGG + chr2_4:13860011-13860030 None:intergenic 30.0%
GAAAACTTTGGATCAATATG+TGG + chr2_4:13860119-13860138 None:intergenic 30.0%
! ATCCAAGTTTGTAAGGTTTT+CGG - chr2_4:13860379-13860398 Msa0316680:intron 30.0%
CAGTGGAAATCTATTATCAT+AGG + chr2_4:13860583-13860602 None:intergenic 30.0%
CTATGATAATAGATTTCCAC+TGG - chr2_4:13860581-13860600 Msa0316680:intron 30.0%
! TTTGTCTTCTTTGAAGGAAA+AGG - chr2_4:13860726-13860745 Msa0316680:intron 30.0%
TGAAGGTTAACATTTGAACT+AGG + chr2_4:13860842-13860861 None:intergenic 30.0%
TCAAATGTTAACCTTCAATG+TGG - chr2_4:13860845-13860864 Msa0316680:intron 30.0%
TAATTAAACATTCACCCTTG+TGG - chr2_4:13860912-13860931 Msa0316680:intron 30.0%
!! GACAAATTTTGATACCACAA+GGG + chr2_4:13860929-13860948 None:intergenic 30.0%
AGCTAGTTGAAATAGTATCA+TGG - chr2_4:13861007-13861026 Msa0316680:intron 30.0%
CCCCACATATATTTGATTAT+AGG - chr2_4:13861172-13861191 Msa0316680:intron 30.0%
CCCATATATACAAATATCCA+TGG - chr2_4:13861316-13861335 Msa0316680:intron 30.0%
AATGTGGAGTGAAATCAAAA+TGG + chr2_4:13861356-13861375 None:intergenic 30.0%
TCAACAACAATAATTGCTAC+CGG + chr2_4:13861623-13861642 None:intergenic 30.0%
! GGAATCAACTTTTTGCAAAT+CGG - chr2_4:13861692-13861711 Msa0316680:intron 30.0%
AGAAAATACAGTGGATACTT+AGG - chr2_4:13861966-13861985 Msa0316680:CDS 30.0%
AGCAAGAGTTTATGAAGAAA+AGG - chr2_4:13861997-13862016 Msa0316680:CDS 30.0%
!! AGTGATTTGCTAAAATTGTG+TGG - chr2_4:13862272-13862291 Msa0316680:intron 30.0%
TTGGAGCTACAAAAAAATCA+CGG + chr2_4:13862301-13862320 None:intergenic 30.0%
TTATTGCAAAAGCTACACAT+TGG + chr2_4:13862320-13862339 None:intergenic 30.0%
GCAAATTTGAAAAATCATGG+TGG + chr2_4:13862360-13862379 None:intergenic 30.0%
! TGTTTATATGGTTAGGGTTT+TGG + chr2_4:13862747-13862766 None:intergenic 30.0%
ATCAGAAGCAAATAAACAAC+TGG - chr2_4:13862931-13862950 Msa0316680:five_prime_UTR 30.0%
! ACAACTGGTTTATCAATCAA+AGG - chr2_4:13862946-13862965 Msa0316680:five_prime_UTR 30.0%
GGTTTATCAATCAAAGGAAA+CGG - chr2_4:13862952-13862971 Msa0316680:five_prime_UTR 30.0%
ACATTATCCATGTAATAGTG+TGG + chr2_4:13863029-13863048 None:intergenic 30.0%
TATTAGACGGTTCTTTATGA+AGG - chr2_4:13863302-13863321 Msa0316680:five_prime_UTR 30.0%
AAGGTTGAGTTACAGAAGAA+GGG + chr2_4:13857112-13857131 None:intergenic 35.0%
! TCTAGCTAGTGGATAATACA+AGG + chr2_4:13857202-13857221 None:intergenic 35.0%
!!! TTTTTGGCTTCTTCTACTAC+TGG + chr2_4:13857334-13857353 None:intergenic 35.0%
!!! GAAGTAGTGAAGAGGTTTTT+TGG + chr2_4:13857350-13857369 None:intergenic 35.0%
TACATGAAGAAGTAGTGAAG+AGG + chr2_4:13857358-13857377 None:intergenic 35.0%
TACTTCTTCATGTAACTGAC+TGG - chr2_4:13857364-13857383 Msa0316680:CDS 35.0%
!! ATAGTGATAGTGTTTTGTGG+TGG + chr2_4:13857406-13857425 None:intergenic 35.0%
!! ACTAAAGGCATCATCATCAT+TGG + chr2_4:13857721-13857740 None:intergenic 35.0%
TGATGAGATGAAGTGACTAA+AGG + chr2_4:13857736-13857755 None:intergenic 35.0%
TTGTTAGTGGAATTAGGGAT+GGG + chr2_4:13857832-13857851 None:intergenic 35.0%
ATTGTTAGTGGAATTAGGGA+TGG + chr2_4:13857833-13857852 None:intergenic 35.0%
!! AGAGGTGTTGTTATTACAGT+TGG + chr2_4:13857872-13857891 None:intergenic 35.0%
AATAACCATCAAAACACTCC+TGG - chr2_4:13857907-13857926 Msa0316680:intron 35.0%
TTCTGTCAAATCCAAGATCA+TGG - chr2_4:13857993-13858012 Msa0316680:intron 35.0%
AGAACTTTCCAAACCCTTAA+AGG - chr2_4:13858497-13858516 Msa0316680:CDS 35.0%
! CACCTTTGGTTTCAAGTATT+TGG + chr2_4:13858918-13858937 None:intergenic 35.0%
TTTCTGTGACCTCATCAAAA+GGG + chr2_4:13859158-13859177 None:intergenic 35.0%
ATCCAAAATTTGGAGGACTT+CGG - chr2_4:13859249-13859268 Msa0316680:intron 35.0%
CAGAAGAAACCCTAATTCAT+TGG + chr2_4:13859318-13859337 None:intergenic 35.0%
!! AGGAAAGTACTTTACCTCTT+TGG + chr2_4:13859429-13859448 None:intergenic 35.0%
! AAAGAGGTAAAGTACTTTCC+TGG - chr2_4:13859428-13859447 Msa0316680:intron 35.0%
! AAGAGGTAAAGTACTTTCCT+GGG - chr2_4:13859429-13859448 Msa0316680:intron 35.0%
TGGTGCTTATCAAAAAACTG+TGG - chr2_4:13859900-13859919 Msa0316680:intron 35.0%
! AAACATGACCAAGCTTTTAG+TGG - chr2_4:13860033-13860052 Msa0316680:intron 35.0%
TCAATGATCCACTAAAAGCT+TGG + chr2_4:13860044-13860063 None:intergenic 35.0%
!! TTCTAGCTTCCAACTATGTA+TGG - chr2_4:13860065-13860084 Msa0316680:intron 35.0%
! TCTAGCTTCCAACTATGTAT+GGG - chr2_4:13860066-13860085 Msa0316680:intron 35.0%
TGTAGTATATCATCGTATGC+TGG - chr2_4:13860183-13860202 Msa0316680:intron 35.0%
! TCCAAGTTTGTAAGGTTTTC+GGG - chr2_4:13860380-13860399 Msa0316680:intron 35.0%
! TATGCATTTTTCTTCGGCTT+TGG - chr2_4:13860464-13860483 Msa0316680:intron 35.0%
!!! TGGTTTTGATTTCTGCATCT+AGG - chr2_4:13860601-13860620 Msa0316680:intron 35.0%
!! AAAGGAGTGTCCATTATTTC+AGG - chr2_4:13860744-13860763 Msa0316680:intron 35.0%
!! AAGGAGTGTCCATTATTTCA+GGG - chr2_4:13860745-13860764 Msa0316680:intron 35.0%
GCATCTAAACCCTGAAATAA+TGG + chr2_4:13860757-13860776 None:intergenic 35.0%
TATTTCAGGGTTTAGATGCA+TGG - chr2_4:13860758-13860777 Msa0316680:intron 35.0%
CTACACATCCATTATTTCCA+AGG + chr2_4:13860786-13860805 None:intergenic 35.0%
AACATTTGAACTAGGTGCAT+AGG + chr2_4:13860834-13860853 None:intergenic 35.0%
!! TCATTGATTCACCACATTGA+AGG + chr2_4:13860859-13860878 None:intergenic 35.0%
!! GGACAAATTTTGATACCACA+AGG + chr2_4:13860930-13860949 None:intergenic 35.0%
GCTGAAACTAGCATATATGT+TGG + chr2_4:13860990-13861009 None:intergenic 35.0%
TACTCATCCATATACAACCA+AGG - chr2_4:13861126-13861145 Msa0316680:intron 35.0%
ACTCATCCATATACAACCAA+GGG - chr2_4:13861127-13861146 Msa0316680:intron 35.0%
GTCATATGAATTGCATCCTT+AGG + chr2_4:13861199-13861218 None:intergenic 35.0%
! CTTTTCTTTGAGTGGTGTTT+AGG + chr2_4:13861221-13861240 None:intergenic 35.0%
CTAAACACCACTCAAAGAAA+AGG - chr2_4:13861219-13861238 Msa0316680:intron 35.0%
!! GTTACTTGGAAGGTATTTCA+TGG + chr2_4:13861254-13861273 None:intergenic 35.0%
TTTGCATTCAGTTACTTGGA+AGG + chr2_4:13861264-13861283 None:intergenic 35.0%
GGAGTGAAATCAAAATGGTT+AGG + chr2_4:13861351-13861370 None:intergenic 35.0%
AATGTTCTGTTTACGAGGAT+TGG - chr2_4:13861477-13861496 Msa0316680:intron 35.0%
ATATGATCAGCTTGTAGTGA+AGG - chr2_4:13861843-13861862 Msa0316680:intron 35.0%
!! CAGCTTTTGAGAAAATACAG+TGG - chr2_4:13861957-13861976 Msa0316680:CDS 35.0%
AAAAGGAAAGCTTCCAAAAG+AGG - chr2_4:13862022-13862041 Msa0316680:CDS 35.0%
TTAAAGTGGTGCTTACAGAT+GGG + chr2_4:13862097-13862116 None:intergenic 35.0%
! TTTAAAGTGGTGCTTACAGA+TGG + chr2_4:13862098-13862117 None:intergenic 35.0%
!! TTGAAAAATCATGGTGGACT+TGG + chr2_4:13862354-13862373 None:intergenic 35.0%
!! GATTTTGATCCAATGACCTT+TGG + chr2_4:13862581-13862600 None:intergenic 35.0%
TTGGATCAAAATCAGACGAT+TGG - chr2_4:13862588-13862607 Msa0316680:CDS 35.0%
TTGATCACATTATTGACCGT+TGG + chr2_4:13862687-13862706 None:intergenic 35.0%
ATGTAATAGTGTGGATGACT+TGG + chr2_4:13863020-13863039 None:intergenic 35.0%
AAGTCATCCACACTATTACA+TGG - chr2_4:13863019-13863038 Msa0316680:five_prime_UTR 35.0%
! ATGGTGTTAGATAGATCCAT+GGG + chr2_4:13863068-13863087 None:intergenic 35.0%
! ATAAGCTGCTGGTTATTAGA+CGG - chr2_4:13863289-13863308 Msa0316680:five_prime_UTR 35.0%
GAAGGTTGAGTTACAGAAGA+AGG + chr2_4:13857113-13857132 None:intergenic 40.0%
TTTCCAAAGGAAATCTGTGC+AGG - chr2_4:13857302-13857321 Msa0316680:three_prime_UTR 40.0%
! TTTTTACCATAAAACCCGGG+CGG - chr2_4:13857456-13857475 Msa0316680:CDS 40.0%
ATCTGACCTAGAAGGCAAAA+AGG - chr2_4:13857564-13857583 Msa0316680:intron 40.0%
!! TCAATGGAGGGTAGTTCTAA+TGG - chr2_4:13857634-13857653 Msa0316680:intron 40.0%
!!! TCTTATGTGATGGGTGCTTT+TGG - chr2_4:13857670-13857689 Msa0316680:intron 40.0%
!! CTTTTGGAGAAAACAGTGGT+GGG - chr2_4:13857686-13857705 Msa0316680:intron 40.0%
!! AAAGGCATCATCATCATTGG+AGG + chr2_4:13857718-13857737 None:intergenic 40.0%
!!! CTAAACCAGGAGTGTTTTGA+TGG + chr2_4:13857915-13857934 None:intergenic 40.0%
CATCAAAACACTCCTGGTTT+AGG - chr2_4:13857913-13857932 Msa0316680:intron 40.0%
ATGGACAACATCAACAACCA+TGG - chr2_4:13857946-13857965 Msa0316680:intron 40.0%
AAGAAGAAGAAGAGCTTCCA+TGG + chr2_4:13857966-13857985 None:intergenic 40.0%
AGCCTACATCAACTGTCAAA+AGG - chr2_4:13858044-13858063 Msa0316680:intron 40.0%
!! GACCTTTTGACAGTTGATGT+AGG + chr2_4:13858049-13858068 None:intergenic 40.0%
! CATAGCTTCCTTTAAGGGTT+TGG + chr2_4:13858508-13858527 None:intergenic 40.0%
TATCCATGCATGTCTGTGTT+TGG - chr2_4:13858691-13858710 Msa0316680:intron 40.0%
GTTTCTGTGACCTCATCAAA+AGG + chr2_4:13859159-13859178 None:intergenic 40.0%
CAGAAACTCTCAGATTTCAC+TGG - chr2_4:13859172-13859191 Msa0316680:intron 40.0%
! TTCCGAAGTCCTCCAAATTT+TGG + chr2_4:13859254-13859273 None:intergenic 40.0%
! GAAGATTGGTGGGTGAATTT+AGG - chr2_4:13859277-13859296 Msa0316680:intron 40.0%
ATAGTAGAGTAGCTCCAAAG+AGG - chr2_4:13859412-13859431 Msa0316680:intron 40.0%
! AGAGGTAAAGTACTTTCCTG+GGG - chr2_4:13859430-13859449 Msa0316680:intron 40.0%
CATAGGGAGTAGTGTTTACA+CGG + chr2_4:13859648-13859667 None:intergenic 40.0%
TAAACACTACTCCCTATGGA+TGG - chr2_4:13859650-13859669 Msa0316680:intron 40.0%
! TCTTTTGGCCCATACATAGT+TGG + chr2_4:13860077-13860096 None:intergenic 40.0%
ACCCGAAAACCTTACAAACT+TGG + chr2_4:13860384-13860403 None:intergenic 40.0%
GATGCAGAAATCAAAACCAG+TGG + chr2_4:13860600-13860619 None:intergenic 40.0%
TGGTGAAGTATACATTCACG+AGG - chr2_4:13860681-13860700 Msa0316680:intron 40.0%
CAAGGGCAAGCTAATTACAA+GGG - chr2_4:13861144-13861163 Msa0316680:intron 40.0%
AAGGGCAAGCTAATTACAAG+GGG - chr2_4:13861145-13861164 Msa0316680:intron 40.0%
! GCAATAGCCTTTTCTTTGAG+TGG + chr2_4:13861229-13861248 None:intergenic 40.0%
!! ACTTGGAAGGTATTTCATGG+AGG + chr2_4:13861251-13861270 None:intergenic 40.0%
!! TGGTTAGGATTTTTGGACCA+TGG + chr2_4:13861336-13861355 None:intergenic 40.0%
CACATGAATAGAAGGCAAGT+TGG + chr2_4:13861508-13861527 None:intergenic 40.0%
TGCAAATCGGATTGAAGAGT+AGG - chr2_4:13861705-13861724 Msa0316680:intron 40.0%
AGCAGAAGACAGGGAATTAA+AGG - chr2_4:13861932-13861951 Msa0316680:CDS 40.0%
GCAGAAGACAGGGAATTAAA+GGG - chr2_4:13861933-13861952 Msa0316680:CDS 40.0%
! AATTGTTGCCTTGCCTCTTT+TGG + chr2_4:13862038-13862057 None:intergenic 40.0%
CAAGGCAACAATTGCTTGAA+TGG - chr2_4:13862045-13862064 Msa0316680:CDS 40.0%
CATAGGCAATCACCTAGTTA+CGG - chr2_4:13862183-13862202 Msa0316680:intron 40.0%
TGACAACTCATGTTTCGACT+TGG - chr2_4:13862231-13862250 Msa0316680:intron 40.0%
TAGCGTGACTTGAAAAACCA+TGG + chr2_4:13862400-13862419 None:intergenic 40.0%
ACCTTTCGATCTTGATCCAA+CGG - chr2_4:13862668-13862687 Msa0316680:CDS 40.0%
ATAACAGGAATCACAGAAGC+TGG - chr2_4:13862884-13862903 Msa0316680:five_prime_UTR 40.0%
TCTCAGCAATTCATATCCCA+TGG - chr2_4:13863049-13863068 Msa0316680:five_prime_UTR 40.0%
! CATGGTGTTAGATAGATCCA+TGG + chr2_4:13863069-13863088 None:intergenic 40.0%
CCATGCTCTAGTTATTACCT+CGG - chr2_4:13863084-13863103 Msa0316680:five_prime_UTR 40.0%
! GCTTGTGGTGTTAAAAGTCT+TGG - chr2_4:13863112-13863131 Msa0316680:five_prime_UTR 40.0%
TAACCCTACGTTACGTTGTA+AGG - chr2_4:13863142-13863161 Msa0316680:five_prime_UTR 40.0%
ATGCCTTACAACGTAACGTA+GGG + chr2_4:13863148-13863167 None:intergenic 40.0%
AATGCCTTACAACGTAACGT+AGG + chr2_4:13863149-13863168 None:intergenic 40.0%
! ACAGAAGAAGGGTTAGTGTG+AGG + chr2_4:13857101-13857120 None:intergenic 45.0%
AGAGAGAGAGAGAGAGATGA+AGG + chr2_4:13857131-13857150 None:intergenic 45.0%
CTCTTTGTCTCTCTAGCTAG+TGG + chr2_4:13857213-13857232 None:intergenic 45.0%
AAGCCTGCACAGATTTCCTT+TGG + chr2_4:13857308-13857327 None:intergenic 45.0%
! TTTTACCATAAAACCCGGGC+GGG - chr2_4:13857457-13857476 Msa0316680:CDS 45.0%
!! GGTGCTTTTGGAGAAAACAG+TGG - chr2_4:13857682-13857701 Msa0316680:intron 45.0%
!! GCTTTTGGAGAAAACAGTGG+TGG - chr2_4:13857685-13857704 Msa0316680:intron 45.0%
TAGTGGAATTAGGGATGGGA+AGG + chr2_4:13857828-13857847 None:intergenic 45.0%
TGATGTAGGCTTCCAAGAGA+CGG + chr2_4:13858035-13858054 None:intergenic 45.0%
ATGTGCAACTGCAGTGAGAA+TGG - chr2_4:13858380-13858399 Msa0316680:CDS 45.0%
TGTGCAACTGCAGTGAGAAT+GGG - chr2_4:13858381-13858400 Msa0316680:CDS 45.0%
! GCAGTTGGATCAGGTTGTTT+AGG - chr2_4:13858411-13858430 Msa0316680:CDS 45.0%
!! TCCAGCTCTAGATCAGTTCA+TGG - chr2_4:13858440-13858459 Msa0316680:CDS 45.0%
! TCCATGAACTGATCTAGAGC+TGG + chr2_4:13858444-13858463 None:intergenic 45.0%
CTTCCAAACACAGACATGCA+TGG + chr2_4:13858697-13858716 None:intergenic 45.0%
!! CATTGGTGTTGGTGCATTGA+AGG - chr2_4:13859006-13859025 Msa0316680:intron 45.0%
AATTTGGAGGACTTCGGAAC+AGG - chr2_4:13859255-13859274 Msa0316680:intron 45.0%
TTCGGAACAGGAAGATTGGT+GGG - chr2_4:13859267-13859286 Msa0316680:intron 45.0%
ACCTCGCAATTACCACTTCT+GGG + chr2_4:13859349-13859368 None:intergenic 45.0%
TACCTCGCAATTACCACTTC+TGG + chr2_4:13859350-13859369 None:intergenic 45.0%
CGTGTAAACACTACTCCCTA+TGG - chr2_4:13859646-13859665 Msa0316680:intron 45.0%
TTCTGCATCTAGGCTTGACT+AGG - chr2_4:13860611-13860630 Msa0316680:intron 45.0%
TCTGCATCTAGGCTTGACTA+GGG - chr2_4:13860612-13860631 Msa0316680:intron 45.0%
ACTAGGGTCTCTTGTGTGTA+TGG - chr2_4:13860628-13860647 Msa0316680:intron 45.0%
GCATGGAGCCTTGGAAATAA+TGG - chr2_4:13860775-13860794 Msa0316680:intron 45.0%
GTGTAGATTATGTGCCTTCC+CGG - chr2_4:13860800-13860819 Msa0316680:intron 45.0%
AGGTGCATAGGATAAAGAGC+CGG + chr2_4:13860822-13860841 None:intergenic 45.0%
AGCTTGCCCTTGGTTGTATA+TGG + chr2_4:13861136-13861155 None:intergenic 45.0%
!! CCTTGTAATTAGCTTGCCCT+TGG + chr2_4:13861146-13861165 None:intergenic 45.0%
CCAAGGGCAAGCTAATTACA+AGG - chr2_4:13861143-13861162 Msa0316680:intron 45.0%
! TTTGTATATATGGGGGCGCA+AGG + chr2_4:13861310-13861329 None:intergenic 45.0%
TCGGATTGAAGAGTAGGTCT+TGG - chr2_4:13861711-13861730 Msa0316680:intron 45.0%
CGGATTGAAGAGTAGGTCTT+GGG - chr2_4:13861712-13861731 Msa0316680:intron 45.0%
TGATCAGCTTGTAGTGAAGG+TGG - chr2_4:13861846-13861865 Msa0316680:intron 45.0%
CTTGTAGTGAAGGTGGAGAT+AGG - chr2_4:13861853-13861872 Msa0316680:intron 45.0%
AGTGAAGGTGGAGATAGGAA+TGG - chr2_4:13861858-13861877 Msa0316680:CDS 45.0%
TAGATCCTCAAGCAGAAGAC+AGG - chr2_4:13861922-13861941 Msa0316680:CDS 45.0%
AGATCCTCAAGCAGAAGACA+GGG - chr2_4:13861923-13861942 Msa0316680:CDS 45.0%
AATTCCCTGTCTTCTGCTTG+AGG + chr2_4:13861930-13861949 None:intergenic 45.0%
GAAAGCTTCCAAAAGAGGCA+AGG - chr2_4:13862027-13862046 Msa0316680:CDS 45.0%
GGCAACAATTGCTTGAATGG+TGG - chr2_4:13862048-13862067 Msa0316680:CDS 45.0%
!! GTTTCGACTTGGTGCATGTT+TGG - chr2_4:13862242-13862261 Msa0316680:intron 45.0%
AAAGTCACGTTGAACCACCA+TGG - chr2_4:13862380-13862399 Msa0316680:intron 45.0%
CGTGACTTGAAAAACCATGG+TGG + chr2_4:13862397-13862416 None:intergenic 45.0%
TGATCCAATGACCTTTGGTG+TGG + chr2_4:13862576-13862595 None:intergenic 45.0%
ACCGTTGGATCAAGATCGAA+AGG + chr2_4:13862672-13862691 None:intergenic 45.0%
TCAATCAAAGGAAACGGCAC+TGG - chr2_4:13862958-13862977 Msa0316680:five_prime_UTR 45.0%
ACAAACTGCATGTCCTCTGA+AGG + chr2_4:13862987-13863006 None:intergenic 45.0%
TTCAGAGGACATGCAGTTTG+TGG - chr2_4:13862986-13863005 Msa0316680:five_prime_UTR 45.0%
CCGAGGTAATAACTAGAGCA+TGG + chr2_4:13863087-13863106 None:intergenic 45.0%
ATAGCGAGGAAATAAGCTGC+TGG - chr2_4:13863278-13863297 Msa0316680:five_prime_UTR 45.0%
! GAAGGGTTAGTGTGAGGCAT+TGG + chr2_4:13857095-13857114 None:intergenic 50.0%
GTGAGGATGAGCCATGATCT+TGG + chr2_4:13858007-13858026 None:intergenic 50.0%
TCCTCACTATCACCGTCTCT+TGG - chr2_4:13858020-13858039 Msa0316680:intron 50.0%
! TCCAAGAGACGGTGATAGTG+AGG + chr2_4:13858024-13858043 None:intergenic 50.0%
AACCTTGCCACCACTTCACT+TGG + chr2_4:13858351-13858370 None:intergenic 50.0%
AGAATGGGTGGAGATGCAGT+TGG - chr2_4:13858396-13858415 Msa0316680:CDS 50.0%
!! GCATGAGTTAAGGGCACCTT+TGG + chr2_4:13858932-13858951 None:intergenic 50.0%
GGACTTCGGAACAGGAAGAT+TGG - chr2_4:13859263-13859282 Msa0316680:intron 50.0%
CTTCGGAACAGGAAGATTGG+TGG - chr2_4:13859266-13859285 Msa0316680:intron 50.0%
TCTGCACTTGTTCCCAGAAG+TGG - chr2_4:13859334-13859353 Msa0316680:intron 50.0%
TCCCAGAAGTGGTAATTGCG+AGG - chr2_4:13859345-13859364 Msa0316680:intron 50.0%
GGTTTAGATGCATGGAGCCT+TGG - chr2_4:13860766-13860785 Msa0316680:intron 50.0%
CATAGGATAAAGAGCCGGGA+AGG + chr2_4:13860817-13860836 None:intergenic 50.0%
GGTGCATAGGATAAAGAGCC+GGG + chr2_4:13860821-13860840 None:intergenic 50.0%
GGTGGAGCAGACATTACAAG+TGG - chr2_4:13862066-13862085 Msa0316680:CDS 50.0%
GTGGTGCTTACAGATGGGTA+AGG + chr2_4:13862092-13862111 None:intergenic 50.0%
! TTTGGTGTGGTGTGACTGCA+CGG + chr2_4:13862563-13862582 None:intergenic 50.0%
CACACCACACCAAAGGTCAT+TGG - chr2_4:13862569-13862588 Msa0316680:CDS 50.0%
GGACATGCAGTTTGTGGTGA+TGG - chr2_4:13862992-13863011 Msa0316680:five_prime_UTR 50.0%
!! ATTACCTCGGTGCTTGCTTG+TGG - chr2_4:13863097-13863116 Msa0316680:five_prime_UTR 50.0%
AGAAGCAGTAGAGTGCACGC+GGG + chr2_4:13857162-13857181 None:intergenic 55.0%
GAGAAGCAGTAGAGTGCACG+CGG + chr2_4:13857163-13857182 None:intergenic 55.0%
! GGTTGGAGCACCAAGTGAAG+TGG - chr2_4:13858338-13858357 Msa0316680:intron 55.0%
! TGGAGCACCAAGTGAAGTGG+TGG - chr2_4:13858341-13858360 Msa0316680:intron 55.0%
CACCAAGTGAAGTGGTGGCA+AGG - chr2_4:13858346-13858365 Msa0316680:intron 55.0%
GCAACTGCAGTGAGAATGGG+TGG - chr2_4:13858384-13858403 Msa0316680:CDS 55.0%
GGTGGAGATGCAGTTGGATC+AGG - chr2_4:13858402-13858421 Msa0316680:CDS 55.0%
TCCTGGGGACAAGTGCATAG+TGG - chr2_4:13859445-13859464 Msa0316680:intron 55.0%
TCCACTATGCACTTGTCCCC+AGG + chr2_4:13859449-13859468 None:intergenic 55.0%
GTGCAGTCACACCACACCAA+AGG - chr2_4:13862562-13862581 Msa0316680:CDS 55.0%
!! CTGGCTCTAGCAGAGTCAAC+AGG - chr2_4:13862903-13862922 Msa0316680:five_prime_UTR 55.0%
! AACACCACAAGCAAGCACCG+AGG + chr2_4:13863104-13863123 None:intergenic 55.0%
GAAGCAGTAGAGTGCACGCG+GGG + chr2_4:13857161-13857180 None:intergenic 60.0%
! GGGGGCGCAAGGAAAAGAGA+GGG + chr2_4:13861299-13861318 None:intergenic 60.0%
! TGGGGGCGCAAGGAAAAGAG+AGG + chr2_4:13861300-13861319 None:intergenic 60.0%
! ACGGCACTGGAAGCCTTCAG+AGG - chr2_4:13862971-13862990 Msa0316680:five_prime_UTR 60.0%
! GGTCACCCGCCCGGGTTTTA+TGG + chr2_4:13857465-13857484 None:intergenic 65.0%
TCACACAAGGGTCACCCGCC+CGG + chr2_4:13857474-13857493 None:intergenic 65.0%
CACACAAGGGTCACCCGCCC+GGG + chr2_4:13857473-13857492 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 13857090 13863361 13857090 ID=Msa0316680;Name=Msa0316680
chr2_4 mRNA 13857090 13863361 13857090 ID=Msa0316680-mRNA-1;Parent=Msa0316680;Name=Msa0316680-mRNA-1;_AED=0.12;_eAED=0.12;_QI=547|1|1|1|1|1|4|267|378
chr2_4 exon 13857090 13857560 13857090 ID=Msa0316680-mRNA-1:exon:5275;Parent=Msa0316680-mRNA-1
chr2_4 exon 13858351 13858598 13858351 ID=Msa0316680-mRNA-1:exon:5274;Parent=Msa0316680-mRNA-1
chr2_4 exon 13861857 13862112 13861857 ID=Msa0316680-mRNA-1:exon:5273;Parent=Msa0316680-mRNA-1
chr2_4 exon 13862386 13863361 13862386 ID=Msa0316680-mRNA-1:exon:5272;Parent=Msa0316680-mRNA-1
chr2_4 five_prime_UTR 13862815 13863361 13862815 ID=Msa0316680-mRNA-1:five_prime_utr;Parent=Msa0316680-mRNA-1
chr2_4 CDS 13862386 13862814 13862386 ID=Msa0316680-mRNA-1:cds;Parent=Msa0316680-mRNA-1
chr2_4 CDS 13861857 13862112 13861857 ID=Msa0316680-mRNA-1:cds;Parent=Msa0316680-mRNA-1
chr2_4 CDS 13858351 13858598 13858351 ID=Msa0316680-mRNA-1:cds;Parent=Msa0316680-mRNA-1
chr2_4 CDS 13857357 13857560 13857357 ID=Msa0316680-mRNA-1:cds;Parent=Msa0316680-mRNA-1
chr2_4 three_prime_UTR 13857090 13857356 13857090 ID=Msa0316680-mRNA-1:three_prime_utr;Parent=Msa0316680-mRNA-1
Gene Sequence

>Msa0316680

ATGGAGGGTAGTTCTAATGGAAGTTCTTCTTATTCTTATGTGATGGGTGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCTCCAATGATGATGATGCCTTTAGTCACTTCATCTCATCATAATGCTCATCATCCAATAAATTCCAATAACCACAACAATACTAATGCAAACAACATAAGCGGTCTTTTCCTTCCCATCCCTAATTCCACTAACAATAATAACAATCACTACACCAACTGTAATAACAACACCTCTTCTATCATGCTTCAAAATAACCATCAAAACACTCCTGGTTTAGGTTACTATTTCATGGACAACATCAACAACCATGGAAGCTCTTCTTCTTCTTCTTCTTCTTCTGTCAAATCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCCTACATCAACTGTCAAAAGGTTGGAGCACCAAGTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCAACTGCAGTGAGAATGGGTGGAGATGCAGTTGGATCAGGTTGTTTAGGTGAAGATCCAGCTCTAGATCAGTTCATGGAAGCTTACTGTGAGATGCTTATCAAGTATGAGCAAGAACTTTCCAAACCCTTAAAGGAAGCTATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTCAAAAATCTTACAGTTTCTTCTTCTTCAGATAATATTGCTTGTAGTGAAGGTGGAGATAGGAATGGATCATCTGAAGAAGATCATGTTGATATGTACAACAACATGATAGATCCTCAAGCAGAAGACAGGGAATTAAAGGGTCAGCTTTTGAGAAAATACAGTGGATACTTAGGCAGTCTGAAGCAAGAGTTTATGAAGAAAAGGAAAAAAGGAAAGCTTCCAAAAGAGGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAGTGGCCTTACCCATCTGAATCACAGAAGCTGGCTCTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGTCATCCACACTATTACATGGATAATGTTCTCAGCAATTCATATCCCATGGATCTATCTAACACCATGCTCTAG
Protein sequence

>Msa0316680

MEGSSNGSSSYSYVMGAFGENSGGLCPPMMMMPLVTSSHHNAHHPINSNNHNNTNANNISGLFLPIPNSTNNNNNHYTNCNNNTSSIMLQNNHQNTPGLGYYFMDNINNHGSSSSSSSSSVKSKIMAHPHYHRLLEAYINCQKVGAPSEVVARLEEACATAVRMGGDAVGSGCLGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIACSEGGDRNGSSEEDHVDMYNNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLSNSYPMDLSNTML*