AlfalfaGEDB | Msa0316680

M. sativa cultivar zhongmu-4 / Msa0316680

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005911 GO:0006355 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009506 GO:0009690 GO:0009691 GO:0009791 GO:0009889 GO:0009908 GO:0009934 GO:0009987 GO:0010468 GO:0010496 GO:0010497 GO:0010556 GO:0010817 GO:0015630 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022603 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034754 GO:0042445 GO:0042446 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046483 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048509 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090567 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03790.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0316680	AAG27464.1	96.606	383	6	2	1	378	1	381	0.0	765

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0316680	sp\|P46608\|HSBH1_SOYBN	73.881	402	58	14	1	378	1	379	2.83e-170	483

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0316680	TF	HB-KNOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001940	Msa0316680	0.814681	1.361170e-51	-8.615850e-47
Msa0006980	Msa0316680	0.804647	1.953438e-49	-8.615850e-47
Msa0015710	Msa0316680	0.805391	1.365579e-49	-8.615850e-47
Msa0017510	Msa0316680	0.804711	1.894949e-49	-8.615850e-47
Msa0017950	Msa0316680	0.813119	3.007005e-51	-8.615850e-47
Msa0024550	Msa0316680	0.879816	9.149065e-70	-8.615850e-47
Msa0036830	Msa0316680	0.815648	8.301210e-52	-8.615850e-47
Msa0080580	Msa0316680	0.808664	2.771285e-50	-8.615850e-47
Msa0081050	Msa0316680	0.814877	1.231408e-51	-8.615850e-47
Msa0092080	Msa0316680	0.802760	4.814203e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0316680	MtrunA17_Chr2g0289201	97.619	378	5	3	1	378	1	374	0.0	761
Msa0316680	MtrunA17_Chr5g0439391	64.259	263	79	4	121	378	46	298	4.12e-103	306
Msa0316680	MtrunA17_Chr1g0151961	58.039	255	93	3	118	362	116	366	5.51e-90	275
Msa0316680	MtrunA17_Chr5g0413201	53.878	245	111	1	111	353	62	306	3.47e-83	256
Msa0316680	MtrunA17_Chr1g0192791	49.402	251	107	5	116	353	14	257	5.22e-67	213
Msa0316680	MtrunA17_Chr1g0149651	31.890	254	132	6	122	341	174	420	6.83e-37	138
Msa0316680	MtrunA17_Chr2g0305101	30.739	257	149	6	112	341	85	339	4.50e-36	135
Msa0316680	MtrunA17_Chr3g0137241	31.600	250	140	6	122	341	107	355	2.93e-35	132
Msa0316680	MtrunA17_Chr4g0065241	30.576	278	167	6	90	341	38	315	6.21e-35	131
Msa0316680	MtrunA17_Chr5g0398181	28.516	256	142	5	121	341	27	276	1.61e-29	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0316680	AT1G62360.1	79.087	263	49	5	121	378	121	382	1.50e-132	384
Msa0316680	AT4G08150.1	52.427	309	125	5	68	362	85	385	1.59e-90	278
Msa0316680	AT1G23380.1	49.609	256	109	3	117	362	81	326	1.35e-80	250
Msa0316680	AT1G70510.1	50.410	244	121	0	117	360	65	308	3.28e-80	248
Msa0316680	AT1G23380.2	49.225	258	109	4	117	362	81	328	1.18e-78	245
Msa0316680	AT1G70510.2	49.597	248	121	1	117	360	65	312	6.44e-78	243
Msa0316680	AT4G32040.2	27.424	361	220	6	21	341	4	362	2.73e-42	152
Msa0316680	AT4G32040.1	27.424	361	220	6	21	341	4	362	3.93e-42	152
Msa0316680	AT5G25220.2	32.245	245	140	5	122	341	160	403	4.53e-40	147
Msa0316680	AT5G25220.1	32.245	245	140	5	122	341	160	403	4.62e-40	147

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Find 113 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATAGCTTCCTTTAA+GGG	0.321776	2_4:+13861919	None:intergenic
AAAAGGAAAGCTTCCAAAAG+AGG	0.530019	2_4:-13858407	Msa0316680:CDS
AAAGGCATCATCATCATTGG+AGG	0.581233	2_4:+13862714	None:intergenic
AACACCACAAGCAAGCACCG+AGG	0.759746	2_4:+13857328	None:intergenic
AACCTTGCCACCACTTCACT+TGG	0.434594	2_4:+13862081	None:intergenic
AAGAAGAAGAAGAGCTTCCA+TGG	0.445455	2_4:+13862466	None:intergenic
AAGCCTGCACAGATTTCCTT+TGG	0.372354	2_4:+13863124	None:intergenic
AAGGTTGAGTTACAGAAGAA+GGG	0.511993	2_4:+13863320	None:intergenic
AAGTCATCCACACTATTACA+TGG	0.581325	2_4:-13857410	Msa0316680:CDS
AATAACCATCAAAACACTCC+TGG	0.547863	2_4:-13862522	Msa0316680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTAAATGCTGAAAATGTG+TGG	-	chr2_4:13857259-13857278	Msa0316680:three_prime_UTR	30.0%
AAAGAAAAATCTGACCTAGA+AGG	-	chr2_4:13857556-13857575	Msa0316680:intron	30.0%
TGAATTAATACTCACTCACT+TGG	+	chr2_4:13857617-13857636	None:intergenic	30.0%
GTGAGTGAGTATTAATTCAA+TGG	-	chr2_4:13857618-13857637	Msa0316680:intron	30.0%
AGTGAGTATTAATTCAATGG+AGG	-	chr2_4:13857621-13857640	Msa0316680:intron	30.0%
GTGAGTATTAATTCAATGGA+GGG	-	chr2_4:13857622-13857641	Msa0316680:intron	30.0%
TGTTTGCATTAGTATTGTTG+TGG	+	chr2_4:13857789-13857808	None:intergenic	30.0%
ACTAATGCAAACAACATAAG+CGG	-	chr2_4:13857796-13857815	Msa0316680:intron	30.0%
ATGAAATAGTAACCTAAACC+AGG	+	chr2_4:13857928-13857947	None:intergenic	30.0%
TTCCAAATACTTGAAACCAA+AGG	-	chr2_4:13858913-13858932	Msa0316680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	13857090	13863361	13857090	ID=Msa0316680;Name=Msa0316680
chr2_4	mRNA	13857090	13863361	13857090	ID=Msa0316680-mRNA-1;Parent=Msa0316680;Name=Msa0316680-mRNA-1;_AED=0.12;_eAED=0.12;_QI=547\|1\|1\|1\|1\|1\|4\|267\|378
chr2_4	exon	13857090	13857560	13857090	ID=Msa0316680-mRNA-1:exon:5275;Parent=Msa0316680-mRNA-1
chr2_4	exon	13858351	13858598	13858351	ID=Msa0316680-mRNA-1:exon:5274;Parent=Msa0316680-mRNA-1
chr2_4	exon	13861857	13862112	13861857	ID=Msa0316680-mRNA-1:exon:5273;Parent=Msa0316680-mRNA-1
chr2_4	exon	13862386	13863361	13862386	ID=Msa0316680-mRNA-1:exon:5272;Parent=Msa0316680-mRNA-1
chr2_4	five_prime_UTR	13862815	13863361	13862815	ID=Msa0316680-mRNA-1:five_prime_utr;Parent=Msa0316680-mRNA-1
chr2_4	CDS	13862386	13862814	13862386	ID=Msa0316680-mRNA-1:cds;Parent=Msa0316680-mRNA-1
chr2_4	CDS	13861857	13862112	13861857	ID=Msa0316680-mRNA-1:cds;Parent=Msa0316680-mRNA-1
chr2_4	CDS	13858351	13858598	13858351	ID=Msa0316680-mRNA-1:cds;Parent=Msa0316680-mRNA-1
chr2_4	CDS	13857357	13857560	13857357	ID=Msa0316680-mRNA-1:cds;Parent=Msa0316680-mRNA-1
chr2_4	three_prime_UTR	13857090	13857356	13857090	ID=Msa0316680-mRNA-1:three_prime_utr;Parent=Msa0316680-mRNA-1

Gene Sequence

>Msa0316680

ATGGAGGGTAGTTCTAATGGAAGTTCTTCTTATTCTTATGTGATGGGTGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCTCCAATGATGATGATGCCTTTAGTCACTTCATCTCATCATAATGCTCATCATCCAATAAATTCCAATAACCACAACAATACTAATGCAAACAACATAAGCGGTCTTTTCCTTCCCATCCCTAATTCCACTAACAATAATAACAATCACTACACCAACTGTAATAACAACACCTCTTCTATCATGCTTCAAAATAACCATCAAAACACTCCTGGTTTAGGTTACTATTTCATGGACAACATCAACAACCATGGAAGCTCTTCTTCTTCTTCTTCTTCTTCTGTCAAATCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCCTACATCAACTGTCAAAAGGTTGGAGCACCAAGTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCAACTGCAGTGAGAATGGGTGGAGATGCAGTTGGATCAGGTTGTTTAGGTGAAGATCCAGCTCTAGATCAGTTCATGGAAGCTTACTGTGAGATGCTTATCAAGTATGAGCAAGAACTTTCCAAACCCTTAAAGGAAGCTATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTCAAAAATCTTACAGTTTCTTCTTCTTCAGATAATATTGCTTGTAGTGAAGGTGGAGATAGGAATGGATCATCTGAAGAAGATCATGTTGATATGTACAACAACATGATAGATCCTCAAGCAGAAGACAGGGAATTAAAGGGTCAGCTTTTGAGAAAATACAGTGGATACTTAGGCAGTCTGAAGCAAGAGTTTATGAAGAAAAGGAAAAAAGGAAAGCTTCCAAAAGAGGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAGTGGCCTTACCCATCTGAATCACAGAAGCTGGCTCTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGTCATCCACACTATTACATGGATAATGTTCTCAGCAATTCATATCCCATGGATCTATCTAACACCATGCTCTAG

Protein sequence

>Msa0316680

MEGSSNGSSSYSYVMGAFGENSGGLCPPMMMMPLVTSSHHNAHHPINSNNHNNTNANNISGLFLPIPNSTNNNNNHYTNCNNNTSSIMLQNNHQNTPGLGYYFMDNINNHGSSSSSSSSSVKSKIMAHPHYHRLLEAYINCQKVGAPSEVVARLEEACATAVRMGGDAVGSGCLGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIACSEGGDRNGSSEEDHVDMYNNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLSNSYPMDLSNTML*