AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0239030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239030 MtrunA17_Chr2g0289201 96.588 381 6 3 1 381 1 374 0.0 758
Msa0239030 MtrunA17_Chr5g0439391 58.033 305 95 6 82 381 22 298 2.71e-103 306
Msa0239030 MtrunA17_Chr1g0151961 58.039 255 93 3 121 365 116 366 5.28e-90 276
Msa0239030 MtrunA17_Chr5g0413201 54.812 239 106 1 120 356 68 306 5.35e-83 256
Msa0239030 MtrunA17_Chr1g0192791 49.402 251 107 5 119 356 14 257 6.49e-67 213
Msa0239030 MtrunA17_Chr1g0149651 31.890 254 132 6 125 344 174 420 6.72e-37 139
Msa0239030 MtrunA17_Chr2g0305101 30.980 255 147 6 117 344 87 339 5.09e-36 134
Msa0239030 MtrunA17_Chr3g0137241 31.600 250 140 6 125 344 107 355 2.16e-35 133
Msa0239030 MtrunA17_Chr4g0065241 30.233 258 155 5 112 344 58 315 1.17e-34 130
Msa0239030 MtrunA17_Chr5g0398181 28.516 256 142 5 124 344 27 276 1.75e-29 115
Msa0239030 MtrunA17_Chr4g0008591 42.667 75 43 0 272 346 347 421 2.23e-12 68.6
Msa0239030 MtrunA17_Chr3g0141941 39.535 86 46 2 261 346 327 406 5.18e-12 67.0
Msa0239030 MtrunA17_Chr7g0240371 48.333 60 31 0 287 346 307 366 5.81e-12 67.0
Msa0239030 MtrunA17_Chr1g0155681 39.535 86 46 2 261 346 338 417 7.77e-12 67.0
Msa0239030 MtrunA17_Chr8g0373801 39.560 91 50 3 263 350 554 642 9.89e-12 66.6
Msa0239030 MtrunA17_Chr3g0141931 42.254 71 41 0 276 346 339 409 1.96e-11 65.1
Msa0239030 MtrunA17_Chr4g0025521 46.667 60 32 0 287 346 404 463 2.04e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239030 AT1G62360.1 69.301 329 83 7 61 381 64 382 3.44e-133 386
Msa0239030 AT4G08150.1 51.111 315 122 6 69 365 85 385 3.46e-90 277
Msa0239030 AT1G23380.1 49.609 256 109 3 120 365 81 326 1.13e-80 250
Msa0239030 AT1G70510.1 50.410 244 121 0 120 363 65 308 3.98e-80 248
Msa0239030 AT1G23380.2 49.225 258 109 4 120 365 81 328 1.16e-78 245
Msa0239030 AT1G70510.2 49.597 248 121 1 120 363 65 312 9.90e-78 242
Msa0239030 AT5G25220.1 29.870 308 166 7 86 344 97 403 5.59e-41 150
Msa0239030 AT5G25220.2 29.870 308 166 7 86 344 97 403 6.58e-41 149
Msa0239030 AT4G32040.2 27.072 362 223 6 21 344 4 362 1.92e-40 147
Msa0239030 AT4G32040.1 27.072 362 223 6 21 344 4 362 1.98e-40 147
Msa0239030 AT5G11060.1 31.020 245 143 6 125 344 124 367 8.41e-36 135
Msa0239030 AT1G62990.1 30.924 249 142 6 124 344 29 275 1.80e-31 121
Msa0239030 AT1G75430.1 49.091 55 28 0 292 346 209 263 2.65e-11 64.3
Msa0239030 AT5G02030.1 46.667 60 32 0 287 346 350 409 2.97e-11 65.5
Msa0239030 AT1G19700.1 46.667 60 32 0 287 346 353 412 4.28e-11 64.7
Msa0239030 AT1G19700.3 46.667 60 32 0 287 346 353 412 4.28e-11 64.7
Msa0239030 AT1G19700.5 46.667 60 32 0 287 346 353 412 4.28e-11 64.7
Msa0239030 AT1G19700.4 46.667 60 32 0 287 346 353 412 4.28e-11 64.7
Msa0239030 AT1G19700.2 46.667 60 32 0 287 346 353 412 4.28e-11 64.7
Msa0239030 AT4G36870.2 39.024 82 46 2 267 346 480 559 7.27e-11 64.3
Msa0239030 AT4G36870.1 39.024 82 46 2 267 346 480 559 7.27e-11 64.3
Msa0239030 AT2G27220.1 45.000 60 33 0 287 346 230 289 9.29e-11 63.5
Msa0239030 AT2G27220.3 45.000 60 33 0 287 346 230 289 9.29e-11 63.5

Find 112 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTATTGTTGTTGTTGTTAT+TGG 0.153413 2_2:+13046827 None:intergenic
TTATTATTGTTAGTGGAATT+AGG 0.210507 2_2:+13046768 None:intergenic
AGAACTTTCCAAACCCTTAA+AGG 0.230018 2_2:-13046098 Msa0239030:CDS
TCTTATGTGATGGGTGCTTT+TGG 0.272814 2_2:-13046936 Msa0239030:CDS
AGCAGAAGACAGGGAATTAA+AGG 0.275275 2_2:-13042456 Msa0239030:CDS
CATAGCTTCCTTTAAGGGTT+TGG 0.275443 2_2:+13046090 None:intergenic
ATCTGACCTAGAAGGCAAAA+AGG 0.277097 2_2:-13047042 Msa0239030:five_prime_UTR
AATTGTTGCCTTGCCTCTTT+TGG 0.282916 2_2:+13042353 None:intergenic
TGGTTTAGGTTACTATTTCA+TGG 0.291622 2_2:-13046667 Msa0239030:CDS
AAAAGCATAGCTTCCTTTAA+GGG 0.321776 2_2:+13046085 None:intergenic
TCTTCTTCTTCAGATAATAT+TGG 0.323037 2_2:-13046022 Msa0239030:intron
TATTATTGTTAGTGGAATTA+GGG 0.324374 2_2:+13046769 None:intergenic
TAACCCTACGTTACGTTGTA+AGG 0.362683 2_2:-13041246 Msa0239030:three_prime_UTR
TTGTTGTTATTGGAATTTAT+TGG 0.371727 2_2:+13046837 None:intergenic
AAGCCTGCACAGATTTCCTT+TGG 0.372354 2_2:+13047289 None:intergenic
TTCTTCTTATTCTTATGTGA+TGG 0.373753 2_2:-13046946 Msa0239030:CDS
GCAGTTGGATCAGGTTGTTT+AGG 0.376419 2_2:-13046184 Msa0239030:CDS
GTGATTGTTATTATTGTTAG+TGG 0.377361 2_2:+13046761 None:intergenic
AACACAAACACTCCTGGTTT+AGG 0.382541 2_2:-13046681 Msa0239030:CDS
TCAATGGAGGGTAGTTCTAA+TGG 0.389732 2_2:-13046972 Msa0239030:CDS
GGAGGTTGAGTTACAGAAGA+AGG 0.395261 2_2:+13047492 None:intergenic
GCTTGTGGTGTTAAAAGTCT+TGG 0.407936 2_2:-13041276 Msa0239030:three_prime_UTR
ATCAGAAGCAAATAAACAAC+TGG 0.411205 2_2:-13041457 Msa0239030:CDS
TCTTCTTATTCTTATGTGAT+GGG 0.426756 2_2:-13046945 Msa0239030:CDS
CAAGGCAACAATTGCTTGAA+TGG 0.428670 2_2:-13042343 Msa0239030:CDS
AACCTTGCCACCACTTCACT+TGG 0.434594 2_2:+13046247 None:intergenic
CACACAAGGGTCACCCGCCC+GGG 0.436593 2_2:+13047130 None:intergenic
TCCAGCTCTAGATCAGTTCA+TGG 0.439689 2_2:-13046155 Msa0239030:CDS
GTGAGGATGAGCCATGATCT+TGG 0.442354 2_2:+13046593 None:intergenic
AATTCCCTGTCTTCTGCTTG+AGG 0.446914 2_2:+13042461 None:intergenic
AGAGGTGTTGTTATTACAGT+TGG 0.455218 2_2:+13046734 None:intergenic
AGCAAGAGTTTATGAAGAAA+AGG 0.455849 2_2:-13042391 Msa0239030:CDS
AGAAAATACAGTGGATACTT+AGG 0.456169 2_2:-13042422 Msa0239030:CDS
TCACACAAGGGTCACCCGCC+CGG 0.458954 2_2:+13047129 None:intergenic
AAGAGGAAGAAGAGCTTCCA+TGG 0.462925 2_2:+13046631 None:intergenic
ACTAAAGGCATCATCATCAT+TGG 0.476116 2_2:+13046888 None:intergenic
GAGGTTGAGTTACAGAAGAA+GGG 0.477465 2_2:+13047493 None:intergenic
TCCTCACTATCACCGTCTCT+TGG 0.481181 2_2:-13046577 Msa0239030:CDS
TTCAGAGGACATGCAGTTTG+TGG 0.481599 2_2:-13041402 Msa0239030:CDS
TATTAGACGGTTCTTTATGA+AGG 0.485627 2_2:-13041086 Msa0239030:three_prime_UTR
GAGTGTTTGTGTTGTTGTGA+TGG 0.486511 2_2:+13046691 None:intergenic
GTGAGTGAGTATTAATTCAA+TGG 0.487645 2_2:-13046988 Msa0239030:exon
TAGATCCTCAAGCAGAAGAC+AGG 0.488640 2_2:-13042466 Msa0239030:CDS
TTCTGTCAAATCCAAGATCA+TGG 0.491565 2_2:-13046604 Msa0239030:CDS
CTTGTAGTGAAGGTGGAGAT+AGG 0.494451 2_2:-13042535 Msa0239030:CDS
TTTCCAAAGGAAATCTGTGC+AGG 0.494548 2_2:-13047292 Msa0239030:five_prime_UTR
TCAATCAAAGGAAACGGCAC+TGG 0.497928 2_2:-13041430 Msa0239030:CDS
CTGGCTCTAGCAGAGTCAAC+AGG 0.498247 2_2:-13041485 Msa0239030:CDS
ACAGAAGAAGGGTTAGTATG+AGG 0.499335 2_2:+13047504 None:intergenic
ATGTGCAACTGCAGTGAGAA+TGG 0.501403 2_2:-13046215 Msa0239030:CDS
GGTGGAGATGCAGTTGGATC+AGG 0.509504 2_2:-13046193 Msa0239030:CDS
GGACATGCAGTTTGTGGTGA+TGG 0.522795 2_2:-13041396 Msa0239030:CDS
GCAGAAGACAGGGAATTAAA+GGG 0.524288 2_2:-13042455 Msa0239030:CDS
TAGTGGAATTAGGGATAGGA+AGG 0.524748 2_2:+13046778 None:intergenic
CTCTCTGTCTCTCTAGCTAG+TGG 0.526611 2_2:+13047381 None:intergenic
AGCCTACATCAACTGTCAAA+AGG 0.527463 2_2:-13046553 Msa0239030:intron
AAAAGGAAAGCTTCCAAAAG+AGG 0.530019 2_2:-13042366 Msa0239030:CDS
TTGTTAGTGGAATTAGGGAT+AGG 0.534059 2_2:+13046774 None:intergenic
GGATTTGACAGAAGAAGAAG+AGG 0.537668 2_2:+13046614 None:intergenic
GGTTTATCAATCAAAGGAAA+CGG 0.544135 2_2:-13041436 Msa0239030:CDS
AGTGAAGGTGGAGATAGGAA+TGG 0.544711 2_2:-13042530 Msa0239030:CDS
ATAACAGGAATCACAGAAGC+TGG 0.544820 2_2:-13041504 Msa0239030:intron
GAAGGGTTAGTATGAGGCAT+TGG 0.549891 2_2:+13047510 None:intergenic
TCCATGAACTGATCTAGAGC+TGG 0.552608 2_2:+13046154 None:intergenic
ATTACCTCGGTGCTTGCTTG+TGG 0.553766 2_2:-13041291 Msa0239030:three_prime_UTR
ATGTAATAGTGTGGATGACT+TGG 0.557999 2_2:+13041371 None:intergenic
CACAACAACACAAACACTCC+TGG 0.558260 2_2:-13046687 Msa0239030:CDS
AGTGAGTATTAATTCAATGG+AGG 0.559921 2_2:-13046985 Msa0239030:exon
ACAACTGGTTTATCAATCAA+AGG 0.560044 2_2:-13041442 Msa0239030:CDS
TTTGAATCATTAAAATAGCG+AGG 0.565440 2_2:-13041124 Msa0239030:three_prime_UTR
CACCAAGTGAAGTGGTGGCA+AGG 0.566973 2_2:-13046249 Msa0239030:CDS
TGATGAGATGAAGTGACTAA+AGG 0.572274 2_2:+13046873 None:intergenic
ATATGATCAGCTTGTAGTGA+AGG 0.580233 2_2:-13042545 Msa0239030:intron
AAAGGCATCATCATCATTGG+AGG 0.581233 2_2:+13046891 None:intergenic
AAGTCATCCACACTATTACA+TGG 0.581325 2_2:-13041369 Msa0239030:CDS
CATGGTGTTAGATAGATCCA+TGG 0.582210 2_2:+13041322 None:intergenic
ATAAGCTGCTGGTTATTAGA+CGG 0.585249 2_2:-13041099 Msa0239030:three_prime_UTR
ATAGCGAGGAAATAAGCTGC+TGG 0.585397 2_2:-13041110 Msa0239030:three_prime_UTR
TACATGAAGAAGTAGTGAAG+AGG 0.589580 2_2:+13047242 None:intergenic
TGTGCAACTGCAGTGAGAAT+GGG 0.589860 2_2:-13046214 Msa0239030:CDS
GGTTGGAGCACCAAGTGAAG+TGG 0.591898 2_2:-13046257 Msa0239030:CDS
TCTCAGCAATTCATATCCCA+TGG 0.592615 2_2:-13041339 Msa0239030:CDS
TCTAGCTAGTGGATAATACA+AGG 0.595066 2_2:+13047392 None:intergenic
ACAAACTGCATGTCCTCTGA+AGG 0.595663 2_2:+13041404 None:intergenic
TGATCAGCTTGTAGTGAAGG+TGG 0.598391 2_2:-13042542 Msa0239030:intron
TGAATTAATACTCACTCACT+TGG 0.600829 2_2:+13046992 None:intergenic
GTGAGTATTAATTCAATGGA+GGG 0.604163 2_2:-13046984 Msa0239030:exon
GGCAACAATTGCTTGAATGG+TGG 0.608396 2_2:-13042340 Msa0239030:CDS
TCCAAGAGACGGTGATAGTG+AGG 0.612274 2_2:+13046576 None:intergenic
ATGCCTTACAACGTAACGTA+GGG 0.613119 2_2:+13041243 None:intergenic
TGGAGCACCAAGTGAAGTGG+TGG 0.614555 2_2:-13046254 Msa0239030:CDS
TCATAAATGCTGAAAATGTG+TGG 0.618261 2_2:-13047335 Msa0239030:five_prime_UTR
ACTAATGCAAACAACATAAG+CGG 0.624162 2_2:-13046807 Msa0239030:CDS
GAAAGCTTCCAAAAGAGGCA+AGG 0.624760 2_2:-13042361 Msa0239030:CDS
TGATGTAGGCTTCCAAGAGA+CGG 0.625494 2_2:+13046565 None:intergenic
AGAAAGCAGTAGAGTGCACG+CGG 0.626137 2_2:+13047432 None:intergenic
ACATTATCCATGTAATAGTG+TGG 0.627160 2_2:+13041362 None:intergenic
ATGGACAACATCAACAACCA+TGG 0.630008 2_2:-13046648 Msa0239030:CDS
ACGGCACTGGAAGCCTTCAG+AGG 0.633606 2_2:-13041417 Msa0239030:CDS
GTGGTGCTTACAGATGGGTA+AGG 0.637343 2_2:+13042299 None:intergenic
ATGGTGTTAGATAGATCCAT+GGG 0.639715 2_2:+13041323 None:intergenic
AGATCCTCAAGCAGAAGACA+GGG 0.640900 2_2:-13042465 Msa0239030:CDS
CCATGCTCTAGTTATTACCT+CGG 0.642109 2_2:-13041304 Msa0239030:exon
ATGAAATAGTAACCTAAACC+AGG 0.642596 2_2:+13046669 None:intergenic
CCGAGGTAATAACTAGAGCA+TGG 0.644204 2_2:+13041304 None:intergenic
AATGCCTTACAACGTAACGT+AGG 0.645137 2_2:+13041242 None:intergenic
AGAATGGGTGGAGATGCAGT+TGG 0.655702 2_2:-13046199 Msa0239030:CDS
GCAACTGCAGTGAGAATGGG+TGG 0.659150 2_2:-13046211 Msa0239030:CDS
GGTGGAGCAGACATTACAAG+TGG 0.680780 2_2:-13042322 Msa0239030:CDS
AAAGCAGTAGAGTGCACGCG+GGG 0.690369 2_2:+13047434 None:intergenic
GAAAGCAGTAGAGTGCACGC+GGG 0.700141 2_2:+13047433 None:intergenic
AACACCACAAGCAAGCACCG+AGG 0.759746 2_2:+13041287 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATATTTAAAAAAA+AGG + chr2_2:13045599-13045618 None:intergenic 0.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr2_2:13043155-13043174 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr2_2:13043156-13043175 None:intergenic 10.0%
!! ATTCTAATAATTAATAACAA+TGG - chr2_2:13044713-13044732 Msa0239030:intron 10.0%
!! TTTGAATATATGAAAATAAA+AGG + chr2_2:13045942-13045961 None:intergenic 10.0%
!! AAATTTAATTAGAAATATTG+TGG + chr2_2:13046322-13046341 None:intergenic 10.0%
!! TTGTCAATATTAGTAATAAA+TGG + chr2_2:13042173-13042192 None:intergenic 15.0%
!!! TTCATAAATTTTTTACTTCA+TGG - chr2_2:13042270-13042289 Msa0239030:intron 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr2_2:13043154-13043173 None:intergenic 15.0%
!! AAAATTGTGTCAATTAAATT+GGG - chr2_2:13043191-13043210 Msa0239030:intron 15.0%
!! TAAATAATAACCAATGAATT+AGG - chr2_2:13043481-13043500 Msa0239030:intron 15.0%
!! AAATAATAACCAATGAATTA+GGG - chr2_2:13043482-13043501 Msa0239030:intron 15.0%
!! AATAAAATATTCCAACTATA+GGG + chr2_2:13043840-13043859 None:intergenic 15.0%
!! TAATAAAATATTCCAACTAT+AGG + chr2_2:13043841-13043860 None:intergenic 15.0%
!! GTGAATGTTTAATTAAATAA+AGG + chr2_2:13045114-13045133 None:intergenic 15.0%
!! TAAATATAGAAATCTAACAT+TGG + chr2_2:13045627-13045646 None:intergenic 15.0%
!! TACTATAATTTATGAATAAC+AGG - chr2_2:13047042-13047061 Msa0239030:five_prime_UTR 15.0%
!!! TAATACAAGGTTTTTTATGA+AGG + chr2_2:13041159-13041178 None:intergenic 20.0%
!!! TTTTATGGTAAAAAAGTAAC+AGG + chr2_2:13041411-13041430 None:intergenic 20.0%
!!! TTGTTGTTATTGGAATTTAT+TGG + chr2_2:13041727-13041746 None:intergenic 20.0%
!! TATTATTGTTAGTGGAATTA+GGG + chr2_2:13041795-13041814 None:intergenic 20.0%
!! TTATTATTGTTAGTGGAATT+AGG + chr2_2:13041796-13041815 None:intergenic 20.0%
!! TAAATGGAAATGAAAACAAA+AGG + chr2_2:13042157-13042176 None:intergenic 20.0%
!! TTTATCATCTATGCTTAAAA+GGG + chr2_2:13042225-13042244 None:intergenic 20.0%
!!! TACTTCATGGAAATTATTTT+AGG - chr2_2:13042283-13042302 Msa0239030:intron 20.0%
!!! AAAATCTGAATAGTATTTTC+TGG + chr2_2:13042593-13042612 None:intergenic 20.0%
!! ATGGTACATATATATTTCAT+TGG - chr2_2:13042944-13042963 Msa0239030:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr2_2:13043021-13043040 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr2_2:13043058-13043077 None:intergenic 20.0%
!! ATTTAGTGTTACATTGTATT+GGG + chr2_2:13043090-13043109 None:intergenic 20.0%
!! TATTTAGTGTTACATTGTAT+TGG + chr2_2:13043091-13043110 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr2_2:13043131-13043150 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG - chr2_2:13043190-13043209 Msa0239030:intron 20.0%
!! TTTGTAATGAATCCAAAATT+TGG - chr2_2:13043419-13043438 Msa0239030:intron 20.0%
!!! TTGATTTTAGATTTACGATA+TGG - chr2_2:13043641-13043660 Msa0239030:intron 20.0%
!!! TTACTACTATATACTTCTTT+TGG + chr2_2:13044277-13044296 None:intergenic 20.0%
!! AAACATTGAATTGAAAACTT+TGG + chr2_2:13044316-13044335 None:intergenic 20.0%
!! GATATACTACAAAAATAGAT+GGG + chr2_2:13044359-13044378 None:intergenic 20.0%
!! TGATATACTACAAAAATAGA+TGG + chr2_2:13044360-13044379 None:intergenic 20.0%
!!! TTTAGGAAATTAGTTTTGAA+GGG + chr2_2:13044434-13044453 None:intergenic 20.0%
!!! TTTTAGGAAATTAGTTTTGA+AGG + chr2_2:13044435-13044454 None:intergenic 20.0%
!! AAACATGTATAATAGATAAG+TGG + chr2_2:13044469-13044488 None:intergenic 20.0%
!!! GATCGATTTTCTTTATAAAA+TGG + chr2_2:13044598-13044617 None:intergenic 20.0%
!! ATTACTTCAAACATAATCAA+AGG + chr2_2:13044739-13044758 None:intergenic 20.0%
!! TATTATCATAGGGATAAAAA+TGG + chr2_2:13044775-13044794 None:intergenic 20.0%
!! CAAAATACTTAACTTATGAA+GGG + chr2_2:13044866-13044885 None:intergenic 20.0%
!! TACATAAAAGTAAACCAATA+AGG + chr2_2:13045270-13045289 None:intergenic 20.0%
!!! AATTAAAAATAGGAGTACAA+GGG - chr2_2:13045309-13045328 Msa0239030:intron 20.0%
!! TCCTATAATCAAATATATGT+GGG + chr2_2:13045383-13045402 None:intergenic 20.0%
!! AGGTTAAAATATTAACAATG+TGG + chr2_2:13045579-13045598 None:intergenic 20.0%
!!! TGACTATAAATTGTTTTTAC+CGG - chr2_2:13045774-13045793 Msa0239030:intron 20.0%
!! GCAAATAATATAACATTAGA+AGG + chr2_2:13045969-13045988 None:intergenic 20.0%
!! TTTATGAAGAAAAGGAAAAA+AGG - chr2_2:13046178-13046197 Msa0239030:CDS 20.0%
!!! AAGGATTCAAATTTTTAAAG+TGG + chr2_2:13046284-13046303 None:intergenic 20.0%
!!! TTTGATTTCTTTCATTTCAT+AGG - chr2_2:13046340-13046359 Msa0239030:intron 20.0%
!! ATTTATTAAAATCCGTAACT+AGG + chr2_2:13046372-13046391 None:intergenic 20.0%
!! TTTGCAAATTTGAAAAATCA+TGG + chr2_2:13046537-13046556 None:intergenic 20.0%
!!! ATTTGAAGACTGATTTTTTA+AGG - chr2_2:13046613-13046632 Msa0239030:CDS 20.0%
!! TCTATATCAAATGTGTAAAT+TGG - chr2_2:13046685-13046704 Msa0239030:CDS 20.0%
!! AATACATGTTTATATGGTTA+GGG + chr2_2:13046926-13046945 None:intergenic 20.0%
!! TTGTACAATACATGTTTATA+TGG + chr2_2:13046932-13046951 None:intergenic 20.0%
!!! GTACAATTTACTTTTTTTGA+AGG - chr2_2:13046946-13046965 Msa0239030:CDS 20.0%
!! CATAAATAGTGAGTGTTTTA+TGG + chr2_2:13041372-13041391 None:intergenic 25.0%
!!! TACTTTTTTACCATAAAACC+CGG - chr2_2:13041413-13041432 Msa0239030:CDS 25.0%
!!! TTTGTTTTTGTTTCACACAA+GGG + chr2_2:13041447-13041466 None:intergenic 25.0%
!!! TTTTGTTTTTGTTTCACACA+AGG + chr2_2:13041448-13041467 None:intergenic 25.0%
!!! TAATAAAAAGGAAGTGTTAC+TGG - chr2_2:13041543-13041562 Msa0239030:intron 25.0%
! TTCTTCTTATTCTTATGTGA+TGG - chr2_2:13041615-13041634 Msa0239030:intron 25.0%
! TCTTCTTATTCTTATGTGAT+GGG - chr2_2:13041616-13041635 Msa0239030:intron 25.0%
!! AGTATTGTTGTTGTTGTTAT+TGG + chr2_2:13041737-13041756 None:intergenic 25.0%
!! GTGATTGTTATTATTGTTAG+TGG + chr2_2:13041803-13041822 None:intergenic 25.0%
!!! CTTTTTTTGTTTGACAAGTT+TGG - chr2_2:13042089-13042108 Msa0239030:intron 25.0%
! ATAATTGTACTTTGATACTG+TGG - chr2_2:13042131-13042150 Msa0239030:intron 25.0%
! CTTTATCATCTATGCTTAAA+AGG + chr2_2:13042226-13042245 None:intergenic 25.0%
!!! TCATGGAAATTATTTTAGGT+TGG - chr2_2:13042287-13042306 Msa0239030:intron 25.0%
!! AAACTGTAAGATTTTTGAAC+TGG + chr2_2:13042520-13042539 None:intergenic 25.0%
! TCTTCTTCTTCAGATAATAT+TGG - chr2_2:13042539-13042558 Msa0239030:intron 25.0%
! TCTTAATTACTCTTTCTCAT+TGG - chr2_2:13042790-13042809 Msa0239030:intron 25.0%
!! GCGTTTTTGTCTAAAAATAA+AGG - chr2_2:13042905-13042924 Msa0239030:intron 25.0%
! TGTCTAAAAATAAAGGTAGA+TGG - chr2_2:13042912-13042931 Msa0239030:intron 25.0%
! CATATATATTTCATTGGTGT+TGG - chr2_2:13042950-13042969 Msa0239030:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr2_2:13043022-13043041 None:intergenic 25.0%
!!! TGAAATGGATCAGTTATTTT+GGG + chr2_2:13043043-13043062 None:intergenic 25.0%
!! TTGAAATGGATCAGTTATTT+TGG + chr2_2:13043044-13043063 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr2_2:13043132-13043151 None:intergenic 25.0%
!! TTAAAATTTCCCTTTTGATG+AGG - chr2_2:13043325-13043344 Msa0239030:intron 25.0%
!! AAAAATCTTGCAAAGTTGAT+TGG - chr2_2:13043679-13043698 Msa0239030:intron 25.0%
!!! TCATAGCTTAATCTCTTTTT+TGG + chr2_2:13043718-13043737 None:intergenic 25.0%
! CAAATTCATCATTATTCTCA+AGG + chr2_2:13043754-13043773 None:intergenic 25.0%
!! TTTTTGTAGTATATCATCGT+AGG - chr2_2:13044364-13044383 Msa0239030:intron 25.0%
! CTAAGATGATCTTTCTATAT+GGG + chr2_2:13044532-13044551 None:intergenic 25.0%
! TTACAAACTTGGATTTAGTT+AGG + chr2_2:13044563-13044582 None:intergenic 25.0%
! TAACTAAATCCAAGTTTGTA+AGG - chr2_2:13044562-13044581 Msa0239030:intron 25.0%
! ACAGTGTAATCTTAATAAGA+AGG + chr2_2:13044689-13044708 None:intergenic 25.0%
! AGTGGAAATCTATTATCATA+GGG + chr2_2:13044785-13044804 None:intergenic 25.0%
! CCAAAATACTTAACTTATGA+AGG + chr2_2:13044867-13044886 None:intergenic 25.0%
!! CCTTCATAAGTTAAGTATTT+TGG - chr2_2:13044864-13044883 Msa0239030:intron 25.0%
!!! TTTAACTTTGTCTTGTTTGA+AGG - chr2_2:13044923-13044942 Msa0239030:intron 25.0%
!! AAGCTACTAAATTATTGGTT+AGG + chr2_2:13045158-13045177 None:intergenic 25.0%
! AAGCTAAGCTACTAAATTAT+TGG + chr2_2:13045163-13045182 None:intergenic 25.0%
! AATAATTTAGTAGCTTAGCT+TGG - chr2_2:13045162-13045181 Msa0239030:intron 25.0%
!! ACTATGTTTGTTAACCTTAT+TGG - chr2_2:13045253-13045272 Msa0239030:intron 25.0%
! GAAGAGTTCCAATTAAAAAT+AGG - chr2_2:13045299-13045318 Msa0239030:intron 25.0%
!!! CTTGTACTCCTATTTTTAAT+TGG + chr2_2:13045310-13045329 None:intergenic 25.0%
!! CAATTAAAAATAGGAGTACA+AGG - chr2_2:13045308-13045327 Msa0239030:intron 25.0%
!! ATTAAAAATAGGAGTACAAG+GGG - chr2_2:13045310-13045329 Msa0239030:intron 25.0%
! TATAATCAAATATATGTGGG+GGG + chr2_2:13045380-13045399 None:intergenic 25.0%
! CTATAATCAAATATATGTGG+GGG + chr2_2:13045381-13045400 None:intergenic 25.0%
! CCTATAATCAAATATATGTG+GGG + chr2_2:13045382-13045401 None:intergenic 25.0%
! GTCCTATAATCAAATATATG+TGG + chr2_2:13045384-13045403 None:intergenic 25.0%
! ATATTTGATTATAGGACCTA+AGG - chr2_2:13045387-13045406 Msa0239030:intron 25.0%
! ATGGATATTTGTATATATGG+GGG + chr2_2:13045524-13045543 None:intergenic 25.0%
! CATGGATATTTGTATATATG+GGG + chr2_2:13045525-13045544 None:intergenic 25.0%
! CCATGGATATTTGTATATAT+GGG + chr2_2:13045526-13045545 None:intergenic 25.0%
! ACCATGGATATTTGTATATA+TGG + chr2_2:13045527-13045546 None:intergenic 25.0%
!! ATCAAAATGGTTAGGATTTT+TGG + chr2_2:13045550-13045569 None:intergenic 25.0%
!!! ATTTTAATGTTCTGTTTACG+AGG - chr2_2:13045646-13045665 Msa0239030:intron 25.0%
! ATTACTTACACATGAATAGA+AGG + chr2_2:13045690-13045709 None:intergenic 25.0%
! AAATGTCATAACATAGAACT+TGG - chr2_2:13045844-13045863 Msa0239030:intron 25.0%
! TCAAATACTAAATGCATGTT+CGG + chr2_2:13046599-13046618 None:intergenic 25.0%
!! AGTTGTTTGCATTAATTTGA+AGG - chr2_2:13046646-13046665 Msa0239030:CDS 25.0%
! TCAAATGTGTAAATTGGATT+TGG - chr2_2:13046691-13046710 Msa0239030:CDS 25.0%
! CAAATGTGTAAATTGGATTT+GGG - chr2_2:13046692-13046711 Msa0239030:CDS 25.0%
!! TCAAAATCTGCATTGATATT+TGG - chr2_2:13046818-13046837 Msa0239030:CDS 25.0%
! CAATACATGTTTATATGGTT+AGG + chr2_2:13046927-13046946 None:intergenic 25.0%
! TTTGAATCATTAAAATAGCG+AGG - chr2_2:13047437-13047456 Msa0239030:five_prime_UTR 25.0%
TCATAAATGCTGAAAATGTG+TGG - chr2_2:13041226-13041245 Msa0239030:three_prime_UTR 30.0%
! GATTAACACTCATTTTCCAA+AGG - chr2_2:13041256-13041275 Msa0239030:three_prime_UTR 30.0%
! AAATAGTGAGTGTTTTATGG+TGG + chr2_2:13041369-13041388 None:intergenic 30.0%
!!! ACTTTTTTACCATAAAACCC+GGG - chr2_2:13041414-13041433 Msa0239030:CDS 30.0%
AAAGAAAAATCTGACCTAGA+AGG - chr2_2:13041511-13041530 Msa0239030:intron 30.0%
AGGCAAAAAGGGTAATAAAA+AGG - chr2_2:13041531-13041550 Msa0239030:intron 30.0%
TGAATTAATACTCACTCACT+TGG + chr2_2:13041572-13041591 None:intergenic 30.0%
GTGAGTGAGTATTAATTCAA+TGG - chr2_2:13041573-13041592 Msa0239030:intron 30.0%
AGTGAGTATTAATTCAATGG+AGG - chr2_2:13041576-13041595 Msa0239030:intron 30.0%
GTGAGTATTAATTCAATGGA+GGG - chr2_2:13041577-13041596 Msa0239030:intron 30.0%
ACTAATGCAAACAACATAAG+CGG - chr2_2:13041754-13041773 Msa0239030:intron 30.0%
!!! ATTTTGAAGCATGATAGAAG+AGG + chr2_2:13041848-13041867 None:intergenic 30.0%
ATGAAATAGTAACCTAAACC+AGG + chr2_2:13041895-13041914 None:intergenic 30.0%
! TGGTTTAGGTTACTATTTCA+TGG - chr2_2:13041894-13041913 Msa0239030:intron 30.0%
! AAAAGCATAGCTTCCTTTAA+GGG + chr2_2:13042479-13042498 None:intergenic 30.0%
! AAAAAGCATAGCTTCCTTTA+AGG + chr2_2:13042480-13042499 None:intergenic 30.0%
!!! AAGCTATGCTTTTTCTTCAA+AGG - chr2_2:13042486-13042505 Msa0239030:CDS 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr2_2:13043147-13043166 None:intergenic 30.0%
TTGTGTCAATTAAATTGGGA+CGG - chr2_2:13043195-13043214 Msa0239030:intron 30.0%
!!! CCTGATAGTGTTGTTTTTAT+GGG - chr2_2:13043264-13043283 Msa0239030:intron 30.0%
GTAATGAATCCAAAATTTGG+AGG - chr2_2:13043422-13043441 Msa0239030:intron 30.0%
TCACAAGTTTCTTTCCAAAT+TGG - chr2_2:13043551-13043570 Msa0239030:intron 30.0%
TTAAGCTATGATGTGTTAGT+AGG - chr2_2:13043727-13043746 Msa0239030:intron 30.0%
! TTTTCTCATTTGTCTCATCA+AGG - chr2_2:13043796-13043815 Msa0239030:intron 30.0%
!! ATGTATATTTTTGTGTCTGC+AGG - chr2_2:13043910-13043929 Msa0239030:intron 30.0%
CAACATAGAAAAATGCATGT+AGG + chr2_2:13044041-13044060 None:intergenic 30.0%
AGCACAAGTATTATAACATG+TGG + chr2_2:13044072-13044091 None:intergenic 30.0%
TTGTGCTTAAGAAAAAACTG+TGG - chr2_2:13044085-13044104 Msa0239030:intron 30.0%
ATCCAATGCATTATGTGATA+AGG + chr2_2:13044196-13044215 None:intergenic 30.0%
!! TTCTAGCTTTCAACTATGTA+TGG - chr2_2:13044250-13044269 Msa0239030:intron 30.0%
!! TCTAGCTTTCAACTATGTAT+GGG - chr2_2:13044251-13044270 Msa0239030:intron 30.0%
!!! AGTGGAAGTTCTAGTTTTTT+AGG + chr2_2:13044451-13044470 None:intergenic 30.0%
CCTAAGATGATCTTTCTATA+TGG + chr2_2:13044533-13044552 None:intergenic 30.0%
CCATATAGAAAGATCATCTT+AGG - chr2_2:13044530-13044549 Msa0239030:intron 30.0%
! AGAAAGATCATCTTAGGTTT+TGG - chr2_2:13044536-13044555 Msa0239030:intron 30.0%
! GAAAGATCATCTTAGGTTTT+GGG - chr2_2:13044537-13044556 Msa0239030:intron 30.0%
! AATCCAAGTTTGTAAGGTTT+TGG - chr2_2:13044568-13044587 Msa0239030:intron 30.0%
! ATCCAAGTTTGTAAGGTTTT+GGG - chr2_2:13044569-13044588 Msa0239030:intron 30.0%
AAACGCATAGCTTAACTAAA+TGG + chr2_2:13044642-13044661 None:intergenic 30.0%
! TTAAGCTATGCGTTTTTCTT+CGG - chr2_2:13044647-13044666 Msa0239030:intron 30.0%
CAGTGGAAATCTATTATCAT+AGG + chr2_2:13044786-13044805 None:intergenic 30.0%
CTATGATAATAGATTTCCAC+TGG - chr2_2:13044784-13044803 Msa0239030:intron 30.0%
ATAAAGTTTATTCCTCGTGA+AGG + chr2_2:13044899-13044918 None:intergenic 30.0%
!! TTTGTCTTGTTTGAAGGAAA+AGG - chr2_2:13044929-13044948 Msa0239030:intron 30.0%
TAATTAAACATTCACCCTTG+TGG - chr2_2:13045119-13045138 Msa0239030:intron 30.0%
!! GACAAATTTTGATACCACAA+GGG + chr2_2:13045136-13045155 None:intergenic 30.0%
AGCTAGTTGAAATAGTATCA+TGG - chr2_2:13045214-13045233 Msa0239030:intron 30.0%
CCCCACATATATTTGATTAT+AGG - chr2_2:13045379-13045398 Msa0239030:intron 30.0%
TAATTTGGCATTCAGTTACT+TGG + chr2_2:13045475-13045494 None:intergenic 30.0%
CCCATATATACAAATATCCA+TGG - chr2_2:13045523-13045542 Msa0239030:intron 30.0%
AATGTGGAGTGAAATCAAAA+TGG + chr2_2:13045563-13045582 None:intergenic 30.0%
! GGAATCAACTTTTTGCAAAT+CGG - chr2_2:13045865-13045884 Msa0239030:intron 30.0%
AGAAAATACAGTGGATACTT+AGG - chr2_2:13046139-13046158 Msa0239030:CDS 30.0%
AGCAAGAGTTTATGAAGAAA+AGG - chr2_2:13046170-13046189 Msa0239030:CDS 30.0%
!! AGTGATTTGCTAAAATTGTG+TGG - chr2_2:13046446-13046465 Msa0239030:intron 30.0%
TTGGAGCTACAAAAAAATCA+CGG + chr2_2:13046475-13046494 None:intergenic 30.0%
TTATTGCAAAAGCTACACAT+TGG + chr2_2:13046494-13046513 None:intergenic 30.0%
GCAAATTTGAAAAATCATGG+TGG + chr2_2:13046534-13046553 None:intergenic 30.0%
! TGTTTATATGGTTAGGGTTT+TGG + chr2_2:13046920-13046939 None:intergenic 30.0%
ATCAGAAGCAAATAAACAAC+TGG - chr2_2:13047104-13047123 Msa0239030:five_prime_UTR 30.0%
! ACAACTGGTTTATCAATCAA+AGG - chr2_2:13047119-13047138 Msa0239030:five_prime_UTR 30.0%
GGTTTATCAATCAAAGGAAA+CGG - chr2_2:13047125-13047144 Msa0239030:five_prime_UTR 30.0%
ACATTATCCATGTAATAGTG+TGG + chr2_2:13047202-13047221 None:intergenic 30.0%
TATTAGACGGTTCTTTATGA+AGG - chr2_2:13047475-13047494 Msa0239030:five_prime_UTR 30.0%
! TCTAGCTAGTGGATAATACA+AGG + chr2_2:13041172-13041191 None:intergenic 35.0%
!!! GAAGTAGTGAAGAGGTTTTT+TGG + chr2_2:13041314-13041333 None:intergenic 35.0%
TACATGAAGAAGTAGTGAAG+AGG + chr2_2:13041322-13041341 None:intergenic 35.0%
! TATTACCCTTTTTGCCTTCT+AGG + chr2_2:13041528-13041547 None:intergenic 35.0%
!! TAAAAAGGAAGTGTTACTGG+TGG - chr2_2:13041546-13041565 Msa0239030:intron 35.0%
!! ACTAAAGGCATCATCATCAT+TGG + chr2_2:13041676-13041695 None:intergenic 35.0%
TGATGAGATGAAGTGACTAA+AGG + chr2_2:13041691-13041710 None:intergenic 35.0%
TTGTTAGTGGAATTAGGGAT+AGG + chr2_2:13041790-13041809 None:intergenic 35.0%
!! AGAGGTGTTGTTATTACAGT+TGG + chr2_2:13041830-13041849 None:intergenic 35.0%
TTCTGTCAAATCCAAGATCA+TGG - chr2_2:13041957-13041976 Msa0239030:intron 35.0%
AGAACTTTCCAAACCCTTAA+AGG - chr2_2:13042463-13042482 Msa0239030:CDS 35.0%
TTCCAAATACCTGATACCAA+TGG - chr2_2:13042868-13042887 Msa0239030:intron 35.0%
GACAAAAACGCATGAGTTAA+GGG + chr2_2:13042896-13042915 None:intergenic 35.0%
AGACAAAAACGCATGAGTTA+AGG + chr2_2:13042897-13042916 None:intergenic 35.0%
! AGGTAGATGGTGATGTATAA+TGG - chr2_2:13042925-13042944 Msa0239030:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr2_2:13043008-13043027 None:intergenic 35.0%
!!! GCCTGATAGTGTTGTTTTTA+TGG - chr2_2:13043263-13043282 Msa0239030:intron 35.0%
CCCATAAAAACAACACTATC+AGG + chr2_2:13043267-13043286 None:intergenic 35.0%
TTTCTGTGACCTCATCAAAA+GGG + chr2_2:13043337-13043356 None:intergenic 35.0%
ATCCAAAATTTGGAGGACTT+CGG - chr2_2:13043429-13043448 Msa0239030:intron 35.0%
CAGAAGAAACCCTAATTCAT+TGG + chr2_2:13043494-13043513 None:intergenic 35.0%
! CTGCATTTTGCATTCCAATT+TGG + chr2_2:13043568-13043587 None:intergenic 35.0%
TATAGGGAGTAGTGTATACA+CGG + chr2_2:13043824-13043843 None:intergenic 35.0%
TATACACTACTCCCTATAGT+TGG - chr2_2:13043826-13043845 Msa0239030:intron 35.0%
! AGCCTTATCACATAATGCAT+TGG - chr2_2:13044191-13044210 Msa0239030:intron 35.0%
! AAACATGACCAAGCTTTTAG+TGG - chr2_2:13044218-13044237 Msa0239030:intron 35.0%
TCAATGATCCACTAAAAGCT+TGG + chr2_2:13044229-13044248 None:intergenic 35.0%
GAAAACTTTGGATCGATATG+TGG + chr2_2:13044304-13044323 None:intergenic 35.0%
!!! TGGTTTTGATTTCTGCATCT+AGG - chr2_2:13044804-13044823 Msa0239030:intron 35.0%
!! AAAGGAGTGTCCATTATTTC+AGG - chr2_2:13044947-13044966 Msa0239030:intron 35.0%
!! AAGGAGTGTCCATTATTTCA+GGG - chr2_2:13044948-13044967 Msa0239030:intron 35.0%
GCATCTAAACCCTGAAATAA+TGG + chr2_2:13044960-13044979 None:intergenic 35.0%
TATTTCAGGGTTTAGATGCA+TGG - chr2_2:13044961-13044980 Msa0239030:intron 35.0%
CTACACATCCATTATTTCCA+AGG + chr2_2:13044989-13045008 None:intergenic 35.0%
! TGATTGATTCACCACATTGA+AGG + chr2_2:13045062-13045081 None:intergenic 35.0%
!! GGACAAATTTTGATACCACA+AGG + chr2_2:13045137-13045156 None:intergenic 35.0%
GCTGAAACTAGCATATATGT+TGG + chr2_2:13045197-13045216 None:intergenic 35.0%
TACTCATCCATATACAACCA+AGG - chr2_2:13045333-13045352 Msa0239030:intron 35.0%
ACTCATCCATATACAACCAA+GGG - chr2_2:13045334-13045353 Msa0239030:intron 35.0%
GTCATATGAATTGCATCCTT+AGG + chr2_2:13045406-13045425 None:intergenic 35.0%
! CTTTTCTTTGAGTGGTGTTT+AGG + chr2_2:13045428-13045447 None:intergenic 35.0%
CTAAACACCACTCAAAGAAA+AGG - chr2_2:13045426-13045445 Msa0239030:intron 35.0%
GGAGTGAAATCAAAATGGTT+AGG + chr2_2:13045558-13045577 None:intergenic 35.0%
AATGTTCTGTTTACGAGGAT+TGG - chr2_2:13045651-13045670 Msa0239030:intron 35.0%
CCAACAACAATAATTGCTAC+CGG + chr2_2:13045796-13045815 None:intergenic 35.0%
! CGGTAGCAATTATTGTTGTT+GGG - chr2_2:13045794-13045813 Msa0239030:intron 35.0%
ATATGATCAGCTTGTAGTGA+AGG - chr2_2:13046016-13046035 Msa0239030:intron 35.0%
!! CAGCTTTTGAGAAAATACAG+TGG - chr2_2:13046130-13046149 Msa0239030:CDS 35.0%
AAAAGGAAAGCTTCCAAAAG+AGG - chr2_2:13046195-13046214 Msa0239030:CDS 35.0%
TTAAAGTGGTGCTTACAGAT+GGG + chr2_2:13046270-13046289 None:intergenic 35.0%
! TTTAAAGTGGTGCTTACAGA+TGG + chr2_2:13046271-13046290 None:intergenic 35.0%
GTGGCAAGAGATTAAGAAAA+AGG + chr2_2:13046303-13046322 None:intergenic 35.0%
!! TTGAAAAATCATGGTGGACT+TGG + chr2_2:13046528-13046547 None:intergenic 35.0%
!! GATTTTGATCCAATGACCTT+TGG + chr2_2:13046755-13046774 None:intergenic 35.0%
TTGGATCAAAATCAGACGAT+TGG - chr2_2:13046762-13046781 Msa0239030:CDS 35.0%
TTGATCACATTATTGACCGT+TGG + chr2_2:13046860-13046879 None:intergenic 35.0%
ATGTAATAGTGTGGATGACT+TGG + chr2_2:13047193-13047212 None:intergenic 35.0%
AAGTCATCCACACTATTACA+TGG - chr2_2:13047192-13047211 Msa0239030:five_prime_UTR 35.0%
! ATGGTGTTAGATAGATCCAT+GGG + chr2_2:13047241-13047260 None:intergenic 35.0%
! ATAAGCTGCTGGTTATTAGA+CGG - chr2_2:13047462-13047481 Msa0239030:five_prime_UTR 35.0%
! ACAGAAGAAGGGTTAGTATG+AGG + chr2_2:13041060-13041079 None:intergenic 40.0%
GAGGTTGAGTTACAGAAGAA+GGG + chr2_2:13041071-13041090 None:intergenic 40.0%
TTTCCAAAGGAAATCTGTGC+AGG - chr2_2:13041269-13041288 Msa0239030:three_prime_UTR 40.0%
!!! GGTTTTTTGGCTTCTACTAC+TGG + chr2_2:13041301-13041320 None:intergenic 40.0%
! TTTTTACCATAAAACCCGGG+CGG - chr2_2:13041417-13041436 Msa0239030:CDS 40.0%
ATCTGACCTAGAAGGCAAAA+AGG - chr2_2:13041519-13041538 Msa0239030:intron 40.0%
TCTGACCTAGAAGGCAAAAA+GGG - chr2_2:13041520-13041539 Msa0239030:intron 40.0%
!! TCAATGGAGGGTAGTTCTAA+TGG - chr2_2:13041589-13041608 Msa0239030:intron 40.0%
!!! TCTTATGTGATGGGTGCTTT+TGG - chr2_2:13041625-13041644 Msa0239030:intron 40.0%
!! CTTTTGGAGAAAACAGTGGT+GGG - chr2_2:13041641-13041660 Msa0239030:intron 40.0%
!! AAAGGCATCATCATCATTGG+AGG + chr2_2:13041673-13041692 None:intergenic 40.0%
TAGTGGAATTAGGGATAGGA+AGG + chr2_2:13041786-13041805 None:intergenic 40.0%
! GAGTGTTTGTGTTGTTGTGA+TGG + chr2_2:13041873-13041892 None:intergenic 40.0%
AACACAAACACTCCTGGTTT+AGG - chr2_2:13041880-13041899 Msa0239030:intron 40.0%
ATGGACAACATCAACAACCA+TGG - chr2_2:13041913-13041932 Msa0239030:intron 40.0%
GGATTTGACAGAAGAAGAAG+AGG + chr2_2:13041950-13041969 None:intergenic 40.0%
AGCCTACATCAACTGTCAAA+AGG - chr2_2:13042008-13042027 Msa0239030:intron 40.0%
!! GACCTTTTGACAGTTGATGT+AGG + chr2_2:13042013-13042032 None:intergenic 40.0%
ACATCAACTGTCAAAAGGTC+AGG - chr2_2:13042013-13042032 Msa0239030:intron 40.0%
CATCAACTGTCAAAAGGTCA+GGG - chr2_2:13042014-13042033 Msa0239030:intron 40.0%
! CATAGCTTCCTTTAAGGGTT+TGG + chr2_2:13042474-13042493 None:intergenic 40.0%
ATGTCTGTGTTTGCAAGAGT+TGG - chr2_2:13042667-13042686 Msa0239030:intron 40.0%
CACCATTGGTATCAGGTATT+TGG + chr2_2:13042873-13042892 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr2_2:13043007-13043026 None:intergenic 40.0%
TGTCAATTAAATTGGGACGG+AGG - chr2_2:13043198-13043217 Msa0239030:intron 40.0%
GTTTCTGTGACCTCATCAAA+AGG + chr2_2:13043338-13043357 None:intergenic 40.0%
CAGAAACTCTCAGATTTCAC+TGG - chr2_2:13043351-13043370 Msa0239030:intron 40.0%
! TTCCGAAGTCCTCCAAATTT+TGG + chr2_2:13043434-13043453 None:intergenic 40.0%
!! AGGAAAGTACTTGAGCTCTT+TGG + chr2_2:13043605-13043624 None:intergenic 40.0%
AAAGAGCTCAAGTACTTTCC+TGG - chr2_2:13043604-13043623 Msa0239030:intron 40.0%
AAGAGCTCAAGTACTTTCCT+GGG - chr2_2:13043605-13043624 Msa0239030:intron 40.0%
TGTAGTATATCATCGTAGGC+TGG - chr2_2:13044368-13044387 Msa0239030:intron 40.0%
CACCCAAAACCTTACAAACT+TGG + chr2_2:13044574-13044593 None:intergenic 40.0%
! TATGCGTTTTTCTTCGGCTT+CGG - chr2_2:13044653-13044672 Msa0239030:intron 40.0%
GATGCAGAAATCAAAACCAG+TGG + chr2_2:13044803-13044822 None:intergenic 40.0%
CAAGGGCAAGCTAATTACAA+GGG - chr2_2:13045351-13045370 Msa0239030:intron 40.0%
AAGGGCAAGCTAATTACAAG+GGG - chr2_2:13045352-13045371 Msa0239030:intron 40.0%
! GCAATAGCCTTTTCTTTGAG+TGG + chr2_2:13045436-13045455 None:intergenic 40.0%
!! GTTACTTGGAAGGTATTGCA+TGG + chr2_2:13045461-13045480 None:intergenic 40.0%
TTGGCATTCAGTTACTTGGA+AGG + chr2_2:13045471-13045490 None:intergenic 40.0%
GAGAGGGATTGTCACTAATT+TGG + chr2_2:13045490-13045509 None:intergenic 40.0%
!! TGGTTAGGATTTTTGGACCA+TGG + chr2_2:13045543-13045562 None:intergenic 40.0%
CACATGAATAGAAGGCAAGT+TGG + chr2_2:13045682-13045701 None:intergenic 40.0%
CCGGTAGCAATTATTGTTGT+TGG - chr2_2:13045793-13045812 Msa0239030:intron 40.0%
TGCAAATCGGATTGAAGAGT+AGG - chr2_2:13045878-13045897 Msa0239030:intron 40.0%
AGCAGAAGACAGGGAATTAA+AGG - chr2_2:13046105-13046124 Msa0239030:CDS 40.0%
GCAGAAGACAGGGAATTAAA+GGG - chr2_2:13046106-13046125 Msa0239030:CDS 40.0%
! AATTGTTGCCTTGCCTCTTT+TGG + chr2_2:13046211-13046230 None:intergenic 40.0%
CAAGGCAACAATTGCTTGAA+TGG - chr2_2:13046218-13046237 Msa0239030:CDS 40.0%
CATAGGCAATCACCTAGTTA+CGG - chr2_2:13046357-13046376 Msa0239030:intron 40.0%
TGACAACTCATGTTTCGACT+TGG - chr2_2:13046405-13046424 Msa0239030:intron 40.0%
TAGCGTGACTTGAAAAACCA+TGG + chr2_2:13046574-13046593 None:intergenic 40.0%
ACCTTTCGATCTTGATCCAA+CGG - chr2_2:13046841-13046860 Msa0239030:CDS 40.0%
ATAACAGGAATCACAGAAGC+TGG - chr2_2:13047057-13047076 Msa0239030:five_prime_UTR 40.0%
TCTCAGCAATTCATATCCCA+TGG - chr2_2:13047222-13047241 Msa0239030:five_prime_UTR 40.0%
! CATGGTGTTAGATAGATCCA+TGG + chr2_2:13047242-13047261 None:intergenic 40.0%
CCATGCTCTAGTTATTACCT+CGG - chr2_2:13047257-13047276 Msa0239030:five_prime_UTR 40.0%
! GCTTGTGGTGTTAAAAGTCT+TGG - chr2_2:13047285-13047304 Msa0239030:five_prime_UTR 40.0%
TAACCCTACGTTACGTTGTA+AGG - chr2_2:13047315-13047334 Msa0239030:five_prime_UTR 40.0%
ATGCCTTACAACGTAACGTA+GGG + chr2_2:13047321-13047340 None:intergenic 40.0%
AATGCCTTACAACGTAACGT+AGG + chr2_2:13047322-13047341 None:intergenic 40.0%
! GAAGGGTTAGTATGAGGCAT+TGG + chr2_2:13041054-13041073 None:intergenic 45.0%
GGAGGTTGAGTTACAGAAGA+AGG + chr2_2:13041072-13041091 None:intergenic 45.0%
TAGAGAGAGAGAGAGAGAGA+TGG + chr2_2:13041093-13041112 None:intergenic 45.0%
AAGCCTGCACAGATTTCCTT+TGG + chr2_2:13041275-13041294 None:intergenic 45.0%
! TTTTACCATAAAACCCGGGC+GGG - chr2_2:13041418-13041437 Msa0239030:CDS 45.0%
!! GGTGCTTTTGGAGAAAACAG+TGG - chr2_2:13041637-13041656 Msa0239030:intron 45.0%
!! GCTTTTGGAGAAAACAGTGG+TGG - chr2_2:13041640-13041659 Msa0239030:intron 45.0%
CACAACAACACAAACACTCC+TGG - chr2_2:13041874-13041893 Msa0239030:intron 45.0%
AAGAGGAAGAAGAGCTTCCA+TGG + chr2_2:13041933-13041952 None:intergenic 45.0%
TGATGTAGGCTTCCAAGAGA+CGG + chr2_2:13041999-13042018 None:intergenic 45.0%
ATGTGCAACTGCAGTGAGAA+TGG - chr2_2:13042346-13042365 Msa0239030:CDS 45.0%
TGTGCAACTGCAGTGAGAAT+GGG - chr2_2:13042347-13042366 Msa0239030:CDS 45.0%
! GCAGTTGGATCAGGTTGTTT+AGG - chr2_2:13042377-13042396 Msa0239030:CDS 45.0%
!! TCCAGCTCTAGATCAGTTCA+TGG - chr2_2:13042406-13042425 Msa0239030:CDS 45.0%
! TCCATGAACTGATCTAGAGC+TGG + chr2_2:13042410-13042429 None:intergenic 45.0%
CTTGCAAACACAGACATGCA+TGG + chr2_2:13042664-13042683 None:intergenic 45.0%
!! TTAAGGGCACCATTGGTATC+AGG + chr2_2:13042880-13042899 None:intergenic 45.0%
!! CATTGGTGTTGGTGCATTGA+AGG - chr2_2:13042961-13042980 Msa0239030:intron 45.0%
! ACAGCTTGGTGGGTGAATTT+AGG - chr2_2:13043453-13043472 Msa0239030:intron 45.0%
ACCTCGCAATTACCACTTCT+GGG + chr2_2:13043525-13043544 None:intergenic 45.0%
TACCTCGCAATTACCACTTC+TGG + chr2_2:13043526-13043545 None:intergenic 45.0%
AGAGCTCAAGTACTTTCCTG+GGG - chr2_2:13043606-13043625 Msa0239030:intron 45.0%
TTCTGCATCTAGGCTTGACT+AGG - chr2_2:13044814-13044833 Msa0239030:intron 45.0%
TCTGCATCTAGGCTTGACTA+GGG - chr2_2:13044815-13044834 Msa0239030:intron 45.0%
ACTAGGGTCTCTTGTGTGTA+TGG - chr2_2:13044831-13044850 Msa0239030:intron 45.0%
TGGTGAAGTATACCTTCACG+AGG - chr2_2:13044884-13044903 Msa0239030:intron 45.0%
GCATGGAGCCTTGGAAATAA+TGG - chr2_2:13044978-13044997 Msa0239030:intron 45.0%
GTGTAGATAATGTGCCTTCC+CGG - chr2_2:13045003-13045022 Msa0239030:intron 45.0%
AGGTGCATAGGATAAAGAGC+CGG + chr2_2:13045025-13045044 None:intergenic 45.0%
AGCTTGCCCTTGGTTGTATA+TGG + chr2_2:13045343-13045362 None:intergenic 45.0%
!! CCTTGTAATTAGCTTGCCCT+TGG + chr2_2:13045353-13045372 None:intergenic 45.0%
CCAAGGGCAAGCTAATTACA+AGG - chr2_2:13045350-13045369 Msa0239030:intron 45.0%
!! ACTTGGAAGGTATTGCATGG+AGG + chr2_2:13045458-13045477 None:intergenic 45.0%
! TTTGTATATATGGGGGCGCA+AGG + chr2_2:13045517-13045536 None:intergenic 45.0%
TCGGATTGAAGAGTAGGTCT+TGG - chr2_2:13045884-13045903 Msa0239030:intron 45.0%
CGGATTGAAGAGTAGGTCTT+GGG - chr2_2:13045885-13045904 Msa0239030:intron 45.0%
TGATCAGCTTGTAGTGAAGG+TGG - chr2_2:13046019-13046038 Msa0239030:intron 45.0%
CTTGTAGTGAAGGTGGAGAT+AGG - chr2_2:13046026-13046045 Msa0239030:CDS 45.0%
AGTGAAGGTGGAGATAGGAA+TGG - chr2_2:13046031-13046050 Msa0239030:CDS 45.0%
TAGATCCTCAAGCAGAAGAC+AGG - chr2_2:13046095-13046114 Msa0239030:CDS 45.0%
AGATCCTCAAGCAGAAGACA+GGG - chr2_2:13046096-13046115 Msa0239030:CDS 45.0%
AATTCCCTGTCTTCTGCTTG+AGG + chr2_2:13046103-13046122 None:intergenic 45.0%
GAAAGCTTCCAAAAGAGGCA+AGG - chr2_2:13046200-13046219 Msa0239030:CDS 45.0%
GGCAACAATTGCTTGAATGG+TGG - chr2_2:13046221-13046240 Msa0239030:CDS 45.0%
!! GTTTCGACTTGGTGCATGTT+TGG - chr2_2:13046416-13046435 Msa0239030:intron 45.0%
AAAGTCACGTTGAACCACCA+TGG - chr2_2:13046554-13046573 Msa0239030:CDS 45.0%
CGTGACTTGAAAAACCATGG+TGG + chr2_2:13046571-13046590 None:intergenic 45.0%
TGATCCAATGACCTTTGGTG+TGG + chr2_2:13046750-13046769 None:intergenic 45.0%
ACCGTTGGATCAAGATCGAA+AGG + chr2_2:13046845-13046864 None:intergenic 45.0%
TCAATCAAAGGAAACGGCAC+TGG - chr2_2:13047131-13047150 Msa0239030:five_prime_UTR 45.0%
ACAAACTGCATGTCCTCTGA+AGG + chr2_2:13047160-13047179 None:intergenic 45.0%
TTCAGAGGACATGCAGTTTG+TGG - chr2_2:13047159-13047178 Msa0239030:five_prime_UTR 45.0%
CCGAGGTAATAACTAGAGCA+TGG + chr2_2:13047260-13047279 None:intergenic 45.0%
ATAGCGAGGAAATAAGCTGC+TGG - chr2_2:13047451-13047470 Msa0239030:five_prime_UTR 45.0%
AGAGAGAGAGAGAGAGATGG+AGG + chr2_2:13041090-13041109 None:intergenic 50.0%
AGAAAGCAGTAGAGTGCACG+CGG + chr2_2:13041132-13041151 None:intergenic 50.0%
CTCTCTGTCTCTCTAGCTAG+TGG + chr2_2:13041183-13041202 None:intergenic 50.0%
GTGAGGATGAGCCATGATCT+TGG + chr2_2:13041971-13041990 None:intergenic 50.0%
TCCTCACTATCACCGTCTCT+TGG - chr2_2:13041984-13042003 Msa0239030:intron 50.0%
! TCCAAGAGACGGTGATAGTG+AGG + chr2_2:13041988-13042007 None:intergenic 50.0%
AACCTTGCCACCACTTCACT+TGG + chr2_2:13042317-13042336 None:intergenic 50.0%
AGAATGGGTGGAGATGCAGT+TGG - chr2_2:13042362-13042381 Msa0239030:CDS 50.0%
!! GCATGAGTTAAGGGCACCAT+TGG + chr2_2:13042887-13042906 None:intergenic 50.0%
CTTAACTACTCCCTCTGTCC+CGG - chr2_2:13042986-13043005 Msa0239030:intron 50.0%
GTCAGTTATTCCGGGACAGA+GGG + chr2_2:13042999-13043018 None:intergenic 50.0%
TCTGCACTTGTTCCCAGAAG+TGG - chr2_2:13043510-13043529 Msa0239030:intron 50.0%
TCCCAGAAGTGGTAATTGCG+AGG - chr2_2:13043521-13043540 Msa0239030:intron 50.0%
TCAACTTTGCACTTGTCCCC+AGG + chr2_2:13043625-13043644 None:intergenic 50.0%
GGTTTAGATGCATGGAGCCT+TGG - chr2_2:13044969-13044988 Msa0239030:intron 50.0%
CATAGGATAAAGAGCCGGGA+AGG + chr2_2:13045020-13045039 None:intergenic 50.0%
GGTGCATAGGATAAAGAGCC+GGG + chr2_2:13045024-13045043 None:intergenic 50.0%
GGTGGAGCAGACATTACAAG+TGG - chr2_2:13046239-13046258 Msa0239030:CDS 50.0%
GTGGTGCTTACAGATGGGTA+AGG + chr2_2:13046265-13046284 None:intergenic 50.0%
! TTTGGTGTGGTGTGACTGCA+CGG + chr2_2:13046737-13046756 None:intergenic 50.0%
CACACCACACCAAAGGTCAT+TGG - chr2_2:13046743-13046762 Msa0239030:CDS 50.0%
GGACATGCAGTTTGTGGTGA+TGG - chr2_2:13047165-13047184 Msa0239030:five_prime_UTR 50.0%
!! ATTACCTCGGTGCTTGCTTG+TGG - chr2_2:13047270-13047289 Msa0239030:five_prime_UTR 50.0%
AAAGCAGTAGAGTGCACGCG+GGG + chr2_2:13041130-13041149 None:intergenic 55.0%
GAAAGCAGTAGAGTGCACGC+GGG + chr2_2:13041131-13041150 None:intergenic 55.0%
! GGTTGGAGCACCAAGTGAAG+TGG - chr2_2:13042304-13042323 Msa0239030:intron 55.0%
! TGGAGCACCAAGTGAAGTGG+TGG - chr2_2:13042307-13042326 Msa0239030:intron 55.0%
CACCAAGTGAAGTGGTGGCA+AGG - chr2_2:13042312-13042331 Msa0239030:CDS 55.0%
GCAACTGCAGTGAGAATGGG+TGG - chr2_2:13042350-13042369 Msa0239030:CDS 55.0%
GGTGGAGATGCAGTTGGATC+AGG - chr2_2:13042368-13042387 Msa0239030:CDS 55.0%
GGTCAGTTATTCCGGGACAG+AGG + chr2_2:13043000-13043019 None:intergenic 55.0%
TGGAGGACTTCGGAACAGCT+TGG - chr2_2:13043439-13043458 Msa0239030:intron 55.0%
AGGACTTCGGAACAGCTTGG+TGG - chr2_2:13043442-13043461 Msa0239030:intron 55.0%
GGACTTCGGAACAGCTTGGT+GGG - chr2_2:13043443-13043462 Msa0239030:intron 55.0%
GTGCAGTCACACCACACCAA+AGG - chr2_2:13046736-13046755 Msa0239030:CDS 55.0%
!! CTGGCTCTAGCAGAGTCAAC+AGG - chr2_2:13047076-13047095 Msa0239030:five_prime_UTR 55.0%
! AACACCACAAGCAAGCACCG+AGG + chr2_2:13047277-13047296 None:intergenic 55.0%
! GGGGGCGCAAGGAAAAGAGA+GGG + chr2_2:13045506-13045525 None:intergenic 60.0%
! TGGGGGCGCAAGGAAAAGAG+AGG + chr2_2:13045507-13045526 None:intergenic 60.0%
! ACGGCACTGGAAGCCTTCAG+AGG - chr2_2:13047144-13047163 Msa0239030:five_prime_UTR 60.0%
! GGTCACCCGCCCGGGTTTTA+TGG + chr2_2:13041426-13041445 None:intergenic 65.0%
TCACACAAGGGTCACCCGCC+CGG + chr2_2:13041435-13041454 None:intergenic 65.0%
CACACAAGGGTCACCCGCCC+GGG + chr2_2:13041434-13041453 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 13041049 13047534 13041049 ID=Msa0239030;Name=Msa0239030
chr2_2 mRNA 13041049 13047534 13041049 ID=Msa0239030-mRNA-1;Parent=Msa0239030;Name=Msa0239030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=543|1|1|1|1|1|4|267|381
chr2_2 exon 13041049 13041519 13041049 ID=Msa0239030-mRNA-1:exon:5518;Parent=Msa0239030-mRNA-1
chr2_2 exon 13042310 13042557 13042310 ID=Msa0239030-mRNA-1:exon:5517;Parent=Msa0239030-mRNA-1
chr2_2 exon 13046023 13046278 13046023 ID=Msa0239030-mRNA-1:exon:5516;Parent=Msa0239030-mRNA-1
chr2_2 exon 13046554 13047534 13046554 ID=Msa0239030-mRNA-1:exon:5515;Parent=Msa0239030-mRNA-1
chr2_2 five_prime_UTR 13046992 13047534 13046992 ID=Msa0239030-mRNA-1:five_prime_utr;Parent=Msa0239030-mRNA-1
chr2_2 CDS 13046554 13046991 13046554 ID=Msa0239030-mRNA-1:cds;Parent=Msa0239030-mRNA-1
chr2_2 CDS 13046023 13046278 13046023 ID=Msa0239030-mRNA-1:cds;Parent=Msa0239030-mRNA-1
chr2_2 CDS 13042310 13042557 13042310 ID=Msa0239030-mRNA-1:cds;Parent=Msa0239030-mRNA-1
chr2_2 CDS 13041316 13041519 13041316 ID=Msa0239030-mRNA-1:cds;Parent=Msa0239030-mRNA-1
chr2_2 three_prime_UTR 13041049 13041315 13041049 ID=Msa0239030-mRNA-1:three_prime_utr;Parent=Msa0239030-mRNA-1
Gene Sequence

>Msa0239030

ATGGAGGGTAGTTCTAATGGAAGTTCTTCTTATTCTTATGTGATGGGTGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCTCCAATGATGATGATGCCTTTAGTCACTTCATCTCATCATAATGCTCATCATCCAATAAATTCCAATAACAACAACAACAATACTAATGCAAACAACATAAGCGGTCTTTTCCTTCCTATCCCTAATTCCACTAACAATAATAACAATCACTACACCAACTGTAATAACAACACCTCTTCTATCATGCTTCAAAATAACCATCACAACAACACAAACACTCCTGGTTTAGGTTACTATTTCATGGACAACATCAACAACCATGGAAGCTCTTCTTCCTCTTCTTCTTCTGTCAAATCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCCTACATCAACTGTCAAAAGGTTGGAGCACCAAGTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCAACTGCAGTGAGAATGGGTGGAGATGCAGTTGGATCAGGTTGTTTAGGTGAAGATCCAGCTCTAGATCAGTTCATGGAAGCTTACTGTGAGATGCTTATCAAGTATGAGCAAGAACTTTCCAAACCCTTAAAGGAAGCTATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTCAAAAATCTTACAGTTTCTTCTTCTTCAGATAATATTGCTTGTAGTGAAGGTGGAGATAGGAATGGATCATCTGAAGAAGATCATGTTGATATGTACAACAACATGATAGATCCTCAAGCAGAAGACAGGGAATTAAAGGGTCAGCTTTTGAGAAAATACAGTGGATACTTAGGCAGTCTGAAGCAAGAGTTTATGAAGAAAAGGAAAAAAGGAAAGCTTCCAAAAGAGGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAGTGGCCTTACCCATCTGAATCACAGAAGCTGGCTCTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGTCATCCACACTATTACATGGATAATGTTCTCAGCAATTCATATCCCATGGATCTATCTAACACCATGCTCTAG
Protein sequence

>Msa0239030

MEGSSNGSSSYSYVMGAFGENSGGLCPPMMMMPLVTSSHHNAHHPINSNNNNNNTNANNISGLFLPIPNSTNNNNNHYTNCNNNTSSIMLQNNHHNNTNTPGLGYYFMDNINNHGSSSSSSSSVKSKIMAHPHYHRLLEAYINCQKVGAPSEVVARLEEACATAVRMGGDAVGSGCLGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIACSEGGDRNGSSEEDHVDMYNNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLSNSYPMDLSNTML*