AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0239610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239610 MtrunA17_Chr2g0290501 91.892 333 27 0 1 333 1 333 0.0 647
Msa0239610 MtrunA17_Chr4g0076351 74.101 278 65 5 59 333 4 277 6.61e-152 427
Msa0239610 MtrunA17_Chr3g0102431 59.041 271 111 0 62 332 16 286 1.21e-116 338
Msa0239610 MtrunA17_Chr8g0383231 59.449 254 100 2 72 324 19 270 4.28e-111 324
Msa0239610 MtrunA17_Chr3g0120821 52.756 254 118 1 71 324 80 331 1.78e-104 310
Msa0239610 MtrunA17_Chr4g0055811 48.201 278 143 1 56 332 76 353 1.78e-94 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239610 AT5G47650.5 61.450 262 99 1 71 332 19 278 8.26e-121 349
Msa0239610 AT5G47650.3 61.450 262 99 1 71 332 19 278 8.26e-121 349
Msa0239610 AT5G47650.1 61.450 262 99 1 71 332 19 278 8.26e-121 349
Msa0239610 AT5G47650.2 61.450 262 99 1 71 332 66 325 5.43e-120 348
Msa0239610 AT5G47650.4 61.450 262 99 1 71 332 65 324 7.61e-120 348
Msa0239610 AT4G25434.10 57.255 255 109 0 70 324 18 272 3.42e-106 312
Msa0239610 AT4G25434.1 55.686 255 108 1 70 324 18 267 1.30e-100 298
Msa0239610 AT4G25434.8 52.128 282 108 1 70 324 18 299 1.81e-100 298
Msa0239610 AT4G12720.2 51.119 268 128 3 65 330 4 270 4.24e-96 286
Msa0239610 AT4G12720.3 51.119 268 128 3 65 330 4 270 4.24e-96 286
Msa0239610 AT4G12720.1 51.119 268 128 3 65 330 4 270 4.24e-96 286
Msa0239610 AT4G25434.2 50.709 282 107 2 70 324 18 294 3.92e-95 285
Msa0239610 AT5G47240.1 47.241 290 147 3 37 324 65 350 5.70e-90 274
Msa0239610 AT4G25434.7 62.312 199 75 0 70 268 18 216 9.06e-89 265
Msa0239610 AT4G12720.4 44.481 308 128 4 65 330 4 310 3.60e-88 268
Msa0239610 AT2G04450.1 48.679 265 132 4 63 324 2 265 2.10e-86 262
Msa0239610 AT5G47240.2 42.947 319 147 4 37 324 65 379 4.24e-84 259
Msa0239610 AT4G25434.6 55.310 226 74 1 70 268 18 243 1.66e-83 253
Msa0239610 AT4G25434.9 60.302 199 74 1 70 268 18 211 2.08e-83 251
Msa0239610 AT4G25434.3 57.949 195 82 0 130 324 33 227 4.20e-81 246
Msa0239610 AT4G25434.5 57.949 195 82 0 130 324 33 227 4.20e-81 246
Msa0239610 AT2G04430.2 45.353 269 140 4 68 331 7 273 6.20e-81 248
Msa0239610 AT2G04430.1 45.353 269 140 4 68 331 26 292 1.39e-80 248
Msa0239610 AT4G12720.5 55.941 202 87 2 65 264 4 205 1.07e-78 239
Msa0239610 AT4G25434.4 55.897 195 81 1 130 324 33 222 1.58e-75 232
Msa0239610 AT4G25434.12 59.763 169 68 0 70 238 18 186 2.44e-70 219
Msa0239610 AT4G25434.13 50.242 207 76 1 145 324 1 207 8.48e-67 209
Msa0239610 AT4G25434.11 52.041 196 67 1 70 238 18 213 7.81e-65 206
Msa0239610 AT4G12720.6 50.000 188 91 3 145 330 1 187 4.13e-61 194
Msa0239610 AT2G04440.1 47.260 146 75 1 63 206 2 147 2.37e-44 151

Find 84 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATACAAGCATTAAATATTT+TGG 0.135728 2_2:+14084745 None:intergenic
GGAAAATAGTGGACTATTTC+AGG 0.142281 2_2:-14084242 Msa0239610:CDS
GAGAAGATAATTGAGAATTT+TGG 0.171118 2_2:+14085736 None:intergenic
GGAATAGTATTTGGACTTTC+AGG 0.173194 2_2:+14084715 None:intergenic
TGCAAGATAACGAGAATTAT+TGG 0.203640 2_2:+14085708 None:intergenic
GCATTTGCAGGAATAGTATT+TGG 0.212021 2_2:+14084706 None:intergenic
AATATTTAATGCTTGTATAT+TGG 0.228723 2_2:-14084741 Msa0239610:CDS
ACTTCAAAATATCAGTCTTT+TGG 0.268444 2_2:+14082851 None:intergenic
AAGATGGATGGGCGATATTC+TGG 0.271028 2_2:-14082805 Msa0239610:CDS
ATCTTAGGTACTAGTTGTTC+AGG 0.284024 2_2:-14084263 Msa0239610:intron
TTCTTGAAGTATTAGCATTC+AGG 0.305070 2_2:-14083927 Msa0239610:intron
TATTTCAGGGAACTGGAGTT+TGG 0.329206 2_2:-14084228 Msa0239610:CDS
CGATATTTGTTTGGCTAAGA+TGG 0.346862 2_2:-14082821 Msa0239610:CDS
TGCAGGGCAAGAAGGGAGTT+TGG 0.356585 2_2:-14084964 Msa0239610:intron
TGGAATTGTATTTATTTGAA+TGG 0.374721 2_2:+14085841 None:intergenic
ACCCTGTGTGTGGCATTTGC+AGG 0.375917 2_2:+14084694 None:intergenic
GTACATGAACGATATTTGTT+TGG 0.379153 2_2:-14082830 Msa0239610:CDS
CAAAGGTTAAACAGCTAGAT+AGG 0.395655 2_2:-14082681 Msa0239610:three_prime_UTR
AAGTTTGATAATGTAGATAC+TGG 0.404746 2_2:+14082775 None:intergenic
AGTGGACTATTTCAGGGAAC+TGG 0.415432 2_2:-14084235 Msa0239610:CDS
AGTGCAGAGGTCAGAGATAG+AGG 0.417005 2_2:-14083543 Msa0239610:CDS
CTATCTCTGACCTCTGCACT+TGG 0.417708 2_2:+14083546 None:intergenic
AATGACAAAGCCAGTACTAA+TGG 0.418928 2_2:+14082576 None:intergenic
TATTCTTTATGTGTATGTTA+CGG 0.420564 2_2:-14083586 Msa0239610:CDS
CTTCAGCAAGACCGACTAGA+TGG 0.444644 2_2:+14084927 None:intergenic
CATTGATTTACCATTAGTAC+TGG 0.447908 2_2:-14082586 Msa0239610:three_prime_UTR
CAAATTTAGTTTGTTAAACA+TGG 0.453432 2_2:-14082531 Msa0239610:three_prime_UTR
TCGGTTGACATGCATCGAAT+AGG 0.458746 2_2:+14085469 None:intergenic
GGAATTGTATTTATTTGAAT+GGG 0.459796 2_2:+14085842 None:intergenic
ATTAAAACACCCACTTCAAA+AGG 0.462920 2_2:-14085640 Msa0239610:intron
ATTCATTAAGTCAACAATGC+TGG 0.463994 2_2:-14082627 Msa0239610:three_prime_UTR
CACTTGGATCTCAGACGAAA+GGG 0.464839 2_2:+14083562 None:intergenic
ACATCGACTGATGATAAGTA+TGG 0.467374 2_2:-14085412 Msa0239610:CDS
TGTGGAGCTTGATCAGCCTA+TGG 0.468731 2_2:-14085380 Msa0239610:CDS
CCCTACCGGAGTTGTTGATC+AGG 0.470434 2_2:-14084200 Msa0239610:intron
CAATAGTGTTACCTTAACTA+AGG 0.470543 2_2:+14084904 None:intergenic
TGATTATAAAATAATATTGA+AGG 0.471037 2_2:+14082377 None:intergenic
ATTTGTTTGGCTAAGATGGA+TGG 0.489246 2_2:-14082817 Msa0239610:CDS
GTCAGAGATAGAGGGTGCAC+AGG 0.494835 2_2:-14083534 Msa0239610:intron
TTGAACTTGATCTTCTGCCT+CGG 0.495752 2_2:+14085450 None:intergenic
TAAATCTGACTTCTCAAAGA+AGG 0.503504 2_2:+14083607 None:intergenic
GAAAATAGTGGACTATTTCA+GGG 0.507425 2_2:-14084241 Msa0239610:CDS
AATGAAAGTATTGAAGTTGA+AGG 0.508727 2_2:+14085795 None:intergenic
CTAGTTGTTCAGGAAAATAG+TGG 0.509297 2_2:-14084253 Msa0239610:CDS
TATTATATGTACTTGAATGC+TGG 0.510440 2_2:-14082739 Msa0239610:CDS
GTTGTCTTGCAGGGCAAGAA+GGG 0.510569 2_2:-14084971 Msa0239610:intron
ACTGCAGTGGATGCCATTTG+TGG 0.515009 2_2:-14082896 Msa0239610:intron
GATTATTTGAATAAACAAGC+TGG 0.515628 2_2:-14082451 Msa0239610:three_prime_UTR
TCTTGCTGAAGCCTTAGTTA+AGG 0.518721 2_2:-14084915 Msa0239610:intron
TGTTGTCTTGCAGGGCAAGA+AGG 0.521293 2_2:-14084972 Msa0239610:intron
ATTGCATTCAAACAAGGAAG+TGG 0.534259 2_2:+14085896 None:intergenic
AGAGAGGTCAAAGAAGAGAC+AGG 0.538041 2_2:-14084062 Msa0239610:CDS
TGAGACGCGTATTCCACAAA+TGG 0.538269 2_2:+14082883 None:intergenic
GCCACACACAGGGTTGGCAT+TGG 0.540943 2_2:-14084685 Msa0239610:CDS
TTTGTTTGGCTAAGATGGAT+GGG 0.543258 2_2:-14082816 Msa0239610:CDS
TGAATGCTGGAGCATTGAAA+AGG 0.556559 2_2:-14082726 Msa0239610:CDS
GATTATAAAATAATATTGAA+GGG 0.563443 2_2:+14082378 None:intergenic
AACAATCAATAAAGTATACA+TGG 0.564596 2_2:-14082494 Msa0239610:three_prime_UTR
CAAACAAGGAAGTGGAACAT+TGG 0.574609 2_2:+14085904 None:intergenic
GCACTTGGATCTCAGACGAA+AGG 0.574989 2_2:+14083561 None:intergenic
AAATTACCTATCCATCTAGT+CGG 0.581467 2_2:-14084938 Msa0239610:CDS
GCAAGACCGACTAGATGGAT+AGG 0.593880 2_2:+14084932 None:intergenic
TTATATCTTCATGTAGAACA+AGG 0.595638 2_2:-14085669 Msa0239610:CDS
GTGCAGAGGTCAGAGATAGA+GGG 0.598275 2_2:-14083542 Msa0239610:CDS
TTCCTGCAAATGCCACACAC+AGG 0.601163 2_2:-14084696 Msa0239610:CDS
TAAGTATGGCGGCGTTATTG+TGG 0.606216 2_2:-14085398 Msa0239610:CDS
AAGTAGATTGCATTCAAACA+AGG 0.608734 2_2:+14085890 None:intergenic
CCTGATCAACAACTCCGGTA+GGG 0.610054 2_2:+14084200 None:intergenic
GCAAATGCCACACACAGGGT+TGG 0.610645 2_2:-14084691 Msa0239610:CDS
GGAGTTTGGAAATTCCCTAC+CGG 0.612649 2_2:-14084214 Msa0239610:CDS
ACCTGATCAACAACTCCGGT+AGG 0.615010 2_2:+14084199 None:intergenic
TCCTGCAAATGCCACACACA+GGG 0.616524 2_2:-14084695 Msa0239610:CDS
AGAAGATATTTGCGTAGCAG+CGG 0.617995 2_2:-14084087 Msa0239610:CDS
ACGAATGTAGTCGAATCCAT+AGG 0.621160 2_2:+14085364 None:intergenic
TTGCGTAGCAGCGGTAAGAG+AGG 0.623662 2_2:-14084078 Msa0239610:CDS
CAACAATGCTGGTCTTGATG+AGG 0.636828 2_2:-14082616 Msa0239610:three_prime_UTR
ACTTGGATCTCAGACGAAAG+GGG 0.640184 2_2:+14083563 None:intergenic
AGGCAGAAGATCAAGTTCAA+CGG 0.651683 2_2:-14085447 Msa0239610:CDS
CGTCTGAGATCCAAGTGCAG+AGG 0.669999 2_2:-14083556 Msa0239610:CDS
ATTTACCTGATCAACAACTC+CGG 0.684036 2_2:+14084195 None:intergenic
ACCAATGCCAACCCTGTGTG+TGG 0.684168 2_2:+14084684 None:intergenic
TATTCGATGCATGTCAACCG+AGG 0.685957 2_2:-14085467 Msa0239610:CDS
TAAGATTGGAGTGACAAACA+CGG 0.706518 2_2:-14085494 Msa0239610:CDS
TCGACTGATGATAAGTATGG+CGG 0.725158 2_2:-14085409 Msa0239610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATATTAGTAAAAAAAAAA+TGG + chr2_2:14084470-14084489 None:intergenic 10.0%
!! GATTATAAAATAATATTGAA+GGG + chr2_2:14085895-14085914 None:intergenic 10.0%
!! TGATTATAAAATAATATTGA+AGG + chr2_2:14085896-14085915 None:intergenic 10.0%
!!! TATACAAGCATTAAATATTT+TGG + chr2_2:14083528-14083547 None:intergenic 15.0%
!! AATATTTAATGCTTGTATAT+TGG - chr2_2:14083529-14083548 Msa0239610:intron 15.0%
!!! ACACTTTTTTCTATAAATAA+AGG + chr2_2:14083860-14083879 None:intergenic 15.0%
!!! TTTAAAATGTTCAATACTTA+TGG - chr2_2:14084806-14084825 Msa0239610:intron 15.0%
!! GGAATTGTATTTATTTGAAT+GGG + chr2_2:14082431-14082450 None:intergenic 20.0%
!! TGGAATTGTATTTATTTGAA+TGG + chr2_2:14082432-14082451 None:intergenic 20.0%
!!! GTTTTATGATGATTATGTTT+TGG - chr2_2:14082669-14082688 Msa0239610:three_prime_UTR 20.0%
!! ACAATTGAGTTATTTATGTT+TGG - chr2_2:14083179-14083198 Msa0239610:intron 20.0%
!! ATTGCTTACCATATTAATAA+TGG - chr2_2:14083385-14083404 Msa0239610:intron 20.0%
!! TTGTTTAGTATTCAATAACA+AGG + chr2_2:14083645-14083664 None:intergenic 20.0%
!!! TTTTTCTATAAATAAAGGAG+AGG + chr2_2:14083855-14083874 None:intergenic 20.0%
!! ATATCATCATATACAAAAAC+AGG + chr2_2:14084122-14084141 None:intergenic 20.0%
!!! AAGTTCTAATGATTGAAAAA+GGG - chr2_2:14084399-14084418 Msa0239610:intron 20.0%
!! TTTACTAATATCATTGTGTA+TGG - chr2_2:14084477-14084496 Msa0239610:intron 20.0%
!! TTACTAATATCATTGTGTAT+GGG - chr2_2:14084478-14084497 Msa0239610:intron 20.0%
!! TTTATCAGATATTCATATGA+AGG + chr2_2:14084626-14084645 None:intergenic 20.0%
!! TATTCTTTATGTGTATGTTA+CGG - chr2_2:14084684-14084703 Msa0239610:CDS 20.0%
!!! ATTTAAGATAGACAATGATA+CGG + chr2_2:14084913-14084932 None:intergenic 20.0%
!! TCTATCTTAAATCCATTATT+GGG - chr2_2:14084921-14084940 Msa0239610:CDS 20.0%
!!! ATGATATCATTTTAGGTTTT+AGG + chr2_2:14085095-14085114 None:intergenic 20.0%
!!! TAATGCTATGATATCATTTT+AGG + chr2_2:14085102-14085121 None:intergenic 20.0%
!! AACAACATTGAAAAATGAAA+AGG + chr2_2:14085283-14085302 None:intergenic 20.0%
!!! CAAATTTAGTTTGTTAAACA+TGG - chr2_2:14085739-14085758 Msa0239610:CDS 20.0%
!! AACAATCAATAAAGTATACA+TGG - chr2_2:14085776-14085795 Msa0239610:five_prime_UTR 20.0%
! AAAAATTGAATGAATGAGGT+TGG + chr2_2:14082452-14082471 None:intergenic 25.0%
! GTTGAAAAATTGAATGAATG+AGG + chr2_2:14082456-14082475 None:intergenic 25.0%
!!! AATGAAAGTATTGAAGTTGA+AGG + chr2_2:14082478-14082497 None:intergenic 25.0%
!! GAGAAGATAATTGAGAATTT+TGG + chr2_2:14082537-14082556 None:intergenic 25.0%
! TTATATCTTCATGTAGAACA+AGG - chr2_2:14082601-14082620 Msa0239610:three_prime_UTR 25.0%
!! TTTTCCTTACTAGTTAAGAT+TGG - chr2_2:14082762-14082781 Msa0239610:CDS 25.0%
! TGAAAAATGCATGATGAAAT+AGG - chr2_2:14083043-14083062 Msa0239610:intron 25.0%
! TTGAGTTATTTATGTTTGGA+TGG - chr2_2:14083183-14083202 Msa0239610:intron 25.0%
!!! ATGGTTTTACTCTAAATGTT+TGG - chr2_2:14083202-14083221 Msa0239610:intron 25.0%
!!! ATCTGTCACGAATTTTTTAT+TGG - chr2_2:14083261-14083280 Msa0239610:intron 25.0%
! CAACAGAACCATTATTAATA+TGG + chr2_2:14083396-14083415 None:intergenic 25.0%
! GAAGTTTGGTTAATGAAAAT+TGG - chr2_2:14083417-14083436 Msa0239610:intron 25.0%
! AAATGCATAAAATTGATGCA+TGG + chr2_2:14083459-14083478 None:intergenic 25.0%
! TAATCAAGCTTGTAGTTAAT+TGG - chr2_2:14083670-14083689 Msa0239610:intron 25.0%
!! AATGATAATGTCGTGTAAAT+TGG - chr2_2:14083751-14083770 Msa0239610:intron 25.0%
!! ATGATAATGTCGTGTAAATT+GGG - chr2_2:14083752-14083771 Msa0239610:intron 25.0%
!!! TTATAGAAAAAAGTGTCGAA+TGG - chr2_2:14083864-14083883 Msa0239610:intron 25.0%
! GTTCATTATCTGAATTTACA+CGG - chr2_2:14083943-14083962 Msa0239610:CDS 25.0%
! CTACTTATTTAACCAATACA+GGG - chr2_2:14084160-14084179 Msa0239610:intron 25.0%
!!! CTTGGTTCTTTCAATTTTAT+AGG - chr2_2:14084308-14084327 Msa0239610:intron 25.0%
!! GAAGTTCTAATGATTGAAAA+AGG - chr2_2:14084398-14084417 Msa0239610:intron 25.0%
!! AGTTCTAATGATTGAAAAAG+GGG - chr2_2:14084400-14084419 Msa0239610:intron 25.0%
!! GGAAACTTTAAAGGAATAAT+AGG + chr2_2:14084561-14084580 None:intergenic 25.0%
!!! ATTATTCCTTTAAAGTTTCC+TGG - chr2_2:14084561-14084580 Msa0239610:intron 25.0%
! TAGAAGAAAACATTAAGTGA+TGG + chr2_2:14084875-14084894 None:intergenic 25.0%
! GTCTATCTTAAATCCATTAT+TGG - chr2_2:14084920-14084939 Msa0239610:CDS 25.0%
! ACACGTAAATACTAGATTAA+GGG + chr2_2:14085207-14085226 None:intergenic 25.0%
! AACACGTAAATACTAGATTA+AGG + chr2_2:14085208-14085227 None:intergenic 25.0%
! TAGTATTTACGTGTTTAGTT+AGG - chr2_2:14085213-14085232 Msa0239610:intron 25.0%
! ACATTGAAAAATGAAAAGGA+GGG + chr2_2:14085279-14085298 None:intergenic 25.0%
! AACATTGAAAAATGAAAAGG+AGG + chr2_2:14085280-14085299 None:intergenic 25.0%
!! ACTTCAAAATATCAGTCTTT+TGG + chr2_2:14085422-14085441 None:intergenic 25.0%
!!! AAGTTTGATAATGTAGATAC+TGG + chr2_2:14085498-14085517 None:intergenic 25.0%
! TATTATATGTACTTGAATGC+TGG - chr2_2:14085531-14085550 Msa0239610:intron 25.0%
! GATTATTTGAATAAACAAGC+TGG - chr2_2:14085819-14085838 Msa0239610:five_prime_UTR 25.0%
AAGTAGATTGCATTCAAACA+AGG + chr2_2:14082383-14082402 None:intergenic 30.0%
TGCAAGATAACGAGAATTAT+TGG + chr2_2:14082565-14082584 None:intergenic 30.0%
ATTAAAACACCCACTTCAAA+AGG - chr2_2:14082630-14082649 Msa0239610:three_prime_UTR 30.0%
TAAATCAATGTTGTCTTGCA+GGG - chr2_2:14083290-14083309 Msa0239610:intron 30.0%
AAATTACCTATCCATCTAGT+CGG - chr2_2:14083332-14083351 Msa0239610:intron 30.0%
CAATAGTGTTACCTTAACTA+AGG + chr2_2:14083369-14083388 None:intergenic 30.0%
TTTACGATTCTTTCTATGAC+AGG - chr2_2:14083476-14083495 Msa0239610:intron 30.0%
!!! TTAAATATTTTGGTTCTGCG+TGG + chr2_2:14083518-14083537 None:intergenic 30.0%
CTAGTGTATTTGGATCATTT+AGG - chr2_2:14083814-14083833 Msa0239610:intron 30.0%
GTGACAAGAAATAAGATATG+TGG + chr2_2:14083913-14083932 None:intergenic 30.0%
! CATTGCTATTCATTGATCTT+AGG - chr2_2:14083992-14084011 Msa0239610:intron 30.0%
!! GAAAATAGTGGACTATTTCA+GGG - chr2_2:14084029-14084048 Msa0239610:intron 30.0%
!! CCTGTATTGGTTAAATAAGT+AGG + chr2_2:14084162-14084181 None:intergenic 30.0%
CCTACTTATTTAACCAATAC+AGG - chr2_2:14084159-14084178 Msa0239610:intron 30.0%
! TTCTTGAAGTATTAGCATTC+AGG - chr2_2:14084343-14084362 Msa0239610:intron 30.0%
AAGAATCCAGGAAACTTTAA+AGG + chr2_2:14084570-14084589 None:intergenic 30.0%
TAAATCTGACTTCTCAAAGA+AGG + chr2_2:14084666-14084685 None:intergenic 30.0%
TTCAAACTAAGCAATGTTTC+TGG - chr2_2:14084781-14084800 Msa0239610:intron 30.0%
ATTAAGTGATGGCTTAATGA+AGG + chr2_2:14084864-14084883 None:intergenic 30.0%
CACGTAAATACTAGATTAAG+GGG + chr2_2:14085206-14085225 None:intergenic 30.0%
GTACATGAACGATATTTGTT+TGG - chr2_2:14085440-14085459 Msa0239610:CDS 30.0%
ATTCATTAAGTCAACAATGC+TGG - chr2_2:14085643-14085662 Msa0239610:CDS 30.0%
!! CATTGATTTACCATTAGTAC+TGG - chr2_2:14085684-14085703 Msa0239610:CDS 30.0%
!!! AGTATACATGGTCATTTTTG+TGG - chr2_2:14085788-14085807 Msa0239610:five_prime_UTR 30.0%
ATTGCATTCAAACAAGGAAG+TGG + chr2_2:14082377-14082396 None:intergenic 35.0%
!!! AAGCAACTACCTTTTGAAGT+GGG + chr2_2:14082642-14082661 None:intergenic 35.0%
!! TAAGCAACTACCTTTTGAAG+TGG + chr2_2:14082643-14082662 None:intergenic 35.0%
CTTCAAAAGGTAGTTGCTTA+AGG - chr2_2:14082643-14082662 Msa0239610:three_prime_UTR 35.0%
CACTCCAATCTTAACTAGTA+AGG + chr2_2:14082769-14082788 None:intergenic 35.0%
TAAGATTGGAGTGACAAACA+CGG - chr2_2:14082776-14082795 Msa0239610:CDS 35.0%
! ACATCGACTGATGATAAGTA+TGG - chr2_2:14082858-14082877 Msa0239610:CDS 35.0%
! TTAGAGCTTCGATTTTACAC+TGG - chr2_2:14082937-14082956 Msa0239610:intron 35.0%
! TTCATCCAATGCTTGTTAGA+AGG - chr2_2:14083077-14083096 Msa0239610:intron 35.0%
TGTTTCCTTCTAACAAGCAT+TGG + chr2_2:14083085-14083104 None:intergenic 35.0%
GTAAATCAATGTTGTCTTGC+AGG - chr2_2:14083289-14083308 Msa0239610:intron 35.0%
! AATGGTTCTGTTGAGAAGTT+TGG - chr2_2:14083403-14083422 Msa0239610:intron 35.0%
! TTCTATGACAGGAAGGTTTT+TGG - chr2_2:14083487-14083506 Msa0239610:intron 35.0%
GGAATAGTATTTGGACTTTC+AGG + chr2_2:14083558-14083577 None:intergenic 35.0%
GCATTTGCAGGAATAGTATT+TGG + chr2_2:14083567-14083586 None:intergenic 35.0%
TGTCATGAATGAAAAACACG+AGG - chr2_2:14083614-14083633 Msa0239610:CDS 35.0%
! AGTTTTCCTATCTTGTACCT+TGG - chr2_2:14083725-14083744 Msa0239610:intron 35.0%
ATTCTACCAAGGTACAAGAT+AGG + chr2_2:14083734-14083753 None:intergenic 35.0%
ACGACATTATCATTCTACCA+AGG + chr2_2:14083745-14083764 None:intergenic 35.0%
TGAGAGAGAACTAGTGTATT+TGG - chr2_2:14083804-14083823 Msa0239610:intron 35.0%
CTATAAATAAAGGAGAGGCA+AGG + chr2_2:14083850-14083869 None:intergenic 35.0%
ATCTTAGGTACTAGTTGTTC+AGG - chr2_2:14084007-14084026 Msa0239610:intron 35.0%
CTAGTTGTTCAGGAAAATAG+TGG - chr2_2:14084017-14084036 Msa0239610:intron 35.0%
!! GGAAAATAGTGGACTATTTC+AGG - chr2_2:14084028-14084047 Msa0239610:intron 35.0%
ATTTACCTGATCAACAACTC+CGG + chr2_2:14084078-14084097 None:intergenic 35.0%
CAAATATCTTCTCCCTGTAT+TGG + chr2_2:14084175-14084194 None:intergenic 35.0%
CAATGCTGTACAATTACATG+CGG - chr2_2:14084243-14084262 Msa0239610:CDS 35.0%
AATGCTGTACAATTACATGC+GGG - chr2_2:14084244-14084263 Msa0239610:CDS 35.0%
AAGAACCAAGAGTTAAATGC+AGG + chr2_2:14084298-14084317 None:intergenic 35.0%
TGAAAAAGGGGACTTCAAAT+TGG - chr2_2:14084412-14084431 Msa0239610:intron 35.0%
TAAATGCTTGACAAGAATCC+AGG + chr2_2:14084582-14084601 None:intergenic 35.0%
GGTACGTTAGTTATAGTTCA+AGG - chr2_2:14084757-14084776 Msa0239610:CDS 35.0%
TGAAGGAAAGAGGAAGAAAA+TGG + chr2_2:14084847-14084866 None:intergenic 35.0%
TACGTGTTTAGTTAGGCATA+TGG - chr2_2:14085220-14085239 Msa0239610:intron 35.0%
ACGTGTTTAGTTAGGCATAT+GGG - chr2_2:14085221-14085240 Msa0239610:intron 35.0%
AGAATGCACATAGTAGAAGT+TGG + chr2_2:14085247-14085266 None:intergenic 35.0%
TTCTACTATGTGCATTCTGA+AGG - chr2_2:14085249-14085268 Msa0239610:intron 35.0%
! TTTAGAGTGTACTGTACCTT+AGG - chr2_2:14085323-14085342 Msa0239610:intron 35.0%
TTAGAGTGTACTGTACCTTA+GGG - chr2_2:14085324-14085343 Msa0239610:CDS 35.0%
GAAGAATTGATATCTCCCTA+AGG + chr2_2:14085342-14085361 None:intergenic 35.0%
! CGTATTTTTCTTTACTGCAG+TGG - chr2_2:14085361-14085380 Msa0239610:CDS 35.0%
! ATATCAGTCTTTTGGACGAA+TGG + chr2_2:14085414-14085433 None:intergenic 35.0%
CGATATTTGTTTGGCTAAGA+TGG - chr2_2:14085449-14085468 Msa0239610:CDS 35.0%
ATTTGTTTGGCTAAGATGGA+TGG - chr2_2:14085453-14085472 Msa0239610:CDS 35.0%
TTTGTTTGGCTAAGATGGAT+GGG - chr2_2:14085454-14085473 Msa0239610:CDS 35.0%
!!! TGCTGATGTTTTTCAAGAGT+TGG + chr2_2:14085571-14085590 None:intergenic 35.0%
CTCTTGAAAAACATCAGCAA+AGG - chr2_2:14085572-14085591 Msa0239610:intron 35.0%
CAAAGGTTAAACAGCTAGAT+AGG - chr2_2:14085589-14085608 Msa0239610:intron 35.0%
AATGACAAAGCCAGTACTAA+TGG + chr2_2:14085697-14085716 None:intergenic 35.0%
CAAACAAGGAAGTGGAACAT+TGG + chr2_2:14082369-14082388 None:intergenic 40.0%
TTGAACTTGATCTTCTGCCT+CGG + chr2_2:14082823-14082842 None:intergenic 40.0%
AGGCAGAAGATCAAGTTCAA+CGG - chr2_2:14082823-14082842 Msa0239610:CDS 40.0%
TCGACTGATGATAAGTATGG+CGG - chr2_2:14082861-14082880 Msa0239610:CDS 40.0%
ACGAATGTAGTCGAATCCAT+AGG + chr2_2:14082909-14082928 None:intergenic 40.0%
! GATTTTACACTGGAAGCAGA+TGG - chr2_2:14082947-14082966 Msa0239610:intron 40.0%
! CGCGAGTTGTGATATTGATT+TGG - chr2_2:14083154-14083173 Msa0239610:intron 40.0%
TCTTGCTGAAGCCTTAGTTA+AGG - chr2_2:14083355-14083374 Msa0239610:intron 40.0%
CGATTCTTTCTATGACAGGA+AGG - chr2_2:14083480-14083499 Msa0239610:intron 40.0%
! AAGTACTGTCTTGACGTTTG+AGG - chr2_2:14083693-14083712 Msa0239610:intron 40.0%
AGTACTGTCTTGACGTTTGA+GGG - chr2_2:14083694-14083713 Msa0239610:intron 40.0%
CTGAATTTACACGGTTCTGT+TGG - chr2_2:14083952-14083971 Msa0239610:intron 40.0%
TATTTCAGGGAACTGGAGTT+TGG - chr2_2:14084042-14084061 Msa0239610:intron 40.0%
AGAAGATATTTGCGTAGCAG+CGG - chr2_2:14084183-14084202 Msa0239610:intron 40.0%
TTAAATGCAGGTAGAGGAAC+TGG + chr2_2:14084286-14084305 None:intergenic 40.0%
CAAGAGTTAAATGCAGGTAG+AGG + chr2_2:14084292-14084311 None:intergenic 40.0%
CTCTACCTGCATTTAACTCT+TGG - chr2_2:14084290-14084309 Msa0239610:intron 40.0%
AAAAGGGGACTTCAAATTGG+AGG - chr2_2:14084415-14084434 Msa0239610:intron 40.0%
GACTTCAAATTGGAGGTAGA+AGG - chr2_2:14084422-14084441 Msa0239610:intron 40.0%
GATGGCTTAATGAAGGAAAG+AGG + chr2_2:14084857-14084876 None:intergenic 40.0%
GTAAGGTGAAGATTGCCTAA+GGG + chr2_2:14085050-14085069 None:intergenic 40.0%
TGTAAGGTGAAGATTGCCTA+AGG + chr2_2:14085051-14085070 None:intergenic 40.0%
GCAATCTTCACCTTACAAGT+CGG - chr2_2:14085054-14085073 Msa0239610:intron 40.0%
!! TTCCATGAAACCGACTTGTA+AGG + chr2_2:14085067-14085086 None:intergenic 40.0%
! CAAGTCGGTTTCATGGAATT+AGG - chr2_2:14085069-14085088 Msa0239610:intron 40.0%
CTTGAAAGGAGAGTTGAGTT+AGG - chr2_2:14085150-14085169 Msa0239610:intron 40.0%
!! TGAATGCTGGAGCATTGAAA+AGG - chr2_2:14085544-14085563 Msa0239610:intron 40.0%
TCGGTTGACATGCATCGAAT+AGG + chr2_2:14082804-14082823 None:intergenic 45.0%
TATTCGATGCATGTCAACCG+AGG - chr2_2:14082803-14082822 Msa0239610:CDS 45.0%
TAAGTATGGCGGCGTTATTG+TGG - chr2_2:14082872-14082891 Msa0239610:CDS 45.0%
!! AGTGGACTATTTCAGGGAAC+TGG - chr2_2:14084035-14084054 Msa0239610:intron 45.0%
GGAGTTTGGAAATTCCCTAC+CGG - chr2_2:14084056-14084075 Msa0239610:intron 45.0%
AGAGAGGTCAAAGAAGAGAC+AGG - chr2_2:14084208-14084227 Msa0239610:CDS 45.0%
TAGAGGAACTGGAATCCACA+TGG + chr2_2:14084275-14084294 None:intergenic 45.0%
TGTATGGGAGAATGTGTGCT+AGG - chr2_2:14084493-14084512 Msa0239610:intron 45.0%
ACTTGGATCTCAGACGAAAG+GGG + chr2_2:14084710-14084729 None:intergenic 45.0%
CACTTGGATCTCAGACGAAA+GGG + chr2_2:14084711-14084730 None:intergenic 45.0%
TGCATTGGATGGCCCAATAA+TGG + chr2_2:14084936-14084955 None:intergenic 45.0%
TATTGGGCCATCCAATGCAT+AGG - chr2_2:14084937-14084956 Msa0239610:CDS 45.0%
ATTGGGCCATCCAATGCATA+GGG - chr2_2:14084938-14084957 Msa0239610:CDS 45.0%
AACAGACCCTATGCATTGGA+TGG + chr2_2:14084947-14084966 None:intergenic 45.0%
TCCAATGCATAGGGTCTGTT+TGG - chr2_2:14084947-14084966 Msa0239610:CDS 45.0%
CCAATGCATAGGGTCTGTTT+GGG - chr2_2:14084948-14084967 Msa0239610:CDS 45.0%
TAGGGTCTGTTTGGGAGTTT+AGG - chr2_2:14084956-14084975 Msa0239610:CDS 45.0%
GTCTGTTTGGGAGTTTAGGA+GGG - chr2_2:14084960-14084979 Msa0239610:CDS 45.0%
TCTGTTTGGGAGTTTAGGAG+GGG - chr2_2:14084961-14084980 Msa0239610:CDS 45.0%
! TAAGGGCATGTTTGGGAGTT+TGG + chr2_2:14085033-14085052 None:intergenic 45.0%
AAACTCCCAAACATGCCCTT+AGG - chr2_2:14085032-14085051 Msa0239610:intron 45.0%
! GATTGCCTAAGGGCATGTTT+GGG + chr2_2:14085040-14085059 None:intergenic 45.0%
! AGATTGCCTAAGGGCATGTT+TGG + chr2_2:14085041-14085060 None:intergenic 45.0%
! CACCTTACAAGTCGGTTTCA+TGG - chr2_2:14085062-14085081 Msa0239610:intron 45.0%
TATCCAGTCTCGAGCTTGAA+AGG - chr2_2:14085136-14085155 Msa0239610:intron 45.0%
TGAGACGCGTATTCCACAAA+TGG + chr2_2:14085390-14085409 None:intergenic 45.0%
AAGATGGATGGGCGATATTC+TGG - chr2_2:14085465-14085484 Msa0239610:CDS 45.0%
!! CAACAATGCTGGTCTTGATG+AGG - chr2_2:14085654-14085673 Msa0239610:CDS 45.0%
!! ATTAATTAAATTAAATATAG+AGG + chr2_2:14083890-14083909 None:intergenic 5.0%
TGTGGAGCTTGATCAGCCTA+TGG - chr2_2:14082890-14082909 Msa0239610:CDS 50.0%
TGTTGTCTTGCAGGGCAAGA+AGG - chr2_2:14083298-14083317 Msa0239610:intron 50.0%
GTTGTCTTGCAGGGCAAGAA+GGG - chr2_2:14083299-14083318 Msa0239610:intron 50.0%
GCAAGACCGACTAGATGGAT+AGG + chr2_2:14083341-14083360 None:intergenic 50.0%
CTTCAGCAAGACCGACTAGA+TGG + chr2_2:14083346-14083365 None:intergenic 50.0%
TTCCTGCAAATGCCACACAC+AGG - chr2_2:14083574-14083593 Msa0239610:CDS 50.0%
TCCTGCAAATGCCACACACA+GGG - chr2_2:14083575-14083594 Msa0239610:CDS 50.0%
CCTGATCAACAACTCCGGTA+GGG + chr2_2:14084073-14084092 None:intergenic 50.0%
ACCTGATCAACAACTCCGGT+AGG + chr2_2:14084074-14084093 None:intergenic 50.0%
GCACTTGGATCTCAGACGAA+AGG + chr2_2:14084712-14084731 None:intergenic 50.0%
CTATCTCTGACCTCTGCACT+TGG + chr2_2:14084727-14084746 None:intergenic 50.0%
AGTGCAGAGGTCAGAGATAG+AGG - chr2_2:14084727-14084746 Msa0239610:CDS 50.0%
GTGCAGAGGTCAGAGATAGA+GGG - chr2_2:14084728-14084747 Msa0239610:CDS 50.0%
CCCAAACAGACCCTATGCAT+TGG + chr2_2:14084951-14084970 None:intergenic 50.0%
GGTCTGTTTGGGAGTTTAGG+AGG - chr2_2:14084959-14084978 Msa0239610:CDS 50.0%
GAGTTTAGGAGGGGAGAAGA+GGG - chr2_2:14084970-14084989 Msa0239610:intron 50.0%
GCATGTTTGGGAGTTTGGAG+GGG + chr2_2:14085028-14085047 None:intergenic 50.0%
GGCATGTTTGGGAGTTTGGA+GGG + chr2_2:14085029-14085048 None:intergenic 50.0%
TCTCCTTTCAAGCTCGAGAC+TGG + chr2_2:14085142-14085161 None:intergenic 50.0%
! ACTGCAGTGGATGCCATTTG+TGG - chr2_2:14085374-14085393 Msa0239610:CDS 50.0%
TGCAGGGCAAGAAGGGAGTT+TGG - chr2_2:14083306-14083325 Msa0239610:intron 55.0%
ACCCTGTGTGTGGCATTTGC+AGG + chr2_2:14083579-14083598 None:intergenic 55.0%
GCAAATGCCACACACAGGGT+TGG - chr2_2:14083579-14083598 Msa0239610:CDS 55.0%
ACCAATGCCAACCCTGTGTG+TGG + chr2_2:14083589-14083608 None:intergenic 55.0%
CCCTACCGGAGTTGTTGATC+AGG - chr2_2:14084070-14084089 Msa0239610:CDS 55.0%
TTGCGTAGCAGCGGTAAGAG+AGG - chr2_2:14084192-14084211 Msa0239610:intron 55.0%
!! TACATGCGGGCTAGTCCATG+TGG - chr2_2:14084257-14084276 Msa0239610:CDS 55.0%
! CGTCTGAGATCCAAGTGCAG+AGG - chr2_2:14084714-14084733 Msa0239610:CDS 55.0%
! GTCAGAGATAGAGGGTGCAC+AGG - chr2_2:14084736-14084755 Msa0239610:CDS 55.0%
GGAGTTTAGGAGGGGAGAAG+AGG - chr2_2:14084969-14084988 Msa0239610:intron 55.0%
! AGCGAAGGACTTTGGGGGAA+GGG + chr2_2:14085005-14085024 None:intergenic 55.0%
GGGCATGTTTGGGAGTTTGG+AGG + chr2_2:14085030-14085049 None:intergenic 55.0%
! GCCACACACAGGGTTGGCAT+TGG - chr2_2:14083585-14083604 Msa0239610:CDS 60.0%
AGGAGGGGAGAAGAGGGCTA+TGG - chr2_2:14084976-14084995 Msa0239610:intron 60.0%
GGAGGGGAGAAGAGGGCTAT+GGG - chr2_2:14084977-14084996 Msa0239610:intron 60.0%
! GCGAAGGACTTTGGGGGAAG+GGG + chr2_2:14085004-14085023 None:intergenic 60.0%
! GAGCGAAGGACTTTGGGGGA+AGG + chr2_2:14085006-14085025 None:intergenic 60.0%
AGGGGAGCGAAGGACTTTGG+GGG + chr2_2:14085010-14085029 None:intergenic 60.0%
GAGGGGAGCGAAGGACTTTG+GGG + chr2_2:14085011-14085030 None:intergenic 60.0%
GGAGGGGAGCGAAGGACTTT+GGG + chr2_2:14085012-14085031 None:intergenic 60.0%
TGGAGGGGAGCGAAGGACTT+TGG + chr2_2:14085013-14085032 None:intergenic 60.0%
GGGAGTTTGGAGGGGAGCGA+AGG + chr2_2:14085020-14085039 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 14082366 14085926 14082366 ID=Msa0239610;Name=Msa0239610
chr2_2 mRNA 14082366 14085926 14082366 ID=Msa0239610-mRNA-1;Parent=Msa0239610;Name=Msa0239610-mRNA-1;_AED=0.19;_eAED=0.19;_QI=153|1|1|1|1|1|9|348|333
chr2_2 exon 14082366 14082911 14082366 ID=Msa0239610-mRNA-1:exon:5856;Parent=Msa0239610-mRNA-1
chr2_2 exon 14083535 14083643 14083535 ID=Msa0239610-mRNA-1:exon:5855;Parent=Msa0239610-mRNA-1
chr2_2 exon 14083928 14083962 14083928 ID=Msa0239610-mRNA-1:exon:5854;Parent=Msa0239610-mRNA-1
chr2_2 exon 14084061 14084111 14084061 ID=Msa0239610-mRNA-1:exon:5853;Parent=Msa0239610-mRNA-1
chr2_2 exon 14084201 14084278 14084201 ID=Msa0239610-mRNA-1:exon:5852;Parent=Msa0239610-mRNA-1
chr2_2 exon 14084657 14084794 14084657 ID=Msa0239610-mRNA-1:exon:5851;Parent=Msa0239610-mRNA-1
chr2_2 exon 14084916 14084981 14084916 ID=Msa0239610-mRNA-1:exon:5850;Parent=Msa0239610-mRNA-1
chr2_2 exon 14085324 14085517 14085324 ID=Msa0239610-mRNA-1:exon:5849;Parent=Msa0239610-mRNA-1
chr2_2 exon 14085641 14085926 14085641 ID=Msa0239610-mRNA-1:exon:5848;Parent=Msa0239610-mRNA-1
chr2_2 five_prime_UTR 14085774 14085926 14085774 ID=Msa0239610-mRNA-1:five_prime_utr;Parent=Msa0239610-mRNA-1
chr2_2 CDS 14085641 14085773 14085641 ID=Msa0239610-mRNA-1:cds;Parent=Msa0239610-mRNA-1
chr2_2 CDS 14085324 14085517 14085324 ID=Msa0239610-mRNA-1:cds;Parent=Msa0239610-mRNA-1
chr2_2 CDS 14084916 14084981 14084916 ID=Msa0239610-mRNA-1:cds;Parent=Msa0239610-mRNA-1
chr2_2 CDS 14084657 14084794 14084657 ID=Msa0239610-mRNA-1:cds;Parent=Msa0239610-mRNA-1
chr2_2 CDS 14084201 14084278 14084201 ID=Msa0239610-mRNA-1:cds;Parent=Msa0239610-mRNA-1
chr2_2 CDS 14084061 14084111 14084061 ID=Msa0239610-mRNA-1:cds;Parent=Msa0239610-mRNA-1
chr2_2 CDS 14083928 14083962 14083928 ID=Msa0239610-mRNA-1:cds;Parent=Msa0239610-mRNA-1
chr2_2 CDS 14083535 14083643 14083535 ID=Msa0239610-mRNA-1:cds;Parent=Msa0239610-mRNA-1
chr2_2 CDS 14082714 14082911 14082714 ID=Msa0239610-mRNA-1:cds;Parent=Msa0239610-mRNA-1
chr2_2 three_prime_UTR 14082366 14082713 14082366 ID=Msa0239610-mRNA-1:three_prime_utr;Parent=Msa0239610-mRNA-1
Gene Sequence

>Msa0239610

ATGCTTAGATCGCTTCCAAAATTCTCAATTATCTTCTCTTCAACCAATAATTCTCGTTATCTTGCAAATGCTACTCAACGTTTTATATCTTCATGTAGAACAAGGAGAATAATTAAAACACCCACTTCAAAAGTTAAGATTGGAGTGACAAACACGGTTCCTATTCGATGCATGTCAACCGAGGCAGAAGATCAAGTTCAACGGATTAAAGTACTAACATCGACTGATGATAAGTATGGCGGCGTTATTGTGGAGCTTGATCAGCCTATGGATTCGACTACATTCGTCTCAATTCTTAGAGCTTCGATTTTACACTGGAAGCAGATGGGCAAGAAGGGAGTTTGGATAAAATTACCTATCCATCTAGTCGGTCTTGCTGAAGCCTTAGTTAAGGAAGGTTTTTGGTTTCACCACGCAGAACCAAAATATTTAATGCTTGTATATTGGATTCCTGAAAGTCCAAATACTATTCCTGCAAATGCCACACACAGGGTTGGCATTGGTTCATTTGTCATGAATGAAAAACACGAGGTACTAGTTGTTCAGGAAAATAGTGGACTATTTCAGGGAACTGGAGTTTGGAAATTCCCTACCGGAGTTGTTGATCAGGGAGAAGATATTTGCGTAGCAGCGGTAAGAGAGGTCAAAGAAGAGACAGGAGTTGATTCAGAATTTCTTGAAGTATTAGCATTCAGACAGAGTCACAATTCCTTCTTTGAGAAGTCAGATTTATTCTTTATGTGTATGTTACGGCCCCTTTCGTCTGAGATCCAAGTGCAGAGGTCAGAGATAGAGGGTGCACAGTGGATGCCATTTGTGGAATACGCGTCTCAGCCATTCGTCCAAAAGACTGATATTTTGAAGTACATGAACGATATTTGTTTGGCTAAGATGGATGGGCGATATTCTGGATATACTCCAGTATCTACATTATCAAACTTCTCAGAACAGCAGTATTATATGTACTTGAATGCTGGAGCATTGAAAAGGTCCAACTCTTGA

Protein sequence

>Msa0239610

MLRSLPKFSIIFSSTNNSRYLANATQRFISSCRTRRIIKTPTSKVKIGVTNTVPIRCMSTEAEDQVQRIKVLTSTDDKYGGVIVELDQPMDSTTFVSILRASILHWKQMGKKGVWIKLPIHLVGLAEALVKEGFWFHHAEPKYLMLVYWIPESPNTIPANATHRVGIGSFVMNEKHEVLVVQENSGLFQGTGVWKFPTGVVDQGEDICVAAVREVKEETGVDSEFLEVLAFRQSHNSFFEKSDLFFMCMLRPLSSEIQVQRSEIEGAQWMPFVEYASQPFVQKTDILKYMNDICLAKMDGRYSGYTPVSTLSNFSEQQYYMYLNAGALKRSNS*