AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1460530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460530 MtrunA17_Chr2g0322321 94.240 434 25 0 14 447 47 480 0.0 815
Msa1460530 MtrunA17_Chr1g0154381 40.291 412 240 4 23 431 91 499 1.36e-105 323
Msa1460530 MtrunA17_Chr3g0141271 38.724 439 254 6 21 447 123 558 2.16e-101 313
Msa1460530 MtrunA17_Chr1g0162571 37.330 442 256 8 21 446 46 482 2.07e-89 280
Msa1460530 MtrunA17_Chr4g0034141 36.085 424 257 7 21 436 43 460 1.85e-85 270
Msa1460530 MtrunA17_Chr1g0162591 38.843 242 133 4 217 446 3 241 1.35e-49 169
Msa1460530 MtrunA17_Chr1g0162581 33.495 206 125 5 21 219 50 250 3.00e-27 109
Msa1460530 MtrunA17_Chr2g0296651 28.125 192 107 5 249 431 289 458 7.82e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460530 AT4G15440.1 60.677 384 147 3 68 447 1 384 8.72e-172 487
Msa1460530 AT5G42650.1 40.865 416 240 3 19 431 81 493 8.89e-107 326

Find 151 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTACCTGCACACTGTTTAT+TGG 0.128108 tig0040952:+10376 None:intergenic
CAGACAGGTTAGATTATTTC+TGG 0.141000 tig0040952:-15388 Msa1460530:CDS
TTGAATTTACGGGAAATATT+AGG 0.183729 tig0040952:-15158 Msa1460530:CDS
GTTATGCTCTCAATCAATTT+TGG 0.194984 tig0040952:+10776 None:intergenic
CGTCGGTATGATTTAATTAA+AGG 0.200247 tig0040952:-10308 Msa1460530:CDS
AACTATTTGTATTGGTCTAA+TGG 0.210824 tig0040952:-10425 Msa1460530:CDS
AAGTAAGTTAAGTAAGAAAA+AGG 0.224562 tig0040952:-10078 Msa1460530:three_prime_UTR
GGAGCCTGATTCGGCGATTT+TGG 0.224744 tig0040952:+11267 None:intergenic
TTTCTCTCACCTCTTTGATA+TGG 0.280521 tig0040952:-15229 Msa1460530:CDS
TGTTCCTAGTGTTGAATTTA+CGG 0.291492 tig0040952:-15169 Msa1460530:CDS
TCAAGAACTGCAATAATATT+AGG 0.294757 tig0040952:+15261 None:intergenic
TCGGTGGAGGTCACACTTTA+TGG 0.299964 tig0040952:+15555 None:intergenic
TGAAGCAAAGTTCAAGCATA+TGG 0.300137 tig0040952:-11444 Msa1460530:CDS
CCACCGGTTCCACTTCAATT+TGG 0.305118 tig0040952:-10620 Msa1460530:CDS
AGAAGGCCAAATGAAGAGTT+AGG 0.305897 tig0040952:-10259 Msa1460530:exon
GCTACCGATCCGGCAGATTC+CGG 0.308018 tig0040952:-15444 Msa1460530:five_prime_UTR
TGAATTTACGGGAAATATTA+GGG 0.330709 tig0040952:-15157 Msa1460530:CDS
GACGGTGGTGGTATCGGTGG+TGG 0.334671 tig0040952:+15500 None:intergenic
ACTTTGCTTCAAAATGTTCA+TGG 0.334862 tig0040952:+11456 None:intergenic
ACTATTTGTATTGGTCTAAT+GGG 0.337855 tig0040952:-10424 Msa1460530:CDS
TAGACAGTGTTGCTTCAATT+TGG 0.347494 tig0040952:+11383 None:intergenic
TCCAGGTTTGATATCAGTTC+TGG 0.348706 tig0040952:+11418 None:intergenic
AGCTCCGTTGGCCTTGCTTT+CGG 0.351852 tig0040952:+15464 None:intergenic
GTCGGTATGATTTAATTAAA+GGG 0.360322 tig0040952:-10307 Msa1460530:CDS
CGTTCCGGTTTAAATTGTTC+TGG 0.360380 tig0040952:+10479 None:intergenic
ACCAACCCTAACTCTTCATT+TGG 0.361089 tig0040952:+10253 None:intergenic
TTCTCTTTAGTGAACCGTTC+CGG 0.366646 tig0040952:+10464 None:intergenic
AATGGCCATCCGTGGCTTCC+CGG 0.370701 tig0040952:+15425 None:intergenic
GTTCCTAGTGTTGAATTTAC+GGG 0.375540 tig0040952:-15168 Msa1460530:CDS
GTGTTGGGTTTCAACTCATA+TGG 0.377271 tig0040952:-10818 Msa1460530:CDS
GATCCCAAAATCGCCGAATC+AGG 0.380571 tig0040952:-11271 Msa1460530:CDS
GAGAAAGGCGGTTCAACTCT+TGG 0.381113 tig0040952:-10707 Msa1460530:CDS
ATAATCTAACCTGTCTGATA+AGG 0.382700 tig0040952:+15394 None:intergenic
TTGCTTTCGGTGGAGTTGCT+AGG 0.382888 tig0040952:+15477 None:intergenic
AGTTATTGAACTATTTGTAT+TGG 0.390965 tig0040952:-10433 Msa1460530:CDS
GAACCGGTGGGTTCATTCGC+AGG 0.400858 tig0040952:+10633 None:intergenic
CTACCGATCCGGCAGATTCC+GGG 0.403146 tig0040952:-15443 Msa1460530:five_prime_UTR
AGAGTTGGAACTAATAAATT+CGG 0.427670 tig0040952:-10669 Msa1460530:CDS
AGAAAGGCGGTTCAACTCTT+GGG 0.427891 tig0040952:-10706 Msa1460530:CDS
GGAAAATTTCTTCGAGTGGT+TGG 0.429611 tig0040952:+11185 None:intergenic
TGGTCTAATGGGCCACAAAC+TGG 0.430261 tig0040952:-10413 Msa1460530:CDS
GAGAAGAAGAGAAGAGAGTT+CGG 0.441579 tig0040952:+15536 None:intergenic
TAATCTAACCTGTCTGATAA+GGG 0.445035 tig0040952:+15395 None:intergenic
TCTTCATTTGGCCTTCTGTA+AGG 0.448353 tig0040952:+10265 None:intergenic
GGATTCACGTTGGTGAAGAA+AGG 0.453342 tig0040952:+15282 None:intergenic
TCTCAACTTCTCTTGCAAAC+CGG 0.454849 tig0040952:+10742 None:intergenic
CATAAGGGTAAGAGAAGGAA+TGG 0.459434 tig0040952:+11161 None:intergenic
GGCCTTCTGTAAGGCAGTAA+TGG 0.459616 tig0040952:+10274 None:intergenic
GACAAAAGAGATGTTCTAGT+TGG 0.460373 tig0040952:-15198 Msa1460530:CDS
GAAGCAAAGTTCAAGCATAT+GGG 0.463109 tig0040952:-11443 Msa1460530:CDS
GCTAGGGACGGTGGTGGTAT+CGG 0.463818 tig0040952:+15494 None:intergenic
TGCTTTCGGTGGAGTTGCTA+GGG 0.468309 tig0040952:+15478 None:intergenic
CAATAAACAGTGTGCAGGTA+AGG 0.471780 tig0040952:-10375 Msa1460530:CDS
TGAACCAGAACAATTTAAAC+CGG 0.473665 tig0040952:-10483 Msa1460530:CDS
ATCAAGGGAAGGATCGGCTC+TGG 0.474506 tig0040952:+11291 None:intergenic
TACCCTTATGCTCTTGTCAG+TGG 0.477774 tig0040952:-11148 Msa1460530:CDS
CGACCAAATTGAAGTGGAAC+CGG 0.478711 tig0040952:+10617 None:intergenic
CTCCGCGTTCAATGTGAAGA+AGG 0.479052 tig0040952:-10561 Msa1460530:CDS
GTTTGACTCGTTAAAAGAGT+TGG 0.480961 tig0040952:-10684 Msa1460530:CDS
TCTCCACTGACAAGAGCATA+AGG 0.482167 tig0040952:+11145 None:intergenic
GAGCATGGAGGAGCCTGATT+CGG 0.489708 tig0040952:+11258 None:intergenic
AGAAAGGAAGCAAGAGAGAA+AGG 0.493653 tig0040952:-10722 Msa1460530:CDS
GGCCAACGGAGCTACCGATC+CGG 0.494027 tig0040952:-15454 Msa1460530:five_prime_UTR
GCTCCTCCATGCTCAACAAA+TGG 0.496661 tig0040952:-11249 Msa1460530:CDS
CACTGTTTATTGGACACAGT+TGG 0.496951 tig0040952:+10386 None:intergenic
CTCTGGCAAGTACTTTGCTT+AGG 0.499755 tig0040952:+11308 None:intergenic
TGCGAGCCATTTGTTGAGCA+TGG 0.501636 tig0040952:+11243 None:intergenic
CGTGGCTTCCCGGAATCTGC+CGG 0.503229 tig0040952:+15435 None:intergenic
TGCTAGGTCCCTTATCAGAC+AGG 0.504652 tig0040952:-15403 Msa1460530:CDS
TGGGTTTCAACTCATATGGT+GGG 0.510542 tig0040952:-10814 Msa1460530:CDS
TGCCGGATCGGTAGCTCCGT+TGG 0.513185 tig0040952:+15452 None:intergenic
TTCGGTGGAGTTGCTAGGGA+CGG 0.513266 tig0040952:+15482 None:intergenic
TTTACGGGAAATATTAGGGT+TGG 0.514210 tig0040952:-15153 Msa1460530:CDS
ACGGTGGTGGTATCGGTGGT+GGG 0.518078 tig0040952:+15501 None:intergenic
AATTTCTTCGAGTGGTTGGA+TGG 0.518200 tig0040952:+11189 None:intergenic
CTGGCTCGACCAAATTGAAG+TGG 0.519831 tig0040952:+10611 None:intergenic
GATTCACGTTGGTGAAGAAA+GGG 0.521739 tig0040952:+15283 None:intergenic
AGAAGGGTGAGTTATTATGT+GGG 0.524535 tig0040952:-10544 Msa1460530:CDS
AACTTCTCTTGCAAACCGGT+TGG 0.526019 tig0040952:+10746 None:intergenic
GTGAACAGAAATTTCTGCAG+TGG 0.528197 tig0040952:+11334 None:intergenic
TTGGGTTTCAACTCATATGG+TGG 0.534485 tig0040952:-10815 Msa1460530:CDS
TTTGCAAGAGAAGTTGAGAA+AGG 0.535515 tig0040952:-10738 Msa1460530:CDS
TCCGTTGGCCTTGCTTTCGG+TGG 0.541082 tig0040952:+15467 None:intergenic
TATGATTTAATTAAAGGGGA+TGG 0.541669 tig0040952:-10302 Msa1460530:CDS
CACAATCAACGCAGCGGTGA+AGG 0.542968 tig0040952:+10343 None:intergenic
AGCCACGGATGGCCATTGCT+AGG 0.543267 tig0040952:-15419 Msa1460530:exon
CTTCCCGGAATCTGCCGGAT+CGG 0.543367 tig0040952:+15440 None:intergenic
AGGGACGGTGGTGGTATCGG+TGG 0.543609 tig0040952:+15497 None:intergenic
TTCTGAACCTCAACATGCTA+AGG 0.543924 tig0040952:-15115 Msa1460530:intron
TCTGGTTCATCAAACACGAC+CGG 0.544589 tig0040952:+10497 None:intergenic
AAGAGAAGAGAGTTCGGTGG+AGG 0.545388 tig0040952:+15542 None:intergenic
AAGAAGAGAAGAGAGTTCGG+TGG 0.545911 tig0040952:+15539 None:intergenic
AAGAAGGGTGAGTTATTATG+TGG 0.548271 tig0040952:-10545 Msa1460530:CDS
GTTGTTTAATGAAGTTGTAG+AGG 0.549200 tig0040952:+11113 None:intergenic
CTTCACCGCTGCGTTGATTG+TGG 0.549965 tig0040952:-10342 Msa1460530:CDS
TGGAGGAAAATTTCTTCGAG+TGG 0.550646 tig0040952:+11181 None:intergenic
TGAACAGAAATTTCTGCAGT+GGG 0.551534 tig0040952:+11335 None:intergenic
GGAGTTGCTAGGGACGGTGG+TGG 0.552416 tig0040952:+15488 None:intergenic
TTTGGGATCAAGGGAAGGAT+CGG 0.552953 tig0040952:+11285 None:intergenic
ACCAGAACTGATATCAAACC+TGG 0.557853 tig0040952:-11419 Msa1460530:CDS
GCCAAATGAAGAGTTAGGGT+TGG 0.558819 tig0040952:-10254 Msa1460530:exon
GGTTTCAGAAGCTTGTAATG+AGG 0.560783 tig0040952:-10523 Msa1460530:CDS
TTTCCCGTAAATTCAACACT+AGG 0.562457 tig0040952:+15165 None:intergenic
CGGCAGATTCCGGGAAGCCA+CGG 0.563660 tig0040952:-15434 Msa1460530:five_prime_UTR
CTCCACTGACAAGAGCATAA+GGG 0.568207 tig0040952:+11146 None:intergenic
AACCGGTGGGTTCATTCGCA+GGG 0.568675 tig0040952:+10634 None:intergenic
TTCCATTACTGCCTTACAGA+AGG 0.570694 tig0040952:-10276 Msa1460530:CDS
ATCAAGTTCAAGTATAAGGA+AGG 0.571397 tig0040952:+10014 Msa1460520:three_prime_UTR
GTTGGAACTAATAAATTCGG+TGG 0.571940 tig0040952:-10666 Msa1460530:CDS
GAACGGTTCACTAAAGAGAA+AGG 0.572715 tig0040952:-10461 Msa1460530:CDS
AGTGGTACCTTAGCATGTTG+AGG 0.575238 tig0040952:+15108 None:intergenic
GAAGGCCAAATGAAGAGTTA+GGG 0.575465 tig0040952:-10258 Msa1460530:exon
GTGTCCAATAAACAGTGTGC+AGG 0.576661 tig0040952:-10380 Msa1460530:CDS
TCGGTATGATTTAATTAAAG+GGG 0.578026 tig0040952:-10306 Msa1460530:CDS
AGGGAACGTGGGTGGAACAT+TGG 0.578719 tig0040952:+15302 None:intergenic
CTGGTTCATCAAACACGACC+GGG 0.580825 tig0040952:+10498 None:intergenic
AAGAGCATAAGGGTAAGAGA+AGG 0.584245 tig0040952:+11156 None:intergenic
ACAGTTGGCGAACCAGTTTG+TGG 0.585878 tig0040952:+10401 None:intergenic
AAGGGTAAGAGAAGGAATGG+AGG 0.585930 tig0040952:+11164 None:intergenic
GTTTCAGAAGCTTGTAATGA+GGG 0.587067 tig0040952:-10522 Msa1460530:CDS
TAGCAACTCCACCGAAAGCA+AGG 0.588271 tig0040952:-15475 Msa1460530:five_prime_UTR
GGTGGAGTTGCTAGGGACGG+TGG 0.594020 tig0040952:+15485 None:intergenic
AGTAACTTTACTATCTATCA+CGG 0.603195 tig0040952:-15697 Msa1460530:five_prime_UTR
TCTGATAAGGGACCTAGCAA+TGG 0.603682 tig0040952:+15407 None:intergenic
AGATTCCGGGAAGCCACGGA+TGG 0.603980 tig0040952:-15430 Msa1460530:exon
TTGTGGCACACTTGTTACGT+CGG 0.612333 tig0040952:-10325 Msa1460530:CDS
TATCGGTGGTGGGAGTGACA+TGG 0.613140 tig0040952:+15511 None:intergenic
CCAAATTGAAGTGGAACCGG+TGG 0.613875 tig0040952:+10620 None:intergenic
TCCGCGTTCAATGTGAAGAA+GGG 0.615898 tig0040952:-10560 Msa1460530:CDS
TCCACCGAAAGCAAGGCCAA+CGG 0.616945 tig0040952:-15468 Msa1460530:five_prime_UTR
CAGAACAATTTAAACCGGAA+CGG 0.632046 tig0040952:-10478 Msa1460530:CDS
ACGTGGGTGGAACATTGGTA+CGG 0.634090 tig0040952:+15307 None:intergenic
GACCTAGCAATGGCCATCCG+TGG 0.636484 tig0040952:+15417 None:intergenic
GTGAAGAAAGGGAACGTGGG+TGG 0.642657 tig0040952:+15294 None:intergenic
CAACAAGGTCCATATCAAAG+AGG 0.642799 tig0040952:+15220 None:intergenic
AATAATATTAGGATTCACGT+TGG 0.648803 tig0040952:+15272 None:intergenic
GTTGGTGAAGAAAGGGAACG+TGG 0.649752 tig0040952:+15290 None:intergenic
CTTCTACCGACTGTGAGTGT+CGG 0.652078 tig0040952:-11214 Msa1460530:CDS
AACCCTGCGAATGAACCCAC+CGG 0.654342 tig0040952:-10636 Msa1460530:CDS
ATACAAATAGTTCAATAACT+CGG 0.658718 tig0040952:+10436 None:intergenic
ACCCTTCTTCACATTGAACG+CGG 0.658842 tig0040952:+10559 None:intergenic
TACAACTTCATTAAACAACA+TGG 0.659594 tig0040952:-11109 Msa1460530:intron
GAAGCTTGTAATGAGGGACC+CGG 0.667156 tig0040952:-10516 Msa1460530:CDS
CAAATTGAAGTGGAACCGGT+GGG 0.672914 tig0040952:+10621 None:intergenic
TTGATTGAGAGCATAACGAA+CGG 0.681802 tig0040952:-10770 Msa1460530:CDS
AAGGAAGCAAGAGAGAAAGG+CGG 0.704473 tig0040952:-10719 Msa1460530:CDS
GAGCCATTTGTTGAGCATGG+AGG 0.708844 tig0040952:+11246 None:intergenic
TTGGTGAAGAAAGGGAACGT+GGG 0.709718 tig0040952:+15291 None:intergenic
ATGGTGCCGACACTCACAGT+CGG 0.714178 tig0040952:+11208 None:intergenic
GTGTGCCACAATCAACGCAG+CGG 0.735438 tig0040952:+10337 None:intergenic
GAACAGAAATTTCTGCAGTG+GGG 0.775291 tig0040952:+11336 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATAACTATTTTTTTTATA+AGG - tig0040952:11416-11435 Msa1460530:CDS 10.0%
!! TTTACTTGATTTATTATTTA+AGG - tig0040952:11783-11802 Msa1460530:intron 10.0%
!!! TTTCTAGTTAAAAAATTTAA+CGG - tig0040952:11841-11860 Msa1460530:intron 10.0%
!!! ATTATTTATTGTACTTTTTT+CGG - tig0040952:11912-11931 Msa1460530:intron 10.0%
!!! TATTATATTTTGACAAAAAT+TGG - tig0040952:12006-12025 Msa1460530:intron 10.0%
!! AAATTATAAAAGAAAATTGA+AGG + tig0040952:12627-12646 None:intergenic 10.0%
!! CTTTCATAAATTAAATTAAA+TGG - tig0040952:13260-13279 Msa1460530:intron 10.0%
!!! ATTTCAATAAAAATTTTGTT+TGG + tig0040952:13321-13340 None:intergenic 10.0%
!!! TCGTAATGTTAAATTTTTTA+AGG - tig0040952:10072-10091 Msa1460530:three_prime_UTR 15.0%
!!! ATAAGTCTATGATTTTTATT+AGG - tig0040952:11176-11195 Msa1460530:CDS 15.0%
!! TATCAAAAAAACATTATGTA+CGG - tig0040952:11240-11259 Msa1460530:CDS 15.0%
!! TTAAAATGATATGTTAATAG+TGG + tig0040952:11547-11566 None:intergenic 15.0%
!! GACTATTTATTATAAATTCA+AGG - tig0040952:11643-11662 Msa1460530:intron 15.0%
!!! GATTTTAAAATAATTTGTAG+GGG + tig0040952:12115-12134 None:intergenic 15.0%
!!! GGATTTTAAAATAATTTGTA+GGG + tig0040952:12116-12135 None:intergenic 15.0%
!!! TGGATTTTAAAATAATTTGT+AGG + tig0040952:12117-12136 None:intergenic 15.0%
!! ATTCAGTTAAATAAGAAAAT+CGG - tig0040952:12508-12527 Msa1460530:intron 15.0%
!! AATTTCAATGAAAAAAATTC+TGG - tig0040952:12549-12568 Msa1460530:intron 15.0%
!!! AATGTTTTTACATTACAATA+CGG + tig0040952:13433-13452 None:intergenic 15.0%
!! ATGATTAATAAGTAAACTAA+AGG - tig0040952:13474-13493 Msa1460530:intron 15.0%
!!! AATTGATAGAAAGATTTTTT+TGG - tig0040952:13816-13835 Msa1460530:intron 15.0%
!!! TAATAAACAATATTGATAAC+AGG - tig0040952:14881-14900 Msa1460530:intron 15.0%
!! TTTCTCCTCTATTAAAAAAA+AGG - tig0040952:10188-10207 Msa1460530:three_prime_UTR 20.0%
!!! TTTTGCCTTTTTTTTAATAG+AGG + tig0040952:10196-10215 None:intergenic 20.0%
!!! TTTATGGTTATGTTTTGATT+TGG + tig0040952:10224-10243 None:intergenic 20.0%
!! ATCAAAAGAAATAAGAAAGT+AGG + tig0040952:10719-10738 None:intergenic 20.0%
!! AAAATGACAAGGAAAATTTA+TGG + tig0040952:10854-10873 None:intergenic 20.0%
!!! TTCTTTTGTTAGTAATTGTA+TGG + tig0040952:10944-10963 None:intergenic 20.0%
!! AATGACATCTTACATATTTA+AGG - tig0040952:11008-11027 Msa1460530:intron 20.0%
!!! ATATGAATGTTTTCAATGAT+AGG - tig0040952:11087-11106 Msa1460530:intron 20.0%
!! ATAGGATAGTTATGATTAAT+TGG - tig0040952:11105-11124 Msa1460530:intron 20.0%
!! TTATGAAATATTAATCTGCA+TGG - tig0040952:11216-11235 Msa1460530:CDS 20.0%
!! TATGAAATATTAATCTGCAT+GGG - tig0040952:11217-11236 Msa1460530:CDS 20.0%
!! ATCAAAAAAACATTATGTAC+GGG - tig0040952:11241-11260 Msa1460530:CDS 20.0%
!!! AAGATATTTTTGTTATCGTA+TGG - tig0040952:11725-11744 Msa1460530:intron 20.0%
!!! TTTTTTTCCGACAAAATTTA+AGG - tig0040952:11817-11836 Msa1460530:intron 20.0%
!!! TAGAAAACCTTAAATTTTGT+CGG + tig0040952:11827-11846 None:intergenic 20.0%
!! TAGTTAAAAAATTTAACGGT+AGG - tig0040952:11845-11864 Msa1460530:intron 20.0%
!!! ATTTTCAAATTTTAGTGATG+AGG - tig0040952:12054-12073 Msa1460530:intron 20.0%
!! ATTGACAAAAATGGTAAAAT+TGG + tig0040952:12137-12156 None:intergenic 20.0%
!!! TATTTTACTCAAGTTGATTT+CGG + tig0040952:12590-12609 None:intergenic 20.0%
!! TTGAGTAAAATAGTAACTTA+TGG - tig0040952:12598-12617 Msa1460530:intron 20.0%
!! AAGAGAAAAAGATATAATGT+AGG - tig0040952:12967-12986 Msa1460530:intron 20.0%
!!! TTTAATTTATGAAAGAACCA+AGG + tig0040952:13255-13274 None:intergenic 20.0%
!!! ATCATAGATCAATTTCATTT+TGG - tig0040952:13376-13395 Msa1460530:intron 20.0%
!!! TCATAGATCAATTTCATTTT+GGG - tig0040952:13377-13396 Msa1460530:intron 20.0%
!!! ATGTTTTTACATTACAATAC+GGG + tig0040952:13432-13451 None:intergenic 20.0%
!! AAGAATCAGAAAAATTGAAA+TGG - tig0040952:13528-13547 Msa1460530:intron 20.0%
!!! AATTTTACCCTTTATATCAT+TGG + tig0040952:13600-13619 None:intergenic 20.0%
!! AAAAAAATTGAAAAGTTGTG+AGG + tig0040952:13865-13884 None:intergenic 20.0%
!! TATGAACTGGTAATTAAAAT+TGG + tig0040952:14191-14210 None:intergenic 20.0%
!!! TTATGCAATATTTTATGAAC+TGG + tig0040952:14204-14223 None:intergenic 20.0%
!! AAATATTGCATAATATTCAG+AGG - tig0040952:14211-14230 Msa1460530:intron 20.0%
!! ATACAAATAGTTCAATAACT+CGG + tig0040952:15359-15378 None:intergenic 20.0%
!! AGTTATTGAACTATTTGTAT+TGG - tig0040952:15359-15378 Msa1460530:CDS 20.0%
!! AAGTAAGTTAAGTAAGAAAA+AGG - tig0040952:15714-15733 Msa1460530:five_prime_UTR 20.0%
!! AGTAAGTTAAGTAAGAAAAA+GGG - tig0040952:15715-15734 Msa1460530:five_prime_UTR 20.0%
! AGTAACTTTACTATCTATCA+CGG - tig0040952:10095-10114 Msa1460530:three_prime_UTR 25.0%
! AATAATATTAGGATTCACGT+TGG + tig0040952:10523-10542 None:intergenic 25.0%
! TCAAGAACTGCAATAATATT+AGG + tig0040952:10534-10553 None:intergenic 25.0%
! TTGAATTTACGGGAAATATT+AGG - tig0040952:10634-10653 Msa1460530:CDS 25.0%
! TGAATTTACGGGAAATATTA+GGG - tig0040952:10635-10654 Msa1460530:CDS 25.0%
! AAAAGAAATAAGAAAGTAGG+TGG + tig0040952:10716-10735 None:intergenic 25.0%
! ATTTGAACAACAAAATGACA+AGG + tig0040952:10865-10884 None:intergenic 25.0%
!!! CAAATGTATCTTTAGTTTGT+CGG - tig0040952:10880-10899 Msa1460530:CDS 25.0%
! TATTAGGAAAATTATGTCGA+AGG - tig0040952:11192-11211 Msa1460530:CDS 25.0%
! CTGAGACAAATTGTAAAAAA+AGG - tig0040952:11265-11284 Msa1460530:CDS 25.0%
! AAAAAAAACTTTCCTATGGT+GGG + tig0040952:12225-12244 None:intergenic 25.0%
! TTGAGAGAATGTTCTTAAAT+GGG + tig0040952:12359-12378 None:intergenic 25.0%
! TTTGAGAGAATGTTCTTAAA+TGG + tig0040952:12360-12379 None:intergenic 25.0%
! TGATTATGATTGTATTTCAC+CGG + tig0040952:12428-12447 None:intergenic 25.0%
! TGAAAAAAATCTGTGTTCAT+GGG - tig0040952:12922-12941 Msa1460530:intron 25.0%
!! CATAGATCAATTTCATTTTG+GGG - tig0040952:13378-13397 Msa1460530:intron 25.0%
! GTGAAATCCAATGATATAAA+GGG - tig0040952:13590-13609 Msa1460530:intron 25.0%
!! AGATTTTCTTCTTACTTGTA+GGG - tig0040952:13621-13640 Msa1460530:intron 25.0%
! TCGAGAGATTTCAAATAATA+CGG + tig0040952:13770-13789 None:intergenic 25.0%
! AATCTTTCTATCAATTGTCA+TGG + tig0040952:13812-13831 None:intergenic 25.0%
!! AACTTTATTTGCGAGTTTAA+AGG - tig0040952:13937-13956 Msa1460530:intron 25.0%
!! ACTTTATTTGCGAGTTTAAA+GGG - tig0040952:13938-13957 Msa1460530:intron 25.0%
!! ATATGACTGTATTTCTATTG+TGG + tig0040952:14243-14262 None:intergenic 25.0%
! TACAACTTCATTAAACAACA+TGG - tig0040952:14683-14702 Msa1460530:intron 25.0%
!! TTTTCACATCATTATTTGCT+GGG + tig0040952:14831-14850 None:intergenic 25.0%
!! TTTTTCACATCATTATTTGC+TGG + tig0040952:14832-14851 None:intergenic 25.0%
!! AACAATATTGATAACAGGTA+AGG - tig0040952:14886-14905 Msa1460530:intron 25.0%
! AGAGTTGGAACTAATAAATT+CGG - tig0040952:15123-15142 Msa1460530:CDS 25.0%
!! AACTATTTGTATTGGTCTAA+TGG - tig0040952:15367-15386 Msa1460530:CDS 25.0%
!! ACTATTTGTATTGGTCTAAT+GGG - tig0040952:15368-15387 Msa1460530:CDS 25.0%
! GTCGGTATGATTTAATTAAA+GGG - tig0040952:15485-15504 Msa1460530:five_prime_UTR 25.0%
! TCGGTATGATTTAATTAAAG+GGG - tig0040952:15486-15505 Msa1460530:five_prime_UTR 25.0%
! TATGATTTAATTAAAGGGGA+TGG - tig0040952:15490-15509 Msa1460530:five_prime_UTR 25.0%
!!! GGTTATGTTTTGATTTGGTT+TGG + tig0040952:10219-10238 None:intergenic 30.0%
TAATCTAACCTGTCTGATAA+GGG + tig0040952:10400-10419 None:intergenic 30.0%
ATAATCTAACCTGTCTGATA+AGG + tig0040952:10401-10420 None:intergenic 30.0%
!!! AAACTTTTTCAGAACACGAA+TGG - tig0040952:10441-10460 Msa1460530:CDS 30.0%
! TGTTCCTAGTGTTGAATTTA+CGG - tig0040952:10623-10642 Msa1460530:CDS 30.0%
TTTGCAGTTTCATACATTCA+TGG + tig0040952:10826-10845 None:intergenic 30.0%
GAGATATTATTTCAACTGCA+TGG + tig0040952:11388-11407 None:intergenic 30.0%
!! TTTTTGTTATCGTATGGACT+AGG - tig0040952:11731-11750 Msa1460530:intron 30.0%
GTGAAGTCAATTGACAAAAA+TGG + tig0040952:12146-12165 None:intergenic 30.0%
GAAAAAAAACTTTCCTATGG+TGG + tig0040952:12226-12245 None:intergenic 30.0%
GGTGAAAAAAAACTTTCCTA+TGG + tig0040952:12229-12248 None:intergenic 30.0%
! TTTTCACCGTTAGATTAAAG+AGG - tig0040952:12241-12260 Msa1460530:intron 30.0%
TTAAATGAGATTGCTGAAAG+AGG + tig0040952:12336-12355 None:intergenic 30.0%
GAAATTGCAACAATCATCAT+AGG + tig0040952:12535-12554 None:intergenic 30.0%
AAGTGATATATAGCTGAAAG+CGG + tig0040952:12660-12679 None:intergenic 30.0%
GAGAAGTAGCATGTAATTTA+TGG - tig0040952:12771-12790 Msa1460530:intron 30.0%
AAGTAGCATGTAATTTATGG+AGG - tig0040952:12774-12793 Msa1460530:intron 30.0%
!!! GAGGTTTTAGATAATTGAGA+AGG - tig0040952:12793-12812 Msa1460530:intron 30.0%
GTTTCACAATATACTTGGAA+AGG - tig0040952:12868-12887 Msa1460530:intron 30.0%
!!! ACAGATTTTTTTCACAGATC+TGG + tig0040952:12916-12935 None:intergenic 30.0%
GTGAAAAAAATCTGTGTTCA+TGG - tig0040952:12921-12940 Msa1460530:intron 30.0%
GAAAAAAATCTGTGTTCATG+GGG - tig0040952:12923-12942 Msa1460530:intron 30.0%
AGTGATCCTCTTTAATCTAA+TGG - tig0040952:13007-13026 Msa1460530:intron 30.0%
! AAACTTTTGGCACAGAAAAT+GGG + tig0040952:13089-13108 None:intergenic 30.0%
GAGATTTATTCACAAATACC+AGG + tig0040952:13112-13131 None:intergenic 30.0%
ATTTGTACCAACATAGTTAC+AGG + tig0040952:13201-13220 None:intergenic 30.0%
! AACAGCTTTGTAGAATAAAG+AGG - tig0040952:13352-13371 Msa1460530:intron 30.0%
TACAATACGGGAAAGAATAA+TGG + tig0040952:13420-13439 None:intergenic 30.0%
ATTCGTAGATGCAAAATTGA+AGG - tig0040952:13450-13469 Msa1460530:intron 30.0%
CAGAAAAATTGAAATGGTGA+AGG - tig0040952:13534-13553 Msa1460530:intron 30.0%
GGTGAAATCCAATGATATAA+AGG - tig0040952:13589-13608 Msa1460530:intron 30.0%
! GAGATTTTCTTCTTACTTGT+AGG - tig0040952:13620-13639 Msa1460530:intron 30.0%
! GATTTTCTTCTTACTTGTAG+GGG - tig0040952:13622-13641 Msa1460530:intron 30.0%
AGTATAAGTGTATGGGTATA+TGG - tig0040952:13649-13668 Msa1460530:intron 30.0%
ATGGTATAATTTCCTAGTGA+TGG - tig0040952:13668-13687 Msa1460530:intron 30.0%
CAAAATATCCCATTGTTTCA+AGG - tig0040952:13702-13721 Msa1460530:intron 30.0%
AATACAAGCCTTGAAACAAT+GGG + tig0040952:13713-13732 None:intergenic 30.0%
AAATACAAGCCTTGAAACAA+TGG + tig0040952:13714-13733 None:intergenic 30.0%
CGAGAGATTTCAAATAATAC+GGG + tig0040952:13769-13788 None:intergenic 30.0%
! TATTTGAAATCTCTCGACTT+TGG - tig0040952:13773-13792 Msa1460530:intron 30.0%
! TCTCGACTTTGGTATATTTT+TGG - tig0040952:13784-13803 Msa1460530:intron 30.0%
! CTCGACTTTGGTATATTTTT+GGG - tig0040952:13785-13804 Msa1460530:intron 30.0%
AAATTGAAAAGTTGTGAGGA+TGG + tig0040952:13861-13880 None:intergenic 30.0%
! CTTTATTTGCGAGTTTAAAG+GGG - tig0040952:13939-13958 Msa1460530:intron 30.0%
TTAGTAAAAGGAAGGAGTAA+AGG - tig0040952:13974-13993 Msa1460530:intron 30.0%
! TGAGTTGACATAAAAACTCT+AGG - tig0040952:14032-14051 Msa1460530:intron 30.0%
GAGTTGACATAAAAACTCTA+GGG - tig0040952:14033-14052 Msa1460530:intron 30.0%
AAATGTTTCCGAAAACCAAA+CGG + tig0040952:14060-14079 None:intergenic 30.0%
! CTGTATTTCTATTGTGGATT+AGG + tig0040952:14237-14256 None:intergenic 30.0%
ACTTTGCTTCAAAATGTTCA+TGG + tig0040952:14339-14358 None:intergenic 30.0%
! ATCAAACCTGGACATATTTT+TGG - tig0040952:14385-14404 Msa1460530:intron 30.0%
GTTGTTTAATGAAGTTGTAG+AGG + tig0040952:14682-14701 None:intergenic 30.0%
! TTTCACATCATTATTTGCTG+GGG + tig0040952:14830-14849 None:intergenic 30.0%
!! ACTGAGTTGAAAATCTTTTC+TGG + tig0040952:15203-15222 None:intergenic 30.0%
TGAACCAGAACAATTTAAAC+CGG - tig0040952:15309-15328 Msa1460530:CDS 30.0%
CGTCGGTATGATTTAATTAA+AGG - tig0040952:15484-15503 Msa1460530:five_prime_UTR 30.0%
CAGACAGGTTAGATTATTTC+TGG - tig0040952:10404-10423 Msa1460530:CDS 35.0%
!!! TGAAAAAGTTTTCTGGCTTC+TGG + tig0040952:10432-10451 None:intergenic 35.0%
!!! CGTGTTCTGAAAAAGTTTTC+TGG + tig0040952:10439-10458 None:intergenic 35.0%
TTTCTCTCACCTCTTTGATA+TGG - tig0040952:10563-10582 Msa1460530:CDS 35.0%
! GAACATCTCTTTTGTCAACA+AGG + tig0040952:10590-10609 None:intergenic 35.0%
GACAAAAGAGATGTTCTAGT+TGG - tig0040952:10594-10613 Msa1460530:CDS 35.0%
! GTTCCTAGTGTTGAATTTAC+GGG - tig0040952:10624-10643 Msa1460530:CDS 35.0%
TTTCCCGTAAATTCAACACT+AGG + tig0040952:10630-10649 None:intergenic 35.0%
TTTACGGGAAATATTAGGGT+TGG - tig0040952:10639-10658 Msa1460530:CDS 35.0%
TTATGAACTTTCTGACTCAG+TGG - tig0040952:10772-10791 Msa1460530:CDS 35.0%
GTGTAAGTTGTCACTATATC+TGG + tig0040952:11872-11891 None:intergenic 35.0%
! AGTATAAGTGTAGGGGTATA+TGG + tig0040952:12088-12107 None:intergenic 35.0%
ACCCAGAAAATGTATTCTGT+GGG + tig0040952:12172-12191 None:intergenic 35.0%
AGTGCTCCTCTTTAATCTAA+CGG + tig0040952:12250-12269 None:intergenic 35.0%
CTCAAATACCTTATACTCCA+TGG - tig0040952:12374-12393 Msa1460530:intron 35.0%
ATTGTATTTCACCGGAAAGA+GGG + tig0040952:12420-12439 None:intergenic 35.0%
AGTATATTGTGAAACATCGC+TGG + tig0040952:12863-12882 None:intergenic 35.0%
GCGATGTTTCACAATATACT+TGG - tig0040952:12863-12882 Msa1460530:intron 35.0%
CAATATACTTGGAAAGGCTT+TGG - tig0040952:12874-12893 Msa1460530:intron 35.0%
AGATATAATGTAGGCAGACT+AGG - tig0040952:12976-12995 Msa1460530:intron 35.0%
GATATAATGTAGGCAGACTA+GGG - tig0040952:12977-12996 Msa1460530:intron 35.0%
TTCTGGCCATTAGATTAAAG+AGG + tig0040952:13016-13035 None:intergenic 35.0%
AGAATCTACTTTCCTATGGT+GGG - tig0040952:13032-13051 Msa1460530:intron 35.0%
! GAAACTTTTGGCACAGAAAA+TGG + tig0040952:13090-13109 None:intergenic 35.0%
! CACAAATACCAGGAAACTTT+TGG + tig0040952:13102-13121 None:intergenic 35.0%
ATCCATTAATTACAACGCCT+TGG - tig0040952:13235-13254 Msa1460530:intron 35.0%
!! AACCAAGGCGTTGTAATTAA+TGG + tig0040952:13240-13259 None:intergenic 35.0%
AATTGAAATGGTGAAGGAGA+AGG - tig0040952:13540-13559 Msa1460530:intron 35.0%
!! AGAGATGGAATCAGTTTTGT+GGG - tig0040952:13566-13585 Msa1460530:intron 35.0%
! GGGTGAAAGTATAAGTGTAT+GGG - tig0040952:13642-13661 Msa1460530:intron 35.0%
! TGGGATATTTTGCTTGTTTG+TGG + tig0040952:13694-13713 None:intergenic 35.0%
AAAACACACCACCATAATCT+AGG + tig0040952:13744-13763 None:intergenic 35.0%
! AGGAGAGGACTTTTAGTAAA+AGG - tig0040952:13962-13981 Msa1460530:intron 35.0%
! GAGGACTTTTAGTAAAAGGA+AGG - tig0040952:13966-13985 Msa1460530:intron 35.0%
AAGGAAGGAGTAAAGGAAAA+TGG - tig0040952:13981-14000 Msa1460530:intron 35.0%
TCAACTCATACTCAAGTTAG+GGG + tig0040952:14020-14039 None:intergenic 35.0%
GTCAACTCATACTCAAGTTA+GGG + tig0040952:14021-14040 None:intergenic 35.0%
TGTCAACTCATACTCAAGTT+AGG + tig0040952:14022-14041 None:intergenic 35.0%
GAAAATATCGATAACGTGCT+TGG - tig0040952:14160-14179 Msa1460530:intron 35.0%
TGAAGCAAAGTTCAAGCATA+TGG - tig0040952:14348-14367 Msa1460530:intron 35.0%
GAAGCAAAGTTCAAGCATAT+GGG - tig0040952:14349-14368 Msa1460530:intron 35.0%
TTTGGTCCAAAAATATGTCC+AGG + tig0040952:14394-14413 None:intergenic 35.0%
!! TAGACAGTGTTGCTTCAATT+TGG + tig0040952:14412-14431 None:intergenic 35.0%
TGAACAGAAATTTCTGCAGT+GGG + tig0040952:14460-14479 None:intergenic 35.0%
GGTAAGGAAGTGATAAAAAG+TGG - tig0040952:14902-14921 Msa1460530:intron 35.0%
GGAAGTGATAAAAAGTGGAA+CGG - tig0040952:14907-14926 Msa1460530:intron 35.0%
ATAAAAAGTGGAACGGAGTT+CGG - tig0040952:14914-14933 Msa1460530:intron 35.0%
!!! CACAACTTGCTTTTTGTGTT+GGG - tig0040952:14959-14978 Msa1460530:intron 35.0%
TTTGCAAGAGAAGTTGAGAA+AGG - tig0040952:15054-15073 Msa1460530:intron 35.0%
! GTTTGACTCGTTAAAAGAGT+TGG - tig0040952:15108-15127 Msa1460530:intron 35.0%
GTTGGAACTAATAAATTCGG+TGG - tig0040952:15126-15145 Msa1460530:CDS 35.0%
AAGAAGGGTGAGTTATTATG+TGG - tig0040952:15247-15266 Msa1460530:CDS 35.0%
AGAAGGGTGAGTTATTATGT+GGG - tig0040952:15248-15267 Msa1460530:CDS 35.0%
GTTTCAGAAGCTTGTAATGA+GGG - tig0040952:15270-15289 Msa1460530:CDS 35.0%
CAGAACAATTTAAACCGGAA+CGG - tig0040952:15314-15333 Msa1460530:CDS 35.0%
GAGAAGAAGAGAAGAGAGTT+CGG + tig0040952:10259-10278 None:intergenic 40.0%
! GATTCACGTTGGTGAAGAAA+GGG + tig0040952:10512-10531 None:intergenic 40.0%
CAACAAGGTCCATATCAAAG+AGG + tig0040952:10575-10594 None:intergenic 40.0%
TTCTGAACCTCAACATGCTA+AGG - tig0040952:10677-10696 Msa1460530:CDS 40.0%
!! TGTTATCGTATGGACTAGGA+TGG - tig0040952:11735-11754 Msa1460530:intron 40.0%
! GGGTGAAAGTATAAGTGTAG+GGG + tig0040952:12095-12114 None:intergenic 40.0%
! GGGGTGAAAGTATAAGTGTA+GGG + tig0040952:13641-13660 None:intergenic 40.0%
! AGGGGTGAAAGTATAAGTGT+AGG + tig0040952:13640-13659 None:intergenic 40.0%
CCAGAAAATGTATTCTGTGG+GGG + tig0040952:12170-12189 None:intergenic 40.0%
CCCAGAAAATGTATTCTGTG+GGG + tig0040952:12171-12190 None:intergenic 40.0%
! CCCCACAGAATACATTTTCT+GGG - tig0040952:12168-12187 Msa1460530:intron 40.0%
CACCCAGAAAATGTATTCTG+TGG + tig0040952:12173-12192 None:intergenic 40.0%
! CACAGAATACATTTTCTGGG+TGG - tig0040952:12171-12190 Msa1460530:intron 40.0%
! ACATTTTCTGGGTGGCATTT+AGG - tig0040952:12179-12198 Msa1460530:intron 40.0%
! CATTTTCTGGGTGGCATTTA+GGG - tig0040952:12180-12199 Msa1460530:intron 40.0%
ATGAGATTGCTGAAAGAGGA+GGG + tig0040952:12332-12351 None:intergenic 40.0%
AATGAGATTGCTGAAAGAGG+AGG + tig0040952:12333-12352 None:intergenic 40.0%
! GTTTTCTGCCATGGAGTATA+AGG + tig0040952:12385-12404 None:intergenic 40.0%
TTGTATTTCACCGGAAAGAG+GGG + tig0040952:12419-12438 None:intergenic 40.0%
GATTGTATTTCACCGGAAAG+AGG + tig0040952:12421-12440 None:intergenic 40.0%
TAATTGAGAAGGAGATGCAG+TGG - tig0040952:12804-12823 Msa1460530:intron 40.0%
AATTGAGAAGGAGATGCAGT+GGG - tig0040952:12805-12824 Msa1460530:intron 40.0%
CACCATAGGAAAGTAGATTC+TGG + tig0040952:13033-13052 None:intergenic 40.0%
CAGAATCTACTTTCCTATGG+TGG - tig0040952:13031-13050 Msa1460530:intron 40.0%
CAGAAAATGGGTGGCATTTA+GGG + tig0040952:13077-13096 None:intergenic 40.0%
ACAGAAAATGGGTGGCATTT+AGG + tig0040952:13078-13097 None:intergenic 40.0%
TTTCTGTGCCAAAAGTTTCC+TGG - tig0040952:13091-13110 Msa1460530:intron 40.0%
ATAATTGGGGAGTTGAACAG+AGG + tig0040952:13170-13189 None:intergenic 40.0%
TACAGGCATGGGAGATAATT+GGG + tig0040952:13184-13203 None:intergenic 40.0%
TTACAGGCATGGGAGATAAT+TGG + tig0040952:13185-13204 None:intergenic 40.0%
ACCAACATAGTTACAGGCAT+GGG + tig0040952:13195-13214 None:intergenic 40.0%
TACCAACATAGTTACAGGCA+TGG + tig0040952:13196-13215 None:intergenic 40.0%
! GAGAGATGGAATCAGTTTTG+TGG - tig0040952:13565-13584 Msa1460530:intron 40.0%
!! GAGATGGAATCAGTTTTGTG+GGG - tig0040952:13567-13586 Msa1460530:intron 40.0%
!! AGATGGAATCAGTTTTGTGG+GGG - tig0040952:13568-13587 Msa1460530:intron 40.0%
! GGGGTGAAAGTATAAGTGTA+TGG - tig0040952:13641-13660 Msa1460530:intron 40.0%
ATTTAGCCCAGCCTAGATTA+TGG - tig0040952:13730-13749 Msa1460530:intron 40.0%
AGGATGGAAAGACAAATGTG+TGG + tig0040952:13845-13864 None:intergenic 40.0%
TATTTGCGAGTTTAAAGGGG+AGG - tig0040952:13942-13961 Msa1460530:intron 40.0%
!! TAAAAACTCTAGGGTCCGTT+TGG - tig0040952:14042-14061 Msa1460530:intron 40.0%
TCACGTAGTATACTTCATGC+AGG - tig0040952:14301-14320 Msa1460530:intron 40.0%
ACCAGAACTGATATCAAACC+TGG - tig0040952:14373-14392 Msa1460530:intron 40.0%
TCCAGGTTTGATATCAGTTC+TGG + tig0040952:14377-14396 None:intergenic 40.0%
GAACAGAAATTTCTGCAGTG+GGG + tig0040952:14459-14478 None:intergenic 40.0%
GTGAACAGAAATTTCTGCAG+TGG + tig0040952:14461-14480 None:intergenic 40.0%
AATTTCTTCGAGTGGTTGGA+TGG + tig0040952:14606-14625 None:intergenic 40.0%
GGAAAATTTCTTCGAGTGGT+TGG + tig0040952:14610-14629 None:intergenic 40.0%
TGGAGGAAAATTTCTTCGAG+TGG + tig0040952:14614-14633 None:intergenic 40.0%
CATAAGGGTAAGAGAAGGAA+TGG + tig0040952:14634-14653 None:intergenic 40.0%
! AAGAGCATAAGGGTAAGAGA+AGG + tig0040952:14639-14658 None:intergenic 40.0%
TAAAAAGTGGAACGGAGTTC+GGG - tig0040952:14915-14934 Msa1460530:intron 40.0%
CCAACACAAAAAGCAAGTTG+TGG + tig0040952:14961-14980 None:intergenic 40.0%
!!! CCACAACTTGCTTTTTGTGT+TGG - tig0040952:14958-14977 Msa1460530:intron 40.0%
GTGTTGGGTTTCAACTCATA+TGG - tig0040952:14974-14993 Msa1460530:intron 40.0%
TTGGGTTTCAACTCATATGG+TGG - tig0040952:14977-14996 Msa1460530:intron 40.0%
TGGGTTTCAACTCATATGGT+GGG - tig0040952:14978-14997 Msa1460530:intron 40.0%
TCTCAACTTCTCTTGCAAAC+CGG + tig0040952:15053-15072 None:intergenic 40.0%
AGAAAGGAAGCAAGAGAGAA+AGG - tig0040952:15070-15089 Msa1460530:intron 40.0%
GGTTTCAGAAGCTTGTAATG+AGG - tig0040952:15269-15288 Msa1460530:CDS 40.0%
CGTTCCGGTTTAAATTGTTC+TGG + tig0040952:15316-15335 None:intergenic 40.0%
TTCTCTTTAGTGAACCGTTC+CGG + tig0040952:15331-15350 None:intergenic 40.0%
GAACGGTTCACTAAAGAGAA+AGG - tig0040952:15331-15350 Msa1460530:CDS 40.0%
CACTGTTTATTGGACACAGT+TGG + tig0040952:15409-15428 None:intergenic 40.0%
CTTACCTGCACACTGTTTAT+TGG + tig0040952:15419-15438 None:intergenic 40.0%
CAATAAACAGTGTGCAGGTA+AGG - tig0040952:15417-15436 Msa1460530:exon 40.0%
TTCCATTACTGCCTTACAGA+AGG - tig0040952:15516-15535 Msa1460530:five_prime_UTR 40.0%
! TCTTCATTTGGCCTTCTGTA+AGG + tig0040952:15530-15549 None:intergenic 40.0%
AGAAGGCCAAATGAAGAGTT+AGG - tig0040952:15533-15552 Msa1460530:five_prime_UTR 40.0%
GAAGGCCAAATGAAGAGTTA+GGG - tig0040952:15534-15553 Msa1460530:five_prime_UTR 40.0%
ACCAACCCTAACTCTTCATT+TGG + tig0040952:15542-15561 None:intergenic 40.0%
AAGAAGAGAAGAGAGTTCGG+TGG + tig0040952:10256-10275 None:intergenic 45.0%
TCTGATAAGGGACCTAGCAA+TGG + tig0040952:10388-10407 None:intergenic 45.0%
TTGGTGAAGAAAGGGAACGT+GGG + tig0040952:10504-10523 None:intergenic 45.0%
! GGATTCACGTTGGTGAAGAA+AGG + tig0040952:10513-10532 None:intergenic 45.0%
AGTGGTACCTTAGCATGTTG+AGG + tig0040952:10687-10706 None:intergenic 45.0%
!! GAAAGTAGGTGGTGTCATAG+TGG + tig0040952:10705-10724 None:intergenic 45.0%
!! TATCGTATGGACTAGGATGG+TGG - tig0040952:11738-11757 Msa1460530:intron 45.0%
!! ATCGTATGGACTAGGATGGT+GGG - tig0040952:11739-11758 Msa1460530:intron 45.0%
CAACTTACACTAGACGCTCA+AGG - tig0040952:11882-11901 Msa1460530:intron 45.0%
! CCCCCACAGAATACATTTTC+TGG - tig0040952:12167-12186 Msa1460530:intron 45.0%
GGGAAAGAATTTCCCACCAT+AGG - tig0040952:12210-12229 Msa1460530:intron 45.0%
! GCTTAAAGGGTTTTCTGCCA+TGG + tig0040952:12394-12413 None:intergenic 45.0%
TGTATTTCACCGGAAAGAGG+GGG + tig0040952:12418-12437 None:intergenic 45.0%
ATTGAGAAGGAGATGCAGTG+GGG - tig0040952:12806-12825 Msa1460530:intron 45.0%
GGCCAGAATCTACTTTCCTA+TGG - tig0040952:13028-13047 Msa1460530:intron 45.0%
GGGAAAGAATTTCCCACCAT+AGG + tig0040952:12210-12229 None:intergenic 45.0%
! AAATGGGTGGCATTTAGGGT+GGG + tig0040952:13073-13092 None:intergenic 45.0%
AAAATGGGTGGCATTTAGGG+TGG + tig0040952:13074-13093 None:intergenic 45.0%
! CTTTTGGCACAGAAAATGGG+TGG + tig0040952:13086-13105 None:intergenic 45.0%
ACAGGCATGGGAGATAATTG+GGG + tig0040952:13183-13202 None:intergenic 45.0%
TCCCATGCCTGTAACTATGT+TGG - tig0040952:13191-13210 Msa1460530:intron 45.0%
TGAAGGAGAAGGAAGAGAGA+TGG - tig0040952:13551-13570 Msa1460530:intron 45.0%
ACACCACCATAATCTAGGCT+GGG + tig0040952:13739-13758 None:intergenic 45.0%
!!! TCTAGGGTCCGTTTGGTTTT+CGG - tig0040952:14049-14068 Msa1460530:intron 45.0%
CTCTGGCAAGTACTTTGCTT+AGG + tig0040952:14487-14506 None:intergenic 45.0%
! TTTGGGATCAAGGGAAGGAT+CGG + tig0040952:14510-14529 None:intergenic 45.0%
!!! TTCGGCGATTTTGGGATCAA+GGG + tig0040952:14519-14538 None:intergenic 45.0%
!!! ATTCGGCGATTTTGGGATCA+AGG + tig0040952:14520-14539 None:intergenic 45.0%
AAGGGTAAGAGAAGGAATGG+AGG + tig0040952:14631-14650 None:intergenic 45.0%
TACCCTTATGCTCTTGTCAG+TGG - tig0040952:14644-14663 Msa1460530:intron 45.0%
! CTCCACTGACAAGAGCATAA+GGG + tig0040952:14649-14668 None:intergenic 45.0%
! TCTCCACTGACAAGAGCATA+AGG + tig0040952:14650-14669 None:intergenic 45.0%
AACTTCTCTTGCAAACCGGT+TGG + tig0040952:15049-15068 None:intergenic 45.0%
AAGGAAGCAAGAGAGAAAGG+CGG - tig0040952:15073-15092 Msa1460530:intron 45.0%
AGAAAGGCGGTTCAACTCTT+GGG - tig0040952:15086-15105 Msa1460530:intron 45.0%
CAAATTGAAGTGGAACCGGT+GGG + tig0040952:15174-15193 None:intergenic 45.0%
CGACCAAATTGAAGTGGAAC+CGG + tig0040952:15178-15197 None:intergenic 45.0%
TCCGCGTTCAATGTGAAGAA+GGG - tig0040952:15232-15251 Msa1460530:CDS 45.0%
ACCCTTCTTCACATTGAACG+CGG + tig0040952:15236-15255 None:intergenic 45.0%
! TCTGGTTCATCAAACACGAC+CGG + tig0040952:15298-15317 None:intergenic 45.0%
GTGTCCAATAAACAGTGTGC+AGG - tig0040952:15412-15431 Msa1460530:CDS 45.0%
! TTGTGGCACACTTGTTACGT+CGG - tig0040952:15467-15486 Msa1460530:five_prime_UTR 45.0%
GCCAAATGAAGAGTTAGGGT+TGG - tig0040952:15538-15557 Msa1460530:five_prime_UTR 45.0%
!!! TTTTACAATTATTATTTTTT+TGG + tig0040952:11687-11706 None:intergenic 5.0%
!!! TTCTTTAAAAATATTATTTT+TGG - tig0040952:13885-13904 Msa1460530:intron 5.0%
TCGGTGGAGGTCACACTTTA+TGG + tig0040952:10240-10259 None:intergenic 50.0%
! AAGAGAAGAGAGTTCGGTGG+AGG + tig0040952:10253-10272 None:intergenic 50.0%
TGCTTTCGGTGGAGTTGCTA+GGG + tig0040952:10317-10336 None:intergenic 50.0%
TTGCTTTCGGTGGAGTTGCT+AGG + tig0040952:10318-10337 None:intergenic 50.0%
TAGCAACTCCACCGAAAGCA+AGG - tig0040952:10317-10336 Msa1460530:CDS 50.0%
TGCTAGGTCCCTTATCAGAC+AGG - tig0040952:10389-10408 Msa1460530:CDS 50.0%
ACGTGGGTGGAACATTGGTA+CGG + tig0040952:10488-10507 None:intergenic 50.0%
! GTTGGTGAAGAAAGGGAACG+TGG + tig0040952:10505-10524 None:intergenic 50.0%
TTTCTGGGTGGCATTTAGGG+TGG - tig0040952:12183-12202 Msa1460530:intron 50.0%
! TTCTGGGTGGCATTTAGGGT+GGG - tig0040952:12184-12203 Msa1460530:intron 50.0%
GGAAAGAGGGGGAGCTTAAA+GGG + tig0040952:12407-12426 None:intergenic 50.0%
CTTTAAGCTCCCCCTCTTTC+CGG - tig0040952:12406-12425 Msa1460530:intron 50.0%
! GTGGCATTTAGGGTGGGTAA+GGG + tig0040952:13067-13086 None:intergenic 50.0%
GCTTGTTTGTGGCCATCACT+AGG + tig0040952:13683-13702 None:intergenic 50.0%
TAGCCCAGCCTAGATTATGG+TGG - tig0040952:13733-13752 Msa1460530:intron 50.0%
CACACCACCATAATCTAGGC+TGG + tig0040952:13740-13759 None:intergenic 50.0%
!!! GCGATTTTGGGATCAAGGGA+AGG + tig0040952:14515-14534 None:intergenic 50.0%
GATCCCAAAATCGCCGAATC+AGG - tig0040952:14521-14540 Msa1460530:intron 50.0%
!!! GAGCCTGATTCGGCGATTTT+GGG + tig0040952:14527-14546 None:intergenic 50.0%
GCTCCTCCATGCTCAACAAA+TGG - tig0040952:14543-14562 Msa1460530:intron 50.0%
! GAGCCATTTGTTGAGCATGG+AGG + tig0040952:14549-14568 None:intergenic 50.0%
! TGCGAGCCATTTGTTGAGCA+TGG + tig0040952:14552-14571 None:intergenic 50.0%
! CTTCTACCGACTGTGAGTGT+CGG - tig0040952:14578-14597 Msa1460530:intron 50.0%
AGCATAACGAACGGTCCAAC+CGG - tig0040952:15031-15050 Msa1460530:intron 50.0%
GAGAAAGGCGGTTCAACTCT+TGG - tig0040952:15085-15104 Msa1460530:intron 50.0%
CCAAATTGAAGTGGAACCGG+TGG + tig0040952:15175-15194 None:intergenic 50.0%
!! CCACCGGTTCCACTTCAATT+TGG - tig0040952:15172-15191 Msa1460530:CDS 50.0%
! CTGGCTCGACCAAATTGAAG+TGG + tig0040952:15184-15203 None:intergenic 50.0%
CTCCGCGTTCAATGTGAAGA+AGG - tig0040952:15231-15250 Msa1460530:CDS 50.0%
GAAGCTTGTAATGAGGGACC+CGG - tig0040952:15276-15295 Msa1460530:CDS 50.0%
CTGGTTCATCAAACACGACC+GGG + tig0040952:15297-15316 None:intergenic 50.0%
! TGGTCTAATGGGCCACAAAC+TGG - tig0040952:15379-15398 Msa1460530:CDS 50.0%
ACAGTTGGCGAACCAGTTTG+TGG + tig0040952:15394-15413 None:intergenic 50.0%
GGCCTTCTGTAAGGCAGTAA+TGG + tig0040952:15521-15540 None:intergenic 50.0%
!! TATCGGTGGTGGGAGTGACA+TGG + tig0040952:10284-10303 None:intergenic 55.0%
TTCGGTGGAGTTGCTAGGGA+CGG + tig0040952:10313-10332 None:intergenic 55.0%
TCCACCGAAAGCAAGGCCAA+CGG - tig0040952:10324-10343 Msa1460530:CDS 55.0%
!! AGCTCCGTTGGCCTTGCTTT+CGG + tig0040952:10331-10350 None:intergenic 55.0%
AGGGAACGTGGGTGGAACAT+TGG + tig0040952:10493-10512 None:intergenic 55.0%
GTGAAGAAAGGGAACGTGGG+TGG + tig0040952:10501-10520 None:intergenic 55.0%
! GTGGCATTTAGGGTGGGTGA+GGG - tig0040952:12190-12209 Msa1460530:intron 55.0%
AGAGGAGGGTGAGAGAGACA+TGG + tig0040952:12318-12337 None:intergenic 55.0%
CGGAAAGAGGGGGAGCTTAA+AGG + tig0040952:12408-12427 None:intergenic 55.0%
AAGGAGATGCAGTGGGGTGA+TGG - tig0040952:12812-12831 Msa1460530:intron 55.0%
! GGTGGCATTTAGGGTGGGTA+AGG + tig0040952:13068-13087 None:intergenic 55.0%
GCGAGTTTAAAGGGGAGGAG+AGG - tig0040952:13947-13966 Msa1460530:intron 55.0%
! ATCAAGGGAAGGATCGGCTC+TGG + tig0040952:14504-14523 None:intergenic 55.0%
!!! GGAGCCTGATTCGGCGATTT+TGG + tig0040952:14528-14547 None:intergenic 55.0%
GAGCATGGAGGAGCCTGATT+CGG + tig0040952:14537-14556 None:intergenic 55.0%
!! ATGGTGCCGACACTCACAGT+CGG + tig0040952:14587-14606 None:intergenic 55.0%
AACCCTGCGAATGAACCCAC+CGG - tig0040952:15156-15175 Msa1460530:CDS 55.0%
! AACCGGTGGGTTCATTCGCA+GGG + tig0040952:15161-15180 None:intergenic 55.0%
CACAATCAACGCAGCGGTGA+AGG + tig0040952:15452-15471 None:intergenic 55.0%
!! CTTCACCGCTGCGTTGATTG+TGG - tig0040952:15450-15469 Msa1460530:five_prime_UTR 55.0%
GTGTGCCACAATCAACGCAG+CGG + tig0040952:15458-15477 None:intergenic 55.0%
!! ACGGTGGTGGTATCGGTGGT+GGG + tig0040952:10294-10313 None:intergenic 60.0%
! GCTAGGGACGGTGGTGGTAT+CGG + tig0040952:10301-10320 None:intergenic 60.0%
!! TCCGTTGGCCTTGCTTTCGG+TGG + tig0040952:10328-10347 None:intergenic 60.0%
GCTACCGATCCGGCAGATTC+CGG - tig0040952:10348-10367 Msa1460530:CDS 60.0%
CTACCGATCCGGCAGATTCC+GGG - tig0040952:10349-10368 Msa1460530:CDS 60.0%
CTTCCCGGAATCTGCCGGAT+CGG + tig0040952:10355-10374 None:intergenic 60.0%
AGATTCCGGGAAGCCACGGA+TGG - tig0040952:10362-10381 Msa1460530:CDS 60.0%
AATGGCCATCCGTGGCTTCC+CGG + tig0040952:10370-10389 None:intergenic 60.0%
AGCCACGGATGGCCATTGCT+AGG - tig0040952:10373-10392 Msa1460530:CDS 60.0%
GACCTAGCAATGGCCATCCG+TGG + tig0040952:10378-10397 None:intergenic 60.0%
! GGTGGCATTTAGGGTGGGTG+AGG - tig0040952:12189-12208 Msa1460530:intron 60.0%
! GAGATGCAGTGGGGTGATGG+AGG - tig0040952:12815-12834 Msa1460530:intron 60.0%
! GAACCGGTGGGTTCATTCGC+AGG + tig0040952:15162-15181 None:intergenic 60.0%
!! GACGGTGGTGGTATCGGTGG+TGG + tig0040952:10295-10314 None:intergenic 65.0%
! AGGGACGGTGGTGGTATCGG+TGG + tig0040952:10298-10317 None:intergenic 65.0%
GGAGTTGCTAGGGACGGTGG+TGG + tig0040952:10307-10326 None:intergenic 65.0%
GGTGGAGTTGCTAGGGACGG+TGG + tig0040952:10310-10329 None:intergenic 65.0%
GGCCAACGGAGCTACCGATC+CGG - tig0040952:10338-10357 Msa1460530:CDS 65.0%
TGCCGGATCGGTAGCTCCGT+TGG + tig0040952:10343-10362 None:intergenic 65.0%
CGTGGCTTCCCGGAATCTGC+CGG + tig0040952:10360-10379 None:intergenic 65.0%
CGGCAGATTCCGGGAAGCCA+CGG - tig0040952:10358-10377 Msa1460530:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0040952 gene 10029 15785 10029 ID=Msa1460530;Name=Msa1460530
tig0040952 mRNA 10029 15785 10029 ID=Msa1460530-mRNA-1;Parent=Msa1460530;Name=Msa1460530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=352|1|1|1|1|1|3|239|447
tig0040952 exon 10029 10911 10029 ID=Msa1460530-mRNA-1:exon:22787;Parent=Msa1460530-mRNA-1
tig0040952 exon 11110 11491 11110 ID=Msa1460530-mRNA-1:exon:22786;Parent=Msa1460530-mRNA-1
tig0040952 exon 15116 15785 15116 ID=Msa1460530-mRNA-1:exon:22785;Parent=Msa1460530-mRNA-1
tig0040952 five_prime_UTR 15434 15785 15434 ID=Msa1460530-mRNA-1:five_prime_utr;Parent=Msa1460530-mRNA-1
tig0040952 CDS 15116 15433 15116 ID=Msa1460530-mRNA-1:cds;Parent=Msa1460530-mRNA-1
tig0040952 CDS 11110 11491 11110 ID=Msa1460530-mRNA-1:cds;Parent=Msa1460530-mRNA-1
tig0040952 CDS 10268 10911 10268 ID=Msa1460530-mRNA-1:cds;Parent=Msa1460530-mRNA-1
tig0040952 three_prime_UTR 10029 10267 10029 ID=Msa1460530-mRNA-1:three_prime_utr;Parent=Msa1460530-mRNA-1
Gene Sequence

>Msa1460530

ATGGCCATTGCTAGGTCCCTTATCAGACAGGTTAGATTATTTCTGGTTCCAGAAGCCAGAAAACTTTTTCAGAACACGAATGGAAAGTACAAGAGTACTGTATTCCGTACCAATGTTCCACCCACGTTCCCTTTCTTCACCAACGTGAATCCTAATATTATTGCAGTTCTTGATTGTAAGTCTTTCTCTCACCTCTTTGATATGGACCTTGTTGACAAAAGAGATGTTCTAGTTGGAGATTTTGTTCCTAGTGTTGAATTTACGGGAAATATTAGGGTTGGTGTTTATCAAGATGTTTCTGAACCTCAACATGCTAAGGCAAAGAATTTCTCCATGAACATTTTGAAGCAAAGTTCAAGCATATGGGTACCAGAACTGATATCAAACCTGGACATATTTTTGGACCAAATTGAAGCAACACTGTCTAATTCTTCATCAGCAAGTTACTTCTCCCCACTGCAGAAATTTCTGTTCACGTTCCTAAGCAAAGTACTTGCCAGAGCCGATCCTTCCCTTGATCCCAAAATCGCCGAATCAGGCTCCTCCATGCTCAACAAATGGCTCGCAGTTCAGCTTCTACCGACTGTGAGTGTCGGCACCATCCAACCACTCGAAGAAATTTTCCTCCATTCCTTCTCTTACCCTTATGCTCTTGTCAGTGGAGACTACAAAAACCTCTACAACTTCATTAAACAACATGGTAAGGAAGTGATAAAAAGTGGAACGGAGTTCGGGTTGAGTGAAGATGAAGCAATCCACAACTTGCTTTTTGTGTTGGGTTTCAACTCATATGGTGGGTTTTCAATTTTCCTTCCAAAATTGATTGAGAGCATAACGAACGGTCCAACCGGTTTGCAAGAGAAGTTGAGAAAGGAAGCAAGAGAGAAAGGCGGTTCAACTCTTGGGTTTGACTCGTTAAAAGAGTTGGAACTAATAAATTCGGTGGTTTATGAAACCCTGCGAATGAACCCACCGGTTCCACTTCAATTTGGTCGAGCCAGAAAAGATTTTCAACTCAGTTCATATGACTCCGCGTTCAATGTGAAGAAGGGTGAGTTATTATGTGGGTTTCAGAAGCTTGTAATGAGGGACCCGGTCGTGTTTGATGAACCAGAACAATTTAAACCGGAACGGTTCACTAAAGAGAAAGGAGCCGAGTTATTGAACTATTTGTATTGGTCTAATGGGCCACAAACTGGTTCGCCAACTGTGTCCAATAAACAGTGTGCAGGTAAGGACATCGTGACCTTCACCGCTGCGTTGATTGTGGCACACTTGTTACGTCGGTATGATTTAATTAAAGGGGATGGTAGTTCCATTACTGCCTTACAGAAGGCCAAATGA

Protein sequence

>Msa1460530

MAIARSLIRQVRLFLVPEARKLFQNTNGKYKSTVFRTNVPPTFPFFTNVNPNIIAVLDCKSFSHLFDMDLVDKRDVLVGDFVPSVEFTGNIRVGVYQDVSEPQHAKAKNFSMNILKQSSSIWVPELISNLDIFLDQIEATLSNSSSASYFSPLQKFLFTFLSKVLARADPSLDPKIAESGSSMLNKWLAVQLLPTVSVGTIQPLEEIFLHSFSYPYALVSGDYKNLYNFIKQHGKEVIKSGTEFGLSEDEAIHNLLFVLGFNSYGGFSIFLPKLIESITNGPTGLQEKLRKEAREKGGSTLGFDSLKELELINSVVYETLRMNPPVPLQFGRARKDFQLSSYDSAFNVKKGELLCGFQKLVMRDPVVFDEPEQFKPERFTKEKGAELLNYLYWSNGPQTGSPTVSNKQCAGKDIVTFTAALIVAHLLRRYDLIKGDGSSITALQKAK*