Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299500 | XP_003609029.1 | 93.878 | 392 | 24 | 0 | 1 | 392 | 1 | 392 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299500 | G7JQV9 | 93.878 | 392 | 24 | 0 | 1 | 392 | 1 | 392 | 0.0 | 714 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030070 | Msa1299500 | 0.800296 | 1.540779e-48 | -8.615850e-47 |
| Msa0040640 | Msa1299500 | 0.808659 | 2.778212e-50 | -8.615850e-47 |
| Msa0701250 | Msa1299500 | 0.803221 | 3.866361e-49 | -8.615850e-47 |
| Msa0125590 | Msa1299500 | 0.822197 | 2.694890e-53 | -8.615850e-47 |
| Msa0127270 | Msa1299500 | 0.802046 | 6.755675e-49 | -8.615850e-47 |
| Msa0186180 | Msa1299500 | 0.806695 | 7.261724e-50 | -8.615850e-47 |
| Msa1242960 | Msa1299500 | 0.805076 | 1.589601e-49 | -8.615850e-47 |
| Msa1267930 | Msa1299500 | 0.803211 | 3.885008e-49 | -8.615850e-47 |
| Msa1293610 | Msa1299500 | 0.813296 | 2.750188e-51 | -8.615850e-47 |
| Msa1299500 | Msa1381470 | 0.804034 | 2.621297e-49 | -8.615850e-47 |
| Msa0433760 | Msa1299500 | 0.807509 | 4.882183e-50 | -8.615850e-47 |
| Msa0477630 | Msa1299500 | 0.800679 | 1.287006e-48 | -8.615850e-47 |
| Msa0478140 | Msa1299500 | 0.814049 | 1.877668e-51 | -8.615850e-47 |
| Msa0478200 | Msa1299500 | 0.810531 | 1.100398e-50 | -8.615850e-47 |
| Msa1000780 | Msa1299500 | 0.802390 | 5.740150e-49 | -8.615850e-47 |
| Msa1078990 | Msa1299500 | 0.818499 | 1.898641e-52 | -8.615850e-47 |
| Msa1211640 | Msa1299500 | 0.861290 | 1.137940e-63 | -8.615850e-47 |
| Msa0541740 | Msa1299500 | 0.802592 | 5.215292e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299500 | MtrunA17_Chr4g0060361 | 93.878 | 392 | 24 | 0 | 1 | 392 | 1 | 392 | 0.0 | 714 |
| Msa1299500 | MtrunA17_Chr4g0029591 | 49.180 | 61 | 31 | 0 | 130 | 190 | 159 | 219 | 6.00e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299500 | AT5G62550.1 | 45.490 | 255 | 112 | 10 | 1 | 243 | 5 | 244 | 9.70e-44 | 159 |
Find 84 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCCTCTGTTGATGTTTC+TGG | 0.123160 | 8_3:-60765159 | Msa1299500:intron |
| TGCATCTGGCTTCTGTTCTT+TGG | 0.167408 | 8_3:+60764983 | None:intergenic |
| TACTTTATACTCTATATATT+TGG | 0.173245 | 8_3:-60762515 | Msa1299500:three_prime_UTR |
| TCAGCTCGTCTTGTAATTTC+TGG | 0.205275 | 8_3:+60763533 | None:intergenic |
| CTTGATCTTGTCTCAGAGAT+TGG | 0.260994 | 8_3:+60764066 | None:intergenic |
| AGTGGATATCTTTGAAGTTT+TGG | 0.266285 | 8_3:+60765023 | None:intergenic |
| TTTCTTGACCCCACTCTTAC+TGG | 0.268634 | 8_3:+60763018 | None:intergenic |
| GACGAACGAGTTTCCTCTTC+TGG | 0.269058 | 8_3:+60763382 | None:intergenic |
| GTTATGTTGCCAGCCGCCTT+TGG | 0.300486 | 8_3:+60764090 | None:intergenic |
| TTGATCTTGTCTCAGAGATT+GGG | 0.302498 | 8_3:+60764067 | None:intergenic |
| AACCATAGAGTCACCCAAAA+AGG | 0.323764 | 8_3:-60763179 | Msa1299500:CDS |
| ACAGGATTAGAGAGCCTTCT+TGG | 0.325025 | 8_3:+60764135 | None:intergenic |
| AAGAGTGGGGTCAAGAAATA+TGG | 0.334967 | 8_3:-60763013 | Msa1299500:CDS |
| GCAATTTCAAAATCTGCTTC+TGG | 0.340732 | 8_3:-60763097 | Msa1299500:CDS |
| AGAGACCGGCGTTCGGGTTC+TGG | 0.355366 | 8_3:+60764014 | None:intergenic |
| GGCGACTCTATGGCTTTAAC+AGG | 0.355728 | 8_3:+60763265 | None:intergenic |
| AATCTCAGAGACCGGCGTTC+GGG | 0.362228 | 8_3:+60764008 | None:intergenic |
| AAATTAGATTTCTTCTTGTA+TGG | 0.369789 | 8_3:-60762601 | Msa1299500:intron |
| AGCCATAGAGTCGCCCAAAA+AGG | 0.383256 | 8_3:-60763257 | Msa1299500:CDS |
| AAATCTCAGAGACCGGCGTT+CGG | 0.394436 | 8_3:+60764007 | None:intergenic |
| TGTCATTCTGAAACTTTGTT+TGG | 0.399717 | 8_3:-60762680 | Msa1299500:three_prime_UTR |
| AGAGAAACTAATTCCAAAGT+TGG | 0.410613 | 8_3:+60765227 | None:intergenic |
| TTACTGGTTTCAAGCTTGCT+TGG | 0.411854 | 8_3:+60763034 | None:intergenic |
| TCTTGTCTTCAGCTTCATAT+TGG | 0.418460 | 8_3:-60763954 | Msa1299500:CDS |
| CCAAGCTGTACTGAATGTTA+TGG | 0.419138 | 8_3:-60762553 | Msa1299500:intron |
| GGGTTCTGGTTTGAGGCTCT+TGG | 0.425515 | 8_3:+60764028 | None:intergenic |
| TTGCCAGCCGCCTTTGGACT+CGG | 0.432641 | 8_3:+60764096 | None:intergenic |
| GAGACAAGATCAAGGAGGTC+TGG | 0.434478 | 8_3:-60764057 | Msa1299500:CDS |
| TGGATTCTTCAAACTAGCCT+TGG | 0.435742 | 8_3:-60763881 | Msa1299500:CDS |
| GTAGGTGCCCTTGATTTCTC+TGG | 0.448973 | 8_3:-60764186 | Msa1299500:CDS |
| GGCGTTCGGGTTCTGGTTTG+AGG | 0.450929 | 8_3:+60764021 | None:intergenic |
| TCAAAGATATCCACTGCGTT+CGG | 0.452607 | 8_3:-60765015 | Msa1299500:CDS |
| AGAGGCAGTGTTTAAGCACT+TGG | 0.461037 | 8_3:+60763303 | None:intergenic |
| TTCAAACTAGCCTTGGAGGC+AGG | 0.481991 | 8_3:-60763874 | Msa1299500:CDS |
| TGTCCTTGCCAGAGAAATCA+AGG | 0.493273 | 8_3:+60764178 | None:intergenic |
| GAGGCAGTGTTTAAGCACTT+GGG | 0.497338 | 8_3:+60763304 | None:intergenic |
| CCGTTCCTTCTCAATCTAAG+AGG | 0.503019 | 8_3:-60764950 | Msa1299500:intron |
| ATTCTTCAAACTAGCCTTGG+AGG | 0.505138 | 8_3:-60763878 | Msa1299500:CDS |
| CTGGTAGTTTGAACCGTGGT+AGG | 0.506721 | 8_3:-60763078 | Msa1299500:CDS |
| CTCGTCTTGTAATTTCTGGA+AGG | 0.512731 | 8_3:+60763537 | None:intergenic |
| TGATCTTGTCTCAGAGATTG+GGG | 0.514449 | 8_3:+60764068 | None:intergenic |
| AATCAAGGGCACCTACACTT+TGG | 0.520785 | 8_3:+60764193 | None:intergenic |
| TGCCCTTGATTTCTCTGGCA+AGG | 0.521077 | 8_3:-60764181 | Msa1299500:CDS |
| TACCTCACATCCTGCCTCCA+AGG | 0.524168 | 8_3:+60763864 | None:intergenic |
| AGCTTGAAACCAGTAAGAGT+GGG | 0.529300 | 8_3:-60763027 | Msa1299500:CDS |
| TCGTCTTGTAATTTCTGGAA+GGG | 0.535594 | 8_3:+60763538 | None:intergenic |
| AGGAGAAATGACTTGAATAG+AGG | 0.536982 | 8_3:+60763285 | None:intergenic |
| GGAGTTGTAGATGATTTGAC+AGG | 0.537947 | 8_3:+60764117 | None:intergenic |
| ACTTCTTCTACCATGGCTAC+TGG | 0.540510 | 8_3:-60763337 | Msa1299500:CDS |
| CTTCAGCACTTCTTCTACCA+TGG | 0.540835 | 8_3:-60763344 | Msa1299500:CDS |
| ACCTACACTTTGGCTTACAT+TGG | 0.542241 | 8_3:+60764203 | None:intergenic |
| TGGAGAAGTGACTTGAATAG+AGG | 0.545265 | 8_3:+60763207 | None:intergenic |
| GAAAAGCACAACATTTCACT+TGG | 0.547280 | 8_3:-60763901 | Msa1299500:CDS |
| AGGCAGTGTTTAAGCACTTG+GGG | 0.559218 | 8_3:+60763305 | None:intergenic |
| TGGAGAACAAGTGAAAGTAC+TGG | 0.572339 | 8_3:-60763470 | Msa1299500:CDS |
| ACTCCGAGTCCAAAGGCGGC+TGG | 0.574535 | 8_3:-60764099 | Msa1299500:CDS |
| AAGCTTGAAACCAGTAAGAG+TGG | 0.576498 | 8_3:-60763028 | Msa1299500:CDS |
| GGATTAGAGAGCCTTCTTGG+TGG | 0.579620 | 8_3:+60764138 | None:intergenic |
| ACTCGTTCGTCTGATGATGA+AGG | 0.582042 | 8_3:-60763370 | Msa1299500:CDS |
| TTCAATCAAATCATCATCAG+TGG | 0.585107 | 8_3:+60762732 | None:intergenic |
| AGGAAAGCTGATGCTAAAGA+AGG | 0.586233 | 8_3:-60762989 | Msa1299500:intron |
| ACGGTGGTAACAGATGCATC+TGG | 0.592766 | 8_3:+60764969 | None:intergenic |
| CAATCTCTGAGACAAGATCA+AGG | 0.592779 | 8_3:-60764065 | Msa1299500:CDS |
| GATCTGAAAATCTCAGAGAC+CGG | 0.593480 | 8_3:+60764000 | None:intergenic |
| AAGTACCTCTTAGATTGAGA+AGG | 0.594320 | 8_3:+60764945 | None:intergenic |
| TATTTCACAGATGCCAGAAG+AGG | 0.595376 | 8_3:-60763395 | Msa1299500:CDS |
| GGTCAGTTTACCAGTAGCCA+TGG | 0.603404 | 8_3:+60763327 | None:intergenic |
| CCTCTTAGATTGAGAAGGAA+CGG | 0.607757 | 8_3:+60764950 | None:intergenic |
| AGCCTTGGAGGCAGGATGTG+AGG | 0.616507 | 8_3:-60763866 | Msa1299500:intron |
| ATCTACAACTCCGAGTCCAA+AGG | 0.621399 | 8_3:-60764106 | Msa1299500:CDS |
| TGTGTATAATATTCTGTGTG+TGG | 0.624819 | 8_3:-60762656 | Msa1299500:three_prime_UTR |
| CAAGTGCTAAACCACCAAGA+AGG | 0.625854 | 8_3:-60764149 | Msa1299500:CDS |
| GTGGGGTCAAGAAATATGGA+AGG | 0.640207 | 8_3:-60763009 | Msa1299500:CDS |
| TCAAACCAGAACCCGAACGC+CGG | 0.647853 | 8_3:-60764019 | Msa1299500:CDS |
| GATCTAGAAGCCGAACGCAG+TGG | 0.649966 | 8_3:+60765005 | None:intergenic |
| TACAACTCCGAGTCCAAAGG+CGG | 0.652275 | 8_3:-60764103 | Msa1299500:CDS |
| GGCAGTGTTTAAGCACTTGG+GGG | 0.661328 | 8_3:+60763306 | None:intergenic |
| GTCCTTGCCAGAGAAATCAA+GGG | 0.679822 | 8_3:+60764179 | None:intergenic |
| GCCAATGTAAGCCAAAGTGT+AGG | 0.695393 | 8_3:-60764204 | Msa1299500:CDS |
| GCTTGAAACCAGTAAGAGTG+GGG | 0.703352 | 8_3:-60763026 | Msa1299500:CDS |
| ATTACCAGAAACATCAACAG+AGG | 0.707528 | 8_3:+60765155 | None:intergenic |
| GCTTCTGGTAGTTTGAACCG+TGG | 0.708584 | 8_3:-60763082 | Msa1299500:CDS |
| CTTAGATTGAGAAGGAACGG+TGG | 0.745957 | 8_3:+60764953 | None:intergenic |
| TCTCTGAGACAAGATCAAGG+AGG | 0.818846 | 8_3:-60764062 | Msa1299500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAGTTTTGTTTGTAAAA+CGG | - | chr8_3:60762878-60762897 | Msa1299500:intron | 15.0% |
| !! | TACTTTATACTCTATATATT+TGG | - | chr8_3:60765237-60765256 | Msa1299500:five_prime_UTR | 15.0% |
| !!! | TATATTTGGTTTTATTATAG+TGG | - | chr8_3:60765251-60765270 | Msa1299500:five_prime_UTR | 15.0% |
| !!! | CGTTTGTTTGATTTTATAAA+GGG | + | chr8_3:60762463-60762482 | None:intergenic | 20.0% |
| !! | CAGAATCAATTAATTGAAAA+AGG | + | chr8_3:60762642-60762661 | None:intergenic | 20.0% |
| !! | GAAAGGAAAAAAAAAACAAT+TGG | + | chr8_3:60762687-60762706 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTTTTTTCCTTTC+AGG | - | chr8_3:60762687-60762706 | Msa1299500:three_prime_UTR | 20.0% |
| !!! | TTGTTTTTTTTTTCCTTTCA+GGG | - | chr8_3:60762688-60762707 | Msa1299500:three_prime_UTR | 20.0% |
| !! | TGAAGTTAATTTCAAAACAT+TGG | - | chr8_3:60762948-60762967 | Msa1299500:intron | 20.0% |
| !! | GAGTATAATGTAATTAATGT+TGG | + | chr8_3:60762998-60763017 | None:intergenic | 20.0% |
| !! | CTTTACATGTATACATATAT+TGG | - | chr8_3:60763232-60763251 | Msa1299500:CDS | 20.0% |
| !! | TTCATATATAACTAAGGTTA+TGG | + | chr8_3:60763421-60763440 | None:intergenic | 20.0% |
| !!! | TCAGTTTTCATATATAACTA+AGG | + | chr8_3:60763427-60763446 | None:intergenic | 20.0% |
| !!! | AATCTAATTTACATTTTCAG+AGG | - | chr8_3:60763515-60763534 | Msa1299500:CDS | 20.0% |
| !! | ATGACAAAATTGAAATAAAC+AGG | + | chr8_3:60763937-60763956 | None:intergenic | 20.0% |
| !!! | AATTTTAAAACTTGCTAAGT+AGG | + | chr8_3:60763980-60763999 | None:intergenic | 20.0% |
| !!! | TATTGTGATTTTTGATATTG+TGG | - | chr8_3:60764007-60764026 | Msa1299500:CDS | 20.0% |
| !! | AAATTAGATTTCTTCTTGTA+TGG | - | chr8_3:60765151-60765170 | Msa1299500:intron | 20.0% |
| !! | CTTCATTAACAACTATTAAA+TGG | + | chr8_3:60765178-60765197 | None:intergenic | 20.0% |
| !!! | GCGTTTGTTTGATTTTATAA+AGG | + | chr8_3:60762464-60762483 | None:intergenic | 25.0% |
| ! | CACAAAAAAAAAACCAACTT+TGG | - | chr8_3:60762512-60762531 | Msa1299500:three_prime_UTR | 25.0% |
| ! | TGTTTATGTTGAAAATCGAA+GGG | + | chr8_3:60763025-60763044 | None:intergenic | 25.0% |
| ! | TTGTTTATGTTGAAAATCGA+AGG | + | chr8_3:60763026-60763045 | None:intergenic | 25.0% |
| ! | ATTCCTTAACATGTATCTTT+AGG | + | chr8_3:60763199-60763218 | None:intergenic | 25.0% |
| ! | GTTCACATTAAACAAACTAA+AGG | + | chr8_3:60763264-60763283 | None:intergenic | 25.0% |
| ! | TAAGTCTTACATAATGCAAA+TGG | + | chr8_3:60763385-60763404 | None:intergenic | 25.0% |
| !!! | AAACTGAGTGAATACTTTTT+AGG | - | chr8_3:60763440-60763459 | Msa1299500:CDS | 25.0% |
| !!! | AACTGAGTGAATACTTTTTA+GGG | - | chr8_3:60763441-60763460 | Msa1299500:CDS | 25.0% |
| ! | ATAAACAGGAATGAATTGAT+TGG | + | chr8_3:60763923-60763942 | None:intergenic | 25.0% |
| ! | TGCAATCAAAGTTTATCAAT+TGG | + | chr8_3:60764049-60764068 | None:intergenic | 25.0% |
| ! | AAATCACATTTATACATGAG+TGG | - | chr8_3:60764094-60764113 | Msa1299500:CDS | 25.0% |
| !!! | TAATCAAGTCGTCTTTTTTA+TGG | - | chr8_3:60764168-60764187 | Msa1299500:CDS | 25.0% |
| !!! | TTTTGGCTAATTTCCTTTTT+GGG | + | chr8_3:60764511-60764530 | None:intergenic | 25.0% |
| ! | TGCTGAAGAAAAAGAAAATA+TGG | - | chr8_3:60764901-60764920 | Msa1299500:intron | 25.0% |
| ! | GAAAAAGAAAATATGGTAAG+TGG | - | chr8_3:60764908-60764927 | Msa1299500:intron | 25.0% |
| ! | AGAATATATGTCTGATATGT+TGG | - | chr8_3:60764974-60764993 | Msa1299500:CDS | 25.0% |
| AGAGAAACTAATTCCAAAGT+TGG | + | chr8_3:60762528-60762547 | None:intergenic | 30.0% | |
| !!! | AGTGGATATCTTTGAAGTTT+TGG | + | chr8_3:60762732-60762751 | None:intergenic | 30.0% |
| AACTGAAAATTCATGCAAGA+AGG | - | chr8_3:60763058-60763077 | Msa1299500:CDS | 30.0% | |
| TCATGCAAGAAGGATAATAT+TGG | - | chr8_3:60763068-60763087 | Msa1299500:CDS | 30.0% | |
| ACAAAGACTTATCGATCTTA+CGG | + | chr8_3:60763326-60763345 | None:intergenic | 30.0% | |
| TGTACTCTACTTCAATTCAA+GGG | + | chr8_3:60763485-60763504 | None:intergenic | 30.0% | |
| TTGTACTCTACTTCAATTCA+AGG | + | chr8_3:60763486-60763505 | None:intergenic | 30.0% | |
| ! | CAAGTTCAGTAAGTTTTTGT+TGG | + | chr8_3:60764264-60764283 | None:intergenic | 30.0% |
| CAACAAAAACTTACTGAACT+TGG | - | chr8_3:60764262-60764281 | Msa1299500:intron | 30.0% | |
| !! | CTTTTGGCTAATTTCCTTTT+TGG | + | chr8_3:60764512-60764531 | None:intergenic | 30.0% |
| !!! | TTTTGGCTAGTTTCCTTTTT+GGG | + | chr8_3:60764589-60764608 | None:intergenic | 30.0% |
| ACTAGCCAAAAGAAAAATCT+TGG | - | chr8_3:60764598-60764617 | Msa1299500:intron | 30.0% | |
| ! | TGGTTCCAAGATTTTTCTTT+TGG | + | chr8_3:60764606-60764625 | None:intergenic | 30.0% |
| ! | TTGTCTAAAATCTAATGCCT+TGG | - | chr8_3:60764829-60764848 | Msa1299500:intron | 30.0% |
| ! | TTTTCTTCAGCACTTGTAAT+AGG | + | chr8_3:60764893-60764912 | None:intergenic | 30.0% |
| !!! | ATATGTTGGTTTTGTCTTGT+AGG | - | chr8_3:60764988-60765007 | Msa1299500:CDS | 30.0% |
| TTCAATCAAATCATCATCAG+TGG | + | chr8_3:60765023-60765042 | None:intergenic | 30.0% | |
| !! | TGTCATTCTGAAACTTTGTT+TGG | - | chr8_3:60765072-60765091 | Msa1299500:intron | 30.0% |
| TGTGTATAATATTCTGTGTG+TGG | - | chr8_3:60765096-60765115 | Msa1299500:intron | 30.0% | |
| ACCAAACCAAAAACAAACGA+TGG | - | chr8_3:60762562-60762581 | Msa1299500:intron | 35.0% | |
| !!! | TCCATCGTTTGTTTTTGGTT+TGG | + | chr8_3:60762566-60762585 | None:intergenic | 35.0% |
| ATTACCAGAAACATCAACAG+AGG | + | chr8_3:60762600-60762619 | None:intergenic | 35.0% | |
| AAGTACCTCTTAGATTGAGA+AGG | + | chr8_3:60762810-60762829 | None:intergenic | 35.0% | |
| ACTCAGATTGTTTGAATTCG+TGG | - | chr8_3:60762911-60762930 | Msa1299500:intron | 35.0% | |
| CTCAGATTGTTTGAATTCGT+GGG | - | chr8_3:60762912-60762931 | Msa1299500:intron | 35.0% | |
| TCAGATTGTTTGAATTCGTG+GGG | - | chr8_3:60762913-60762932 | Msa1299500:intron | 35.0% | |
| GTGCCTAAAGATACATGTTA+AGG | - | chr8_3:60763193-60763212 | Msa1299500:CDS | 35.0% | |
| TTGATCTTGTCTCAGAGATT+GGG | + | chr8_3:60763688-60763707 | None:intergenic | 35.0% | |
| TCTTGTCTTCAGCTTCATAT+TGG | - | chr8_3:60763798-60763817 | Msa1299500:intron | 35.0% | |
| ! | CATTTTCAGAGAGCTTGATT+TGG | + | chr8_3:60763829-60763848 | None:intergenic | 35.0% |
| ! | GAAAAGCACAACATTTCACT+TGG | - | chr8_3:60763851-60763870 | Msa1299500:intron | 35.0% |
| ! | AGACGACTTGATTAGTTCAT+GGG | + | chr8_3:60764162-60764181 | None:intergenic | 35.0% |
| ! | AAGACGACTTGATTAGTTCA+TGG | + | chr8_3:60764163-60764182 | None:intergenic | 35.0% |
| ! | TCGTCTTGTAATTTCTGGAA+GGG | + | chr8_3:60764217-60764236 | None:intergenic | 35.0% |
| ! | CAGTAAGTTTTTGTTGGTGT+CGG | + | chr8_3:60764258-60764277 | None:intergenic | 35.0% |
| AGGAGAAATGACTTGAATAG+AGG | + | chr8_3:60764470-60764489 | None:intergenic | 35.0% | |
| ! | AGGCAGTGAGATTTTTCTTT+TGG | + | chr8_3:60764528-60764547 | None:intergenic | 35.0% |
| !!! | CTTTTGGCTAGTTTCCTTTT+TGG | + | chr8_3:60764590-60764609 | None:intergenic | 35.0% |
| !! | TCTGAGATTTTCTCTCAACT+TGG | + | chr8_3:60764626-60764645 | None:intergenic | 35.0% |
| GCAATTTCAAAATCTGCTTC+TGG | - | chr8_3:60764655-60764674 | Msa1299500:intron | 35.0% | |
| !! | ACTTTTTAACTGACCTACCA+CGG | + | chr8_3:60764690-60764709 | None:intergenic | 35.0% |
| AGCAAAAAGTAACAACACCA+AGG | + | chr8_3:60764849-60764868 | None:intergenic | 35.0% | |
| ! | GTTTTGTCTTGTAGGATGTT+CGG | - | chr8_3:60764996-60765015 | Msa1299500:CDS | 35.0% |
| !! | GGAGTTTGCTTGATCTTTTT+AGG | - | chr8_3:60765117-60765136 | Msa1299500:intron | 35.0% |
| !!! | GGTTTTATTATAGTGGTCTG+TGG | - | chr8_3:60765258-60765277 | Msa1299500:five_prime_UTR | 35.0% |
| !! | GCTCTTCCATCGTTTGTTTT+TGG | + | chr8_3:60762571-60762590 | None:intergenic | 40.0% |
| CAATCCTCTGTTGATGTTTC+TGG | - | chr8_3:60762593-60762612 | Msa1299500:intron | 40.0% | |
| TCAAAGATATCCACTGCGTT+CGG | - | chr8_3:60762737-60762756 | Msa1299500:CDS | 40.0% | |
| CCTCTTAGATTGAGAAGGAA+CGG | + | chr8_3:60762805-60762824 | None:intergenic | 40.0% | |
| ! | ACCTACACTTTGGCTTACAT+TGG | + | chr8_3:60763552-60763571 | None:intergenic | 40.0% |
| GGAGTTGTAGATGATTTGAC+AGG | + | chr8_3:60763638-60763657 | None:intergenic | 40.0% | |
| TGATCTTGTCTCAGAGATTG+GGG | + | chr8_3:60763687-60763706 | None:intergenic | 40.0% | |
| CTTGATCTTGTCTCAGAGAT+TGG | + | chr8_3:60763689-60763708 | None:intergenic | 40.0% | |
| !! | CAATCTCTGAGACAAGATCA+AGG | - | chr8_3:60763687-60763706 | Msa1299500:intron | 40.0% |
| GATCTGAAAATCTCAGAGAC+CGG | + | chr8_3:60763755-60763774 | None:intergenic | 40.0% | |
| ! | TGGATTCTTCAAACTAGCCT+TGG | - | chr8_3:60763871-60763890 | Msa1299500:CDS | 40.0% |
| !! | ATTCTTCAAACTAGCCTTGG+AGG | - | chr8_3:60763874-60763893 | Msa1299500:CDS | 40.0% |
| TGCAATCGCATCATGATCTT+TGG | - | chr8_3:60764065-60764084 | Msa1299500:CDS | 40.0% | |
| ! | CTCGTCTTGTAATTTCTGGA+AGG | + | chr8_3:60764218-60764237 | None:intergenic | 40.0% |
| TCAGCTCGTCTTGTAATTTC+TGG | + | chr8_3:60764222-60764241 | None:intergenic | 40.0% | |
| ! | TGGAGAACAAGTGAAAGTAC+TGG | - | chr8_3:60764282-60764301 | Msa1299500:intron | 40.0% |
| TATTTCACAGATGCCAGAAG+AGG | - | chr8_3:60764357-60764376 | Msa1299500:intron | 40.0% | |
| TGGAGAAGTGACTTGAATAG+AGG | + | chr8_3:60764548-60764567 | None:intergenic | 40.0% | |
| !!! | GGTGACTCTATGGTTTTAAC+TGG | + | chr8_3:60764568-60764587 | None:intergenic | 40.0% |
| AACCATAGAGTCACCCAAAA+AGG | - | chr8_3:60764573-60764592 | Msa1299500:intron | 40.0% | |
| !!! | TTCCTTTTTGGGTGACTCTA+TGG | + | chr8_3:60764578-60764597 | None:intergenic | 40.0% |
| !! | TTACTGGTTTCAAGCTTGCT+TGG | + | chr8_3:60764721-60764740 | None:intergenic | 40.0% |
| AAGCTTGAAACCAGTAAGAG+TGG | - | chr8_3:60764724-60764743 | Msa1299500:intron | 40.0% | |
| AGCTTGAAACCAGTAAGAGT+GGG | - | chr8_3:60764725-60764744 | Msa1299500:intron | 40.0% | |
| AAGAGTGGGGTCAAGAAATA+TGG | - | chr8_3:60764739-60764758 | Msa1299500:intron | 40.0% | |
| AGGAAAGCTGATGCTAAAGA+AGG | - | chr8_3:60764763-60764782 | Msa1299500:intron | 40.0% | |
| CCATAACATTCAGTACAGCT+TGG | + | chr8_3:60765202-60765221 | None:intergenic | 40.0% | |
| CCAAGCTGTACTGAATGTTA+TGG | - | chr8_3:60765199-60765218 | Msa1299500:five_prime_UTR | 40.0% | |
| ! | TGCATCTGGCTTCTGTTCTT+TGG | + | chr8_3:60762772-60762791 | None:intergenic | 45.0% |
| CTTAGATTGAGAAGGAACGG+TGG | + | chr8_3:60762802-60762821 | None:intergenic | 45.0% | |
| CCGTTCCTTCTCAATCTAAG+AGG | - | chr8_3:60762802-60762821 | Msa1299500:intron | 45.0% | |
| GCCAATGTAAGCCAAAGTGT+AGG | - | chr8_3:60763548-60763567 | Msa1299500:intron | 45.0% | |
| !! | AATCAAGGGCACCTACACTT+TGG | + | chr8_3:60763562-60763581 | None:intergenic | 45.0% |
| GTCCTTGCCAGAGAAATCAA+GGG | + | chr8_3:60763576-60763595 | None:intergenic | 45.0% | |
| TGTCCTTGCCAGAGAAATCA+AGG | + | chr8_3:60763577-60763596 | None:intergenic | 45.0% | |
| CAAGTGCTAAACCACCAAGA+AGG | - | chr8_3:60763603-60763622 | Msa1299500:intron | 45.0% | |
| ACAGGATTAGAGAGCCTTCT+TGG | + | chr8_3:60763620-60763639 | None:intergenic | 45.0% | |
| ATCTACAACTCCGAGTCCAA+AGG | - | chr8_3:60763646-60763665 | Msa1299500:intron | 45.0% | |
| !! | TCTCTGAGACAAGATCAAGG+AGG | - | chr8_3:60763690-60763709 | Msa1299500:intron | 45.0% |
| ! | ACTCGTTCGTCTGATGATGA+AGG | - | chr8_3:60764382-60764401 | Msa1299500:intron | 45.0% |
| CTTCAGCACTTCTTCTACCA+TGG | - | chr8_3:60764408-60764427 | Msa1299500:intron | 45.0% | |
| ACTTCTTCTACCATGGCTAC+TGG | - | chr8_3:60764415-60764434 | Msa1299500:intron | 45.0% | |
| AGGCAGTGTTTAAGCACTTG+GGG | + | chr8_3:60764450-60764469 | None:intergenic | 45.0% | |
| GAGGCAGTGTTTAAGCACTT+GGG | + | chr8_3:60764451-60764470 | None:intergenic | 45.0% | |
| AGAGGCAGTGTTTAAGCACT+TGG | + | chr8_3:60764452-60764471 | None:intergenic | 45.0% | |
| !! | TTCCTTTTTGGGCGACTCTA+TGG | + | chr8_3:60764500-60764519 | None:intergenic | 45.0% |
| GCTTGAAACCAGTAAGAGTG+GGG | - | chr8_3:60764726-60764745 | Msa1299500:intron | 45.0% | |
| TTTCTTGACCCCACTCTTAC+TGG | + | chr8_3:60764737-60764756 | None:intergenic | 45.0% | |
| GTGGGGTCAAGAAATATGGA+AGG | - | chr8_3:60764743-60764762 | Msa1299500:intron | 45.0% | |
| CAGAAGCAGAGTTCCCTGAA+AGG | + | chr8_3:60762704-60762723 | None:intergenic | 50.0% | |
| ACGGTGGTAACAGATGCATC+TGG | + | chr8_3:60762786-60762805 | None:intergenic | 50.0% | |
| GTAGGTGCCCTTGATTTCTC+TGG | - | chr8_3:60763566-60763585 | Msa1299500:intron | 50.0% | |
| TGCCCTTGATTTCTCTGGCA+AGG | - | chr8_3:60763571-60763590 | Msa1299500:intron | 50.0% | |
| GGATTAGAGAGCCTTCTTGG+TGG | + | chr8_3:60763617-60763636 | None:intergenic | 50.0% | |
| TACAACTCCGAGTCCAAAGG+CGG | - | chr8_3:60763649-60763668 | Msa1299500:intron | 50.0% | |
| GAGACAAGATCAAGGAGGTC+TGG | - | chr8_3:60763695-60763714 | Msa1299500:intron | 50.0% | |
| AAATCTCAGAGACCGGCGTT+CGG | + | chr8_3:60763748-60763767 | None:intergenic | 50.0% | |
| !! | TTCAAACTAGCCTTGGAGGC+AGG | - | chr8_3:60763878-60763897 | Msa1299500:CDS | 50.0% |
| GACGAACGAGTTTCCTCTTC+TGG | + | chr8_3:60764373-60764392 | None:intergenic | 50.0% | |
| GGTCAGTTTACCAGTAGCCA+TGG | + | chr8_3:60764428-60764447 | None:intergenic | 50.0% | |
| GGCAGTGTTTAAGCACTTGG+GGG | + | chr8_3:60764449-60764468 | None:intergenic | 50.0% | |
| !! | GGCGACTCTATGGCTTTAAC+AGG | + | chr8_3:60764490-60764509 | None:intergenic | 50.0% |
| AGCCATAGAGTCGCCCAAAA+AGG | - | chr8_3:60764495-60764514 | Msa1299500:intron | 50.0% | |
| GCTTCTGGTAGTTTGAACCG+TGG | - | chr8_3:60764670-60764689 | Msa1299500:intron | 50.0% | |
| CTGGTAGTTTGAACCGTGGT+AGG | - | chr8_3:60764674-60764693 | Msa1299500:intron | 50.0% | |
| GATCTAGAAGCCGAACGCAG+TGG | + | chr8_3:60762750-60762769 | None:intergenic | 55.0% | |
| GTTATGTTGCCAGCCGCCTT+TGG | + | chr8_3:60763665-60763684 | None:intergenic | 55.0% | |
| !! | GGGTTCTGGTTTGAGGCTCT+TGG | + | chr8_3:60763727-60763746 | None:intergenic | 55.0% |
| TCAAACCAGAACCCGAACGC+CGG | - | chr8_3:60763733-60763752 | Msa1299500:intron | 55.0% | |
| AATCTCAGAGACCGGCGTTC+GGG | + | chr8_3:60763747-60763766 | None:intergenic | 55.0% | |
| TACCTCACATCCTGCCTCCA+AGG | + | chr8_3:60763891-60763910 | None:intergenic | 55.0% | |
| TACATGAGTGGCCTCAACCG+TGG | - | chr8_3:60764106-60764125 | Msa1299500:CDS | 55.0% | |
| TGTAGTCTAGCCCGCAACCA+CGG | + | chr8_3:60764126-60764145 | None:intergenic | 55.0% | |
| TTGCCAGCCGCCTTTGGACT+CGG | + | chr8_3:60763659-60763678 | None:intergenic | 60.0% | |
| !! | GGCGTTCGGGTTCTGGTTTG+AGG | + | chr8_3:60763734-60763753 | None:intergenic | 60.0% |
| AGCCTTGGAGGCAGGATGTG+AGG | - | chr8_3:60763886-60763905 | Msa1299500:CDS | 60.0% | |
| AGTGGCCTCAACCGTGGTTG+CGG | - | chr8_3:60764112-60764131 | Msa1299500:CDS | 60.0% | |
| ACTCCGAGTCCAAAGGCGGC+TGG | - | chr8_3:60763653-60763672 | Msa1299500:intron | 65.0% | |
| ! | AGAGACCGGCGTTCGGGTTC+TGG | + | chr8_3:60763741-60763760 | None:intergenic | 65.0% |
| GTGGCCTCAACCGTGGTTGC+GGG | - | chr8_3:60764113-60764132 | Msa1299500:CDS | 65.0% | |
| CTAGCCCGCAACCACGGTTG+AGG | + | chr8_3:60764120-60764139 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 60762452 | 60765322 | 60762452 | ID=Msa1299500;Name=Msa1299500 |
| chr8_3 | mRNA | 60762452 | 60765322 | 60762452 | ID=Msa1299500-mRNA-1;Parent=Msa1299500;Name=Msa1299500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=129|1|1|1|0.83|0.71|7|232|392 |
| chr8_3 | exon | 60762452 | 60762562 | 60762452 | ID=Msa1299500-mRNA-1:exon:17772;Parent=Msa1299500-mRNA-1 |
| chr8_3 | exon | 60762602 | 60762764 | 60762602 | ID=Msa1299500-mRNA-1:exon:17771;Parent=Msa1299500-mRNA-1 |
| chr8_3 | exon | 60762852 | 60762895 | 60762852 | ID=Msa1299500-mRNA-1:exon:17770;Parent=Msa1299500-mRNA-1 |
| chr8_3 | exon | 60762990 | 60763560 | 60762990 | ID=Msa1299500-mRNA-1:exon:17769;Parent=Msa1299500-mRNA-1 |
| chr8_3 | exon | 60763867 | 60764239 | 60763867 | ID=Msa1299500-mRNA-1:exon:17768;Parent=Msa1299500-mRNA-1 |
| chr8_3 | exon | 60764951 | 60765065 | 60764951 | ID=Msa1299500-mRNA-1:exon:17767;Parent=Msa1299500-mRNA-1 |
| chr8_3 | exon | 60765160 | 60765322 | 60765160 | ID=Msa1299500-mRNA-1:exon:17766;Parent=Msa1299500-mRNA-1 |
| chr8_3 | five_prime_UTR | 60765194 | 60765322 | 60765194 | ID=Msa1299500-mRNA-1:five_prime_utr;Parent=Msa1299500-mRNA-1 |
| chr8_3 | CDS | 60765160 | 60765193 | 60765160 | ID=Msa1299500-mRNA-1:cds;Parent=Msa1299500-mRNA-1 |
| chr8_3 | CDS | 60764951 | 60765065 | 60764951 | ID=Msa1299500-mRNA-1:cds;Parent=Msa1299500-mRNA-1 |
| chr8_3 | CDS | 60763867 | 60764239 | 60763867 | ID=Msa1299500-mRNA-1:cds;Parent=Msa1299500-mRNA-1 |
| chr8_3 | CDS | 60762990 | 60763560 | 60762990 | ID=Msa1299500-mRNA-1:cds;Parent=Msa1299500-mRNA-1 |
| chr8_3 | CDS | 60762852 | 60762895 | 60762852 | ID=Msa1299500-mRNA-1:cds;Parent=Msa1299500-mRNA-1 |
| chr8_3 | CDS | 60762723 | 60762764 | 60762723 | ID=Msa1299500-mRNA-1:cds;Parent=Msa1299500-mRNA-1 |
| chr8_3 | three_prime_UTR | 60762602 | 60762722 | 60762602 | ID=Msa1299500-mRNA-1:three_prime_utr;Parent=Msa1299500-mRNA-1 |
| chr8_3 | three_prime_UTR | 60762452 | 60762562 | 60762452 | ID=Msa1299500-mRNA-1:three_prime_utr;Parent=Msa1299500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
