AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078990 MtrunA17_Chr7g0263671 96.286 754 24 2 1 754 1 750 0.0 1449
Msa1078990 MtrunA17_Chr1g0181631 46.861 446 208 9 220 649 46 478 1.38e-55 198
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078990 AT3G53320.1 34.653 303 154 12 19 297 16 298 7.25e-24 107
Msa1078990 AT2G37070.2 40.602 133 64 5 19 144 18 142 7.77e-16 81.6
Msa1078990 AT2G37070.1 40.602 133 64 5 19 144 18 142 1.10e-15 81.3

Find 164 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAGCTGCATTAGCAATTT+TGG 0.133518 7_2:+78015596 None:intergenic
TTTCTTCTTGCGGAATTAAA+TGG 0.190171 7_2:+78014183 None:intergenic
GAATTTGCACTAGGCTTTAT+TGG 0.199904 7_2:+78014552 None:intergenic
GTCGTCTAGCTCTGGGATTC+AGG 0.216008 7_2:-78015568 Msa1078990:CDS
TCCAATTACCACCAAAATTC+AGG 0.233828 7_2:-78016174 Msa1078990:intron
TCAAAATATCCGATGCTAAA+AGG 0.236588 7_2:+78012570 None:intergenic
TGACTGGCCAGGAGTTAATT+TGG 0.237626 7_2:+78014278 None:intergenic
GTGTTAATGTTTAGGGGTTT+TGG 0.243930 7_2:-78015817 Msa1078990:intron
AACACTAAGCGATGCTCTTT+TGG 0.247393 7_2:+78014518 None:intergenic
ACAAACCTTTGCTTAATTCT+TGG 0.254223 7_2:+78012948 None:intergenic
TCAAGAAACAAAACTGAATC+TGG 0.266121 7_2:-78014093 Msa1078990:CDS
CCAAAGATTGGTTTCTTTGA+TGG 0.281624 7_2:-78013724 Msa1078990:CDS
GTGTCAAGAGCATCTGTTAT+TGG 0.287645 7_2:-78014339 Msa1078990:CDS
CTTGCAGCTTTGCTTTGATT+TGG 0.294963 7_2:+78013401 None:intergenic
CCAGCTGTTGCGAGAGTAAT+CGG 0.318243 7_2:-78014826 Msa1078990:CDS
TAAGTTGCTACCGGAAGATT+TGG 0.323444 7_2:+78014227 None:intergenic
AATGATTCATCAATATGATT+TGG 0.323598 7_2:+78013319 None:intergenic
CCAGCTCCTGCAAAACCTTC+AGG 0.325778 7_2:-78013763 Msa1078990:CDS
TGAAACTGAAAGTGTTGATT+TGG 0.331552 7_2:-78015673 Msa1078990:CDS
CCATACCATTGGATTTATCT+TGG 0.343022 7_2:+78013011 None:intergenic
TGTGAATCCATTTCGACCTT+AGG 0.344717 7_2:-78015714 Msa1078990:CDS
GACAAGGCAAAACACATAAA+TGG 0.355451 7_2:-78014474 Msa1078990:CDS
AGCGAAGCCCGATGGTGTTC+TGG 0.355565 7_2:+78014116 None:intergenic
GGCTTTATTGGCACCTTTGA+CGG 0.356299 7_2:+78014564 None:intergenic
CCCAGAGCTAGACGACATTC+TGG 0.369940 7_2:+78015575 None:intergenic
CAAAGATTGGTTTCTTTGAT+GGG 0.372758 7_2:-78013723 Msa1078990:CDS
CACCCCTACCAGCATTGATA+TGG 0.384562 7_2:-78012906 Msa1078990:CDS
AGCAACTTATCTGATAATAT+TGG 0.387973 7_2:-78014213 Msa1078990:CDS
TCCGATGCTAAAAGGATTCA+TGG 0.388467 7_2:+78012578 None:intergenic
ACCAGAATGTCGTCTAGCTC+TGG 0.390989 7_2:-78015576 Msa1078990:CDS
CGACTGCCTTCGCCAAAGAT+TGG 0.391284 7_2:-78013736 Msa1078990:CDS
CCATCAAAGAAACCAATCTT+TGG 0.394047 7_2:+78013724 None:intergenic
GGGCAGGAGGCTCAGCAAAA+TGG 0.394670 7_2:-78013835 Msa1078990:CDS
TATACATCCTCTTCAATCCT+TGG 0.397018 7_2:+78015744 None:intergenic
GCAAGAAGAAACGTTATTGC+TGG 0.399942 7_2:-78014171 Msa1078990:CDS
ATCAACCAACTTACCTGTGC+TGG 0.411015 7_2:-78012792 Msa1078990:CDS
TTGGATAATATTGTGGACTT+AGG 0.412150 7_2:+78014297 None:intergenic
TCTTTCGCAGATTGAACTTA+GGG 0.413908 7_2:+78015967 None:intergenic
TGGTGGTAATTGGAAGAAAC+GGG 0.413945 7_2:+78016183 None:intergenic
TGTTTCAGAAATTTGAACTT+AGG 0.415299 7_2:+78016343 None:intergenic
TACATCACTGTCGCATGAAA+TGG 0.416230 7_2:-78013209 Msa1078990:CDS
TCTTTGACATCGTTGTTTAT+CGG 0.416620 7_2:+78016258 None:intergenic
TTGGTGGTAATTGGAAGAAA+CGG 0.418940 7_2:+78016182 None:intergenic
CTCTTTCGCAGATTGAACTT+AGG 0.423818 7_2:+78015966 None:intergenic
TCAGCAACTTCCAAATCTTC+CGG 0.426512 7_2:-78014237 Msa1078990:CDS
ATCGCTCCCTAAGGTCGAAA+TGG 0.427949 7_2:+78015707 None:intergenic
GTATAAATTCTCAGATTTCT+CGG 0.431931 7_2:-78013876 Msa1078990:CDS
TTTGGAGGGTGATTTGTTTG+AGG 0.435278 7_2:-78015655 Msa1078990:CDS
CTTGTTGCTGGATTTCTGAA+TGG 0.440232 7_2:+78015620 None:intergenic
CCCTCCCGCCAGAACACCAT+CGG 0.440512 7_2:-78014124 Msa1078990:CDS
GTGAATCCATTTCGACCTTA+GGG 0.441776 7_2:-78015713 Msa1078990:CDS
CATCAATATGATTTGGATGT+GGG 0.447348 7_2:+78013326 None:intergenic
TCGTCTAGCTCTGGGATTCA+GGG 0.447723 7_2:-78015567 Msa1078990:CDS
GAACTATCACACATGTGTTT+AGG 0.449363 7_2:+78013961 None:intergenic
GAAGATTTAAATCCATGTAA+TGG 0.458165 7_2:-78012491 Msa1078990:three_prime_UTR
AGCAATAACGTTTCTTCTTG+CGG 0.458182 7_2:+78014173 None:intergenic
AACACATGTGTGATAGTTCA+AGG 0.461632 7_2:-78013957 Msa1078990:CDS
CATCTGTTATTGGAGGTTCA+AGG 0.462665 7_2:-78014329 Msa1078990:CDS
TTTGTAATGCTTTCCAGCAC+AGG 0.466793 7_2:+78012779 None:intergenic
ATCAACACTTTCAGTTTCAA+AGG 0.467451 7_2:+78015677 None:intergenic
TGAAGGCATCACCTGCTTCA+AGG 0.467661 7_2:-78014855 Msa1078990:CDS
TGTGGTATTTGTGTAAAAGT+AGG 0.484204 7_2:+78014781 None:intergenic
CTGGCGGGAGGGCGAGATGA+GGG 0.488219 7_2:+78014135 None:intergenic
TTGTCTTGGTTGATATTGAC+TGG 0.491915 7_2:+78014262 None:intergenic
GAACAAGAAGAAAATGAACT+TGG 0.498335 7_2:-78012549 Msa1078990:three_prime_UTR
ATTCGATAACTCCATACCAT+TGG 0.498382 7_2:+78013000 None:intergenic
GCTTTCCAGCACAGGTAAGT+TGG 0.501226 7_2:+78012787 None:intergenic
GAATTATCAGTCAAAGTGTA+AGG 0.507200 7_2:-78013813 Msa1078990:CDS
ATCTGCGAAAGAGTTTAGCT+TGG 0.507998 7_2:-78015956 Msa1078990:CDS
ATCTGTTATTGGAGGTTCAA+GGG 0.509068 7_2:-78014328 Msa1078990:CDS
TCTGCGAAAGAGTTTAGCTT+GGG 0.510391 7_2:-78015955 Msa1078990:CDS
TTCTTTGTTTCAGATGTCTG+AGG 0.511993 7_2:+78015996 None:intergenic
CCGCTAGTTCTGTTAGTGAC+TGG 0.512313 7_2:-78014014 Msa1078990:CDS
AATGTGACTTGGCGAATAGA+TGG 0.518814 7_2:+78016440 None:intergenic
CAAGAAACAAAACTGAATCT+GGG 0.519601 7_2:-78014092 Msa1078990:CDS
TCATCAATATGATTTGGATG+TGG 0.521364 7_2:+78013325 None:intergenic
CCGATTACTCTCGCAACAGC+TGG 0.522284 7_2:+78014826 None:intergenic
TTGGTTGATATTGACTGGCC+AGG 0.525155 7_2:+78014267 None:intergenic
AGTTAATTTGGATAATATTG+TGG 0.526161 7_2:+78014290 None:intergenic
CCAAGATAAATCCAATGGTA+TGG 0.527305 7_2:-78013011 Msa1078990:CDS
ATCTATTTCAAAGCCGTCAA+AGG 0.527476 7_2:-78014577 Msa1078990:CDS
TAGGGGTGACACATTGATAC+GGG 0.528043 7_2:+78012921 None:intergenic
GCTGGTAGATTCCTTGAAGC+AGG 0.530424 7_2:+78014844 None:intergenic
CTTCTTCACATCACTTTCGC+CGG 0.532432 7_2:-78016307 Msa1078990:five_prime_UTR
TCCACATATCATAAGCGAAA+AGG 0.535480 7_2:-78014496 Msa1078990:CDS
GAACATAAATTCCAAGACTC+AGG 0.536096 7_2:-78013083 Msa1078990:CDS
TATTGGAGGTTCAAGGGGTA+CGG 0.538224 7_2:-78014322 Msa1078990:CDS
GCTAGAGTTACTATCAATGC+TGG 0.539482 7_2:+78013933 None:intergenic
GGCAAATAAATACCATTACA+TGG 0.542601 7_2:+78012479 None:intergenic
CCAGAATGTCGTCTAGCTCT+GGG 0.542743 7_2:-78015575 Msa1078990:CDS
AAGCCCGATGGTGTTCTGGC+GGG 0.543148 7_2:+78014120 None:intergenic
TATCGGAGAAGCGTCGGAGT+CGG 0.545556 7_2:+78016275 None:intergenic
TGACTCCCTCCTTGTAGCGA+CGG 0.546341 7_2:+78014599 None:intergenic
TCTTTGGCGAAGGCAGTCGC+AGG 0.546881 7_2:+78013740 None:intergenic
AACTGAAAGTGTTGATTTGG+AGG 0.547878 7_2:-78015670 Msa1078990:CDS
TCTGGCGGGAGGGCGAGATG+AGG 0.548702 7_2:+78014134 None:intergenic
TATAATTGAAGGTGTTGAGA+AGG 0.549903 7_2:-78015775 Msa1078990:CDS
GTAGGGGTGACACATTGATA+CGG 0.550011 7_2:+78012920 None:intergenic
TGTTAGTGACTGGTCTTCAG+AGG 0.550980 7_2:-78014004 Msa1078990:CDS
GACTCCCTCCTTGTAGCGAC+GGG 0.552128 7_2:+78014600 None:intergenic
TGCCATATCAATGCTGGTAG+GGG 0.552572 7_2:+78012904 None:intergenic
ATATTATCCAAATTAACTCC+TGG 0.553361 7_2:-78014285 Msa1078990:CDS
TCAGACACTAATGCAGATCA+AGG 0.554880 7_2:-78013898 Msa1078990:CDS
ACTGACCCGTGTCGATCACC+AGG 0.556843 7_2:-78013161 Msa1078990:CDS
TGATAGTAACTCTAGCAGAA+AGG 0.557439 7_2:-78013926 Msa1078990:CDS
AACTTAGGAGTAGCGGCTAG+TGG 0.558153 7_2:+78016358 None:intergenic
GAGTTAACTAGTATAATTGA+AGG 0.559085 7_2:-78015786 Msa1078990:CDS
TTGCCATATCAATGCTGGTA+GGG 0.559511 7_2:+78012903 None:intergenic
GGTTAAACTATCGCTCCCTA+AGG 0.567132 7_2:+78015698 None:intergenic
CAGCTGTTGCGAGAGTAATC+GGG 0.570911 7_2:-78014825 Msa1078990:CDS
ATTATCAGATAAGTTGCTAC+CGG 0.571364 7_2:+78014218 None:intergenic
CACTGTCCTGGTGATCGACA+CGG 0.577273 7_2:+78013155 None:intergenic
TTTCTTGAAGCGAAGCCCGA+TGG 0.578631 7_2:+78014108 None:intergenic
CAGTCACTAACAGAACTAGC+GGG 0.579052 7_2:+78014015 None:intergenic
ACTGTCCTGGTGATCGACAC+GGG 0.579748 7_2:+78013156 None:intergenic
GAAATTGTGGAATTTGCACT+AGG 0.580738 7_2:+78014543 None:intergenic
AGAACAAGTACTTAAAGACT+TGG 0.583177 7_2:+78012649 None:intergenic
GGATTTCAAAGACAAACAAA+AGG 0.584203 7_2:+78016380 None:intergenic
CCGATGGTGTTCTGGCGGGA+GGG 0.584412 7_2:+78014124 None:intergenic
GGCTTGCTAAAACATGGAGC+AGG 0.585668 7_2:-78013439 Msa1078990:CDS
AAAGATTGGTTTCTTTGATG+GGG 0.587295 7_2:-78013722 Msa1078990:intron
TGGTGATCGACACGGGTCAG+TGG 0.589738 7_2:+78013163 None:intergenic
AAGTGTAAGGACTGCTTCTG+TGG 0.593654 7_2:-78013800 Msa1078990:CDS
GCGGGAGGGCGAGATGAGGG+AGG 0.596464 7_2:+78014138 None:intergenic
CCACACTCTTCTGTGTCTCA+CGG 0.596515 7_2:-78013460 Msa1078990:CDS
ACTTAGGAGTAGCGGCTAGT+GGG 0.597098 7_2:+78016359 None:intergenic
AAGAAACCAATCTTTGGCGA+AGG 0.598647 7_2:+78013730 None:intergenic
AAATTTGAACTTAGGAGTAG+CGG 0.599706 7_2:+78016351 None:intergenic
GAAGGCAGTCGCAGGCCTGA+AGG 0.602125 7_2:+78013748 None:intergenic
TCTGTTATTGGAGGTTCAAG+GGG 0.602408 7_2:-78014327 Msa1078990:CDS
GATTGTTTGATCGAACAAGT+TGG 0.602661 7_2:-78013112 Msa1078990:CDS
TCAAGAGCATCTGTTATTGG+AGG 0.609151 7_2:-78014336 Msa1078990:CDS
GTTGTTTATCGGAGAAGCGT+CGG 0.613172 7_2:+78016269 None:intergenic
GATTCATGGCAATGAACCCA+AGG 0.615849 7_2:+78012592 None:intergenic
AACATTACCAAGGATTGAAG+AGG 0.617361 7_2:-78015751 Msa1078990:CDS
AGCTGCTAGAAAGGTTGGCG+TGG 0.617848 7_2:-78015432 Msa1078990:CDS
TGGCGTGGTTCCTCGCAACA+AGG 0.620806 7_2:-78015417 Msa1078990:intron
TGAAGTTGCCATATCAATGC+TGG 0.621101 7_2:+78012898 None:intergenic
GAAGCCCGATGGTGTTCTGG+CGG 0.624470 7_2:+78014119 None:intergenic
AAAGCCCGTCGCTACAAGGA+GGG 0.625211 7_2:-78014604 Msa1078990:intron
AGCTTCCAAGATAAATCCAA+TGG 0.625508 7_2:-78013016 Msa1078990:CDS
ATGTAAGTTACCTTGTTGCG+AGG 0.626684 7_2:+78015407 None:intergenic
TCCTCAGTGCGCACTCCACG+TGG 0.629069 7_2:-78013493 Msa1078990:CDS
TATCATAAGCGAAAAGGACA+AGG 0.631796 7_2:-78014490 Msa1078990:CDS
CGTCTAGCTCTGGGATTCAG+GGG 0.637413 7_2:-78015566 Msa1078990:CDS
TCAGTGCGCACTCCACGTGG+TGG 0.638649 7_2:-78013490 Msa1078990:CDS
CCAGTCACTAACAGAACTAG+CGG 0.641140 7_2:+78014014 None:intergenic
GGAGCAGGAAGTTCAAGTGA+AGG 0.642645 7_2:-78013424 Msa1078990:CDS
TGTGGTTGCGCTCCACCACG+TGG 0.647882 7_2:+78013478 None:intergenic
TCTCACGGCTTGCTAAAACA+TGG 0.649356 7_2:-78013445 Msa1078990:CDS
TATCATGATAGACACTGTCC+TGG 0.654242 7_2:+78013143 None:intergenic
TTGATATGGCAACTTCAGCA+AGG 0.657298 7_2:-78012892 Msa1078990:CDS
GTTGCCATATCAATGCTGGT+AGG 0.660587 7_2:+78012902 None:intergenic
ACTGAAAGTGTTGATTTGGA+GGG 0.665976 7_2:-78015669 Msa1078990:CDS
AGTCACTAACAGAACTAGCG+GGG 0.666195 7_2:+78014016 None:intergenic
AAGGCAAAACACATAAATGG+TGG 0.672855 7_2:-78014471 Msa1078990:intron
AAAAGCCCGTCGCTACAAGG+AGG 0.677449 7_2:-78014605 Msa1078990:intron
AAGACTCAGGAAAAGATCAA+CGG 0.677530 7_2:-78013070 Msa1078990:CDS
CCGTGAGACACAGAAGAGTG+TGG 0.683825 7_2:+78013460 None:intergenic
TTGAGAAGGAAACATTACCA+AGG 0.691255 7_2:-78015761 Msa1078990:CDS
GTCACTAACAGAACTAGCGG+GGG 0.703043 7_2:+78014017 None:intergenic
TATGGAGTTATCGAATCACA+AGG 0.703342 7_2:-78012993 Msa1078990:CDS
AGGGGTGACACATTGATACG+GGG 0.749012 7_2:+78012922 None:intergenic
ACCACGTGGAGTGCGCACTG+AGG 0.755457 7_2:+78013492 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGTTTGAAAAAATATAT+TGG + chr7_2:78012521-78012540 None:intergenic 10.0%
!! AAAAAAAGAAATGAAAAATT+AGG + chr7_2:78012791-78012810 None:intergenic 10.0%
!!! TTTTTCAATTTCTTAAAAAT+AGG - chr7_2:78013040-78013059 Msa1078990:CDS 10.0%
!!! TCTTCAAATTTTTTTGAATT+CGG + chr7_2:78012877-78012896 None:intergenic 15.0%
!!! ATTTTTATCGTTTATCAAAA+TGG + chr7_2:78014020-78014039 None:intergenic 15.0%
!!! CAACAAAAATACTATAGTTT+TGG + chr7_2:78013629-78013648 None:intergenic 20.0%
!!! TTTCAATTGATTTTAGATGA+AGG - chr7_2:78014055-78014074 Msa1078990:CDS 20.0%
!!! ATCGTAAATGAAATTTTAAG+TGG - chr7_2:78014251-78014270 Msa1078990:CDS 20.0%
!!! AGTTAATTTGGATAATATTG+TGG + chr7_2:78014640-78014659 None:intergenic 20.0%
!! ATATGTGATTCTATTAACTA+TGG - chr7_2:78015364-78015383 Msa1078990:intron 20.0%
!! TAAAGAGATGAAGATTAAAT+TGG + chr7_2:78015403-78015422 None:intergenic 20.0%
!! AATGATTCATCAATATGATT+TGG + chr7_2:78015611-78015630 None:intergenic 20.0%
! TGTTTCAGAAATTTGAACTT+AGG + chr7_2:78012587-78012606 None:intergenic 25.0%
!! AAAAATGTGAACCTGAATTT+TGG + chr7_2:78012767-78012786 None:intergenic 25.0%
! AAGTTTCATTCAGATTCAAT+TGG + chr7_2:78012824-78012843 None:intergenic 25.0%
!!! TTCTATTGGTGTTAATGTTT+AGG - chr7_2:78013102-78013121 Msa1078990:CDS 25.0%
!!! TCTATTGGTGTTAATGTTTA+GGG - chr7_2:78013103-78013122 Msa1078990:CDS 25.0%
! GAGTTAACTAGTATAATTGA+AGG - chr7_2:78013141-78013160 Msa1078990:CDS 25.0%
! ATAATGCTTATTCAAAACTG+AGG - chr7_2:78013416-78013435 Msa1078990:CDS 25.0%
! TAATGCTTATTCAAAACTGA+GGG - chr7_2:78013417-78013436 Msa1078990:CDS 25.0%
! TATCAAAATGGAAAGCAATT+AGG + chr7_2:78014008-78014027 None:intergenic 25.0%
! TAAGTTAGTATAACTAGGAA+AGG + chr7_2:78014202-78014221 None:intergenic 25.0%
! AATCGTAAGTTAGTATAACT+AGG + chr7_2:78014207-78014226 None:intergenic 25.0%
!!! TTAATCCTCATTTTTGCATA+AGG - chr7_2:78014513-78014532 Msa1078990:CDS 25.0%
! AAATTTACTACAACTCAGAA+AGG + chr7_2:78014543-78014562 None:intergenic 25.0%
! ATATTATCCAAATTAACTCC+TGG - chr7_2:78014642-78014661 Msa1078990:intron 25.0%
! AGCAACTTATCTGATAATAT+TGG - chr7_2:78014714-78014733 Msa1078990:intron 25.0%
! GTATAAATTCTCAGATTTCT+CGG - chr7_2:78015051-78015070 Msa1078990:intron 25.0%
! AATTTGTATCATTATGACCT+TGG - chr7_2:78015295-78015314 Msa1078990:intron 25.0%
!!! TCTAGTTTTTTGTTTGCAAT+TGG + chr7_2:78015569-78015588 None:intergenic 25.0%
!!! TTGCTTAATTCTTGGTTTTT+AGG + chr7_2:78015974-78015993 None:intergenic 25.0%
! AAAAACCAAGAATTAAGCAA+AGG - chr7_2:78015974-78015993 Msa1078990:CDS 25.0%
!! AAAAGATTCATTTTGCAACA+TGG - chr7_2:78016072-78016091 Msa1078990:CDS 25.0%
! GAAGATTTAAATCCATGTAA+TGG - chr7_2:78016436-78016455 Msa1078990:five_prime_UTR 25.0%
TGGAAAGAAAAAATGTGACT+TGG + chr7_2:78012501-78012520 None:intergenic 30.0%
GGATTTCAAAGACAAACAAA+AGG + chr7_2:78012550-78012569 None:intergenic 30.0%
AAATTTGAACTTAGGAGTAG+CGG + chr7_2:78012579-78012598 None:intergenic 30.0%
TCTTTGACATCGTTGTTTAT+CGG + chr7_2:78012672-78012691 None:intergenic 30.0%
TGCTACAAAAATTGAACAGT+GGG - chr7_2:78012900-78012919 Msa1078990:CDS 30.0%
!! CTATTGGTGTTAATGTTTAG+GGG - chr7_2:78013104-78013123 Msa1078990:CDS 30.0%
!! TATAATTGAAGGTGTTGAGA+AGG - chr7_2:78013152-78013171 Msa1078990:CDS 30.0%
ATCAACACTTTCAGTTTCAA+AGG + chr7_2:78013253-78013272 None:intergenic 30.0%
!! TGAAACTGAAAGTGTTGATT+TGG - chr7_2:78013254-78013273 Msa1078990:CDS 30.0%
ATCATGTTGTCGCAATAAAA+AGG + chr7_2:78013673-78013692 None:intergenic 30.0%
!!! TTACATCCCAAGTTTTGAAA+GGG + chr7_2:78013856-78013875 None:intergenic 30.0%
!!! ATTACATCCCAAGTTTTGAA+AGG + chr7_2:78013857-78013876 None:intergenic 30.0%
! AGAAGTGCAATATCAATTCT+AGG - chr7_2:78013935-78013954 Msa1078990:CDS 30.0%
!! TGCAATATCAATTCTAGGAT+AGG - chr7_2:78013940-78013959 Msa1078990:CDS 30.0%
TGTGGTATTTGTGTAAAAGT+AGG + chr7_2:78014149-78014168 None:intergenic 30.0%
! TACTTTTACACAAATACCAC+AGG - chr7_2:78014148-78014167 Msa1078990:CDS 30.0%
TTAAATTAGTTGCATACCTG+TGG + chr7_2:78014167-78014186 None:intergenic 30.0%
TTGGATAATATTGTGGACTT+AGG + chr7_2:78014633-78014652 None:intergenic 30.0%
ATTATCAGATAAGTTGCTAC+CGG + chr7_2:78014712-78014731 None:intergenic 30.0%
TTTCTTCTTGCGGAATTAAA+TGG + chr7_2:78014747-78014766 None:intergenic 30.0%
TCAAGAAACAAAACTGAATC+TGG - chr7_2:78014834-78014853 Msa1078990:CDS 30.0%
CAAGAAACAAAACTGAATCT+GGG - chr7_2:78014835-78014854 Msa1078990:CDS 30.0%
!!! GGAGTGATTTTAACTTAGAA+GGG - chr7_2:78015072-78015091 Msa1078990:intron 30.0%
GAATTATCAGTCAAAGTGTA+AGG - chr7_2:78015114-78015133 Msa1078990:intron 30.0%
!! CAAAGATTGGTTTCTTTGAT+GGG - chr7_2:78015204-78015223 Msa1078990:intron 30.0%
!! AAAGATTGGTTTCTTTGATG+GGG - chr7_2:78015205-78015224 Msa1078990:intron 30.0%
TATGTCAAACATAAAGAAGG+CGG + chr7_2:78015240-78015259 None:intergenic 30.0%
GACTATGTCAAACATAAAGA+AGG + chr7_2:78015243-78015262 None:intergenic 30.0%
ATAGAATCACATATTACACG+TGG + chr7_2:78015358-78015377 None:intergenic 30.0%
TAATCTTCATCTCTTTATGC+AGG - chr7_2:78015406-78015425 Msa1078990:intron 30.0%
! CATCAATATGATTTGGATGT+GGG + chr7_2:78015604-78015623 None:intergenic 30.0%
! TCATCAATATGATTTGGATG+TGG + chr7_2:78015605-78015624 None:intergenic 30.0%
ACAAACCTTTGCTTAATTCT+TGG + chr7_2:78015982-78016001 None:intergenic 30.0%
! AATGAATCTTTTGCTGCAAA+GGG + chr7_2:78016064-78016083 None:intergenic 30.0%
! AAATGAATCTTTTGCTGCAA+AGG + chr7_2:78016065-78016084 None:intergenic 30.0%
AGAACAAGTACTTAAAGACT+TGG + chr7_2:78016281-78016300 None:intergenic 30.0%
TCAAAATATCCGATGCTAAA+AGG + chr7_2:78016360-78016379 None:intergenic 30.0%
GAACAAGAAGAAAATGAACT+TGG - chr7_2:78016378-78016397 Msa1078990:five_prime_UTR 30.0%
GGCAAATAAATACCATTACA+TGG + chr7_2:78016451-78016470 None:intergenic 30.0%
! TTGGTGGTAATTGGAAGAAA+CGG + chr7_2:78012748-78012767 None:intergenic 35.0%
TCCAATTACCACCAAAATTC+AGG - chr7_2:78012753-78012772 Msa1078990:exon 35.0%
!! ACCTGAATTTTGGTGGTAAT+TGG + chr7_2:78012757-78012776 None:intergenic 35.0%
! AATGTGAACCTGAATTTTGG+TGG + chr7_2:78012764-78012783 None:intergenic 35.0%
! CATTTTCAGAAAACGAAGCT+TGG - chr7_2:78012845-78012864 Msa1078990:CDS 35.0%
CTGCTACAAAAATTGAACAG+TGG - chr7_2:78012899-78012918 Msa1078990:CDS 35.0%
! TTCTTTGTTTCAGATGTCTG+AGG + chr7_2:78012934-78012953 None:intergenic 35.0%
TCTTTCGCAGATTGAACTTA+GGG + chr7_2:78012963-78012982 None:intergenic 35.0%
!!! ACTGCTTTTTTCACTAATGC+TGG - chr7_2:78012997-78013016 Msa1078990:CDS 35.0%
! GTGTTAATGTTTAGGGGTTT+TGG - chr7_2:78013110-78013129 Msa1078990:CDS 35.0%
TTGAGAAGGAAACATTACCA+AGG - chr7_2:78013166-78013185 Msa1078990:CDS 35.0%
AACATTACCAAGGATTGAAG+AGG - chr7_2:78013176-78013195 Msa1078990:CDS 35.0%
TATACATCCTCTTCAATCCT+TGG + chr7_2:78013186-78013205 None:intergenic 35.0%
!! AACTGAAAGTGTTGATTTGG+AGG - chr7_2:78013257-78013276 Msa1078990:CDS 35.0%
!! ACTGAAAGTGTTGATTTGGA+GGG - chr7_2:78013258-78013277 Msa1078990:CDS 35.0%
AAAAACTCACAGTCTCTAGT+TGG + chr7_2:78013390-78013409 None:intergenic 35.0%
!!! TCTTTTTTCAGCTGCTAGAA+AGG - chr7_2:78013486-78013505 Msa1078990:CDS 35.0%
TATTTCTTACCGAGTGAGAT+TGG - chr7_2:78013693-78013712 Msa1078990:intron 35.0%
TCTATGTAACCAATCTCACT+CGG + chr7_2:78013705-78013724 None:intergenic 35.0%
CACTTAACAGTAGGATCATA+AGG + chr7_2:78013746-78013765 None:intergenic 35.0%
AGTAATCTTGAGAAGAGACA+GGG + chr7_2:78013773-78013792 None:intergenic 35.0%
AAGTAATCTTGAGAAGAGAC+AGG + chr7_2:78013774-78013793 None:intergenic 35.0%
TGTTTCCCCTTTCAAAACTT+GGG - chr7_2:78013847-78013866 Msa1078990:CDS 35.0%
!!! TACATCCCAAGTTTTGAAAG+GGG + chr7_2:78013855-78013874 None:intergenic 35.0%
GTGGACATTGATATACATTC+AGG + chr7_2:78013899-78013918 None:intergenic 35.0%
TGATATTGCACTTCTGTGAT+GGG + chr7_2:78013930-78013949 None:intergenic 35.0%
TTGATATTGCACTTCTGTGA+TGG + chr7_2:78013931-78013950 None:intergenic 35.0%
!! ACACAATTTCAGCTTTAGAC+AGG + chr7_2:78013977-78013996 None:intergenic 35.0%
ATCTATTTCAAAGCCGTCAA+AGG - chr7_2:78014350-78014369 Msa1078990:CDS 35.0%
! GAATTTGCACTAGGCTTTAT+TGG + chr7_2:78014378-78014397 None:intergenic 35.0%
GAAATTGTGGAATTTGCACT+AGG + chr7_2:78014387-78014406 None:intergenic 35.0%
! TGCTCTTTTGGATGAAATTG+TGG + chr7_2:78014400-78014419 None:intergenic 35.0%
TCCACATATCATAAGCGAAA+AGG - chr7_2:78014431-78014450 Msa1078990:intron 35.0%
! TCCTTTTCGCTTATGATATG+TGG + chr7_2:78014435-78014454 None:intergenic 35.0%
TATCATAAGCGAAAAGGACA+AGG - chr7_2:78014437-78014456 Msa1078990:intron 35.0%
GACAAGGCAAAACACATAAA+TGG - chr7_2:78014453-78014472 Msa1078990:intron 35.0%
AAGGCAAAACACATAAATGG+TGG - chr7_2:78014456-78014475 Msa1078990:intron 35.0%
GCATTCCTTATGCAAAAATG+AGG + chr7_2:78014521-78014540 None:intergenic 35.0%
ATCTGTTATTGGAGGTTCAA+GGG - chr7_2:78014599-78014618 Msa1078990:CDS 35.0%
! TTGTCTTGGTTGATATTGAC+TGG + chr7_2:78014668-78014687 None:intergenic 35.0%
AGCAATAACGTTTCTTCTTG+CGG + chr7_2:78014757-78014776 None:intergenic 35.0%
GAACTATCACACATGTGTTT+AGG + chr7_2:78014969-78014988 None:intergenic 35.0%
AACACATGTGTGATAGTTCA+AGG - chr7_2:78014970-78014989 Msa1078990:intron 35.0%
TGATAGTAACTCTAGCAGAA+AGG - chr7_2:78015001-78015020 Msa1078990:intron 35.0%
!!! CGGAGTGATTTTAACTTAGA+AGG - chr7_2:78015071-78015090 Msa1078990:intron 35.0%
!!! TGATTTTAACTTAGAAGGGC+AGG - chr7_2:78015076-78015095 Msa1078990:intron 35.0%
CCATCAAAGAAACCAATCTT+TGG + chr7_2:78015206-78015225 None:intergenic 35.0%
!! CCAAAGATTGGTTTCTTTGA+TGG - chr7_2:78015203-78015222 Msa1078990:intron 35.0%
GATTGTTTGATCGAACAAGT+TGG - chr7_2:78015815-78015834 Msa1078990:intron 35.0%
GAACATAAATTCCAAGACTC+AGG - chr7_2:78015844-78015863 Msa1078990:intron 35.0%
AAGACTCAGGAAAAGATCAA+CGG - chr7_2:78015857-78015876 Msa1078990:intron 35.0%
AGCTTCCAAGATAAATCCAA+TGG - chr7_2:78015911-78015930 Msa1078990:intron 35.0%
CCATACCATTGGATTTATCT+TGG + chr7_2:78015919-78015938 None:intergenic 35.0%
CCAAGATAAATCCAATGGTA+TGG - chr7_2:78015916-78015935 Msa1078990:intron 35.0%
ATTCGATAACTCCATACCAT+TGG + chr7_2:78015930-78015949 None:intergenic 35.0%
TATGGAGTTATCGAATCACA+AGG - chr7_2:78015934-78015953 Msa1078990:CDS 35.0%
!!! GATTTTATCTCTGAAGTTGC+TGG + chr7_2:78016118-78016137 None:intergenic 35.0%
! AATGTGACTTGGCGAATAGA+TGG + chr7_2:78012490-78012509 None:intergenic 40.0%
TGGTGGTAATTGGAAGAAAC+GGG + chr7_2:78012747-78012766 None:intergenic 40.0%
CTCTTTCGCAGATTGAACTT+AGG + chr7_2:78012964-78012983 None:intergenic 40.0%
ATCTGCGAAAGAGTTTAGCT+TGG - chr7_2:78012971-78012990 Msa1078990:CDS 40.0%
! TCTGCGAAAGAGTTTAGCTT+GGG - chr7_2:78012972-78012991 Msa1078990:CDS 40.0%
TGTGAATCCATTTCGACCTT+AGG - chr7_2:78013213-78013232 Msa1078990:CDS 40.0%
GTGAATCCATTTCGACCTTA+GGG - chr7_2:78013214-78013233 Msa1078990:CDS 40.0%
!! TTTGGAGGGTGATTTGTTTG+AGG - chr7_2:78013272-78013291 Msa1078990:CDS 40.0%
CTTGTTGCTGGATTTCTGAA+TGG + chr7_2:78013310-78013329 None:intergenic 40.0%
!!! AGCAATTTTGGACTTGTTGC+TGG + chr7_2:78013322-78013341 None:intergenic 40.0%
! GGTAGCTGCATTAGCAATTT+TGG + chr7_2:78013334-78013353 None:intergenic 40.0%
CAGCTGAAAAAAGAGAGTCA+AGG + chr7_2:78013480-78013499 None:intergenic 40.0%
! TTTTCAGCTGCTAGAAAGGT+TGG - chr7_2:78013490-78013509 Msa1078990:CDS 40.0%
ATGTAAGTTACCTTGTTGCG+AGG + chr7_2:78013523-78013542 None:intergenic 40.0%
CAGGGTTAACACTTAACAGT+AGG + chr7_2:78013755-78013774 None:intergenic 40.0%
CTGTTTCCCCTTTCAAAACT+TGG - chr7_2:78013846-78013865 Msa1078990:CDS 40.0%
TTGGGATGTAATTCCACCTT+TGG - chr7_2:78013865-78013884 Msa1078990:CDS 40.0%
CATTCAGGTCAAAGTTCCAA+AGG + chr7_2:78013884-78013903 None:intergenic 40.0%
GATATTGCACTTCTGTGATG+GGG + chr7_2:78013929-78013948 None:intergenic 40.0%
! AACACTAAGCGATGCTCTTT+TGG + chr7_2:78014412-78014431 None:intergenic 40.0%
ATGGTGGTTAGTACTTGCAT+TGG - chr7_2:78014472-78014491 Msa1078990:CDS 40.0%
!! GTGTCAAGAGCATCTGTTAT+TGG - chr7_2:78014588-78014607 Msa1078990:CDS 40.0%
!! TCAAGAGCATCTGTTATTGG+AGG - chr7_2:78014591-78014610 Msa1078990:CDS 40.0%
CATCTGTTATTGGAGGTTCA+AGG - chr7_2:78014598-78014617 Msa1078990:CDS 40.0%
TCTGTTATTGGAGGTTCAAG+GGG - chr7_2:78014600-78014619 Msa1078990:CDS 40.0%
!!! GGAAGTTGCTGATTTTGTCT+TGG + chr7_2:78014682-78014701 None:intergenic 40.0%
TCAGCAACTTCCAAATCTTC+CGG - chr7_2:78014690-78014709 Msa1078990:intron 40.0%
TAAGTTGCTACCGGAAGATT+TGG + chr7_2:78014703-78014722 None:intergenic 40.0%
GCAAGAAGAAACGTTATTGC+TGG - chr7_2:78014756-78014775 Msa1078990:intron 40.0%
GCTAGAGTTACTATCAATGC+TGG + chr7_2:78014997-78015016 None:intergenic 40.0%
TCAGACACTAATGCAGATCA+AGG - chr7_2:78015029-78015048 Msa1078990:intron 40.0%
!!! TTTTAACTTAGAAGGGCAGG+AGG - chr7_2:78015079-78015098 Msa1078990:intron 40.0%
AAGAAACCAATCTTTGGCGA+AGG + chr7_2:78015200-78015219 None:intergenic 40.0%
GAAAAACCAATACGTGGCTA+TGG + chr7_2:78015336-78015355 None:intergenic 40.0%
CTTGCAGCTTTGCTTTGATT+TGG + chr7_2:78015529-78015548 None:intergenic 40.0%
TACATCACTGTCGCATGAAA+TGG - chr7_2:78015718-78015737 Msa1078990:CDS 40.0%
TATCATGATAGACACTGTCC+TGG + chr7_2:78015787-78015806 None:intergenic 40.0%
! GTTGATCTTTTCCTGAGTCT+TGG + chr7_2:78015858-78015877 None:intergenic 40.0%
TTGCCATATCAATGCTGGTA+GGG + chr7_2:78016027-78016046 None:intergenic 40.0%
TGAAGTTGCCATATCAATGC+TGG + chr7_2:78016032-78016051 None:intergenic 40.0%
TTGATATGGCAACTTCAGCA+AGG - chr7_2:78016035-78016054 Msa1078990:CDS 40.0%
TTTGTAATGCTTTCCAGCAC+AGG + chr7_2:78016151-78016170 None:intergenic 40.0%
!!! TGAGCAGTCTCTTTTTTCCT+TGG - chr7_2:78016318-78016337 Msa1078990:five_prime_UTR 40.0%
!!! GAGCAGTCTCTTTTTTCCTT+GGG - chr7_2:78016319-78016338 Msa1078990:five_prime_UTR 40.0%
! GCCATGAATCCTTTTAGCAT+CGG - chr7_2:78016348-78016367 Msa1078990:five_prime_UTR 40.0%
TCCGATGCTAAAAGGATTCA+TGG + chr7_2:78016352-78016371 None:intergenic 40.0%
CTTCTTCACATCACTTTCGC+CGG - chr7_2:78012620-78012639 Msa1078990:three_prime_UTR 45.0%
! GTTGTTTATCGGAGAAGCGT+CGG + chr7_2:78012661-78012680 None:intergenic 45.0%
!!! TTTAGGGGTTTTGGATGCTG+AGG - chr7_2:78013119-78013138 Msa1078990:CDS 45.0%
GGTTAAACTATCGCTCCCTA+AGG + chr7_2:78013232-78013251 None:intergenic 45.0%
TCAGGTCAAAGTTCCAAAGG+TGG + chr7_2:78013881-78013900 None:intergenic 45.0%
! TCTGTGATGGGGTTACTTTG+TGG + chr7_2:78013918-78013937 None:intergenic 45.0%
!! CAGCTTTAGACAGGACAACA+TGG + chr7_2:78013968-78013987 None:intergenic 45.0%
!! GGCTTTATTGGCACCTTTGA+CGG + chr7_2:78014366-78014385 None:intergenic 45.0%
TATTGGAGGTTCAAGGGGTA+CGG - chr7_2:78014605-78014624 Msa1078990:intron 45.0%
! TGACTGGCCAGGAGTTAATT+TGG + chr7_2:78014652-78014671 None:intergenic 45.0%
! TTGGTTGATATTGACTGGCC+AGG + chr7_2:78014663-78014682 None:intergenic 45.0%
AGTCACTAACAGAACTAGCG+GGG + chr7_2:78014914-78014933 None:intergenic 45.0%
CAGTCACTAACAGAACTAGC+GGG + chr7_2:78014915-78014934 None:intergenic 45.0%
CCAGTCACTAACAGAACTAG+CGG + chr7_2:78014916-78014935 None:intergenic 45.0%
!! TGTTAGTGACTGGTCTTCAG+AGG - chr7_2:78014923-78014942 Msa1078990:intron 45.0%
AAGTGTAAGGACTGCTTCTG+TGG - chr7_2:78015127-78015146 Msa1078990:intron 45.0%
AATACGTGGCTATGGCTTTC+AGG + chr7_2:78015328-78015347 None:intergenic 45.0%
TGAAAGCCATAGCCACGTAT+TGG - chr7_2:78015327-78015346 Msa1078990:intron 45.0%
CACGTGGAAAAACCAATACG+TGG + chr7_2:78015342-78015361 None:intergenic 45.0%
!! TCTCACGGCTTGCTAAAACA+TGG - chr7_2:78015482-78015501 Msa1078990:intron 45.0%
! GATTTGGATGTGGGTTTTGC+TGG + chr7_2:78015595-78015614 None:intergenic 45.0%
TAGGGGTGACACATTGATAC+GGG + chr7_2:78016009-78016028 None:intergenic 45.0%
GTAGGGGTGACACATTGATA+CGG + chr7_2:78016010-78016029 None:intergenic 45.0%
TGCCATATCAATGCTGGTAG+GGG + chr7_2:78016026-78016045 None:intergenic 45.0%
GTTGCCATATCAATGCTGGT+AGG + chr7_2:78016028-78016047 None:intergenic 45.0%
ATCAACCAACTTACCTGTGC+TGG - chr7_2:78016135-78016154 Msa1078990:intron 45.0%
GATTCATGGCAATGAACCCA+AGG + chr7_2:78016338-78016357 None:intergenic 45.0%
!!! TTTATTTATTTATTTTCTAT+TGG - chr7_2:78013088-78013107 Msa1078990:CDS 5.0%
!!! GTTTTTTTTTTTTTTTAAAA+AGG - chr7_2:78013603-78013622 Msa1078990:intron 5.0%
ACTTAGGAGTAGCGGCTAGT+GGG + chr7_2:78012571-78012590 None:intergenic 50.0%
AACTTAGGAGTAGCGGCTAG+TGG + chr7_2:78012572-78012591 None:intergenic 50.0%
ATCGCTCCCTAAGGTCGAAA+TGG + chr7_2:78013223-78013242 None:intergenic 50.0%
! ACCAGAATGTCGTCTAGCTC+TGG - chr7_2:78013351-78013370 Msa1078990:CDS 50.0%
!! CCAGAATGTCGTCTAGCTCT+GGG - chr7_2:78013352-78013371 Msa1078990:CDS 50.0%
!! TCGTCTAGCTCTGGGATTCA+GGG - chr7_2:78013360-78013379 Msa1078990:CDS 50.0%
!! TGAAGGCATCACCTGCTTCA+AGG - chr7_2:78014072-78014091 Msa1078990:CDS 50.0%
GCTGGTAGATTCCTTGAAGC+AGG + chr7_2:78014086-78014105 None:intergenic 50.0%
CCAGCTGTTGCGAGAGTAAT+CGG - chr7_2:78014101-78014120 Msa1078990:CDS 50.0%
CAGCTGTTGCGAGAGTAATC+GGG - chr7_2:78014102-78014121 Msa1078990:CDS 50.0%
TGAAAAAGCCCGTCGCTACA+AGG - chr7_2:78014319-78014338 Msa1078990:CDS 50.0%
TTTCTTGAAGCGAAGCCCGA+TGG + chr7_2:78014822-78014841 None:intergenic 50.0%
GTCACTAACAGAACTAGCGG+GGG + chr7_2:78014913-78014932 None:intergenic 50.0%
!! CCGCTAGTTCTGTTAGTGAC+TGG - chr7_2:78014913-78014932 Msa1078990:intron 50.0%
! TGAAGGTTTTGCAGGAGCTG+GGG + chr7_2:78015165-78015184 None:intergenic 50.0%
! CTGAAGGTTTTGCAGGAGCT+GGG + chr7_2:78015166-78015185 None:intergenic 50.0%
CCACACTCTTCTGTGTCTCA+CGG - chr7_2:78015467-78015486 Msa1078990:intron 50.0%
!! GGCTTGCTAAAACATGGAGC+AGG - chr7_2:78015488-78015507 Msa1078990:intron 50.0%
GGAGCAGGAAGTTCAAGTGA+AGG - chr7_2:78015503-78015522 Msa1078990:intron 50.0%
AGGGGTGACACATTGATACG+GGG + chr7_2:78016008-78016027 None:intergenic 50.0%
!! CACCCCTACCAGCATTGATA+TGG - chr7_2:78016021-78016040 Msa1078990:CDS 50.0%
GCTTTCCAGCACAGGTAAGT+TGG + chr7_2:78016143-78016162 None:intergenic 50.0%
TCGGAGTCGGAAATCATCGC+CGG + chr7_2:78012642-78012661 None:intergenic 55.0%
!! TATCGGAGAAGCGTCGGAGT+CGG + chr7_2:78012655-78012674 None:intergenic 55.0%
CCCAGAGCTAGACGACATTC+TGG + chr7_2:78013355-78013374 None:intergenic 55.0%
!! GTCGTCTAGCTCTGGGATTC+AGG - chr7_2:78013359-78013378 Msa1078990:CDS 55.0%
!! CGTCTAGCTCTGGGATTCAG+GGG - chr7_2:78013361-78013380 Msa1078990:CDS 55.0%
AGCTGCTAGAAAGGTTGGCG+TGG - chr7_2:78013495-78013514 Msa1078990:CDS 55.0%
TGCTAGATGTGCCACCCCAA+TGG - chr7_2:78013803-78013822 Msa1078990:CDS 55.0%
GCTAGATGTGCCACCCCAAT+GGG - chr7_2:78013804-78013823 Msa1078990:CDS 55.0%
CCAGTTGAACCAGCCCATTG+GGG + chr7_2:78013820-78013839 None:intergenic 55.0%
CCCAGTTGAACCAGCCCATT+GGG + chr7_2:78013821-78013840 None:intergenic 55.0%
!! CCCAATGGGCTGGTTCAACT+GGG - chr7_2:78013818-78013837 Msa1078990:CDS 55.0%
!! CCAATGGGCTGGTTCAACTG+GGG - chr7_2:78013819-78013838 Msa1078990:CDS 55.0%
CCGATTACTCTCGCAACAGC+TGG + chr7_2:78014104-78014123 None:intergenic 55.0%
AAAAGCCCGTCGCTACAAGG+AGG - chr7_2:78014322-78014341 Msa1078990:CDS 55.0%
AAAGCCCGTCGCTACAAGGA+GGG - chr7_2:78014323-78014342 Msa1078990:CDS 55.0%
TGACTCCCTCCTTGTAGCGA+CGG + chr7_2:78014331-78014350 None:intergenic 55.0%
! GAAGGTTTTGCAGGAGCTGG+GGG + chr7_2:78015164-78015183 None:intergenic 55.0%
! CCTGAAGGTTTTGCAGGAGC+TGG + chr7_2:78015167-78015186 None:intergenic 55.0%
CCAGCTCCTGCAAAACCTTC+AGG - chr7_2:78015164-78015183 Msa1078990:intron 55.0%
CGACTGCCTTCGCCAAAGAT+TGG - chr7_2:78015191-78015210 Msa1078990:intron 55.0%
! GGCTTTCAGGTGTGTCACCA+AGG + chr7_2:78015315-78015334 None:intergenic 55.0%
CCGTGAGACACAGAAGAGTG+TGG + chr7_2:78015470-78015489 None:intergenic 55.0%
ACTGTCCTGGTGATCGACAC+GGG + chr7_2:78015774-78015793 None:intergenic 55.0%
CACTGTCCTGGTGATCGACA+CGG + chr7_2:78015775-78015794 None:intergenic 55.0%
TGGCGTGGTTCCTCGCAACA+AGG - chr7_2:78013510-78013529 Msa1078990:intron 60.0%
GTTGAACCAGCCCATTGGGG+TGG + chr7_2:78013817-78013836 None:intergenic 60.0%
!! CCCCAATGGGCTGGTTCAAC+TGG - chr7_2:78013817-78013836 Msa1078990:CDS 60.0%
CCCCAGTTGAACCAGCCCAT+TGG + chr7_2:78013822-78013841 None:intergenic 60.0%
!! TGGGCTGGTTCAACTGGGGA+TGG - chr7_2:78013823-78013842 Msa1078990:CDS 60.0%
GACTCCCTCCTTGTAGCGAC+GGG + chr7_2:78014330-78014349 None:intergenic 60.0%
AAGCCCGATGGTGTTCTGGC+GGG + chr7_2:78014810-78014829 None:intergenic 60.0%
GAAGCCCGATGGTGTTCTGG+CGG + chr7_2:78014811-78014830 None:intergenic 60.0%
AGCGAAGCCCGATGGTGTTC+TGG + chr7_2:78014814-78014833 None:intergenic 60.0%
GGGCAGGAGGCTCAGCAAAA+TGG - chr7_2:78015092-78015111 Msa1078990:intron 60.0%
! CGCAGGCCTGAAGGTTTTGC+AGG + chr7_2:78015173-78015192 None:intergenic 60.0%
TCTTTGGCGAAGGCAGTCGC+AGG + chr7_2:78015190-78015209 None:intergenic 60.0%
TGGTGATCGACACGGGTCAG+TGG + chr7_2:78015767-78015786 None:intergenic 60.0%
! ACTGACCCGTGTCGATCACC+AGG - chr7_2:78015766-78015785 Msa1078990:CDS 60.0%
GATGTGCCACCCCAATGGGC+TGG - chr7_2:78013808-78013827 Msa1078990:CDS 65.0%
CCGATGGTGTTCTGGCGGGA+GGG + chr7_2:78014806-78014825 None:intergenic 65.0%
CCCTCCCGCCAGAACACCAT+CGG - chr7_2:78014803-78014822 Msa1078990:CDS 65.0%
CCTCCCGCCAGAACACCATC+GGG - chr7_2:78014804-78014823 Msa1078990:CDS 65.0%
GAAGGCAGTCGCAGGCCTGA+AGG + chr7_2:78015182-78015201 None:intergenic 65.0%
TCCTCAGTGCGCACTCCACG+TGG - chr7_2:78015434-78015453 Msa1078990:intron 65.0%
ACCACGTGGAGTGCGCACTG+AGG + chr7_2:78015438-78015457 None:intergenic 65.0%
TCAGTGCGCACTCCACGTGG+TGG - chr7_2:78015437-78015456 Msa1078990:intron 65.0%
TGTGGTTGCGCTCCACCACG+TGG + chr7_2:78015452-78015471 None:intergenic 65.0%
CTGGCGGGAGGGCGAGATGA+GGG + chr7_2:78014795-78014814 None:intergenic 70.0%
TCTGGCGGGAGGGCGAGATG+AGG + chr7_2:78014796-78014815 None:intergenic 70.0%
CCCGATGGTGTTCTGGCGGG+AGG + chr7_2:78014807-78014826 None:intergenic 70.0%
GCGGGAGGGCGAGATGAGGG+AGG + chr7_2:78014792-78014811 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 78012478 78016471 78012478 ID=Msa1078990;Name=Msa1078990
chr7_2 mRNA 78012478 78016471 78012478 ID=Msa1078990-mRNA-1;Parent=Msa1078990;Name=Msa1078990-mRNA-1;_AED=0.04;_eAED=0.04;_QI=167|1|1|1|1|1|8|288|754
chr7_2 exon 78012478 78013521 78012478 ID=Msa1078990-mRNA-1:exon:19370;Parent=Msa1078990-mRNA-1
chr7_2 exon 78013723 78014375 78013723 ID=Msa1078990-mRNA-1:exon:19369;Parent=Msa1078990-mRNA-1
chr7_2 exon 78014472 78014622 78014472 ID=Msa1078990-mRNA-1:exon:19368;Parent=Msa1078990-mRNA-1
chr7_2 exon 78014780 78014878 78014780 ID=Msa1078990-mRNA-1:exon:19367;Parent=Msa1078990-mRNA-1
chr7_2 exon 78015418 78015452 78015418 ID=Msa1078990-mRNA-1:exon:19366;Parent=Msa1078990-mRNA-1
chr7_2 exon 78015550 78015825 78015550 ID=Msa1078990-mRNA-1:exon:19365;Parent=Msa1078990-mRNA-1
chr7_2 exon 78015931 78016095 78015931 ID=Msa1078990-mRNA-1:exon:19364;Parent=Msa1078990-mRNA-1
chr7_2 exon 78016175 78016471 78016175 ID=Msa1078990-mRNA-1:exon:19363;Parent=Msa1078990-mRNA-1
chr7_2 five_prime_UTR 78016305 78016471 78016305 ID=Msa1078990-mRNA-1:five_prime_utr;Parent=Msa1078990-mRNA-1
chr7_2 CDS 78016175 78016304 78016175 ID=Msa1078990-mRNA-1:cds;Parent=Msa1078990-mRNA-1
chr7_2 CDS 78015931 78016095 78015931 ID=Msa1078990-mRNA-1:cds;Parent=Msa1078990-mRNA-1
chr7_2 CDS 78015550 78015825 78015550 ID=Msa1078990-mRNA-1:cds;Parent=Msa1078990-mRNA-1
chr7_2 CDS 78015418 78015452 78015418 ID=Msa1078990-mRNA-1:cds;Parent=Msa1078990-mRNA-1
chr7_2 CDS 78014780 78014878 78014780 ID=Msa1078990-mRNA-1:cds;Parent=Msa1078990-mRNA-1
chr7_2 CDS 78014472 78014622 78014472 ID=Msa1078990-mRNA-1:cds;Parent=Msa1078990-mRNA-1
chr7_2 CDS 78013723 78014375 78013723 ID=Msa1078990-mRNA-1:cds;Parent=Msa1078990-mRNA-1
chr7_2 CDS 78012766 78013521 78012766 ID=Msa1078990-mRNA-1:cds;Parent=Msa1078990-mRNA-1
chr7_2 three_prime_UTR 78012478 78012765 78012478 ID=Msa1078990-mRNA-1:three_prime_utr;Parent=Msa1078990-mRNA-1
Gene Sequence

>Msa1078990

ATGATTTCCGACTCCGACGCTTCTCCGATAAACAACGATGTCAAAGATCGACGTCTCAGCATCATCGACTTTCTCTCTGCTGATGATTCTCTTCTCGATCCCGTTTCTTCCAATTACCACCAAAATTCAGAAAACGAAGCTTGGTACACTCCGAATTCAAAAAAATTTGAAGATGCTGCTACAAAAATTGAACAGTGGGAAAACGAACCTCAGACATCTGAAACAAAGAAGAAAAACCCTAAGTTCAATCTGCGAAAGAGTTTAGCTTGGGACACTGCTTTTTTCACTAATGCTGGGGTTTTGGATGCTGAGGAGTTAACTAGTATAATTGAAGGTGTTGAGAAGGAAACATTACCAAGGATTGAAGAGGATGTATACAAATCATGTGAATCCATTTCGACCTTAGGGAGCGATAGTTTAACCTTTGAAACTGAAAGTGTTGATTTGGAGGGTGATTTGTTTGAGGATGTTCGAGCTTCCATTCAGAAATCCAGCAACAAGTCCAAAATTGCTAATGCAGCTACCAGAATGTCGTCTAGCTCTGGGATTCAGGGGTTGCCAACTAGAGACTCTGCTAGAAAGGTTGGCGTGGTTCCTCGCAACAAGATGAAGGCATCACCTGCTTCAAGGAATCTACCAGCTGTTGCGAGAGTAATCGGGAAGACGACAAACAAGAATAATCCTACTTTTACACAAATACCACAGCCCGTCGCTACAAGGAGGGAGTCATCTATTTCAAAGCCGTCAAAGGTGCCAATAAAGCCTAGTGCAAATTCCACAATTTCATCCAAAAGAGCATCGCTTAGTGTTCCACATATCATAAGCGAAAAGGACAAGGCAAAACACATAAATGGTGATAGAGTCAGTTTAGTGTCAAGAGCATCTGTTATTGGAGGTTCAAGGGGTACGGAGCCTAAGTCCACAATATTATCCAAATTAACTCCTGGCCAGTCAATATCAACCAAGACAAAATCAGCAACTTCCAAATCTTCCGGTAGCAACTTATCTGATAATATTGGTAAATCTCCATTTAATTCCGCAAGAAGAAACGTTATTGCTGGAACTTCAAAGCCTCCCTCATCTCGCCCTCCCGCCAGAACACCATCGGGCTTCGCTTCAAGAAACAAAACTGAATCTGGGAATTCTAGTCTCTCAAGCTTGATTTCTGCTAACAAACTTTCTTCTAGTATTTCCCCCGCTAGTTCTGTTAGTGACTGGTCTTCAGAGGCATCTGTATCAACTTCTATGCCTAAACACATGTGTGATAGTTCAAGGTCCAGCATTGATAGTAACTCTAGCAGAAAGGTTTTATCAGACACTAATGCAGATCAAGGTATAAATTCTCAGATTTCTCGGAGTGATTTTAACTTAGAAGGGCAGGAGGCTCAGCAAAATGGAATTATCAGTCAAAGTGTAAGGACTGCTTCTGTGGCAGCAGTTAATCCCCCAGCTCCTGCAAAACCTTCAGGCCTGCGACTGCCTTCGCCAAAGATTGGTTTCTTTGATGGGGCGAAATCCTCAGTGCGCACTCCACGTGGTGGAGCGCAACCACACTCTTCTGTGTCTCACGGCTTGCTAAAACATGGAGCAGGAAGTTCAAGTGAAGGCCAAATCAAAGCAAAGCTGCAAGCAGTGAGATGTATCAAGCCAATTGCAAACAAAAAACTAGATAACCAGCAAAACCCACATCCAAATCATATTGATGAATCATTAGATGTTGCAAATAAGACATCTAGTGCAGAGCAGAACGTCAAAAGCTCTTCTGAAATGCTGAAGTGTGCTGTTAAAAATGTTGAATATACATCACTGTCGCATGAAATGGAGAGAACTAATTATGATTTGCGTCCACTGACCCGTGTCGATCACCAGGACAGTGTCTATCATGATAATCAAGTTGATTGTTTGATCGAACAAGTTGGACTTATGAACATAAATTCCAAGACTCAGGAAAAGATCAACGGTGATTCTCTTTCTTTTTGTAAGACTGATATCAGCTTCCAAGATAAATCCAATGGTATGGAGTTATCGAATCACAAGGAGCTTTTTGATTATCCTAAAAACCAAGAATTAAGCAAAGGTTTGTCTACCCCGTATCAATGTGTCACCCCTACCAGCATTGATATGGCAACTTCAGCAAGGATACCCTTTGCAGCAAAAGATTCATTTTGCAACATGGATTGTACTGTTTTGACAGAACCAGCAACTTCAGAGATAAAATCAACCAACTTACCTGTGCTGGAAAGCATTACAAAAGAAAACAACTGA

Protein sequence

>Msa1078990

MISDSDASPINNDVKDRRLSIIDFLSADDSLLDPVSSNYHQNSENEAWYTPNSKKFEDAATKIEQWENEPQTSETKKKNPKFNLRKSLAWDTAFFTNAGVLDAEELTSIIEGVEKETLPRIEEDVYKSCESISTLGSDSLTFETESVDLEGDLFEDVRASIQKSSNKSKIANAATRMSSSSGIQGLPTRDSARKVGVVPRNKMKASPASRNLPAVARVIGKTTNKNNPTFTQIPQPVATRRESSISKPSKVPIKPSANSTISSKRASLSVPHIISEKDKAKHINGDRVSLVSRASVIGGSRGTEPKSTILSKLTPGQSISTKTKSATSKSSGSNLSDNIGKSPFNSARRNVIAGTSKPPSSRPPARTPSGFASRNKTESGNSSLSSLISANKLSSSISPASSVSDWSSEASVSTSMPKHMCDSSRSSIDSNSSRKVLSDTNADQGINSQISRSDFNLEGQEAQQNGIISQSVRTASVAAVNPPAPAKPSGLRLPSPKIGFFDGAKSSVRTPRGGAQPHSSVSHGLLKHGAGSSSEGQIKAKLQAVRCIKPIANKKLDNQQNPHPNHIDESLDVANKTSSAEQNVKSSSEMLKCAVKNVEYTSLSHEMERTNYDLRPLTRVDHQDSVYHDNQVDCLIEQVGLMNINSKTQEKINGDSLSFCKTDISFQDKSNGMELSNHKELFDYPKNQELSKGLSTPYQCVTPTSIDMATSARIPFAAKDSFCNMDCTVLTEPATSEIKSTNLPVLESITKENN*