AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0701250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701250 MtrunA17_Chr8g0379171 99.427 524 3 0 1 524 1 524 0.0 1059
Msa0701250 MtrunA17_Chr2g0284061 83.397 524 87 0 1 524 1 524 0.0 916
Msa0701250 MtrunA17_Chr3g0119521 72.587 518 141 1 8 524 3 520 0.0 793
Msa0701250 MtrunA17_Chr8g0364611 59.846 518 206 1 7 522 14 531 0.0 645
Msa0701250 MtrunA17_Chr3g0117941 59.653 518 207 1 7 522 13 530 0.0 633
Msa0701250 MtrunA17_Chr4g0059331 59.266 518 209 1 7 522 13 530 0.0 629
Msa0701250 MtrunA17_Chr1g0154001 57.534 511 217 0 12 522 35 545 0.0 607
Msa0701250 MtrunA17_Chr5g0414131 56.298 524 221 4 5 522 15 536 0.0 597
Msa0701250 MtrunA17_Chr1g0207021 54.356 528 232 4 1 522 1 525 0.0 572
Msa0701250 MtrunA17_Chr3g0134911 48.998 549 240 5 9 522 40 583 0.0 550
Msa0701250 MtrunA17_Chr5g0405471 51.206 539 238 6 5 522 26 560 0.0 544
Msa0701250 MtrunA17_Chr8g0367361 35.727 543 309 6 11 521 234 768 3.49e-112 350
Msa0701250 MtrunA17_Chr2g0320981 36.381 536 303 5 20 521 147 678 6.53e-111 344
Msa0701250 MtrunA17_Chr5g0412181 37.170 530 297 5 20 517 168 693 1.26e-109 342
Msa0701250 MtrunA17_Chr4g0027121 35.261 536 310 5 20 521 154 686 1.74e-104 328
Msa0701250 MtrunA17_Chr2g0332871 33.598 503 288 6 40 521 166 643 4.23e-96 305
Msa0701250 MtrunA17_Chr8g0379181 88.889 54 6 0 401 454 9 62 3.23e-26 101
Msa0701250 MtrunA17_Chr5g0418111 64.286 56 20 0 455 510 39 94 7.64e-19 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701250 AT2G34190.1 83.588 524 86 0 1 524 1 524 0.0 926
Msa0701250 AT2G05760.1 70.077 518 154 1 8 524 3 520 0.0 764
Msa0701250 AT5G62890.1 59.266 518 209 1 7 522 13 530 0.0 628
Msa0701250 AT5G62890.2 59.266 518 209 1 7 522 13 530 0.0 628
Msa0701250 AT5G62890.3 59.266 518 209 1 7 522 13 530 0.0 628
Msa0701250 AT1G60030.1 57.198 514 218 1 11 522 23 536 0.0 621
Msa0701250 AT2G26510.1 57.553 523 221 1 1 522 25 547 0.0 612
Msa0701250 AT1G10540.1 54.771 524 231 4 5 522 14 537 0.0 590
Msa0701250 AT5G49990.2 56.371 518 224 1 7 522 9 526 0.0 586
Msa0701250 AT5G49990.3 56.371 518 224 1 7 522 9 526 0.0 586
Msa0701250 AT5G49990.1 56.371 518 224 1 7 522 9 526 0.0 586
Msa0701250 AT5G49990.4 56.371 518 224 1 7 522 9 526 0.0 586
Msa0701250 AT1G49960.1 55.832 523 228 2 3 522 2 524 0.0 577
Msa0701250 AT1G65550.1 50.758 528 248 5 5 522 14 539 0.0 552
Msa0701250 AT5G62890.4 58.482 448 186 0 7 454 13 460 0.0 535
Msa0701250 AT2G26510.3 57.867 375 158 0 1 375 25 399 1.11e-147 430
Msa0701250 AT1G10540.2 55.200 375 164 3 5 375 14 388 3.07e-144 421
Msa0701250 AT2G26510.2 57.735 362 153 0 1 362 25 386 6.75e-142 416
Msa0701250 AT5G25420.1 42.986 442 171 5 5 439 26 393 6.88e-123 367
Msa0701250 AT2G27810.1 35.261 536 310 6 20 521 169 701 1.36e-102 324
Msa0701250 AT4G38050.1 35.581 534 308 5 20 521 175 704 3.08e-99 315
Msa0701250 AT2G27810.4 33.750 560 310 7 20 521 169 725 2.90e-97 310
Msa0701250 AT2G27810.2 36.256 422 250 4 20 423 169 589 2.39e-82 268
Msa0701250 AT2G27810.3 36.533 375 219 4 20 376 169 542 9.03e-71 236

Find 150 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAGCATACAAATTATTT+TGG 0.101959 4_4:+72646176 Msa0701250:CDS
TAATTTGTTTCAGGTAAATT+TGG 0.196029 4_4:+72647768 Msa0701250:intron
TTCATTTCTTGTTCCTTCAA+TGG 0.226954 4_4:+72644812 Msa0701250:CDS
TTTGATGCTGGCCACTCTTT+TGG 0.230201 4_4:+72647178 Msa0701250:CDS
GTAATTACATTAGTTGGTTT+TGG 0.246380 4_4:+72646392 Msa0701250:CDS
GGTGAATGACTTATCTCTTC+TGG 0.248677 4_4:-72644573 None:intergenic
AATTGGGTGGACAATGAATT+TGG 0.256401 4_4:-72648765 None:intergenic
TCATAACAACCACAGTGATA+TGG 0.275276 4_4:+72646908 Msa0701250:CDS
ATTGATTATTGCTGTGTTCT+TGG 0.284940 4_4:+72648405 Msa0701250:CDS
ATTTCAGAGAATACACTATC+AGG 0.289187 4_4:+72648057 Msa0701250:CDS
CCATGGCATTCCTCTATCTT+TGG 0.292772 4_4:-72648455 None:intergenic
TTCTTCAAGCTAGTAGGATT+TGG 0.295874 4_4:+72644493 Msa0701250:five_prime_UTR
TTCACCAATGGATCAACTTC+AGG 0.304968 4_4:+72644590 Msa0701250:CDS
GGACAATACTCTTGACTATA+AGG 0.306775 4_4:+72648426 Msa0701250:CDS
AGCAAAGTTGGAGGTGATTA+TGG 0.308536 4_4:+72644539 Msa0701250:exon
AAACCAACTAATGTAATTAC+TGG 0.315074 4_4:-72646389 None:intergenic
AAGAATAGAAGATGGTATTC+AGG 0.318777 4_4:-72648369 None:intergenic
AACCTTTCCAATGCAGCAAT+TGG 0.318940 4_4:-72648782 None:intergenic
ATGATATTCTTTGCAATGTT+AGG 0.319292 4_4:+72647650 Msa0701250:CDS
CTCCTATCACTGTTGGTAAC+CGG 0.320169 4_4:-72645879 None:intergenic
AAGAGACATGTTAGAGTTAG+AGG 0.320505 4_4:+72648584 Msa0701250:three_prime_UTR
GTGGGGACTTGTGTTGAAAT+TGG 0.325063 4_4:+72646547 Msa0701250:CDS
AAATATGGGCTATTTGTTCT+AGG 0.325670 4_4:+72646208 Msa0701250:CDS
TCATTTCTTGTTCCTTCAAT+GGG 0.346165 4_4:+72644813 Msa0701250:CDS
GTGTATTCTCTGAAATATTC+AGG 0.350685 4_4:-72648050 None:intergenic
ATCTCATTTCTTCCGCTCCT+TGG 0.363626 4_4:+72647016 Msa0701250:CDS
TATAGATTCAAATCCATCTT+GGG 0.371990 4_4:+72644626 Msa0701250:CDS
CTTGTTTGTAGTGTTCTCTC+AGG 0.378594 4_4:+72646585 Msa0701250:CDS
AAAAGAAGGGTCACGAATAA+TGG 0.387784 4_4:-72645932 None:intergenic
ACAGTGGAGACAATACTTCT+TGG 0.392031 4_4:+72644744 Msa0701250:intron
TTTGGGATTTAGTCAAATAT+GGG 0.396617 4_4:+72646194 Msa0701250:CDS
GAGCCGTGGTATCGGTTGGC+AGG 0.401838 4_4:+72647417 Msa0701250:CDS
GTTCCAGTAATTACATTAGT+TGG 0.413657 4_4:+72646386 Msa0701250:CDS
TGCCAACACGGTTGCTTCCT+AGG 0.415342 4_4:-72647595 None:intergenic
TGTCCACCCAATTGCTGCAT+TGG 0.415729 4_4:+72648775 Msa0701250:three_prime_UTR
GGTATCGGTTGGCAGGGAAT+TGG 0.421613 4_4:+72647424 Msa0701250:CDS
AGGGTTATTCAAGTTTCTGC+TGG 0.424755 4_4:+72647623 Msa0701250:CDS
TACACTATCAGGGCCTTTCA+TGG 0.429220 4_4:+72648068 Msa0701250:CDS
TCCCAAAATAATTTGTATGC+TGG 0.431042 4_4:-72646178 None:intergenic
AGAGAGAATGTAGGACTCCT+AGG 0.436161 4_4:+72647578 Msa0701250:intron
CATAACAACCACAGTGATAT+GGG 0.441500 4_4:+72646909 Msa0701250:CDS
CAACATTTCTTCAAGCTAGT+AGG 0.442413 4_4:+72644487 Msa0701250:five_prime_UTR
ATAATCATAAGTAGCAAAGT+TGG 0.442518 4_4:+72644527 Msa0701250:five_prime_UTR
ACCTTTCCAATGCAGCAATT+GGG 0.443337 4_4:-72648781 None:intergenic
TGTTGCAGGATGATAAAGTA+AGG 0.446203 4_4:+72645794 Msa0701250:intron
GTATAGATTCAAATCCATCT+TGG 0.446520 4_4:+72644625 Msa0701250:CDS
AGGAGGATCATATGCATTCA+TGG 0.453580 4_4:+72645897 Msa0701250:CDS
AAAGGTTCGATATATGTTCA+TGG 0.456741 4_4:+72648798 Msa0701250:three_prime_UTR
TCATGTAATAACAGAACAAA+AGG 0.465001 4_4:+72648656 Msa0701250:three_prime_UTR
ACATCATTTCCACCCATTGA+AGG 0.466107 4_4:-72644825 None:intergenic
AACATAGTTGTAGGACAGAC+AGG 0.467914 4_4:+72646989 Msa0701250:CDS
TCACGAATAATGGATACAAT+GGG 0.468928 4_4:-72645922 None:intergenic
TGCTCATACCAAAGCTGGAT+GGG 0.470991 4_4:+72648094 Msa0701250:CDS
TGCAAACACTGTTTGGAACC+CGG 0.473980 4_4:+72645860 Msa0701250:CDS
AATGATAGATGACCCACAAT+TGG 0.477393 4_4:+72645957 Msa0701250:CDS
TCCTATCACTGTTGGTAACC+GGG 0.477745 4_4:-72645878 None:intergenic
GCCAACCGATACCACGGCTC+AGG 0.478834 4_4:-72647414 None:intergenic
AGAAATGTACTAACCAATTG+TGG 0.479205 4_4:-72645970 None:intergenic
GAATAGACAAGCCTAAGAAA+AGG 0.479304 4_4:-72648028 None:intergenic
GGTCCTGCTCATACCAAAGC+TGG 0.479360 4_4:+72648089 Msa0701250:CDS
TCACCAATGGATCAACTTCA+GGG 0.480974 4_4:+72644591 Msa0701250:CDS
GAAACTCACCCATCCAGCTT+TGG 0.485860 4_4:-72648102 None:intergenic
GTACACAGAAACTGTTGAAC+CGG 0.486278 4_4:-72647479 None:intergenic
ACCCGGTTACCAACAGTGAT+AGG 0.489452 4_4:+72645877 Msa0701250:CDS
ATTGAAGGAACAAGAAATGA+AGG 0.499359 4_4:-72644810 None:intergenic
TTGTGTTCAGAGAGATTAGC+GGG 0.499435 4_4:-72644467 None:intergenic
GCACCCCACTCAAGAGGGTA+TGG 0.499949 4_4:-72647148 None:intergenic
ATGTAACTCAACATAGTTGT+AGG 0.501947 4_4:+72646980 Msa0701250:CDS
TCATCTATCATTGCAAAAGA+AGG 0.502196 4_4:-72645946 None:intergenic
AAACCCTGAAGTTGATCCAT+TGG 0.502837 4_4:-72644594 None:intergenic
AAGAAGCGGTTGAGATTGAA+AGG 0.503438 4_4:-72648535 None:intergenic
AACCGGTTAGTGTTCCGAAA+AGG 0.514137 4_4:-72647462 None:intergenic
ATGAGGAACCTCTTTATCAC+TGG 0.516659 4_4:+72647999 Msa0701250:CDS
CATGTCCTGAGCCGTGGTAT+CGG 0.518412 4_4:+72647409 Msa0701250:CDS
AATAGACAAGCCTAAGAAAA+GGG 0.522987 4_4:-72648027 None:intergenic
TTTCTTGTTCCTTCAATGGG+TGG 0.525960 4_4:+72644816 Msa0701250:CDS
GCAATAATCAATGCAACAGT+TGG 0.533111 4_4:-72648394 None:intergenic
AAGGACAGTGCCAAAGATAG+AGG 0.534675 4_4:+72648445 Msa0701250:CDS
TCCTGAGCCGTGGTATCGGT+TGG 0.538613 4_4:+72647413 Msa0701250:CDS
TATGATCCTCCTATCACTGT+TGG 0.541705 4_4:-72645886 None:intergenic
GGTGCTCCTACATTTGATGC+TGG 0.543276 4_4:+72647166 Msa0701250:CDS
CCACGGCTCAGGACATGAGC+AGG 0.543664 4_4:-72647403 None:intergenic
CATCCAGCTTTGGTATGAGC+AGG 0.545272 4_4:-72648092 None:intergenic
GAAATGTACTAACCAATTGT+GGG 0.546919 4_4:-72645969 None:intergenic
GAGTGGCCAGCATCAAATGT+AGG 0.547055 4_4:-72647172 None:intergenic
CTGCTCATACCAAAGCTGGA+TGG 0.547379 4_4:+72648093 Msa0701250:CDS
GTCACGAATAATGGATACAA+TGG 0.549123 4_4:-72645923 None:intergenic
CAGAAACTTGAATAACCCTT+CGG 0.550365 4_4:-72647619 None:intergenic
CTCAGGACATGAGCAGGCGG+TGG 0.550799 4_4:-72647397 None:intergenic
ACCCAATTGCTGCATTGGAA+AGG 0.551724 4_4:+72648780 Msa0701250:three_prime_UTR
CAACTATGTTGAGTTACATC+CGG 0.554296 4_4:-72646976 None:intergenic
GGGCAACACCAGTGATAAAG+AGG 0.555822 4_4:-72648007 None:intergenic
GACATGAGCAGGCGGTGGTG+TGG 0.560084 4_4:-72647392 None:intergenic
CATGCAAACATACCCCAAGA+TGG 0.560663 4_4:-72644639 None:intergenic
TAACCCTTCGGCTGCCAACA+CGG 0.560723 4_4:-72647607 None:intergenic
TCAAGCTAGTAGGATTTGGA+AGG 0.562599 4_4:+72644497 Msa0701250:five_prime_UTR
AAACTAAGTGTCACAGTAGT+GGG 0.565633 4_4:+72644407 Msa0701250:five_prime_UTR
ATTTGACAGAGGTTTCCCTA+TGG 0.567601 4_4:+72646418 Msa0701250:CDS
GTTCCTCATTGAATTCATGT+TGG 0.571510 4_4:-72647985 None:intergenic
ATCATAAGTAGCAAAGTTGG+AGG 0.573057 4_4:+72644530 Msa0701250:five_prime_UTR
GAAACTAAGTGTCACAGTAG+TGG 0.573297 4_4:+72644406 Msa0701250:five_prime_UTR
GCAACCGTGTTGGCAGCCGA+AGG 0.576172 4_4:+72647603 Msa0701250:CDS
CACTACAAACAAGATTAGCA+TGG 0.579230 4_4:-72646575 None:intergenic
CTCCTAGGAAGCAACCGTGT+TGG 0.580038 4_4:+72647593 Msa0701250:CDS
TTTCAGAGAATACACTATCA+GGG 0.580243 4_4:+72648058 Msa0701250:CDS
AGTTGGTGAAGAATAGAAGA+TGG 0.581474 4_4:-72648377 None:intergenic
CCTGCTCATGTCCTGAGCCG+TGG 0.582782 4_4:+72647403 Msa0701250:CDS
TTTCCAATGCAGCAATTGGG+TGG 0.585119 4_4:-72648778 None:intergenic
AGCCGTGGTATCGGTTGGCA+GGG 0.590320 4_4:+72647418 Msa0701250:CDS
GGTATGAGCAGGACCATGAA+AGG 0.591544 4_4:-72648081 None:intergenic
AATAAAACCACTAAAAGTGT+TGG 0.592486 4_4:-72648735 None:intergenic
CATCTATCATTGCAAAAGAA+GGG 0.595562 4_4:-72645945 None:intergenic
TTCCCTGCCAACCGATACCA+CGG 0.595568 4_4:-72647420 None:intergenic
AGAGCAAATCTCTCTAGTAT+CGG 0.602160 4_4:-72646883 None:intergenic
CATCTTGACAGAGAGAATGT+AGG 0.602743 4_4:+72647569 Msa0701250:intron
ACTACAAACAAGATTAGCAT+GGG 0.605867 4_4:-72646574 None:intergenic
CAGCCATCATTCCAAAAGAG+TGG 0.607490 4_4:-72647189 None:intergenic
AGATTCCATACCCTCTTGAG+TGG 0.607942 4_4:+72647143 Msa0701250:CDS
ATGCTACAATTAGTGCACCT+TGG 0.608851 4_4:-72646155 None:intergenic
TAGGAGCACCCCACTCAAGA+GGG 0.617390 4_4:-72647153 None:intergenic
AGAGATAAGTCATTCACCAA+TGG 0.619804 4_4:+72644578 Msa0701250:CDS
GCACATCTATTGACAGCGAG+TGG 0.619907 4_4:+72646937 Msa0701250:CDS
GATTCCATACCCTCTTGAGT+GGG 0.620879 4_4:+72647144 Msa0701250:CDS
GTAGGAGCACCCCACTCAAG+AGG 0.622953 4_4:-72647154 None:intergenic
AAGATAGAGGAATGCCATGG+TGG 0.624875 4_4:+72648458 Msa0701250:CDS
TATGTTGAGTTACATCCGGC+CGG 0.624907 4_4:-72646972 None:intergenic
CAACCGTGTTGGCAGCCGAA+GGG 0.626544 4_4:+72647604 Msa0701250:CDS
AGATAGAGGAATGCCATGGT+GGG 0.635902 4_4:+72648459 Msa0701250:CDS
GTTGCAGGATGATAAAGTAA+GGG 0.641584 4_4:+72645795 Msa0701250:intron
TAAGTGTCACAGTAGTGGGA+AGG 0.643084 4_4:+72644411 Msa0701250:five_prime_UTR
TGGAGCATACAAACACCGGC+CGG 0.643571 4_4:+72646957 Msa0701250:CDS
ATAGATTCAAATCCATCTTG+GGG 0.643928 4_4:+72644627 Msa0701250:CDS
CGGTTACCAACAGTGATAGG+AGG 0.653551 4_4:+72645880 Msa0701250:CDS
GCAGGATGATAAAGTAAGGG+TGG 0.654485 4_4:+72645798 Msa0701250:intron
AGCACAATGAGAGCAGTCCA+AGG 0.659630 4_4:+72646138 Msa0701250:CDS
CGAGTGGAGCATACAAACAC+CGG 0.663938 4_4:+72646953 Msa0701250:CDS
CGGCTCAGGACATGAGCAGG+CGG 0.664877 4_4:-72647400 None:intergenic
ATTCCATACCCTCTTGAGTG+GGG 0.671790 4_4:+72647145 Msa0701250:CDS
GTTCTAAACTTAGCCCACCA+TGG 0.673056 4_4:-72648472 None:intergenic
GTTGTGTTCAGAGAGATTAG+CGG 0.673069 4_4:-72644468 None:intergenic
TATTGGTACCAACCAAGGAG+CGG 0.679674 4_4:-72647028 None:intergenic
ATTACTGGAACCATTCCAAG+TGG 0.685617 4_4:-72646374 None:intergenic
CCAAAGATAGAGGAATGCCA+TGG 0.686802 4_4:+72648455 Msa0701250:CDS
TCACCAACATGAATTCAATG+AGG 0.689628 4_4:+72647982 Msa0701250:CDS
ACATAGTTGTAGGACAGACA+GGG 0.696081 4_4:+72646990 Msa0701250:CDS
TCTATGATGGAGGAAAGAAG+CGG 0.698502 4_4:-72648549 None:intergenic
TTACTGGAACCATTCCAAGT+GGG 0.700944 4_4:-72646373 None:intergenic
CACGAATAATGGATACAATG+GGG 0.733637 4_4:-72645921 None:intergenic
TGCATATGCCCATATCACTG+TGG 0.777461 4_4:-72646917 None:intergenic
TGTGTTCAGAGAGATTAGCG+GGG 0.790744 4_4:-72644466 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTAATAAATGTGTTT+TGG - chr4_4:72645245-72645264 None:intergenic 10.0%
!!! ATCTAAATATATATTTTTGT+TGG + chr4_4:72646487-72646506 Msa0701250:intron 10.0%
!! CTTCACAAATATATAAAATA+AGG - chr4_4:72646238-72646257 None:intergenic 15.0%
!!! ATATGGTTTTCATTTTTTAT+GGG + chr4_4:72647526-72647545 Msa0701250:intron 15.0%
!!! TGGTTTTCAACATTATATTT+TGG + chr4_4:72644764-72644783 Msa0701250:CDS 20.0%
!! TAGTTAAAAGAATTGAAGTT+AGG - chr4_4:72644860-72644879 None:intergenic 20.0%
!!! TTATTTTTGATAAGATGCAA+AGG + chr4_4:72645593-72645612 Msa0701250:intron 20.0%
!!! TATTTTTGATAAGATGCAAA+GGG + chr4_4:72645594-72645613 Msa0701250:intron 20.0%
!!! TATTTTCTTTTTATCGTGTT+TGG + chr4_4:72645627-72645646 Msa0701250:intron 20.0%
!!! TTTAAGTTTAAATTAGCTTG+TGG + chr4_4:72646640-72646659 Msa0701250:intron 20.0%
!! CAAAGAAAATATTGAACTAT+TGG + chr4_4:72647087-72647106 Msa0701250:intron 20.0%
!! TATCATTGGAAAAATTATAC+CGG + chr4_4:72647259-72647278 Msa0701250:intron 20.0%
!!! TTTTCTTATTCTCATTCATA+TGG + chr4_4:72647509-72647528 Msa0701250:intron 20.0%
!!! CATATGGTTTTCATTTTTTA+TGG + chr4_4:72647525-72647544 Msa0701250:intron 20.0%
!!! TAATTTGTTTCAGGTAAATT+TGG + chr4_4:72647768-72647787 Msa0701250:intron 20.0%
!!! TATGTAAGAATTTTCTATGA+TGG - chr4_4:72648565-72648584 None:intergenic 20.0%
! ATAATCATAAGTAGCAAAGT+TGG + chr4_4:72644527-72644546 Msa0701250:five_prime_UTR 25.0%
! TATAGATTCAAATCCATCTT+GGG + chr4_4:72644626-72644645 Msa0701250:CDS 25.0%
!!! CAACATTATATTTTGGCATT+AGG + chr4_4:72644771-72644790 Msa0701250:CDS 25.0%
!! TAATTCCCTTTTATTGTGTT+TGG + chr4_4:72644970-72644989 Msa0701250:intron 25.0%
! TTGATCCAAACACAATAAAA+GGG - chr4_4:72644978-72644997 None:intergenic 25.0%
! ATTGATCCAAACACAATAAA+AGG - chr4_4:72644979-72644998 None:intergenic 25.0%
!!! TGGATCAATGTTTTAACAAT+CGG + chr4_4:72644990-72645009 Msa0701250:intron 25.0%
!!! TTTGTCTATTGGTTTAATCA+TGG + chr4_4:72645101-72645120 Msa0701250:intron 25.0%
!! TGAATTTTACACTGTTGTTA+AGG + chr4_4:72645173-72645192 Msa0701250:intron 25.0%
! AAATACCCATGACTATTTAT+TGG + chr4_4:72645433-72645452 Msa0701250:intron 25.0%
! TCTATCCAATAAATAGTCAT+GGG - chr4_4:72645441-72645460 None:intergenic 25.0%
!!! CTACTTTGATTTGATTTTGA+TGG + chr4_4:72645554-72645573 Msa0701250:intron 25.0%
!!! ATTTTTTTTGTCTTGTGTAC+TGG + chr4_4:72645653-72645672 Msa0701250:intron 25.0%
!! ATCCAGCATACAAATTATTT+TGG + chr4_4:72646176-72646195 Msa0701250:CDS 25.0%
!! TCCAGCATACAAATTATTTT+GGG + chr4_4:72646177-72646196 Msa0701250:CDS 25.0%
!!! TTTTGGGATTTAGTCAAATA+TGG + chr4_4:72646193-72646212 Msa0701250:CDS 25.0%
!! TTTGGGATTTAGTCAAATAT+GGG + chr4_4:72646194-72646213 Msa0701250:CDS 25.0%
! AAACCAACTAATGTAATTAC+TGG - chr4_4:72646392-72646411 None:intergenic 25.0%
!!! GTAATTACATTAGTTGGTTT+TGG + chr4_4:72646392-72646411 Msa0701250:CDS 25.0%
! CAACACATCATAATACATTA+AGG - chr4_4:72646826-72646845 None:intergenic 25.0%
! CTTCATAAAATGACTATCAT+TGG + chr4_4:72647245-72647264 Msa0701250:intron 25.0%
!!! TTATTATTTTGACAGTCAAC+TGG + chr4_4:72647337-72647356 Msa0701250:intron 25.0%
! ATGATATTCTTTGCAATGTT+AGG + chr4_4:72647650-72647669 Msa0701250:CDS 25.0%
! TGAAACAAATTATGAAACAC+AGG - chr4_4:72647760-72647779 None:intergenic 25.0%
!!! TGTGTTTCATAATTTGTTTC+AGG + chr4_4:72647759-72647778 Msa0701250:intron 25.0%
! AGTATATAGCAGCAAAAATA+GGG - chr4_4:72647818-72647837 None:intergenic 25.0%
!! AGCATCTATTGATAATTGTT+TGG + chr4_4:72647893-72647912 Msa0701250:intron 25.0%
!!! ATATTTTTTTCAGCTTCTGT+AGG + chr4_4:72647942-72647961 Msa0701250:intron 25.0%
!!! TATTTTTTTCAGCTTCTGTA+GGG + chr4_4:72647943-72647962 Msa0701250:intron 25.0%
! TCATGTAATAACAGAACAAA+AGG + chr4_4:72648656-72648675 Msa0701250:three_prime_UTR 25.0%
!! ATTTTTACCAACACTTTTAG+TGG + chr4_4:72648728-72648747 Msa0701250:three_prime_UTR 25.0%
!! AATAAAACCACTAAAAGTGT+TGG - chr4_4:72648738-72648757 None:intergenic 25.0%
!! AAACACCGAGAATTTTTATT+TGG + chr4_4:72648830-72648849 Msa0701250:three_prime_UTR 25.0%
GTATAGATTCAAATCCATCT+TGG + chr4_4:72644625-72644644 Msa0701250:CDS 30.0%
ATAGATTCAAATCCATCTTG+GGG + chr4_4:72644627-72644646 Msa0701250:CDS 30.0%
!! GTGTTTTGAATTGTTAACAG+TGG + chr4_4:72644728-72644747 Msa0701250:intron 30.0%
ATTGAAGGAACAAGAAATGA+AGG - chr4_4:72644813-72644832 None:intergenic 30.0%
TTCATTTCTTGTTCCTTCAA+TGG + chr4_4:72644812-72644831 Msa0701250:CDS 30.0%
TCATTTCTTGTTCCTTCAAT+GGG + chr4_4:72644813-72644832 Msa0701250:CDS 30.0%
AACTGGTTGAATTGGAAATT+GGG + chr4_4:72645044-72645063 Msa0701250:intron 30.0%
GTATGTTTAACAGGTTGTAA+CGG + chr4_4:72645067-72645086 Msa0701250:intron 30.0%
! TAACCTACTAGTTTGTCTAT+TGG + chr4_4:72645090-72645109 Msa0701250:intron 30.0%
AAACCAATAGACAAACTAGT+AGG - chr4_4:72645096-72645115 None:intergenic 30.0%
AGTTGAATCAGATTGAATAG+TGG + chr4_4:72645138-72645157 Msa0701250:intron 30.0%
GACAATGAAAAATACTAGCA+AGG + chr4_4:72645369-72645388 Msa0701250:intron 30.0%
CTCTATCCAATAAATAGTCA+TGG - chr4_4:72645442-72645461 None:intergenic 30.0%
CATGACTATTTATTGGATAG+AGG + chr4_4:72645440-72645459 Msa0701250:intron 30.0%
!! TTGATTTTGATGGATGATAC+TGG + chr4_4:72645564-72645583 Msa0701250:intron 30.0%
TGAATATCAATCCTCTATCT+TGG - chr4_4:72645762-72645781 None:intergenic 30.0%
CATATATTGCTTATTGTTGC+AGG + chr4_4:72645780-72645799 Msa0701250:intron 30.0%
!!! CAAACTCTACTTTTTGTTGA+AGG + chr4_4:72645823-72645842 Msa0701250:CDS 30.0%
!! TCACGAATAATGGATACAAT+GGG - chr4_4:72645925-72645944 None:intergenic 30.0%
CATCTATCATTGCAAAAGAA+GGG - chr4_4:72645948-72645967 None:intergenic 30.0%
TCATCTATCATTGCAAAAGA+AGG - chr4_4:72645949-72645968 None:intergenic 30.0%
GAAATGTACTAACCAATTGT+GGG - chr4_4:72645972-72645991 None:intergenic 30.0%
AGAAATGTACTAACCAATTG+TGG - chr4_4:72645973-72645992 None:intergenic 30.0%
! TCCCAAAATAATTTGTATGC+TGG - chr4_4:72646181-72646200 None:intergenic 30.0%
! AAATATGGGCTATTTGTTCT+AGG + chr4_4:72646208-72646227 Msa0701250:CDS 30.0%
AAAATCTGCATGAAAGGAAA+AGG - chr4_4:72646349-72646368 None:intergenic 30.0%
GTTCCAGTAATTACATTAGT+TGG + chr4_4:72646386-72646405 Msa0701250:CDS 30.0%
ACTACAAACAAGATTAGCAT+GGG - chr4_4:72646577-72646596 None:intergenic 30.0%
TCAGGTATATGTCAAATAAC+TGG + chr4_4:72646603-72646622 Msa0701250:intron 30.0%
TATATGTCAAATAACTGGAC+TGG + chr4_4:72646608-72646627 Msa0701250:intron 30.0%
!! TTAAATTAGCTTGTGGAATG+TGG + chr4_4:72646647-72646666 Msa0701250:intron 30.0%
GTAACAAATTGAACAGAAAG+AGG - chr4_4:72646779-72646798 None:intergenic 30.0%
!! TCAATTTGTTACACCTGAAT+AGG + chr4_4:72646787-72646806 Msa0701250:intron 30.0%
TCATTCATTCAAACCTATTC+AGG - chr4_4:72646803-72646822 None:intergenic 30.0%
ATGTAACTCAACATAGTTGT+AGG + chr4_4:72646980-72646999 Msa0701250:CDS 30.0%
!!! TGTTTTAGTCTCATTAGTTG+AGG + chr4_4:72647213-72647232 Msa0701250:CDS 30.0%
!!! GTTTTCATTTTTTATGGGAC+AGG + chr4_4:72647531-72647550 Msa0701250:intron 30.0%
CAGTATATAGCAGCAAAAAT+AGG - chr4_4:72647819-72647838 None:intergenic 30.0%
!! GCTATATACTGTGTTTTGTT+TGG + chr4_4:72647828-72647847 Msa0701250:CDS 30.0%
GATGCTGAAGTAAATTCAAA+GGG - chr4_4:72647879-72647898 None:intergenic 30.0%
AGATGCTGAAGTAAATTCAA+AGG - chr4_4:72647880-72647899 None:intergenic 30.0%
! GATAATTGTTTGGTCTTCTT+TGG + chr4_4:72647903-72647922 Msa0701250:intron 30.0%
AATAGACAAGCCTAAGAAAA+GGG - chr4_4:72648030-72648049 None:intergenic 30.0%
!! GTGTATTCTCTGAAATATTC+AGG - chr4_4:72648053-72648072 None:intergenic 30.0%
ATTTCAGAGAATACACTATC+AGG + chr4_4:72648057-72648076 Msa0701250:CDS 30.0%
TTTCAGAGAATACACTATCA+GGG + chr4_4:72648058-72648077 Msa0701250:CDS 30.0%
TCATTGAACTGCAAAATCAA+AGG - chr4_4:72648346-72648365 None:intergenic 30.0%
AAGAATAGAAGATGGTATTC+AGG - chr4_4:72648372-72648391 None:intergenic 30.0%
ATTGATTATTGCTGTGTTCT+TGG + chr4_4:72648405-72648424 Msa0701250:CDS 30.0%
! GTAAGAATTTTCTATGATGG+AGG - chr4_4:72648562-72648581 None:intergenic 30.0%
AAAGGTTCGATATATGTTCA+TGG + chr4_4:72648798-72648817 Msa0701250:three_prime_UTR 30.0%
AAACTAAGTGTCACAGTAGT+GGG + chr4_4:72644407-72644426 Msa0701250:five_prime_UTR 35.0%
CAACATTTCTTCAAGCTAGT+AGG + chr4_4:72644487-72644506 Msa0701250:five_prime_UTR 35.0%
TTCTTCAAGCTAGTAGGATT+TGG + chr4_4:72644493-72644512 Msa0701250:five_prime_UTR 35.0%
ATCATAAGTAGCAAAGTTGG+AGG + chr4_4:72644530-72644549 Msa0701250:five_prime_UTR 35.0%
AGAGATAAGTCATTCACCAA+TGG + chr4_4:72644578-72644597 Msa0701250:CDS 35.0%
CTCTATGCAAATCTCTACTT+AGG + chr4_4:72644937-72644956 Msa0701250:intron 35.0%
TTCAGTTCAACTGGTTGAAT+TGG + chr4_4:72645036-72645055 Msa0701250:intron 35.0%
CAACTGGTTGAATTGGAAAT+TGG + chr4_4:72645043-72645062 Msa0701250:intron 35.0%
ACTGGTTGAATTGGAAATTG+GGG + chr4_4:72645045-72645064 Msa0701250:intron 35.0%
GAAATTGGGGTATGTTTAAC+AGG + chr4_4:72645058-72645077 Msa0701250:intron 35.0%
!! GTCTATTGGTTTAATCATGG+TGG + chr4_4:72645104-72645123 Msa0701250:intron 35.0%
TTGTCACATGCTAAATGAAG+TGG + chr4_4:72645679-72645698 Msa0701250:intron 35.0%
TGTTGCAGGATGATAAAGTA+AGG + chr4_4:72645794-72645813 Msa0701250:intron 35.0%
GTTGCAGGATGATAAAGTAA+GGG + chr4_4:72645795-72645814 Msa0701250:intron 35.0%
! ACACTTTTGCAAACACTGTT+TGG + chr4_4:72645853-72645872 Msa0701250:CDS 35.0%
!! CACGAATAATGGATACAATG+GGG - chr4_4:72645924-72645943 None:intergenic 35.0%
!! GTCACGAATAATGGATACAA+TGG - chr4_4:72645926-72645945 None:intergenic 35.0%
AAAAGAAGGGTCACGAATAA+TGG - chr4_4:72645935-72645954 None:intergenic 35.0%
AATGATAGATGACCCACAAT+TGG + chr4_4:72645957-72645976 Msa0701250:CDS 35.0%
!!! GGTTTTGGATTATTTGACAG+AGG + chr4_4:72646407-72646426 Msa0701250:CDS 35.0%
CAGTGTTGTACTATACCATA+GGG - chr4_4:72646436-72646455 None:intergenic 35.0%
TCAGTGTTGTACTATACCAT+AGG - chr4_4:72646437-72646456 None:intergenic 35.0%
CACTACAAACAAGATTAGCA+TGG - chr4_4:72646578-72646597 None:intergenic 35.0%
AGAGCAAATCTCTCTAGTAT+CGG - chr4_4:72646886-72646905 None:intergenic 35.0%
TCATAACAACCACAGTGATA+TGG + chr4_4:72646908-72646927 Msa0701250:CDS 35.0%
CATAACAACCACAGTGATAT+GGG + chr4_4:72646909-72646928 Msa0701250:CDS 35.0%
CAACTATGTTGAGTTACATC+CGG - chr4_4:72646979-72646998 None:intergenic 35.0%
! GGAATTGGAATTTTGCTGAA+TGG + chr4_4:72647439-72647458 Msa0701250:CDS 35.0%
! ATTTTGCTGAATGGCCTTTT+CGG + chr4_4:72647448-72647467 Msa0701250:CDS 35.0%
CAGAAACTTGAATAACCCTT+CGG - chr4_4:72647622-72647641 None:intergenic 35.0%
TTAGGTGAGTGGCAAATTAT+AGG + chr4_4:72647668-72647687 Msa0701250:intron 35.0%
TAGGTGAGTGGCAAATTATA+GGG + chr4_4:72647669-72647688 Msa0701250:intron 35.0%
ATAGCAGCAAAAATAGGGAA+TGG - chr4_4:72647813-72647832 None:intergenic 35.0%
!!! TGTGTTTTGTTTGGTCTTGT+AGG + chr4_4:72647837-72647856 Msa0701250:CDS 35.0%
TCACCAACATGAATTCAATG+AGG + chr4_4:72647982-72648001 Msa0701250:CDS 35.0%
GTTCCTCATTGAATTCATGT+TGG - chr4_4:72647988-72648007 None:intergenic 35.0%
GAATAGACAAGCCTAAGAAA+AGG - chr4_4:72648031-72648050 None:intergenic 35.0%
!! AGTTGGTGAAGAATAGAAGA+TGG - chr4_4:72648380-72648399 None:intergenic 35.0%
GCAATAATCAATGCAACAGT+TGG - chr4_4:72648397-72648416 None:intergenic 35.0%
GGACAATACTCTTGACTATA+AGG + chr4_4:72648426-72648445 Msa0701250:CDS 35.0%
AAGAGACATGTTAGAGTTAG+AGG + chr4_4:72648584-72648603 Msa0701250:three_prime_UTR 35.0%
AATTGGGTGGACAATGAATT+TGG - chr4_4:72648768-72648787 None:intergenic 35.0%
GAAACTAAGTGTCACAGTAG+TGG + chr4_4:72644406-72644425 Msa0701250:five_prime_UTR 40.0%
TTGTGTTCAGAGAGATTAGC+GGG - chr4_4:72644470-72644489 None:intergenic 40.0%
GTTGTGTTCAGAGAGATTAG+CGG - chr4_4:72644471-72644490 None:intergenic 40.0%
TCAAGCTAGTAGGATTTGGA+AGG + chr4_4:72644497-72644516 Msa0701250:five_prime_UTR 40.0%
AGCAAAGTTGGAGGTGATTA+TGG + chr4_4:72644539-72644558 Msa0701250:exon 40.0%
GGTGAATGACTTATCTCTTC+TGG - chr4_4:72644576-72644595 None:intergenic 40.0%
TTCACCAATGGATCAACTTC+AGG + chr4_4:72644590-72644609 Msa0701250:CDS 40.0%
TCACCAATGGATCAACTTCA+GGG + chr4_4:72644591-72644610 Msa0701250:CDS 40.0%
! AAACCCTGAAGTTGATCCAT+TGG - chr4_4:72644597-72644616 None:intergenic 40.0%
ACAGTGGAGACAATACTTCT+TGG + chr4_4:72644744-72644763 Msa0701250:intron 40.0%
TTTCTTGTTCCTTCAATGGG+TGG + chr4_4:72644816-72644835 Msa0701250:CDS 40.0%
ACATCATTTCCACCCATTGA+AGG - chr4_4:72644828-72644847 None:intergenic 40.0%
TCACATGCTAAATGAAGTGG+TGG + chr4_4:72645682-72645701 Msa0701250:intron 40.0%
CACATGCTAAATGAAGTGGT+GGG + chr4_4:72645683-72645702 Msa0701250:intron 40.0%
TCTCCCAAAAGAGGAAAATC+TGG + chr4_4:72645706-72645725 Msa0701250:intron 40.0%
! CCACCAGATTTTCCTCTTTT+GGG - chr4_4:72645712-72645731 None:intergenic 40.0%
! TCCACCAGATTTTCCTCTTT+TGG - chr4_4:72645713-72645732 None:intergenic 40.0%
CCTCTATCTTGGTAAGTTTG+AGG - chr4_4:72645751-72645770 None:intergenic 40.0%
CCTCAAACTTACCAAGATAG+AGG + chr4_4:72645748-72645767 Msa0701250:intron 40.0%
TATGATCCTCCTATCACTGT+TGG - chr4_4:72645889-72645908 None:intergenic 40.0%
AGGAGGATCATATGCATTCA+TGG + chr4_4:72645897-72645916 Msa0701250:CDS 40.0%
GAGATACACAAACATGGAAG+AGG - chr4_4:72646106-72646125 None:intergenic 40.0%
TCATTGTGCTAAGAAACCTC+TGG - chr4_4:72646128-72646147 None:intergenic 40.0%
ATGCTACAATTAGTGCACCT+TGG - chr4_4:72646158-72646177 None:intergenic 40.0%
GGCTGAAAAATCTGCATGAA+AGG - chr4_4:72646355-72646374 None:intergenic 40.0%
!! ATTTTTCAGCCCACTTGGAA+TGG + chr4_4:72646364-72646383 Msa0701250:CDS 40.0%
TTACTGGAACCATTCCAAGT+GGG - chr4_4:72646376-72646395 None:intergenic 40.0%
ATTACTGGAACCATTCCAAG+TGG - chr4_4:72646377-72646396 None:intergenic 40.0%
ATTTGACAGAGGTTTCCCTA+TGG + chr4_4:72646418-72646437 Msa0701250:CDS 40.0%
GAATACAAGTACAAGTCACG+TGG - chr4_4:72646462-72646481 None:intergenic 40.0%
CTTGTTTGTAGTGTTCTCTC+AGG + chr4_4:72646585-72646604 Msa0701250:CDS 40.0%
AAAGCCTAGAGCAAGAAAGA+AGG + chr4_4:72646728-72646747 Msa0701250:intron 40.0%
AACATAGTTGTAGGACAGAC+AGG + chr4_4:72646989-72647008 Msa0701250:CDS 40.0%
ACATAGTTGTAGGACAGACA+GGG + chr4_4:72646990-72647009 Msa0701250:CDS 40.0%
TTCGACAACAACGATGCTAT+TGG - chr4_4:72647048-72647067 None:intergenic 40.0%
!! CATTGACTCTTGACACATGT+TGG + chr4_4:72647110-72647129 Msa0701250:intron 40.0%
TGTGTGTTACGTAAGCATAC+CGG - chr4_4:72647281-72647300 None:intergenic 40.0%
GTACACAGAAACTGTTGAAC+CGG - chr4_4:72647482-72647501 None:intergenic 40.0%
CATCTTGACAGAGAGAATGT+AGG + chr4_4:72647569-72647588 Msa0701250:intron 40.0%
! AGGGTTATTCAAGTTTCTGC+TGG + chr4_4:72647623-72647642 Msa0701250:CDS 40.0%
TCTTTGCAATGTTAGGTGAG+TGG + chr4_4:72647657-72647676 Msa0701250:intron 40.0%
ATGAGGAACCTCTTTATCAC+TGG + chr4_4:72647999-72648018 Msa0701250:CDS 40.0%
ATCATATCTCATCTCGTCTC+AGG + chr4_4:72648149-72648168 Msa0701250:intron 40.0%
TCATATCTCATCTCGTCTCA+GGG + chr4_4:72648150-72648169 Msa0701250:intron 40.0%
AAGAAGCGGTTGAGATTGAA+AGG - chr4_4:72648538-72648557 None:intergenic 40.0%
! TCTATGATGGAGGAAAGAAG+CGG - chr4_4:72648552-72648571 None:intergenic 40.0%
ACCTTTCCAATGCAGCAATT+GGG - chr4_4:72648784-72648803 None:intergenic 40.0%
AACCTTTCCAATGCAGCAAT+TGG - chr4_4:72648785-72648804 None:intergenic 40.0%
! TAAGTGTCACAGTAGTGGGA+AGG + chr4_4:72644411-72644430 Msa0701250:five_prime_UTR 45.0%
TGTGTTCAGAGAGATTAGCG+GGG - chr4_4:72644469-72644488 None:intergenic 45.0%
CATGCAAACATACCCCAAGA+TGG - chr4_4:72644642-72644661 None:intergenic 45.0%
ACCAGTCAGTTCAGTTCAAC+TGG + chr4_4:72645027-72645046 Msa0701250:intron 45.0%
ACCAGTTGAACTGAACTGAC+TGG - chr4_4:72645031-72645050 None:intergenic 45.0%
CCCAAAAGAGGAAAATCTGG+TGG + chr4_4:72645709-72645728 Msa0701250:intron 45.0%
GCAGGATGATAAAGTAAGGG+TGG + chr4_4:72645798-72645817 Msa0701250:intron 45.0%
! TGCAAACACTGTTTGGAACC+CGG + chr4_4:72645860-72645879 Msa0701250:CDS 45.0%
!! TCCTATCACTGTTGGTAACC+GGG - chr4_4:72645881-72645900 None:intergenic 45.0%
!! CTCCTATCACTGTTGGTAAC+CGG - chr4_4:72645882-72645901 None:intergenic 45.0%
! CCTCTGGAGATACACAAACA+TGG - chr4_4:72646112-72646131 None:intergenic 45.0%
CCATGTTTGTGTATCTCCAG+AGG + chr4_4:72646109-72646128 Msa0701250:intron 45.0%
!! TGCAGATTTTTCAGCCCACT+TGG + chr4_4:72646359-72646378 Msa0701250:intron 45.0%
ATGCTGTTCTGTCCTTTCTC+AGG + chr4_4:72646525-72646544 Msa0701250:intron 45.0%
TGTTCTGTCCTTTCTCAGGT+GGG + chr4_4:72646529-72646548 Msa0701250:intron 45.0%
GTGGGGACTTGTGTTGAAAT+TGG + chr4_4:72646547-72646566 Msa0701250:CDS 45.0%
TCCTCCTTCTTTCTTGCTCT+AGG - chr4_4:72646735-72646754 None:intergenic 45.0%
TGCATATGCCCATATCACTG+TGG - chr4_4:72646920-72646939 None:intergenic 45.0%
TATGTTGAGTTACATCCGGC+CGG - chr4_4:72646975-72646994 None:intergenic 45.0%
ATCTCATTTCTTCCGCTCCT+TGG + chr4_4:72647016-72647035 Msa0701250:CDS 45.0%
TATTGGTACCAACCAAGGAG+CGG - chr4_4:72647031-72647050 None:intergenic 45.0%
GATGCTATTGGTACCAACCA+AGG - chr4_4:72647036-72647055 None:intergenic 45.0%
AGATTCCATACCCTCTTGAG+TGG + chr4_4:72647143-72647162 Msa0701250:CDS 45.0%
GATTCCATACCCTCTTGAGT+GGG + chr4_4:72647144-72647163 Msa0701250:CDS 45.0%
ATTCCATACCCTCTTGAGTG+GGG + chr4_4:72647145-72647164 Msa0701250:CDS 45.0%
! TTTGATGCTGGCCACTCTTT+TGG + chr4_4:72647178-72647197 Msa0701250:CDS 45.0%
!!! TGGCCACTCTTTTGGAATGA+TGG + chr4_4:72647186-72647205 Msa0701250:CDS 45.0%
CAGCCATCATTCCAAAAGAG+TGG - chr4_4:72647192-72647211 None:intergenic 45.0%
AACCGGTTAGTGTTCCGAAA+AGG - chr4_4:72647465-72647484 None:intergenic 45.0%
AGAGAGAATGTAGGACTCCT+AGG + chr4_4:72647578-72647597 Msa0701250:intron 45.0%
!!! ACTGGTGTTGCCCTTTTCTT+AGG + chr4_4:72648017-72648036 Msa0701250:CDS 45.0%
TACACTATCAGGGCCTTTCA+TGG + chr4_4:72648068-72648087 Msa0701250:CDS 45.0%
TGCTCATACCAAAGCTGGAT+GGG + chr4_4:72648094-72648113 Msa0701250:CDS 45.0%
CATATCTCATCTCGTCTCAG+GGG + chr4_4:72648151-72648170 Msa0701250:intron 45.0%
AAGGACAGTGCCAAAGATAG+AGG + chr4_4:72648445-72648464 Msa0701250:CDS 45.0%
CCATGGCATTCCTCTATCTT+TGG - chr4_4:72648458-72648477 None:intergenic 45.0%
CCAAAGATAGAGGAATGCCA+TGG + chr4_4:72648455-72648474 Msa0701250:CDS 45.0%
AAGATAGAGGAATGCCATGG+TGG + chr4_4:72648458-72648477 Msa0701250:CDS 45.0%
AGATAGAGGAATGCCATGGT+GGG + chr4_4:72648459-72648478 Msa0701250:CDS 45.0%
! GTTCTAAACTTAGCCCACCA+TGG - chr4_4:72648475-72648494 None:intergenic 45.0%
TTTCCAATGCAGCAATTGGG+TGG - chr4_4:72648781-72648800 None:intergenic 45.0%
ACCCAATTGCTGCATTGGAA+AGG + chr4_4:72648780-72648799 Msa0701250:three_prime_UTR 45.0%
!! ACTGACTGGTTCGACTCGTT+CGG - chr4_4:72645017-72645036 None:intergenic 50.0%
ACCCGGTTACCAACAGTGAT+AGG + chr4_4:72645877-72645896 Msa0701250:CDS 50.0%
CGGTTACCAACAGTGATAGG+AGG + chr4_4:72645880-72645899 Msa0701250:CDS 50.0%
AGCACAATGAGAGCAGTCCA+AGG + chr4_4:72646138-72646157 Msa0701250:CDS 50.0%
CTGTTCTGTCCTTTCTCAGG+TGG + chr4_4:72646528-72646547 Msa0701250:intron 50.0%
GTTCTGTCCTTTCTCAGGTG+GGG + chr4_4:72646530-72646549 Msa0701250:intron 50.0%
GCCTAGAGCAAGAAAGAAGG+AGG + chr4_4:72646731-72646750 Msa0701250:intron 50.0%
GCACATCTATTGACAGCGAG+TGG + chr4_4:72646937-72646956 Msa0701250:CDS 50.0%
CGAGTGGAGCATACAAACAC+CGG + chr4_4:72646953-72646972 Msa0701250:CDS 50.0%
CATTTCTTCCGCTCCTTGGT+TGG + chr4_4:72647020-72647039 Msa0701250:intron 50.0%
CTCTTGACACATGTTGGTGC+AGG + chr4_4:72647116-72647135 Msa0701250:intron 50.0%
GGTGCTCCTACATTTGATGC+TGG + chr4_4:72647166-72647185 Msa0701250:CDS 50.0%
GAGTGGCCAGCATCAAATGT+AGG - chr4_4:72647175-72647194 None:intergenic 50.0%
! GGCCTTTTCGGAACACTAAC+CGG + chr4_4:72647460-72647479 Msa0701250:CDS 50.0%
GGGCAACACCAGTGATAAAG+AGG - chr4_4:72648010-72648029 None:intergenic 50.0%
GGTATGAGCAGGACCATGAA+AGG - chr4_4:72648084-72648103 None:intergenic 50.0%
! CATCCAGCTTTGGTATGAGC+AGG - chr4_4:72648095-72648114 None:intergenic 50.0%
CTGCTCATACCAAAGCTGGA+TGG + chr4_4:72648093-72648112 Msa0701250:CDS 50.0%
GAAACTCACCCATCCAGCTT+TGG - chr4_4:72648105-72648124 None:intergenic 50.0%
TGTCCACCCAATTGCTGCAT+TGG + chr4_4:72648775-72648794 Msa0701250:three_prime_UTR 50.0%
!! AGTGGTGGGTCTCCCAAAAG+AGG + chr4_4:72645697-72645716 Msa0701250:intron 55.0%
CACAAGTCCCCACCTGAGAA+AGG - chr4_4:72646540-72646559 None:intergenic 55.0%
TGGAGCATACAAACACCGGC+CGG + chr4_4:72646957-72646976 Msa0701250:CDS 55.0%
!! TAGGAGCACCCCACTCAAGA+GGG - chr4_4:72647156-72647175 None:intergenic 55.0%
CATGTCCTGAGCCGTGGTAT+CGG + chr4_4:72647409-72647428 Msa0701250:CDS 55.0%
TTCCCTGCCAACCGATACCA+CGG - chr4_4:72647423-72647442 None:intergenic 55.0%
!! GGTATCGGTTGGCAGGGAAT+TGG + chr4_4:72647424-72647443 Msa0701250:CDS 55.0%
CTCCTAGGAAGCAACCGTGT+TGG + chr4_4:72647593-72647612 Msa0701250:CDS 55.0%
TGCCAACACGGTTGCTTCCT+AGG - chr4_4:72647598-72647617 None:intergenic 55.0%
TAACCCTTCGGCTGCCAACA+CGG - chr4_4:72647610-72647629 None:intergenic 55.0%
GGTCCTGCTCATACCAAAGC+TGG + chr4_4:72648089-72648108 Msa0701250:CDS 55.0%
GCACCCCACTCAAGAGGGTA+TGG - chr4_4:72647151-72647170 None:intergenic 60.0%
!! GTAGGAGCACCCCACTCAAG+AGG - chr4_4:72647157-72647176 None:intergenic 60.0%
!! TCCTGAGCCGTGGTATCGGT+TGG + chr4_4:72647413-72647432 Msa0701250:CDS 60.0%
!! AGCCGTGGTATCGGTTGGCA+GGG + chr4_4:72647418-72647437 Msa0701250:CDS 60.0%
! CAACCGTGTTGGCAGCCGAA+GGG + chr4_4:72647604-72647623 Msa0701250:CDS 60.0%
GACATGAGCAGGCGGTGGTG+TGG - chr4_4:72647395-72647414 None:intergenic 65.0%
CTCAGGACATGAGCAGGCGG+TGG - chr4_4:72647400-72647419 None:intergenic 65.0%
CGGCTCAGGACATGAGCAGG+CGG - chr4_4:72647403-72647422 None:intergenic 65.0%
CCACGGCTCAGGACATGAGC+AGG - chr4_4:72647406-72647425 None:intergenic 65.0%
CCTGCTCATGTCCTGAGCCG+TGG + chr4_4:72647403-72647422 Msa0701250:CDS 65.0%
GCCAACCGATACCACGGCTC+AGG - chr4_4:72647417-72647436 None:intergenic 65.0%
!! GAGCCGTGGTATCGGTTGGC+AGG + chr4_4:72647417-72647436 Msa0701250:CDS 65.0%
! GCAACCGTGTTGGCAGCCGA+AGG + chr4_4:72647603-72647622 Msa0701250:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 72644353 72648853 72644353 ID=Msa0701250;Name=Msa0701250
chr4_4 mRNA 72644353 72648853 72644353 ID=Msa0701250-mRNA-1;Parent=Msa0701250;Name=Msa0701250-mRNA-1;_AED=0.18;_eAED=0.18;_QI=205|1|1|1|1|1|13|283|524
chr4_4 exon 72644353 72644648 72644353 ID=Msa0701250-mRNA-1:exon:22200;Parent=Msa0701250-mRNA-1
chr4_4 exon 72644748 72644845 72644748 ID=Msa0701250-mRNA-1:exon:22201;Parent=Msa0701250-mRNA-1
chr4_4 exon 72645802 72645978 72645802 ID=Msa0701250-mRNA-1:exon:22202;Parent=Msa0701250-mRNA-1
chr4_4 exon 72646129 72646229 72646129 ID=Msa0701250-mRNA-1:exon:22203;Parent=Msa0701250-mRNA-1
chr4_4 exon 72646364 72646439 72646364 ID=Msa0701250-mRNA-1:exon:22204;Parent=Msa0701250-mRNA-1
chr4_4 exon 72646547 72646606 72646547 ID=Msa0701250-mRNA-1:exon:22205;Parent=Msa0701250-mRNA-1
chr4_4 exon 72646853 72647037 72646853 ID=Msa0701250-mRNA-1:exon:22206;Parent=Msa0701250-mRNA-1
chr4_4 exon 72647138 72647234 72647138 ID=Msa0701250-mRNA-1:exon:22207;Parent=Msa0701250-mRNA-1
chr4_4 exon 72647352 72647497 72647352 ID=Msa0701250-mRNA-1:exon:22208;Parent=Msa0701250-mRNA-1
chr4_4 exon 72647580 72647671 72647580 ID=Msa0701250-mRNA-1:exon:22209;Parent=Msa0701250-mRNA-1
chr4_4 exon 72647781 72647858 72647781 ID=Msa0701250-mRNA-1:exon:22210;Parent=Msa0701250-mRNA-1
chr4_4 exon 72647955 72648115 72647955 ID=Msa0701250-mRNA-1:exon:22211;Parent=Msa0701250-mRNA-1
chr4_4 exon 72648358 72648853 72648358 ID=Msa0701250-mRNA-1:exon:22212;Parent=Msa0701250-mRNA-1
chr4_4 five_prime_UTR 72644353 72644557 72644353 ID=Msa0701250-mRNA-1:five_prime_utr;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72644558 72644648 72644558 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72644748 72644845 72644748 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72645802 72645978 72645802 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72646129 72646229 72646129 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72646364 72646439 72646364 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72646547 72646606 72646547 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72646853 72647037 72646853 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72647138 72647234 72647138 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72647352 72647497 72647352 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72647580 72647671 72647580 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72647781 72647858 72647781 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72647955 72648115 72647955 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 CDS 72648358 72648570 72648358 ID=Msa0701250-mRNA-1:cds;Parent=Msa0701250-mRNA-1
chr4_4 three_prime_UTR 72648571 72648853 72648571 ID=Msa0701250-mRNA-1:three_prime_utr;Parent=Msa0701250-mRNA-1
Gene Sequence

>Msa0701250

ATGGCAGCTATAAAGCCAGAAGAGATAAGTCATTCACCAATGGATCAACTTCAGGGTTTAGAGTATTGTATAGATTCAAATCCATCTTGGGTGGAGACAATACTTCTTGGTTTTCAACATTATATTTTGGCATTAGGAACTGCAGTTATGATTCCTTCATTTCTTGTTCCTTCAATGGGTGGAAATGATGATGATAAAGTAAGGGTGGTACAAACTCTACTTTTTGTTGAAGGAATTAATACACTTTTGCAAACACTGTTTGGAACCCGGTTACCAACAGTGATAGGAGGATCATATGCATTCATGGTCCCCATTGTATCCATTATTCGTGACCCTTCTTTTGCAATGATAGATGACCCACAATTGAGGTTTCTTAGCACAATGAGAGCAGTCCAAGGTGCACTAATTGTAGCATCCAGCATACAAATTATTTTGGGATTTAGTCAAATATGGGCTATTTGTTCTAGATTTTTCAGCCCACTTGGAATGGTTCCAGTAATTACATTAGTTGGTTTTGGATTATTTGACAGAGGTTTCCCTATGGTGGGGACTTGTGTTGAAATTGGAATTCCCATGCTAATCTTGTTTGTAGTGTTCTCTCAGTACTTGAAAAATTTTCAGACAAGACAAGTACCGATACTAGAGAGATTTGCTCTACTCATAACAACCACAGTGATATGGGCATATGCACATCTATTGACAGCGAGTGGAGCATACAAACACCGGCCGGATGTAACTCAACATAGTTGTAGGACAGACAGGGCTAATCTCATTTCTTCCGCTCCTTGGATAAAGATTCCATACCCTCTTGAGTGGGGTGCTCCTACATTTGATGCTGGCCACTCTTTTGGAATGATGGCTGCTGTTTTAGTCTCATTAGTTGAGTCAACTGGAGCATTCAAAGCTGCATCGCGTCTAGCAAGTGCCACACCACCGCCTGCTCATGTCCTGAGCCGTGGTATCGGTTGGCAGGGAATTGGAATTTTGCTGAATGGCCTTTTCGGAACACTAACCGGTTCAACAGTTTCTGTAGAGAATGTAGGACTCCTAGGAAGCAACCGTGTTGGCAGCCGAAGGGTTATTCAAGTTTCTGCTGGATTTATGATATTCTTTGCAATGTTAGGTAAATTTGGAGCTTTATTTGCATCAATACCATTCCCTATTTTTGCTGCTATATACTGTGTTTTGTTTGGTCTTGTAGCTTCTGTAGGGCTATCATTTTTGCAATTCACCAACATGAATTCAATGAGGAACCTCTTTATCACTGGTGTTGCCCTTTTCTTAGGCTTGTCTATTCCTGAATATTTCAGAGAATACACTATCAGGGCCTTTCATGGTCCTGCTCATACCAAAGCTGGATGGTTCAATGACTTCCTGAATACCATCTTCTATTCTTCACCAACTGTTGCATTGATTATTGCTGTGTTCTTGGACAATACTCTTGACTATAAGGACAGTGCCAAAGATAGAGGAATGCCATGGTGGGCTAAGTTTAGAACATTTAAAGCAGATAGCAGAAATGAAGAGTTCTACTCTCTTCCTTTCAATCTCAACCGCTTCTTTCCTCCATCATAG

Protein sequence

>Msa0701250

MAAIKPEEISHSPMDQLQGLEYCIDSNPSWVETILLGFQHYILALGTAVMIPSFLVPSMGGNDDDKVRVVQTLLFVEGINTLLQTLFGTRLPTVIGGSYAFMVPIVSIIRDPSFAMIDDPQLRFLSTMRAVQGALIVASSIQIILGFSQIWAICSRFFSPLGMVPVITLVGFGLFDRGFPMVGTCVEIGIPMLILFVVFSQYLKNFQTRQVPILERFALLITTTVIWAYAHLLTASGAYKHRPDVTQHSCRTDRANLISSAPWIKIPYPLEWGAPTFDAGHSFGMMAAVLVSLVESTGAFKAASRLASATPPPAHVLSRGIGWQGIGILLNGLFGTLTGSTVSVENVGLLGSNRVGSRRVIQVSAGFMIFFAMLGKFGALFASIPFPIFAAIYCVLFGLVASVGLSFLQFTNMNSMRNLFITGVALFLGLSIPEYFREYTIRAFHGPAHTKAGWFNDFLNTIFYSSPTVALIIAVFLDNTLDYKDSAKDRGMPWWAKFRTFKADSRNEEFYSLPFNLNRFFPPS*