AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0541740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0541740 MtrunA17_Chr8g0379171 99.427 524 3 0 1 524 1 524 0.0 1059
Msa0541740 MtrunA17_Chr2g0284061 83.397 524 87 0 1 524 1 524 0.0 916
Msa0541740 MtrunA17_Chr3g0119521 72.587 518 141 1 8 524 3 520 0.0 793
Msa0541740 MtrunA17_Chr8g0364611 59.846 518 206 1 7 522 14 531 0.0 645
Msa0541740 MtrunA17_Chr3g0117941 59.653 518 207 1 7 522 13 530 0.0 633
Msa0541740 MtrunA17_Chr4g0059331 59.266 518 209 1 7 522 13 530 0.0 629
Msa0541740 MtrunA17_Chr1g0154001 57.534 511 217 0 12 522 35 545 0.0 607
Msa0541740 MtrunA17_Chr5g0414131 56.298 524 221 4 5 522 15 536 0.0 597
Msa0541740 MtrunA17_Chr1g0207021 54.356 528 232 4 1 522 1 525 0.0 572
Msa0541740 MtrunA17_Chr3g0134911 48.998 549 240 5 9 522 40 583 0.0 550
Msa0541740 MtrunA17_Chr5g0405471 51.206 539 238 6 5 522 26 560 0.0 544
Msa0541740 MtrunA17_Chr8g0367361 35.727 543 309 6 11 521 234 768 3.49e-112 350
Msa0541740 MtrunA17_Chr2g0320981 36.381 536 303 5 20 521 147 678 6.53e-111 344
Msa0541740 MtrunA17_Chr5g0412181 37.170 530 297 5 20 517 168 693 1.26e-109 342
Msa0541740 MtrunA17_Chr4g0027121 35.261 536 310 5 20 521 154 686 1.74e-104 328
Msa0541740 MtrunA17_Chr2g0332871 33.598 503 288 6 40 521 166 643 4.23e-96 305
Msa0541740 MtrunA17_Chr8g0379181 88.889 54 6 0 401 454 9 62 3.23e-26 101
Msa0541740 MtrunA17_Chr5g0418111 64.286 56 20 0 455 510 39 94 7.64e-19 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0541740 AT2G34190.1 83.588 524 86 0 1 524 1 524 0.0 926
Msa0541740 AT2G05760.1 70.077 518 154 1 8 524 3 520 0.0 764
Msa0541740 AT5G62890.1 59.266 518 209 1 7 522 13 530 0.0 628
Msa0541740 AT5G62890.2 59.266 518 209 1 7 522 13 530 0.0 628
Msa0541740 AT5G62890.3 59.266 518 209 1 7 522 13 530 0.0 628
Msa0541740 AT1G60030.1 57.198 514 218 1 11 522 23 536 0.0 621
Msa0541740 AT2G26510.1 57.553 523 221 1 1 522 25 547 0.0 612
Msa0541740 AT1G10540.1 54.771 524 231 4 5 522 14 537 0.0 590
Msa0541740 AT5G49990.2 56.371 518 224 1 7 522 9 526 0.0 586
Msa0541740 AT5G49990.3 56.371 518 224 1 7 522 9 526 0.0 586
Msa0541740 AT5G49990.1 56.371 518 224 1 7 522 9 526 0.0 586
Msa0541740 AT5G49990.4 56.371 518 224 1 7 522 9 526 0.0 586
Msa0541740 AT1G49960.1 55.832 523 228 2 3 522 2 524 0.0 577
Msa0541740 AT1G65550.1 50.758 528 248 5 5 522 14 539 0.0 552
Msa0541740 AT5G62890.4 58.482 448 186 0 7 454 13 460 0.0 535
Msa0541740 AT2G26510.3 57.867 375 158 0 1 375 25 399 1.11e-147 430
Msa0541740 AT1G10540.2 55.200 375 164 3 5 375 14 388 3.07e-144 421
Msa0541740 AT2G26510.2 57.735 362 153 0 1 362 25 386 6.75e-142 416
Msa0541740 AT5G25420.1 42.986 442 171 5 5 439 26 393 6.88e-123 367
Msa0541740 AT2G27810.1 35.261 536 310 6 20 521 169 701 1.36e-102 324
Msa0541740 AT4G38050.1 35.581 534 308 5 20 521 175 704 3.08e-99 315
Msa0541740 AT2G27810.4 33.750 560 310 7 20 521 169 725 2.90e-97 310
Msa0541740 AT2G27810.2 36.256 422 250 4 20 423 169 589 2.39e-82 268
Msa0541740 AT2G27810.3 36.533 375 219 4 20 376 169 542 9.03e-71 236

Find 150 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAGCATACAAATTATTT+TGG 0.101959 4_1:+25778632 Msa0541740:CDS
TAATTTGTTTCAGGTAAATT+TGG 0.196029 4_1:+25780224 Msa0541740:intron
TTCATTTCTTGTTCCTTCAA+TGG 0.226954 4_1:+25777267 Msa0541740:CDS
TTTGATGCTGGCCACTCTTT+TGG 0.230201 4_1:+25779634 Msa0541740:CDS
GTAATTACATTAGTTGGTTT+TGG 0.246380 4_1:+25778848 Msa0541740:CDS
GGTGAATGACTTATCTCTTC+TGG 0.248677 4_1:-25777028 None:intergenic
AATTGGGTGGACAATGAATT+TGG 0.256401 4_1:-25781221 None:intergenic
TCATAACAACCACAGTGATA+TGG 0.275276 4_1:+25779364 Msa0541740:CDS
ATTGATTATTGCTGTGTTCT+TGG 0.284940 4_1:+25780861 Msa0541740:CDS
ATTTCAGAGAATACACTATC+AGG 0.289187 4_1:+25780513 Msa0541740:CDS
CCATGGCATTCCTCTATCTT+TGG 0.292772 4_1:-25780911 None:intergenic
TTCTTCAAGCTAGTAGGATT+TGG 0.295874 4_1:+25776948 Msa0541740:five_prime_UTR
TTCACCAATGGATCAACTTC+AGG 0.304968 4_1:+25777045 Msa0541740:CDS
GGACAATACTCTTGACTATA+AGG 0.306775 4_1:+25780882 Msa0541740:CDS
AGCAAAGTTGGAGGTGATTA+TGG 0.308536 4_1:+25776994 Msa0541740:exon
AAACCAACTAATGTAATTAC+TGG 0.315074 4_1:-25778845 None:intergenic
AAGAATAGAAGATGGTATTC+AGG 0.318777 4_1:-25780825 None:intergenic
AACCTTTCCAATGCAGCAAT+TGG 0.318940 4_1:-25781238 None:intergenic
ATGATATTCTTTGCAATGTT+AGG 0.319292 4_1:+25780106 Msa0541740:CDS
CTCCTATCACTGTTGGTAAC+CGG 0.320169 4_1:-25778335 None:intergenic
AAGAGACATGTTAGAGTTAG+AGG 0.320505 4_1:+25781040 Msa0541740:three_prime_UTR
GTGGGGACTTGTGTTGAAAT+TGG 0.325063 4_1:+25779003 Msa0541740:CDS
AAATATGGGCTATTTGTTCT+AGG 0.325670 4_1:+25778664 Msa0541740:CDS
TCATTTCTTGTTCCTTCAAT+GGG 0.346165 4_1:+25777268 Msa0541740:CDS
GTGTATTCTCTGAAATATTC+AGG 0.350685 4_1:-25780506 None:intergenic
ATCTCATTTCTTCCGCTCCT+TGG 0.363626 4_1:+25779472 Msa0541740:CDS
TATAGATTCAAATCCATCTT+GGG 0.371990 4_1:+25777081 Msa0541740:CDS
CTTGTTTGTAGTGTTCTCTC+AGG 0.378594 4_1:+25779041 Msa0541740:CDS
AAAGGTTCGATATATGTTTA+CGG 0.384144 4_1:+25781254 Msa0541740:three_prime_UTR
AAAAGAAGGGTCACGAATAA+TGG 0.387784 4_1:-25778388 None:intergenic
ACAGTGGAGACAATACTTCT+TGG 0.392031 4_1:+25777199 Msa0541740:intron
TTTGGGATTTAGTCAAATAT+GGG 0.396617 4_1:+25778650 Msa0541740:CDS
GAGCCGTGGTATCGGTTGGC+AGG 0.401838 4_1:+25779873 Msa0541740:CDS
GTTCCAGTAATTACATTAGT+TGG 0.413657 4_1:+25778842 Msa0541740:CDS
TGCCAACACGGTTGCTTCCT+AGG 0.415342 4_1:-25780051 None:intergenic
TGTCCACCCAATTGCTGCAT+TGG 0.415729 4_1:+25781231 Msa0541740:three_prime_UTR
GGTATCGGTTGGCAGGGAAT+TGG 0.421613 4_1:+25779880 Msa0541740:CDS
AGGGTTATTCAAGTTTCTGC+TGG 0.424755 4_1:+25780079 Msa0541740:CDS
TACACTATCAGGGCCTTTCA+TGG 0.429220 4_1:+25780524 Msa0541740:CDS
TCCCAAAATAATTTGTATGC+TGG 0.431042 4_1:-25778634 None:intergenic
AGAGAGAATGTAGGACTCCT+AGG 0.436161 4_1:+25780034 Msa0541740:intron
CATAACAACCACAGTGATAT+GGG 0.441500 4_1:+25779365 Msa0541740:CDS
CAACATTTCTTCAAGCTAGT+AGG 0.442413 4_1:+25776942 Msa0541740:five_prime_UTR
ATAATCATAAGTAGCAAAGT+TGG 0.442518 4_1:+25776982 Msa0541740:five_prime_UTR
ACCTTTCCAATGCAGCAATT+GGG 0.443337 4_1:-25781237 None:intergenic
TGTTGCAGGATGATAAAGTA+AGG 0.446203 4_1:+25778250 Msa0541740:intron
GTATAGATTCAAATCCATCT+TGG 0.446520 4_1:+25777080 Msa0541740:CDS
AGGAGGATCATATGCATTCA+TGG 0.453580 4_1:+25778353 Msa0541740:CDS
TCATGTAATAACAGAACAAA+AGG 0.465001 4_1:+25781112 Msa0541740:three_prime_UTR
ACATCATTTCCACCCATTGA+AGG 0.466107 4_1:-25777280 None:intergenic
AACATAGTTGTAGGACAGAC+AGG 0.467914 4_1:+25779445 Msa0541740:CDS
TCACGAATAATGGATACAAT+GGG 0.468928 4_1:-25778378 None:intergenic
TGCTCATACCAAAGCTGGAT+GGG 0.470991 4_1:+25780550 Msa0541740:CDS
TGCAAACACTGTTTGGAACC+CGG 0.473980 4_1:+25778316 Msa0541740:CDS
AATGATAGATGACCCACAAT+TGG 0.477393 4_1:+25778413 Msa0541740:CDS
TCCTATCACTGTTGGTAACC+GGG 0.477745 4_1:-25778334 None:intergenic
GCCAACCGATACCACGGCTC+AGG 0.478834 4_1:-25779870 None:intergenic
AGAAATGTACTAACCAATTG+TGG 0.479205 4_1:-25778426 None:intergenic
GAATAGACAAGCCTAAGAAA+AGG 0.479304 4_1:-25780484 None:intergenic
GGTCCTGCTCATACCAAAGC+TGG 0.479360 4_1:+25780545 Msa0541740:CDS
TCACCAATGGATCAACTTCA+GGG 0.480974 4_1:+25777046 Msa0541740:CDS
GAAACTCACCCATCCAGCTT+TGG 0.485860 4_1:-25780558 None:intergenic
GTACACAGAAACTGTTGAAC+CGG 0.486278 4_1:-25779935 None:intergenic
ACCCGGTTACCAACAGTGAT+AGG 0.489452 4_1:+25778333 Msa0541740:CDS
ATTGAAGGAACAAGAAATGA+AGG 0.499359 4_1:-25777265 None:intergenic
TTGTGTTCAGAGAGATTAGC+GGG 0.499435 4_1:-25776922 None:intergenic
GCACCCCACTCAAGAGGGTA+TGG 0.499949 4_1:-25779604 None:intergenic
ATGTAACTCAACATAGTTGT+AGG 0.501947 4_1:+25779436 Msa0541740:CDS
TCATCTATCATTGCAAAAGA+AGG 0.502196 4_1:-25778402 None:intergenic
AAACCCTGAAGTTGATCCAT+TGG 0.502837 4_1:-25777049 None:intergenic
AAGAAGCGGTTGAGATTGAA+AGG 0.503438 4_1:-25780991 None:intergenic
AACCGGTTAGTGTTCCGAAA+AGG 0.514137 4_1:-25779918 None:intergenic
ATGAGGAACCTCTTTATCAC+TGG 0.516659 4_1:+25780455 Msa0541740:CDS
CATGTCCTGAGCCGTGGTAT+CGG 0.518412 4_1:+25779865 Msa0541740:CDS
AATAGACAAGCCTAAGAAAA+GGG 0.522987 4_1:-25780483 None:intergenic
TTTCTTGTTCCTTCAATGGG+TGG 0.525960 4_1:+25777271 Msa0541740:CDS
GCAATAATCAATGCAACAGT+TGG 0.533111 4_1:-25780850 None:intergenic
AAGGACAGTGCCAAAGATAG+AGG 0.534675 4_1:+25780901 Msa0541740:CDS
TCCTGAGCCGTGGTATCGGT+TGG 0.538613 4_1:+25779869 Msa0541740:CDS
TATGATCCTCCTATCACTGT+TGG 0.541705 4_1:-25778342 None:intergenic
GGTGCTCCTACATTTGATGC+TGG 0.543276 4_1:+25779622 Msa0541740:CDS
CCACGGCTCAGGACATGAGC+AGG 0.543664 4_1:-25779859 None:intergenic
CATCCAGCTTTGGTATGAGC+AGG 0.545272 4_1:-25780548 None:intergenic
GAAATGTACTAACCAATTGT+GGG 0.546919 4_1:-25778425 None:intergenic
GAGTGGCCAGCATCAAATGT+AGG 0.547055 4_1:-25779628 None:intergenic
CTGCTCATACCAAAGCTGGA+TGG 0.547379 4_1:+25780549 Msa0541740:CDS
GTCACGAATAATGGATACAA+TGG 0.549123 4_1:-25778379 None:intergenic
CAGAAACTTGAATAACCCTT+CGG 0.550365 4_1:-25780075 None:intergenic
CTCAGGACATGAGCAGGCGG+TGG 0.550799 4_1:-25779853 None:intergenic
ACCCAATTGCTGCATTGGAA+AGG 0.551724 4_1:+25781236 Msa0541740:three_prime_UTR
CAACTATGTTGAGTTACATC+CGG 0.554296 4_1:-25779432 None:intergenic
GGGCAACACCAGTGATAAAG+AGG 0.555822 4_1:-25780463 None:intergenic
GACATGAGCAGGCGGTGGTG+TGG 0.560084 4_1:-25779848 None:intergenic
CATGCAAACATACCCCAAGA+TGG 0.560663 4_1:-25777094 None:intergenic
TAACCCTTCGGCTGCCAACA+CGG 0.560723 4_1:-25780063 None:intergenic
TCAAGCTAGTAGGATTTGGA+AGG 0.562599 4_1:+25776952 Msa0541740:five_prime_UTR
AAACTAAGTGTCACAGTAGT+GGG 0.565633 4_1:+25776862 Msa0541740:five_prime_UTR
ATTTGACAGAGGTTTCCCTA+TGG 0.567601 4_1:+25778874 Msa0541740:CDS
GTTCCTCATTGAATTCATGT+TGG 0.571510 4_1:-25780441 None:intergenic
ATCATAAGTAGCAAAGTTGG+AGG 0.573057 4_1:+25776985 Msa0541740:five_prime_UTR
GAAACTAAGTGTCACAGTAG+TGG 0.573297 4_1:+25776861 Msa0541740:five_prime_UTR
GCAACCGTGTTGGCAGCCGA+AGG 0.576172 4_1:+25780059 Msa0541740:CDS
CACTACAAACAAGATTAGCA+TGG 0.579230 4_1:-25779031 None:intergenic
CTCCTAGGAAGCAACCGTGT+TGG 0.580038 4_1:+25780049 Msa0541740:CDS
TTTCAGAGAATACACTATCA+GGG 0.580243 4_1:+25780514 Msa0541740:CDS
AGTTGGTGAAGAATAGAAGA+TGG 0.581474 4_1:-25780833 None:intergenic
CCTGCTCATGTCCTGAGCCG+TGG 0.582782 4_1:+25779859 Msa0541740:CDS
TTTCCAATGCAGCAATTGGG+TGG 0.585119 4_1:-25781234 None:intergenic
AGCCGTGGTATCGGTTGGCA+GGG 0.590320 4_1:+25779874 Msa0541740:CDS
GGTATGAGCAGGACCATGAA+AGG 0.591544 4_1:-25780537 None:intergenic
AATAAAACCACTAAAAGTGT+TGG 0.592486 4_1:-25781191 None:intergenic
CATCTATCATTGCAAAAGAA+GGG 0.595562 4_1:-25778401 None:intergenic
TTCCCTGCCAACCGATACCA+CGG 0.595568 4_1:-25779876 None:intergenic
AGAGCAAATCTCTCTAGTAT+CGG 0.602160 4_1:-25779339 None:intergenic
CATCTTGACAGAGAGAATGT+AGG 0.602743 4_1:+25780025 Msa0541740:intron
ACTACAAACAAGATTAGCAT+GGG 0.605867 4_1:-25779030 None:intergenic
CAGCCATCATTCCAAAAGAG+TGG 0.607490 4_1:-25779645 None:intergenic
AGATTCCATACCCTCTTGAG+TGG 0.607942 4_1:+25779599 Msa0541740:CDS
ATGCTACAATTAGTGCACCT+TGG 0.608851 4_1:-25778611 None:intergenic
TAGGAGCACCCCACTCAAGA+GGG 0.617390 4_1:-25779609 None:intergenic
AGAGATAAGTCATTCACCAA+TGG 0.619804 4_1:+25777033 Msa0541740:CDS
GCACATCTATTGACAGCGAG+TGG 0.619907 4_1:+25779393 Msa0541740:CDS
GATTCCATACCCTCTTGAGT+GGG 0.620879 4_1:+25779600 Msa0541740:CDS
GTAGGAGCACCCCACTCAAG+AGG 0.622953 4_1:-25779610 None:intergenic
AAGATAGAGGAATGCCATGG+TGG 0.624875 4_1:+25780914 Msa0541740:CDS
TATGTTGAGTTACATCCGGC+CGG 0.624907 4_1:-25779428 None:intergenic
CAACCGTGTTGGCAGCCGAA+GGG 0.626544 4_1:+25780060 Msa0541740:CDS
AGATAGAGGAATGCCATGGT+GGG 0.635902 4_1:+25780915 Msa0541740:CDS
GTTGCAGGATGATAAAGTAA+GGG 0.641584 4_1:+25778251 Msa0541740:intron
TAAGTGTCACAGTAGTGGGA+AGG 0.643084 4_1:+25776866 Msa0541740:five_prime_UTR
TGGAGCATACAAACACCGGC+CGG 0.643571 4_1:+25779413 Msa0541740:CDS
ATAGATTCAAATCCATCTTG+GGG 0.643928 4_1:+25777082 Msa0541740:CDS
CGGTTACCAACAGTGATAGG+AGG 0.653551 4_1:+25778336 Msa0541740:CDS
GCAGGATGATAAAGTAAGGG+TGG 0.654485 4_1:+25778254 Msa0541740:intron
AGCACAATGAGAGCAGTCCA+AGG 0.659630 4_1:+25778594 Msa0541740:CDS
CGAGTGGAGCATACAAACAC+CGG 0.663938 4_1:+25779409 Msa0541740:CDS
CGGCTCAGGACATGAGCAGG+CGG 0.664877 4_1:-25779856 None:intergenic
ATTCCATACCCTCTTGAGTG+GGG 0.671790 4_1:+25779601 Msa0541740:CDS
GTTCTAAACTTAGCCCACCA+TGG 0.673056 4_1:-25780928 None:intergenic
GTTGTGTTCAGAGAGATTAG+CGG 0.673069 4_1:-25776923 None:intergenic
TATTGGTACCAACCAAGGAG+CGG 0.679674 4_1:-25779484 None:intergenic
ATTACTGGAACCATTCCAAG+TGG 0.685617 4_1:-25778830 None:intergenic
CCAAAGATAGAGGAATGCCA+TGG 0.686802 4_1:+25780911 Msa0541740:CDS
TCACCAACATGAATTCAATG+AGG 0.689628 4_1:+25780438 Msa0541740:CDS
ACATAGTTGTAGGACAGACA+GGG 0.696081 4_1:+25779446 Msa0541740:CDS
TCTATGATGGAGGAAAGAAG+CGG 0.698502 4_1:-25781005 None:intergenic
TTACTGGAACCATTCCAAGT+GGG 0.700944 4_1:-25778829 None:intergenic
CACGAATAATGGATACAATG+GGG 0.733637 4_1:-25778377 None:intergenic
TGCATATGCCCATATCACTG+TGG 0.777461 4_1:-25779373 None:intergenic
TGTGTTCAGAGAGATTAGCG+GGG 0.790744 4_1:-25776921 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTAATAAATGTGTTT+TGG - chr4_1:25777700-25777719 None:intergenic 10.0%
!!! ATCTAAATATATATTTTTGT+TGG + chr4_1:25778943-25778962 Msa0541740:intron 10.0%
!! CTTCACAAATATATAAAATA+AGG - chr4_1:25778694-25778713 None:intergenic 15.0%
!!! ATATGGTTTTCATTTTTTAT+GGG + chr4_1:25779982-25780001 Msa0541740:intron 15.0%
!!! TGGTTTTCAACATTATATTT+TGG + chr4_1:25777219-25777238 Msa0541740:CDS 20.0%
!! TAGTTAAAAGAATTGAAGTT+AGG - chr4_1:25777315-25777334 None:intergenic 20.0%
!!! TTATTTTTGATAAGATGCAA+AGG + chr4_1:25778049-25778068 Msa0541740:intron 20.0%
!!! TATTTTTGATAAGATGCAAA+GGG + chr4_1:25778050-25778069 Msa0541740:intron 20.0%
!!! TATTTTCTTTTTATCGTGTT+TGG + chr4_1:25778083-25778102 Msa0541740:intron 20.0%
!!! TTTAAGTTTAAATTAGCTTG+TGG + chr4_1:25779096-25779115 Msa0541740:intron 20.0%
!! CAAAGAAAATATTGAACTAT+TGG + chr4_1:25779543-25779562 Msa0541740:intron 20.0%
!! TATCATTGGAAAAATTATAC+CGG + chr4_1:25779715-25779734 Msa0541740:intron 20.0%
!!! TTTTCTTATTCTCATTCATA+TGG + chr4_1:25779965-25779984 Msa0541740:intron 20.0%
!!! CATATGGTTTTCATTTTTTA+TGG + chr4_1:25779981-25780000 Msa0541740:intron 20.0%
!!! TAATTTGTTTCAGGTAAATT+TGG + chr4_1:25780224-25780243 Msa0541740:intron 20.0%
!!! TATGTAAGAATTTTCTATGA+TGG - chr4_1:25781021-25781040 None:intergenic 20.0%
! ATAATCATAAGTAGCAAAGT+TGG + chr4_1:25776982-25777001 Msa0541740:five_prime_UTR 25.0%
! TATAGATTCAAATCCATCTT+GGG + chr4_1:25777081-25777100 Msa0541740:CDS 25.0%
!!! CAACATTATATTTTGGCATT+AGG + chr4_1:25777226-25777245 Msa0541740:CDS 25.0%
!! TAATTCCCTTTTATTGTGTT+TGG + chr4_1:25777425-25777444 Msa0541740:intron 25.0%
! TTGATCCAAACACAATAAAA+GGG - chr4_1:25777433-25777452 None:intergenic 25.0%
! ATTGATCCAAACACAATAAA+AGG - chr4_1:25777434-25777453 None:intergenic 25.0%
!!! TGGATCAATGTTTTAACAAT+CGG + chr4_1:25777445-25777464 Msa0541740:intron 25.0%
!!! TTTGTCTATTGGTTTAATCA+TGG + chr4_1:25777556-25777575 Msa0541740:intron 25.0%
!! TGAATTTTACACTGTTGTTA+AGG + chr4_1:25777628-25777647 Msa0541740:intron 25.0%
! AAATACCCATGACTATTTAT+TGG + chr4_1:25777888-25777907 Msa0541740:intron 25.0%
! TCTATCCAATAAATAGTCAT+GGG - chr4_1:25777896-25777915 None:intergenic 25.0%
!!! CTACTTTGATTTGATTTTGA+TGG + chr4_1:25778010-25778029 Msa0541740:intron 25.0%
!!! ATTTTTTTTGTCTTGTGTAC+TGG + chr4_1:25778109-25778128 Msa0541740:intron 25.0%
!! ATCCAGCATACAAATTATTT+TGG + chr4_1:25778632-25778651 Msa0541740:CDS 25.0%
!! TCCAGCATACAAATTATTTT+GGG + chr4_1:25778633-25778652 Msa0541740:CDS 25.0%
!!! TTTTGGGATTTAGTCAAATA+TGG + chr4_1:25778649-25778668 Msa0541740:CDS 25.0%
!! TTTGGGATTTAGTCAAATAT+GGG + chr4_1:25778650-25778669 Msa0541740:CDS 25.0%
! AAACCAACTAATGTAATTAC+TGG - chr4_1:25778848-25778867 None:intergenic 25.0%
!!! GTAATTACATTAGTTGGTTT+TGG + chr4_1:25778848-25778867 Msa0541740:CDS 25.0%
! CAACACATCATAATACATTA+AGG - chr4_1:25779282-25779301 None:intergenic 25.0%
! CTTCATAAAATGACTATCAT+TGG + chr4_1:25779701-25779720 Msa0541740:intron 25.0%
!!! TTATTATTTTGACAGTCAAC+TGG + chr4_1:25779793-25779812 Msa0541740:intron 25.0%
! ATGATATTCTTTGCAATGTT+AGG + chr4_1:25780106-25780125 Msa0541740:CDS 25.0%
! TGAAACAAATTATGAAACAC+AGG - chr4_1:25780216-25780235 None:intergenic 25.0%
!!! TGTGTTTCATAATTTGTTTC+AGG + chr4_1:25780215-25780234 Msa0541740:intron 25.0%
! AGTATATAGCAGCAAAAATA+GGG - chr4_1:25780274-25780293 None:intergenic 25.0%
!! AGCATCTATTGATAATTGTT+TGG + chr4_1:25780349-25780368 Msa0541740:intron 25.0%
!!! ATATTTTTTTCAGCTTCTGT+AGG + chr4_1:25780398-25780417 Msa0541740:intron 25.0%
!!! TATTTTTTTCAGCTTCTGTA+GGG + chr4_1:25780399-25780418 Msa0541740:intron 25.0%
! TCATGTAATAACAGAACAAA+AGG + chr4_1:25781112-25781131 Msa0541740:three_prime_UTR 25.0%
!! ATTTTTACCAACACTTTTAG+TGG + chr4_1:25781184-25781203 Msa0541740:three_prime_UTR 25.0%
!! AATAAAACCACTAAAAGTGT+TGG - chr4_1:25781194-25781213 None:intergenic 25.0%
! AAAGGTTCGATATATGTTTA+CGG + chr4_1:25781254-25781273 Msa0541740:three_prime_UTR 25.0%
!! AAACACCGAGAATTTTTATT+TGG + chr4_1:25781286-25781305 Msa0541740:three_prime_UTR 25.0%
GTATAGATTCAAATCCATCT+TGG + chr4_1:25777080-25777099 Msa0541740:CDS 30.0%
ATAGATTCAAATCCATCTTG+GGG + chr4_1:25777082-25777101 Msa0541740:CDS 30.0%
!! GTGTTTTGAATTGTTAACAG+TGG + chr4_1:25777183-25777202 Msa0541740:intron 30.0%
ATTGAAGGAACAAGAAATGA+AGG - chr4_1:25777268-25777287 None:intergenic 30.0%
TTCATTTCTTGTTCCTTCAA+TGG + chr4_1:25777267-25777286 Msa0541740:CDS 30.0%
TCATTTCTTGTTCCTTCAAT+GGG + chr4_1:25777268-25777287 Msa0541740:CDS 30.0%
AACTGGTTGAATTGGAAATT+GGG + chr4_1:25777499-25777518 Msa0541740:intron 30.0%
GTATGTTTAACAGGTTGTAA+CGG + chr4_1:25777522-25777541 Msa0541740:intron 30.0%
! TAACCTACTAGTTTGTCTAT+TGG + chr4_1:25777545-25777564 Msa0541740:intron 30.0%
AAACCAATAGACAAACTAGT+AGG - chr4_1:25777551-25777570 None:intergenic 30.0%
AGTTGAATCAGATTGAATAG+TGG + chr4_1:25777593-25777612 Msa0541740:intron 30.0%
GACAATGAAAAATACTAGCA+AGG + chr4_1:25777824-25777843 Msa0541740:intron 30.0%
CTCTATCCAATAAATAGTCA+TGG - chr4_1:25777897-25777916 None:intergenic 30.0%
CATGACTATTTATTGGATAG+AGG + chr4_1:25777895-25777914 Msa0541740:intron 30.0%
!! TTGATTTTGATGGATGATAC+TGG + chr4_1:25778020-25778039 Msa0541740:intron 30.0%
TGAATATCAATCCTCTATCT+TGG - chr4_1:25778218-25778237 None:intergenic 30.0%
CATATATTGCTTATTGTTGC+AGG + chr4_1:25778236-25778255 Msa0541740:intron 30.0%
!!! CAAACTCTACTTTTTGTTGA+AGG + chr4_1:25778279-25778298 Msa0541740:CDS 30.0%
!! TCACGAATAATGGATACAAT+GGG - chr4_1:25778381-25778400 None:intergenic 30.0%
CATCTATCATTGCAAAAGAA+GGG - chr4_1:25778404-25778423 None:intergenic 30.0%
TCATCTATCATTGCAAAAGA+AGG - chr4_1:25778405-25778424 None:intergenic 30.0%
GAAATGTACTAACCAATTGT+GGG - chr4_1:25778428-25778447 None:intergenic 30.0%
AGAAATGTACTAACCAATTG+TGG - chr4_1:25778429-25778448 None:intergenic 30.0%
! TCCCAAAATAATTTGTATGC+TGG - chr4_1:25778637-25778656 None:intergenic 30.0%
! AAATATGGGCTATTTGTTCT+AGG + chr4_1:25778664-25778683 Msa0541740:CDS 30.0%
AAAATCTGCATGAAAGGAAA+AGG - chr4_1:25778805-25778824 None:intergenic 30.0%
GTTCCAGTAATTACATTAGT+TGG + chr4_1:25778842-25778861 Msa0541740:CDS 30.0%
ACTACAAACAAGATTAGCAT+GGG - chr4_1:25779033-25779052 None:intergenic 30.0%
TCAGGTATATGTCAAATAAC+TGG + chr4_1:25779059-25779078 Msa0541740:intron 30.0%
TATATGTCAAATAACTGGAC+TGG + chr4_1:25779064-25779083 Msa0541740:intron 30.0%
!! TTAAATTAGCTTGTGGAATG+TGG + chr4_1:25779103-25779122 Msa0541740:intron 30.0%
GTAACAAATTGAACAGAAAG+AGG - chr4_1:25779235-25779254 None:intergenic 30.0%
!! TCAATTTGTTACACCTGAAT+AGG + chr4_1:25779243-25779262 Msa0541740:intron 30.0%
TCATTCATTCAAACCTATTC+AGG - chr4_1:25779259-25779278 None:intergenic 30.0%
ATGTAACTCAACATAGTTGT+AGG + chr4_1:25779436-25779455 Msa0541740:CDS 30.0%
!!! TGTTTTAGTCTCATTAGTTG+AGG + chr4_1:25779669-25779688 Msa0541740:CDS 30.0%
!!! GTTTTCATTTTTTATGGGAC+AGG + chr4_1:25779987-25780006 Msa0541740:intron 30.0%
CAGTATATAGCAGCAAAAAT+AGG - chr4_1:25780275-25780294 None:intergenic 30.0%
!! GCTATATACTGTGTTTTGTT+TGG + chr4_1:25780284-25780303 Msa0541740:CDS 30.0%
GATGCTGAAGTAAATTCAAA+GGG - chr4_1:25780335-25780354 None:intergenic 30.0%
AGATGCTGAAGTAAATTCAA+AGG - chr4_1:25780336-25780355 None:intergenic 30.0%
! GATAATTGTTTGGTCTTCTT+TGG + chr4_1:25780359-25780378 Msa0541740:intron 30.0%
AATAGACAAGCCTAAGAAAA+GGG - chr4_1:25780486-25780505 None:intergenic 30.0%
!! GTGTATTCTCTGAAATATTC+AGG - chr4_1:25780509-25780528 None:intergenic 30.0%
ATTTCAGAGAATACACTATC+AGG + chr4_1:25780513-25780532 Msa0541740:CDS 30.0%
TTTCAGAGAATACACTATCA+GGG + chr4_1:25780514-25780533 Msa0541740:CDS 30.0%
! GATGAGATATGATAGTGAAA+CGG - chr4_1:25780598-25780617 None:intergenic 30.0%
TCATTGAACTGCAAAATCAA+AGG - chr4_1:25780802-25780821 None:intergenic 30.0%
AAGAATAGAAGATGGTATTC+AGG - chr4_1:25780828-25780847 None:intergenic 30.0%
ATTGATTATTGCTGTGTTCT+TGG + chr4_1:25780861-25780880 Msa0541740:CDS 30.0%
! GTAAGAATTTTCTATGATGG+AGG - chr4_1:25781018-25781037 None:intergenic 30.0%
AAACTAAGTGTCACAGTAGT+GGG + chr4_1:25776862-25776881 Msa0541740:five_prime_UTR 35.0%
CAACATTTCTTCAAGCTAGT+AGG + chr4_1:25776942-25776961 Msa0541740:five_prime_UTR 35.0%
TTCTTCAAGCTAGTAGGATT+TGG + chr4_1:25776948-25776967 Msa0541740:five_prime_UTR 35.0%
ATCATAAGTAGCAAAGTTGG+AGG + chr4_1:25776985-25777004 Msa0541740:five_prime_UTR 35.0%
AGAGATAAGTCATTCACCAA+TGG + chr4_1:25777033-25777052 Msa0541740:CDS 35.0%
CTCTATGCAAATCTCTACTT+AGG + chr4_1:25777392-25777411 Msa0541740:intron 35.0%
TTCAGTTCAACTGGTTGAAT+TGG + chr4_1:25777491-25777510 Msa0541740:intron 35.0%
CAACTGGTTGAATTGGAAAT+TGG + chr4_1:25777498-25777517 Msa0541740:intron 35.0%
ACTGGTTGAATTGGAAATTG+GGG + chr4_1:25777500-25777519 Msa0541740:intron 35.0%
GAAATTGGGGTATGTTTAAC+AGG + chr4_1:25777513-25777532 Msa0541740:intron 35.0%
!! GTCTATTGGTTTAATCATGG+TGG + chr4_1:25777559-25777578 Msa0541740:intron 35.0%
TTGTCACATGCTAAATGAAG+TGG + chr4_1:25778135-25778154 Msa0541740:intron 35.0%
TGTTGCAGGATGATAAAGTA+AGG + chr4_1:25778250-25778269 Msa0541740:intron 35.0%
GTTGCAGGATGATAAAGTAA+GGG + chr4_1:25778251-25778270 Msa0541740:intron 35.0%
! ACACTTTTGCAAACACTGTT+TGG + chr4_1:25778309-25778328 Msa0541740:CDS 35.0%
!! CACGAATAATGGATACAATG+GGG - chr4_1:25778380-25778399 None:intergenic 35.0%
!! GTCACGAATAATGGATACAA+TGG - chr4_1:25778382-25778401 None:intergenic 35.0%
AAAAGAAGGGTCACGAATAA+TGG - chr4_1:25778391-25778410 None:intergenic 35.0%
AATGATAGATGACCCACAAT+TGG + chr4_1:25778413-25778432 Msa0541740:CDS 35.0%
!!! GGTTTTGGATTATTTGACAG+AGG + chr4_1:25778863-25778882 Msa0541740:CDS 35.0%
CAGTGTTGTACTATACCATA+GGG - chr4_1:25778892-25778911 None:intergenic 35.0%
TCAGTGTTGTACTATACCAT+AGG - chr4_1:25778893-25778912 None:intergenic 35.0%
CACTACAAACAAGATTAGCA+TGG - chr4_1:25779034-25779053 None:intergenic 35.0%
AGAGCAAATCTCTCTAGTAT+CGG - chr4_1:25779342-25779361 None:intergenic 35.0%
TCATAACAACCACAGTGATA+TGG + chr4_1:25779364-25779383 Msa0541740:CDS 35.0%
CATAACAACCACAGTGATAT+GGG + chr4_1:25779365-25779384 Msa0541740:CDS 35.0%
CAACTATGTTGAGTTACATC+CGG - chr4_1:25779435-25779454 None:intergenic 35.0%
! GGAATTGGAATTTTGCTGAA+TGG + chr4_1:25779895-25779914 Msa0541740:CDS 35.0%
! ATTTTGCTGAATGGCCTTTT+CGG + chr4_1:25779904-25779923 Msa0541740:CDS 35.0%
CAGAAACTTGAATAACCCTT+CGG - chr4_1:25780078-25780097 None:intergenic 35.0%
TTAGGTGAGTGGCAAATTAT+AGG + chr4_1:25780124-25780143 Msa0541740:intron 35.0%
TAGGTGAGTGGCAAATTATA+GGG + chr4_1:25780125-25780144 Msa0541740:intron 35.0%
ATAGCAGCAAAAATAGGGAA+TGG - chr4_1:25780269-25780288 None:intergenic 35.0%
!!! TGTGTTTTGTTTGGTCTTGT+AGG + chr4_1:25780293-25780312 Msa0541740:CDS 35.0%
TCACCAACATGAATTCAATG+AGG + chr4_1:25780438-25780457 Msa0541740:CDS 35.0%
GTTCCTCATTGAATTCATGT+TGG - chr4_1:25780444-25780463 None:intergenic 35.0%
GAATAGACAAGCCTAAGAAA+AGG - chr4_1:25780487-25780506 None:intergenic 35.0%
!! AGTTGGTGAAGAATAGAAGA+TGG - chr4_1:25780836-25780855 None:intergenic 35.0%
GCAATAATCAATGCAACAGT+TGG - chr4_1:25780853-25780872 None:intergenic 35.0%
GGACAATACTCTTGACTATA+AGG + chr4_1:25780882-25780901 Msa0541740:CDS 35.0%
AAGAGACATGTTAGAGTTAG+AGG + chr4_1:25781040-25781059 Msa0541740:three_prime_UTR 35.0%
AATTGGGTGGACAATGAATT+TGG - chr4_1:25781224-25781243 None:intergenic 35.0%
GAAACTAAGTGTCACAGTAG+TGG + chr4_1:25776861-25776880 Msa0541740:five_prime_UTR 40.0%
TTGTGTTCAGAGAGATTAGC+GGG - chr4_1:25776925-25776944 None:intergenic 40.0%
GTTGTGTTCAGAGAGATTAG+CGG - chr4_1:25776926-25776945 None:intergenic 40.0%
TCAAGCTAGTAGGATTTGGA+AGG + chr4_1:25776952-25776971 Msa0541740:five_prime_UTR 40.0%
AGCAAAGTTGGAGGTGATTA+TGG + chr4_1:25776994-25777013 Msa0541740:exon 40.0%
GGTGAATGACTTATCTCTTC+TGG - chr4_1:25777031-25777050 None:intergenic 40.0%
TTCACCAATGGATCAACTTC+AGG + chr4_1:25777045-25777064 Msa0541740:CDS 40.0%
TCACCAATGGATCAACTTCA+GGG + chr4_1:25777046-25777065 Msa0541740:CDS 40.0%
! AAACCCTGAAGTTGATCCAT+TGG - chr4_1:25777052-25777071 None:intergenic 40.0%
ACAGTGGAGACAATACTTCT+TGG + chr4_1:25777199-25777218 Msa0541740:intron 40.0%
TTTCTTGTTCCTTCAATGGG+TGG + chr4_1:25777271-25777290 Msa0541740:CDS 40.0%
ACATCATTTCCACCCATTGA+AGG - chr4_1:25777283-25777302 None:intergenic 40.0%
TCACATGCTAAATGAAGTGG+TGG + chr4_1:25778138-25778157 Msa0541740:intron 40.0%
CACATGCTAAATGAAGTGGT+GGG + chr4_1:25778139-25778158 Msa0541740:intron 40.0%
TCTCCCAAAAGAGGAAAATC+TGG + chr4_1:25778162-25778181 Msa0541740:intron 40.0%
! CCACCAGATTTTCCTCTTTT+GGG - chr4_1:25778168-25778187 None:intergenic 40.0%
! TCCACCAGATTTTCCTCTTT+TGG - chr4_1:25778169-25778188 None:intergenic 40.0%
CCTCTATCTTGGTAAGTTTG+AGG - chr4_1:25778207-25778226 None:intergenic 40.0%
CCTCAAACTTACCAAGATAG+AGG + chr4_1:25778204-25778223 Msa0541740:intron 40.0%
TATGATCCTCCTATCACTGT+TGG - chr4_1:25778345-25778364 None:intergenic 40.0%
AGGAGGATCATATGCATTCA+TGG + chr4_1:25778353-25778372 Msa0541740:CDS 40.0%
GAGATACACAAACATGGAAG+AGG - chr4_1:25778562-25778581 None:intergenic 40.0%
TCATTGTGCTAAGAAACCTC+TGG - chr4_1:25778584-25778603 None:intergenic 40.0%
ATGCTACAATTAGTGCACCT+TGG - chr4_1:25778614-25778633 None:intergenic 40.0%
GGCTGAAAAATCTGCATGAA+AGG - chr4_1:25778811-25778830 None:intergenic 40.0%
!! ATTTTTCAGCCCACTTGGAA+TGG + chr4_1:25778820-25778839 Msa0541740:CDS 40.0%
TTACTGGAACCATTCCAAGT+GGG - chr4_1:25778832-25778851 None:intergenic 40.0%
ATTACTGGAACCATTCCAAG+TGG - chr4_1:25778833-25778852 None:intergenic 40.0%
ATTTGACAGAGGTTTCCCTA+TGG + chr4_1:25778874-25778893 Msa0541740:CDS 40.0%
GAATACAAGTACAAGTCACG+TGG - chr4_1:25778918-25778937 None:intergenic 40.0%
CTTGTTTGTAGTGTTCTCTC+AGG + chr4_1:25779041-25779060 Msa0541740:CDS 40.0%
AAAGCCTAGAGCAAGAAAGA+AGG + chr4_1:25779184-25779203 Msa0541740:intron 40.0%
AACATAGTTGTAGGACAGAC+AGG + chr4_1:25779445-25779464 Msa0541740:CDS 40.0%
ACATAGTTGTAGGACAGACA+GGG + chr4_1:25779446-25779465 Msa0541740:CDS 40.0%
TTCGACAACAACGATGCTAT+TGG - chr4_1:25779504-25779523 None:intergenic 40.0%
!! CATTGACTCTTGACACATGT+TGG + chr4_1:25779566-25779585 Msa0541740:intron 40.0%
TGTGTGTTACGTAAGCATAC+CGG - chr4_1:25779737-25779756 None:intergenic 40.0%
GTACACAGAAACTGTTGAAC+CGG - chr4_1:25779938-25779957 None:intergenic 40.0%
CATCTTGACAGAGAGAATGT+AGG + chr4_1:25780025-25780044 Msa0541740:intron 40.0%
! AGGGTTATTCAAGTTTCTGC+TGG + chr4_1:25780079-25780098 Msa0541740:CDS 40.0%
TCTTTGCAATGTTAGGTGAG+TGG + chr4_1:25780113-25780132 Msa0541740:intron 40.0%
ATGAGGAACCTCTTTATCAC+TGG + chr4_1:25780455-25780474 Msa0541740:CDS 40.0%
ATCATATCTCATCTCGTCTC+AGG + chr4_1:25780605-25780624 Msa0541740:intron 40.0%
TCATATCTCATCTCGTCTCA+GGG + chr4_1:25780606-25780625 Msa0541740:intron 40.0%
AAGAAGCGGTTGAGATTGAA+AGG - chr4_1:25780994-25781013 None:intergenic 40.0%
! TCTATGATGGAGGAAAGAAG+CGG - chr4_1:25781008-25781027 None:intergenic 40.0%
ACCTTTCCAATGCAGCAATT+GGG - chr4_1:25781240-25781259 None:intergenic 40.0%
AACCTTTCCAATGCAGCAAT+TGG - chr4_1:25781241-25781260 None:intergenic 40.0%
! TAAGTGTCACAGTAGTGGGA+AGG + chr4_1:25776866-25776885 Msa0541740:five_prime_UTR 45.0%
TGTGTTCAGAGAGATTAGCG+GGG - chr4_1:25776924-25776943 None:intergenic 45.0%
CATGCAAACATACCCCAAGA+TGG - chr4_1:25777097-25777116 None:intergenic 45.0%
ACCAGTCAGTTCAGTTCAAC+TGG + chr4_1:25777482-25777501 Msa0541740:intron 45.0%
ACCAGTTGAACTGAACTGAC+TGG - chr4_1:25777486-25777505 None:intergenic 45.0%
CCCAAAAGAGGAAAATCTGG+TGG + chr4_1:25778165-25778184 Msa0541740:intron 45.0%
GCAGGATGATAAAGTAAGGG+TGG + chr4_1:25778254-25778273 Msa0541740:intron 45.0%
! TGCAAACACTGTTTGGAACC+CGG + chr4_1:25778316-25778335 Msa0541740:CDS 45.0%
!! TCCTATCACTGTTGGTAACC+GGG - chr4_1:25778337-25778356 None:intergenic 45.0%
!! CTCCTATCACTGTTGGTAAC+CGG - chr4_1:25778338-25778357 None:intergenic 45.0%
! CCTCTGGAGATACACAAACA+TGG - chr4_1:25778568-25778587 None:intergenic 45.0%
CCATGTTTGTGTATCTCCAG+AGG + chr4_1:25778565-25778584 Msa0541740:intron 45.0%
!! TGCAGATTTTTCAGCCCACT+TGG + chr4_1:25778815-25778834 Msa0541740:intron 45.0%
ATGCTGTTCTGTCCTTTCTC+AGG + chr4_1:25778981-25779000 Msa0541740:intron 45.0%
TGTTCTGTCCTTTCTCAGGT+GGG + chr4_1:25778985-25779004 Msa0541740:intron 45.0%
GTGGGGACTTGTGTTGAAAT+TGG + chr4_1:25779003-25779022 Msa0541740:CDS 45.0%
TCCTCCTTCTTTCTTGCTCT+AGG - chr4_1:25779191-25779210 None:intergenic 45.0%
TGCATATGCCCATATCACTG+TGG - chr4_1:25779376-25779395 None:intergenic 45.0%
TATGTTGAGTTACATCCGGC+CGG - chr4_1:25779431-25779450 None:intergenic 45.0%
ATCTCATTTCTTCCGCTCCT+TGG + chr4_1:25779472-25779491 Msa0541740:CDS 45.0%
TATTGGTACCAACCAAGGAG+CGG - chr4_1:25779487-25779506 None:intergenic 45.0%
GATGCTATTGGTACCAACCA+AGG - chr4_1:25779492-25779511 None:intergenic 45.0%
AGATTCCATACCCTCTTGAG+TGG + chr4_1:25779599-25779618 Msa0541740:CDS 45.0%
GATTCCATACCCTCTTGAGT+GGG + chr4_1:25779600-25779619 Msa0541740:CDS 45.0%
ATTCCATACCCTCTTGAGTG+GGG + chr4_1:25779601-25779620 Msa0541740:CDS 45.0%
! TTTGATGCTGGCCACTCTTT+TGG + chr4_1:25779634-25779653 Msa0541740:CDS 45.0%
!!! TGGCCACTCTTTTGGAATGA+TGG + chr4_1:25779642-25779661 Msa0541740:CDS 45.0%
CAGCCATCATTCCAAAAGAG+TGG - chr4_1:25779648-25779667 None:intergenic 45.0%
AACCGGTTAGTGTTCCGAAA+AGG - chr4_1:25779921-25779940 None:intergenic 45.0%
AGAGAGAATGTAGGACTCCT+AGG + chr4_1:25780034-25780053 Msa0541740:intron 45.0%
!!! ACTGGTGTTGCCCTTTTCTT+AGG + chr4_1:25780473-25780492 Msa0541740:CDS 45.0%
TACACTATCAGGGCCTTTCA+TGG + chr4_1:25780524-25780543 Msa0541740:CDS 45.0%
TGCTCATACCAAAGCTGGAT+GGG + chr4_1:25780550-25780569 Msa0541740:CDS 45.0%
CATATCTCATCTCGTCTCAG+GGG + chr4_1:25780607-25780626 Msa0541740:intron 45.0%
AAGGACAGTGCCAAAGATAG+AGG + chr4_1:25780901-25780920 Msa0541740:CDS 45.0%
CCATGGCATTCCTCTATCTT+TGG - chr4_1:25780914-25780933 None:intergenic 45.0%
CCAAAGATAGAGGAATGCCA+TGG + chr4_1:25780911-25780930 Msa0541740:CDS 45.0%
AAGATAGAGGAATGCCATGG+TGG + chr4_1:25780914-25780933 Msa0541740:CDS 45.0%
AGATAGAGGAATGCCATGGT+GGG + chr4_1:25780915-25780934 Msa0541740:CDS 45.0%
! GTTCTAAACTTAGCCCACCA+TGG - chr4_1:25780931-25780950 None:intergenic 45.0%
TTTCCAATGCAGCAATTGGG+TGG - chr4_1:25781237-25781256 None:intergenic 45.0%
ACCCAATTGCTGCATTGGAA+AGG + chr4_1:25781236-25781255 Msa0541740:three_prime_UTR 45.0%
!! ACTGACTGGTTCGACTCGTT+CGG - chr4_1:25777472-25777491 None:intergenic 50.0%
ACCCGGTTACCAACAGTGAT+AGG + chr4_1:25778333-25778352 Msa0541740:CDS 50.0%
CGGTTACCAACAGTGATAGG+AGG + chr4_1:25778336-25778355 Msa0541740:CDS 50.0%
AGCACAATGAGAGCAGTCCA+AGG + chr4_1:25778594-25778613 Msa0541740:CDS 50.0%
CTGTTCTGTCCTTTCTCAGG+TGG + chr4_1:25778984-25779003 Msa0541740:intron 50.0%
GTTCTGTCCTTTCTCAGGTG+GGG + chr4_1:25778986-25779005 Msa0541740:intron 50.0%
GCCTAGAGCAAGAAAGAAGG+AGG + chr4_1:25779187-25779206 Msa0541740:intron 50.0%
GCACATCTATTGACAGCGAG+TGG + chr4_1:25779393-25779412 Msa0541740:CDS 50.0%
CGAGTGGAGCATACAAACAC+CGG + chr4_1:25779409-25779428 Msa0541740:CDS 50.0%
CATTTCTTCCGCTCCTTGGT+TGG + chr4_1:25779476-25779495 Msa0541740:intron 50.0%
CTCTTGACACATGTTGGTGC+AGG + chr4_1:25779572-25779591 Msa0541740:intron 50.0%
GGTGCTCCTACATTTGATGC+TGG + chr4_1:25779622-25779641 Msa0541740:CDS 50.0%
GAGTGGCCAGCATCAAATGT+AGG - chr4_1:25779631-25779650 None:intergenic 50.0%
! GGCCTTTTCGGAACACTAAC+CGG + chr4_1:25779916-25779935 Msa0541740:CDS 50.0%
GGGCAACACCAGTGATAAAG+AGG - chr4_1:25780466-25780485 None:intergenic 50.0%
GGTATGAGCAGGACCATGAA+AGG - chr4_1:25780540-25780559 None:intergenic 50.0%
! CATCCAGCTTTGGTATGAGC+AGG - chr4_1:25780551-25780570 None:intergenic 50.0%
CTGCTCATACCAAAGCTGGA+TGG + chr4_1:25780549-25780568 Msa0541740:CDS 50.0%
GAAACTCACCCATCCAGCTT+TGG - chr4_1:25780561-25780580 None:intergenic 50.0%
TGTCCACCCAATTGCTGCAT+TGG + chr4_1:25781231-25781250 Msa0541740:three_prime_UTR 50.0%
!! AGTGGTGGGTCTCCCAAAAG+AGG + chr4_1:25778153-25778172 Msa0541740:intron 55.0%
CACAAGTCCCCACCTGAGAA+AGG - chr4_1:25778996-25779015 None:intergenic 55.0%
TGGAGCATACAAACACCGGC+CGG + chr4_1:25779413-25779432 Msa0541740:CDS 55.0%
!! TAGGAGCACCCCACTCAAGA+GGG - chr4_1:25779612-25779631 None:intergenic 55.0%
CATGTCCTGAGCCGTGGTAT+CGG + chr4_1:25779865-25779884 Msa0541740:CDS 55.0%
TTCCCTGCCAACCGATACCA+CGG - chr4_1:25779879-25779898 None:intergenic 55.0%
!! GGTATCGGTTGGCAGGGAAT+TGG + chr4_1:25779880-25779899 Msa0541740:CDS 55.0%
CTCCTAGGAAGCAACCGTGT+TGG + chr4_1:25780049-25780068 Msa0541740:CDS 55.0%
TGCCAACACGGTTGCTTCCT+AGG - chr4_1:25780054-25780073 None:intergenic 55.0%
TAACCCTTCGGCTGCCAACA+CGG - chr4_1:25780066-25780085 None:intergenic 55.0%
GGTCCTGCTCATACCAAAGC+TGG + chr4_1:25780545-25780564 Msa0541740:CDS 55.0%
GCACCCCACTCAAGAGGGTA+TGG - chr4_1:25779607-25779626 None:intergenic 60.0%
!! GTAGGAGCACCCCACTCAAG+AGG - chr4_1:25779613-25779632 None:intergenic 60.0%
!! TCCTGAGCCGTGGTATCGGT+TGG + chr4_1:25779869-25779888 Msa0541740:CDS 60.0%
!! AGCCGTGGTATCGGTTGGCA+GGG + chr4_1:25779874-25779893 Msa0541740:CDS 60.0%
! CAACCGTGTTGGCAGCCGAA+GGG + chr4_1:25780060-25780079 Msa0541740:CDS 60.0%
GACATGAGCAGGCGGTGGTG+TGG - chr4_1:25779851-25779870 None:intergenic 65.0%
CTCAGGACATGAGCAGGCGG+TGG - chr4_1:25779856-25779875 None:intergenic 65.0%
CGGCTCAGGACATGAGCAGG+CGG - chr4_1:25779859-25779878 None:intergenic 65.0%
CCACGGCTCAGGACATGAGC+AGG - chr4_1:25779862-25779881 None:intergenic 65.0%
CCTGCTCATGTCCTGAGCCG+TGG + chr4_1:25779859-25779878 Msa0541740:CDS 65.0%
GCCAACCGATACCACGGCTC+AGG - chr4_1:25779873-25779892 None:intergenic 65.0%
!! GAGCCGTGGTATCGGTTGGC+AGG + chr4_1:25779873-25779892 Msa0541740:CDS 65.0%
! GCAACCGTGTTGGCAGCCGA+AGG + chr4_1:25780059-25780078 Msa0541740:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 25776808 25781309 25776808 ID=Msa0541740;Name=Msa0541740
chr4_1 mRNA 25776808 25781309 25776808 ID=Msa0541740-mRNA-1;Parent=Msa0541740;Name=Msa0541740-mRNA-1;_AED=0.17;_eAED=0.17;_QI=205|1|1|1|1|1|13|283|524
chr4_1 exon 25776808 25777103 25776808 ID=Msa0541740-mRNA-1:exon:6955;Parent=Msa0541740-mRNA-1
chr4_1 exon 25777203 25777300 25777203 ID=Msa0541740-mRNA-1:exon:6956;Parent=Msa0541740-mRNA-1
chr4_1 exon 25778258 25778434 25778258 ID=Msa0541740-mRNA-1:exon:6957;Parent=Msa0541740-mRNA-1
chr4_1 exon 25778585 25778685 25778585 ID=Msa0541740-mRNA-1:exon:6958;Parent=Msa0541740-mRNA-1
chr4_1 exon 25778820 25778895 25778820 ID=Msa0541740-mRNA-1:exon:6959;Parent=Msa0541740-mRNA-1
chr4_1 exon 25779003 25779062 25779003 ID=Msa0541740-mRNA-1:exon:6960;Parent=Msa0541740-mRNA-1
chr4_1 exon 25779309 25779493 25779309 ID=Msa0541740-mRNA-1:exon:6961;Parent=Msa0541740-mRNA-1
chr4_1 exon 25779594 25779690 25779594 ID=Msa0541740-mRNA-1:exon:6962;Parent=Msa0541740-mRNA-1
chr4_1 exon 25779808 25779953 25779808 ID=Msa0541740-mRNA-1:exon:6963;Parent=Msa0541740-mRNA-1
chr4_1 exon 25780036 25780127 25780036 ID=Msa0541740-mRNA-1:exon:6964;Parent=Msa0541740-mRNA-1
chr4_1 exon 25780237 25780314 25780237 ID=Msa0541740-mRNA-1:exon:6965;Parent=Msa0541740-mRNA-1
chr4_1 exon 25780411 25780571 25780411 ID=Msa0541740-mRNA-1:exon:6966;Parent=Msa0541740-mRNA-1
chr4_1 exon 25780814 25781309 25780814 ID=Msa0541740-mRNA-1:exon:6967;Parent=Msa0541740-mRNA-1
chr4_1 five_prime_UTR 25776808 25777012 25776808 ID=Msa0541740-mRNA-1:five_prime_utr;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25777013 25777103 25777013 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25777203 25777300 25777203 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25778258 25778434 25778258 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25778585 25778685 25778585 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25778820 25778895 25778820 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25779003 25779062 25779003 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25779309 25779493 25779309 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25779594 25779690 25779594 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25779808 25779953 25779808 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25780036 25780127 25780036 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25780237 25780314 25780237 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25780411 25780571 25780411 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 CDS 25780814 25781026 25780814 ID=Msa0541740-mRNA-1:cds;Parent=Msa0541740-mRNA-1
chr4_1 three_prime_UTR 25781027 25781309 25781027 ID=Msa0541740-mRNA-1:three_prime_utr;Parent=Msa0541740-mRNA-1
Gene Sequence

>Msa0541740

ATGGCAGCTATAAAGCCAGAAGAGATAAGTCATTCACCAATGGATCAACTTCAGGGTTTAGAGTATTGTATAGATTCAAATCCATCTTGGGTGGAGACAATACTTCTTGGTTTTCAACATTATATTTTGGCATTAGGAACTGCAGTTATGATTCCTTCATTTCTTGTTCCTTCAATGGGTGGAAATGATGATGATAAAGTAAGGGTGGTACAAACTCTACTTTTTGTTGAAGGAATTAATACACTTTTGCAAACACTGTTTGGAACCCGGTTACCAACAGTGATAGGAGGATCATATGCATTCATGGTCCCCATTGTATCCATTATTCGTGACCCTTCTTTTGCAATGATAGATGACCCACAATTGAGGTTTCTTAGCACAATGAGAGCAGTCCAAGGTGCACTAATTGTAGCATCCAGCATACAAATTATTTTGGGATTTAGTCAAATATGGGCTATTTGTTCTAGATTTTTCAGCCCACTTGGAATGGTTCCAGTAATTACATTAGTTGGTTTTGGATTATTTGACAGAGGTTTCCCTATGGTGGGGACTTGTGTTGAAATTGGAATTCCCATGCTAATCTTGTTTGTAGTGTTCTCTCAGTACTTGAAAAATTTTCAGACAAGACAAGTACCGATACTAGAGAGATTTGCTCTACTCATAACAACCACAGTGATATGGGCATATGCACATCTATTGACAGCGAGTGGAGCATACAAACACCGGCCGGATGTAACTCAACATAGTTGTAGGACAGACAGGGCTAATCTCATTTCTTCCGCTCCTTGGATAAAGATTCCATACCCTCTTGAGTGGGGTGCTCCTACATTTGATGCTGGCCACTCTTTTGGAATGATGGCTGCTGTTTTAGTCTCATTAGTTGAGTCAACTGGAGCATTCAAAGCTGCATCGCGTCTAGCAAGTGCCACACCACCGCCTGCTCATGTCCTGAGCCGTGGTATCGGTTGGCAGGGAATTGGAATTTTGCTGAATGGCCTTTTCGGAACACTAACCGGTTCAACAGTTTCTGTAGAGAATGTAGGACTCCTAGGAAGCAACCGTGTTGGCAGCCGAAGGGTTATTCAAGTTTCTGCTGGATTTATGATATTCTTTGCAATGTTAGGTAAATTTGGAGCTTTATTTGCATCAATACCATTCCCTATTTTTGCTGCTATATACTGTGTTTTGTTTGGTCTTGTAGCTTCTGTAGGGCTATCATTTTTGCAATTCACCAACATGAATTCAATGAGGAACCTCTTTATCACTGGTGTTGCCCTTTTCTTAGGCTTGTCTATTCCTGAATATTTCAGAGAATACACTATCAGGGCCTTTCATGGTCCTGCTCATACCAAAGCTGGATGGTTCAATGACTTCCTGAATACCATCTTCTATTCTTCACCAACTGTTGCATTGATTATTGCTGTGTTCTTGGACAATACTCTTGACTATAAGGACAGTGCCAAAGATAGAGGAATGCCATGGTGGGCTAAGTTTAGAACATTTAAAGCAGATAGCAGAAATGAAGAGTTCTACTCTCTTCCTTTCAATCTCAACCGCTTCTTTCCTCCATCATAG

Protein sequence

>Msa0541740

MAAIKPEEISHSPMDQLQGLEYCIDSNPSWVETILLGFQHYILALGTAVMIPSFLVPSMGGNDDDKVRVVQTLLFVEGINTLLQTLFGTRLPTVIGGSYAFMVPIVSIIRDPSFAMIDDPQLRFLSTMRAVQGALIVASSIQIILGFSQIWAICSRFFSPLGMVPVITLVGFGLFDRGFPMVGTCVEIGIPMLILFVVFSQYLKNFQTRQVPILERFALLITTTVIWAYAHLLTASGAYKHRPDVTQHSCRTDRANLISSAPWIKIPYPLEWGAPTFDAGHSFGMMAAVLVSLVESTGAFKAASRLASATPPPAHVLSRGIGWQGIGILLNGLFGTLTGSTVSVENVGLLGSNRVGSRRVIQVSAGFMIFFAMLGKFGALFASIPFPIFAAIYCVLFGLVASVGLSFLQFTNMNSMRNLFITGVALFLGLSIPEYFREYTIRAFHGPAHTKAGWFNDFLNTIFYSSPTVALIIAVFLDNTLDYKDSAKDRGMPWWAKFRTFKADSRNEEFYSLPFNLNRFFPPS*