Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127270 | XP_013468967.1 | 96.237 | 186 | 4 | 2 | 1 | 185 | 1 | 184 | 3.18e-102 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127270 | sp|P26569|H12_ARATH | 68.085 | 94 | 29 | 1 | 24 | 117 | 61 | 153 | 6.14e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127270 | A0A072VLX5 | 96.237 | 186 | 4 | 2 | 1 | 185 | 1 | 184 | 1.52e-102 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0127270 | 0.809132 | 2.200905e-50 | -8.615850e-47 |
| Msa0030070 | Msa0127270 | 0.832547 | 8.881371e-56 | -8.615850e-47 |
| Msa0032230 | Msa0127270 | 0.964223 | 4.677083e-123 | -8.615850e-47 |
| Msa0050530 | Msa0127270 | 0.834550 | 2.809137e-56 | -8.615850e-47 |
| Msa0093210 | Msa0127270 | 0.843512 | 1.338756e-58 | -8.615850e-47 |
| Msa0100600 | Msa0127270 | 0.830111 | 3.528885e-55 | -8.615850e-47 |
| Msa0100890 | Msa0127270 | 0.816732 | 4.751289e-52 | -8.615850e-47 |
| Msa0125590 | Msa0127270 | 0.850295 | 1.862838e-60 | -8.615850e-47 |
| Msa0127270 | Msa0168380 | 0.805598 | 1.235533e-49 | -8.615850e-47 |
| Msa0127270 | Msa0170070 | 0.800310 | 1.530088e-48 | -8.615850e-47 |
| Msa0127270 | Msa0172510 | 0.830293 | 3.186037e-55 | -8.615850e-47 |
| Msa0127270 | Msa0180100 | -0.844381 | 7.829105e-59 | -8.615850e-47 |
| Msa0127270 | Msa0184510 | -0.818647 | 1.757486e-52 | -8.615850e-47 |
| Msa0127270 | Msa0320250 | 0.807966 | 3.904914e-50 | -8.615850e-47 |
| Msa0127270 | Msa0320270 | 0.803230 | 3.849500e-49 | -8.615850e-47 |
| Msa0127270 | Msa0320290 | 0.818060 | 2.386817e-52 | -8.615850e-47 |
| Msa0127270 | Msa0364680 | 0.823278 | 1.509467e-53 | -8.615850e-47 |
| Msa0127270 | Msa0382230 | 0.828467 | 8.845664e-55 | -8.615850e-47 |
| Msa0127270 | Msa0433760 | 0.819214 | 1.306219e-52 | -8.615850e-47 |
| Msa0127270 | Msa0477630 | 0.824930 | 6.182161e-54 | -8.615850e-47 |
| Msa0127270 | Msa0503990 | 0.820879 | 5.432715e-53 | -8.615850e-47 |
| Msa0127270 | Msa0506540 | 0.822403 | 2.413611e-53 | -8.615850e-47 |
| Msa0127270 | Msa0514020 | 0.806925 | 6.490352e-50 | -8.615850e-47 |
| Msa0127270 | Msa0520680 | 0.833636 | 4.758134e-56 | -8.615850e-47 |
| Msa0127270 | Msa0527850 | 0.804033 | 2.622844e-49 | -8.615850e-47 |
| Msa0127270 | Msa0541740 | 0.814897 | 1.219028e-51 | -8.615850e-47 |
| Msa0127270 | Msa0544410 | 0.838364 | 3.004931e-57 | -8.615850e-47 |
| Msa0127270 | Msa0544430 | 0.830423 | 2.961001e-55 | -8.615850e-47 |
| Msa0127270 | Msa0572830 | 0.811795 | 5.854663e-51 | -8.615850e-47 |
| Msa0127270 | Msa0582460 | 0.800769 | 1.233669e-48 | -8.615850e-47 |
| Msa0127270 | Msa0584530 | 0.803226 | 3.856910e-49 | -8.615850e-47 |
| Msa0127270 | Msa0586200 | 0.808922 | 2.441047e-50 | -8.615850e-47 |
| Msa0127270 | Msa0640800 | 0.838126 | 3.460493e-57 | -8.615850e-47 |
| Msa0127270 | Msa0657210 | 0.808866 | 2.509616e-50 | -8.615850e-47 |
| Msa0127270 | Msa0701250 | 0.812584 | 3.938414e-51 | -8.615850e-47 |
| Msa0127270 | Msa0720280 | 0.812387 | 4.349427e-51 | -8.615850e-47 |
| Msa0127270 | Msa0803140 | 0.807225 | 5.607365e-50 | -8.615850e-47 |
| Msa0127270 | Msa0846900 | 0.802687 | 4.984133e-49 | -8.615850e-47 |
| Msa0127270 | Msa0861440 | 0.822844 | 1.905402e-53 | -8.615850e-47 |
| Msa0127270 | Msa0880280 | 0.853831 | 1.841748e-61 | -8.615850e-47 |
| Msa0127270 | Msa0926310 | 0.825472 | 4.601353e-54 | -8.615850e-47 |
| Msa0127270 | Msa1000780 | 0.847999 | 8.104611e-60 | -8.615850e-47 |
| Msa0127270 | Msa1118770 | -0.806090 | 9.737368e-50 | -8.615850e-47 |
| Msa0127270 | Msa1188790 | 0.809571 | 1.771717e-50 | -8.615850e-47 |
| Msa0127270 | Msa1219640 | 0.849469 | 3.170334e-60 | -8.615850e-47 |
| Msa0127270 | Msa1266620 | 0.845952 | 2.945849e-59 | -8.615850e-47 |
| Msa0127270 | Msa1267150 | 0.846868 | 1.657416e-59 | -8.615850e-47 |
| Msa0127270 | Msa1267930 | 0.812162 | 4.870675e-51 | -8.615850e-47 |
| Msa0127270 | Msa1293610 | 0.813511 | 2.466693e-51 | -8.615850e-47 |
| Msa0127270 | Msa1297220 | -0.805364 | 1.383735e-49 | -8.615850e-47 |
| Msa0127270 | Msa1299500 | 0.802046 | 6.755675e-49 | -8.615850e-47 |
| Msa0127270 | Msa1323260 | -0.810221 | 1.283703e-50 | -8.615850e-47 |
| Msa0127270 | Msa1333650 | 0.846681 | 1.864172e-59 | -8.615850e-47 |
| Msa0127270 | Msa1339230 | 0.866186 | 3.427169e-65 | -8.615850e-47 |
| Msa0127270 | Msa1343450 | -0.812192 | 4.796892e-51 | -8.615850e-47 |
| Msa0127270 | Msa1381470 | 0.811536 | 6.667106e-51 | -8.615850e-47 |
| Msa0127270 | Msa1399190 | 0.826710 | 2.336084e-54 | -8.615850e-47 |
| Msa0127270 | Msa1428690 | 0.827329 | 1.661650e-54 | -8.615850e-47 |
| Msa0127270 | Msa1435100 | 0.823071 | 1.687487e-53 | -8.615850e-47 |
| Msa0127270 | Msa1439730 | 0.839492 | 1.534158e-57 | -8.615850e-47 |
| Msa0127270 | Msa1444930 | 0.828823 | 7.256892e-55 | -8.615850e-47 |
| Msa0127270 | Msa1461260 | 0.837584 | 4.768746e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127270 | MtrunA17_Chr1g0190561 | 96.237 | 186 | 4 | 2 | 1 | 185 | 1 | 184 | 2.92e-106 | 302 |
| Msa0127270 | MtrunA17_Chr1g0184561 | 69.880 | 83 | 25 | 0 | 12 | 94 | 50 | 132 | 5.78e-27 | 102 |
| Msa0127270 | MtrunA17_Chr1g0184671 | 64.865 | 111 | 37 | 2 | 24 | 132 | 9 | 119 | 1.33e-26 | 100 |
| Msa0127270 | MtrunA17_Chr1g0184661 | 69.880 | 83 | 25 | 0 | 12 | 94 | 50 | 132 | 1.46e-26 | 101 |
| Msa0127270 | MtrunA17_Chr7g0260771 | 61.644 | 73 | 28 | 0 | 19 | 91 | 56 | 128 | 8.12e-26 | 100 |
| Msa0127270 | MtrunA17_Chr5g0405221 | 46.316 | 95 | 39 | 3 | 1 | 94 | 22 | 105 | 6.49e-18 | 76.6 |
| Msa0127270 | MtrunA17_Chr8g0372961 | 69.048 | 42 | 13 | 0 | 12 | 53 | 49 | 90 | 1.79e-13 | 63.2 |
| Msa0127270 | MtrunA17_Chr3g0110481 | 42.857 | 70 | 40 | 0 | 20 | 89 | 8 | 77 | 5.88e-13 | 63.9 |
| Msa0127270 | MtrunA17_Chr6g0482691 | 44.444 | 72 | 37 | 1 | 23 | 91 | 40 | 111 | 1.32e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127270 | AT2G30620.2 | 67.708 | 96 | 30 | 1 | 24 | 119 | 61 | 155 | 1.78e-32 | 115 |
| Msa0127270 | AT2G30620.1 | 68.085 | 94 | 29 | 1 | 24 | 117 | 61 | 153 | 6.24e-32 | 116 |
| Msa0127270 | AT1G06760.1 | 77.941 | 68 | 15 | 0 | 24 | 91 | 61 | 128 | 1.01e-23 | 94.7 |
| Msa0127270 | AT2G18050.1 | 44.094 | 127 | 62 | 3 | 14 | 131 | 8 | 134 | 2.65e-21 | 85.9 |
| Msa0127270 | AT2G18050.2 | 39.024 | 123 | 70 | 3 | 31 | 148 | 1 | 123 | 8.24e-17 | 73.6 |
Find 54 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGCTTCGCCGCTGCTTT+TGG | 0.203938 | 1_3:+56524628 | None:intergenic |
| TTTATTATTATAATATTATT+AGG | 0.230522 | 1_3:-56524404 | Msa0127270:three_prime_UTR |
| TTTGGCTTTGCCGCAGCTTT+CGG | 0.250457 | 1_3:+56524646 | None:intergenic |
| TTTGCTGTAAATTCTTTGAT+AGG | 0.309454 | 1_3:-56524373 | Msa0127270:three_prime_UTR |
| CCCTTAACACTCTTCGCTTT+CGG | 0.311339 | 1_3:+56524592 | None:intergenic |
| TTCACAGCAGCTTTCGCTTT+CGG | 0.315371 | 1_3:+56524670 | None:intergenic |
| CTGAAGAAATCTGTGGCTTC+TGG | 0.328322 | 1_3:-56524826 | Msa0127270:CDS |
| AAACAGAAAACTAATTCATT+AGG | 0.336989 | 1_3:+56524315 | None:intergenic |
| CTTGGTCTGAGCAGCGGCGG+TGG | 0.350352 | 1_3:+56525129 | None:intergenic |
| TTCGGCTTCACAACAGCTTT+AGG | 0.372527 | 1_3:+56524610 | None:intergenic |
| TTAGTTGCAGCCTTAGCGGC+TGG | 0.381676 | 1_3:+56524694 | None:intergenic |
| ACCGGAGTCTTAACACTCTT+CGG | 0.394389 | 1_3:+56524526 | None:intergenic |
| TTCTTCGCCGCTTTCTTCAC+AGG | 0.416978 | 1_3:+56524565 | None:intergenic |
| AGAATGAGTTTGCGGAATGT+TGG | 0.442341 | 1_3:+56524856 | None:intergenic |
| GGAGCAGTAGCGGCCTTCAC+CGG | 0.448419 | 1_3:+56524745 | None:intergenic |
| GATGAAGAAGAATGAGTTTG+CGG | 0.452593 | 1_3:+56524848 | None:intergenic |
| GTGAGTTTGAAAGAAAGAAC+TGG | 0.455638 | 1_3:-56524934 | Msa0127270:CDS |
| CACTTCTTAGCTTTCTTCAC+CGG | 0.455761 | 1_3:+56524508 | None:intergenic |
| CCGAAAGCGAAGAGTGTTAA+GGG | 0.457605 | 1_3:-56524592 | Msa0127270:CDS |
| GCCGAAAGCGAAGAGTGTTA+AGG | 0.460757 | 1_3:-56524593 | Msa0127270:CDS |
| CGCTACTGCTCCTGCTAAGA+AGG | 0.467466 | 1_3:-56524734 | Msa0127270:CDS |
| CATGGTTGAGACTTGAGATT+CGG | 0.468277 | 1_3:+56525156 | None:intergenic |
| CGGCTTAGTTGCAGCCTTAG+CGG | 0.476251 | 1_3:+56524690 | None:intergenic |
| ACAGCCTTAGCCTTCTTAGC+AGG | 0.476334 | 1_3:+56524724 | None:intergenic |
| AACTCTTTCTCTCTCTAAAA+CGG | 0.479913 | 1_3:-56525199 | Msa0127270:five_prime_UTR |
| TTGGTCTGAGCAGCGGCGGT+GGG | 0.488362 | 1_3:+56525130 | None:intergenic |
| TAGTGATGTGTGAAATTTGA+GGG | 0.496199 | 1_3:-56524456 | Msa0127270:three_prime_UTR |
| GTTATTACCTCAGCGTAAGT+AGG | 0.507761 | 1_3:+56525061 | None:intergenic |
| GGCGAAAACTGCTCCGGTGA+AGG | 0.508511 | 1_3:-56524758 | Msa0127270:CDS |
| TGTGAAGAAAGCGGCGAAGA+AGG | 0.511913 | 1_3:-56524563 | Msa0127270:CDS |
| AGCAGCGGCGGTGGGAGACA+TGG | 0.520541 | 1_3:+56525138 | None:intergenic |
| TGAATTTCGTTATCGCGTGT+TGG | 0.523300 | 1_3:+56524905 | None:intergenic |
| TGTTACGAAGCCAGCCGCTA+AGG | 0.527612 | 1_3:-56524704 | Msa0127270:CDS |
| CTTCAAAATCGCTCCGGCAG+CGG | 0.533005 | 1_3:-56524779 | Msa0127270:CDS |
| ATTCATCGAAGAGAAGCATA+AGG | 0.536890 | 1_3:-56524887 | Msa0127270:CDS |
| TGCGGCAAAGCCAAAAGCAG+CGG | 0.551299 | 1_3:-56524638 | Msa0127270:CDS |
| TGCTCCTGCTAAGAAGGCTA+AGG | 0.552889 | 1_3:-56524728 | Msa0127270:CDS |
| AAACTCCTTCAAAATCGCTC+CGG | 0.553204 | 1_3:-56524785 | Msa0127270:CDS |
| GAGAGGCTTCTTTGCTGCAG+CGG | 0.555043 | 1_3:+56525090 | None:intergenic |
| ATTATTATAATATTATTAGG+AGG | 0.555644 | 1_3:-56524401 | Msa0127270:three_prime_UTR |
| GGGCTTGGTCTGAGCAGCGG+CGG | 0.555862 | 1_3:+56525126 | None:intergenic |
| GGCAGCGGCGAAAACTGCTC+CGG | 0.555880 | 1_3:-56524764 | Msa0127270:CDS |
| AAAATTAGGGTTTAATTTGG+GGG | 0.564924 | 1_3:-56524483 | Msa0127270:three_prime_UTR |
| CTTGGGCTTGGTCTGAGCAG+CGG | 0.578998 | 1_3:+56525123 | None:intergenic |
| TCTTCATCTGAAGAAATCTG+TGG | 0.580993 | 1_3:-56524833 | Msa0127270:CDS |
| TGCTGTGAAGCCGAAAGCTG+CGG | 0.585204 | 1_3:-56524656 | Msa0127270:CDS |
| GGCTTCTGGCAAGCTCGTGA+AGG | 0.588674 | 1_3:-56524812 | Msa0127270:CDS |
| GCCGAAGAGTGTTAAGACTC+CGG | 0.591306 | 1_3:-56524527 | Msa0127270:CDS |
| TTAGTGATGTGTGAAATTTG+AGG | 0.614228 | 1_3:-56524457 | Msa0127270:three_prime_UTR |
| CTTCTTAGCAGGAGCAGTAG+CGG | 0.626747 | 1_3:+56524735 | None:intergenic |
| GAAGAAAGCGGCGAAGAAGG+TGG | 0.636706 | 1_3:-56524560 | Msa0127270:CDS |
| CTCTCATCCTACTTACGCTG+AGG | 0.643185 | 1_3:-56525068 | Msa0127270:intron |
| GCGTAAGTAGGATGAGAGAG+AGG | 0.655352 | 1_3:+56525073 | None:intergenic |
| GGGTACGCCTGTGAAGAAAG+CGG | 0.711847 | 1_3:-56524572 | Msa0127270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTATTATAATATTATT+AGG | - | chr1_3:56525145-56525164 | Msa0127270:exon | 0.0% |
| !! | TTTATTATTATAATATTATT+AGG | - | chr1_3:56525145-56525164 | Msa0127270:exon | 0.0% |
| !! | ATTATTATAATATTATTAGG+AGG | - | chr1_3:56525148-56525167 | Msa0127270:exon | 10.0% |
| !! | ATTATTATAATATTATTAGG+AGG | - | chr1_3:56525148-56525167 | Msa0127270:exon | 10.0% |
| !!! | AAAAAATTAGGGTTTAATTT+GGG | - | chr1_3:56525064-56525083 | Msa0127270:intron | 15.0% |
| !!! | AAAAAATTAGGGTTTAATTT+GGG | - | chr1_3:56525064-56525083 | Msa0127270:intron | 15.0% |
| !! | GAAAAAATTAGGGTTTAATT+TGG | - | chr1_3:56525063-56525082 | Msa0127270:intron | 20.0% |
| !!! | AAAAATTAGGGTTTAATTTG+GGG | - | chr1_3:56525065-56525084 | Msa0127270:intron | 20.0% |
| !! | AAACAGAAAACTAATTCATT+AGG | + | chr1_3:56525237-56525256 | None:intergenic | 20.0% |
| !! | GAAAAAATTAGGGTTTAATT+TGG | - | chr1_3:56525063-56525082 | Msa0127270:intron | 20.0% |
| !!! | AAAAATTAGGGTTTAATTTG+GGG | - | chr1_3:56525065-56525084 | Msa0127270:intron | 20.0% |
| !! | AAACAGAAAACTAATTCATT+AGG | + | chr1_3:56525237-56525256 | None:intergenic | 20.0% |
| ! | AGCTAAGAAGTGAAAAAATT+AGG | - | chr1_3:56525052-56525071 | Msa0127270:intron | 25.0% |
| ! | GCTAAGAAGTGAAAAAATTA+GGG | - | chr1_3:56525053-56525072 | Msa0127270:intron | 25.0% |
| !!! | AAAATTAGGGTTTAATTTGG+GGG | - | chr1_3:56525066-56525085 | Msa0127270:intron | 25.0% |
| !! | TTTGCTGTAAATTCTTTGAT+AGG | - | chr1_3:56525176-56525195 | Msa0127270:five_prime_UTR | 25.0% |
| ! | AGCTAAGAAGTGAAAAAATT+AGG | - | chr1_3:56525052-56525071 | Msa0127270:intron | 25.0% |
| ! | GCTAAGAAGTGAAAAAATTA+GGG | - | chr1_3:56525053-56525072 | Msa0127270:intron | 25.0% |
| !!! | AAAATTAGGGTTTAATTTGG+GGG | - | chr1_3:56525066-56525085 | Msa0127270:intron | 25.0% |
| !! | TTTGCTGTAAATTCTTTGAT+AGG | - | chr1_3:56525176-56525195 | Msa0127270:five_prime_UTR | 25.0% |
| ! | AACTCTTTCTCTCTCTAAAA+CGG | - | chr1_3:56524350-56524369 | Msa0127270:three_prime_UTR | 30.0% |
| TTAGTGATGTGTGAAATTTG+AGG | - | chr1_3:56525092-56525111 | Msa0127270:CDS | 30.0% | |
| TAGTGATGTGTGAAATTTGA+GGG | - | chr1_3:56525093-56525112 | Msa0127270:CDS | 30.0% | |
| ! | AACTCTTTCTCTCTCTAAAA+CGG | - | chr1_3:56524350-56524369 | Msa0127270:three_prime_UTR | 30.0% |
| TTAGTGATGTGTGAAATTTG+AGG | - | chr1_3:56525092-56525111 | Msa0127270:CDS | 30.0% | |
| TAGTGATGTGTGAAATTTGA+GGG | - | chr1_3:56525093-56525112 | Msa0127270:CDS | 30.0% | |
| GTGAGTTTGAAAGAAAGAAC+TGG | - | chr1_3:56524615-56524634 | Msa0127270:CDS | 35.0% | |
| ! | ATTCATCGAAGAGAAGCATA+AGG | - | chr1_3:56524662-56524681 | Msa0127270:CDS | 35.0% |
| GATGAAGAAGAATGAGTTTG+CGG | + | chr1_3:56524704-56524723 | None:intergenic | 35.0% | |
| TCTTCATCTGAAGAAATCTG+TGG | - | chr1_3:56524716-56524735 | Msa0127270:CDS | 35.0% | |
| GTGAGTTTGAAAGAAAGAAC+TGG | - | chr1_3:56524615-56524634 | Msa0127270:CDS | 35.0% | |
| ! | ATTCATCGAAGAGAAGCATA+AGG | - | chr1_3:56524662-56524681 | Msa0127270:CDS | 35.0% |
| GATGAAGAAGAATGAGTTTG+CGG | + | chr1_3:56524704-56524723 | None:intergenic | 35.0% | |
| TCTTCATCTGAAGAAATCTG+TGG | - | chr1_3:56524716-56524735 | Msa0127270:CDS | 35.0% | |
| CATGGTTGAGACTTGAGATT+CGG | + | chr1_3:56524396-56524415 | None:intergenic | 40.0% | |
| GTTATTACCTCAGCGTAAGT+AGG | + | chr1_3:56524491-56524510 | None:intergenic | 40.0% | |
| TGAATTTCGTTATCGCGTGT+TGG | + | chr1_3:56524647-56524666 | None:intergenic | 40.0% | |
| AGAATGAGTTTGCGGAATGT+TGG | + | chr1_3:56524696-56524715 | None:intergenic | 40.0% | |
| AAACTCCTTCAAAATCGCTC+CGG | - | chr1_3:56524764-56524783 | Msa0127270:CDS | 40.0% | |
| ! | CACTTCTTAGCTTTCTTCAC+CGG | + | chr1_3:56525044-56525063 | None:intergenic | 40.0% |
| CATGGTTGAGACTTGAGATT+CGG | + | chr1_3:56524396-56524415 | None:intergenic | 40.0% | |
| GTTATTACCTCAGCGTAAGT+AGG | + | chr1_3:56524491-56524510 | None:intergenic | 40.0% | |
| TGAATTTCGTTATCGCGTGT+TGG | + | chr1_3:56524647-56524666 | None:intergenic | 40.0% | |
| AGAATGAGTTTGCGGAATGT+TGG | + | chr1_3:56524696-56524715 | None:intergenic | 40.0% | |
| AAACTCCTTCAAAATCGCTC+CGG | - | chr1_3:56524764-56524783 | Msa0127270:CDS | 40.0% | |
| ! | CACTTCTTAGCTTTCTTCAC+CGG | + | chr1_3:56525044-56525063 | None:intergenic | 40.0% |
| ! | TTTGCTGCAGCGGTTTTCTT+TGG | + | chr1_3:56524452-56524471 | None:intergenic | 45.0% |
| CTGAAGAAATCTGTGGCTTC+TGG | - | chr1_3:56524723-56524742 | Msa0127270:CDS | 45.0% | |
| TTCACAGCAGCTTTCGCTTT+CGG | + | chr1_3:56524882-56524901 | None:intergenic | 45.0% | |
| TTCGGCTTCACAACAGCTTT+AGG | + | chr1_3:56524942-56524961 | None:intergenic | 45.0% | |
| CCCTTAACACTCTTCGCTTT+CGG | + | chr1_3:56524960-56524979 | None:intergenic | 45.0% | |
| !! | CCGAAAGCGAAGAGTGTTAA+GGG | - | chr1_3:56524957-56524976 | Msa0127270:intron | 45.0% |
| ACCGGAGTCTTAACACTCTT+CGG | + | chr1_3:56525026-56525045 | None:intergenic | 45.0% | |
| ! | TTTGCTGCAGCGGTTTTCTT+TGG | + | chr1_3:56524452-56524471 | None:intergenic | 45.0% |
| CTGAAGAAATCTGTGGCTTC+TGG | - | chr1_3:56524723-56524742 | Msa0127270:CDS | 45.0% | |
| TTCACAGCAGCTTTCGCTTT+CGG | + | chr1_3:56524882-56524901 | None:intergenic | 45.0% | |
| TTCGGCTTCACAACAGCTTT+AGG | + | chr1_3:56524942-56524961 | None:intergenic | 45.0% | |
| CCCTTAACACTCTTCGCTTT+CGG | + | chr1_3:56524960-56524979 | None:intergenic | 45.0% | |
| !! | CCGAAAGCGAAGAGTGTTAA+GGG | - | chr1_3:56524957-56524976 | Msa0127270:intron | 45.0% |
| ACCGGAGTCTTAACACTCTT+CGG | + | chr1_3:56525026-56525045 | None:intergenic | 45.0% | |
| !!! | GGTTTTCTTTGGCTTGGGCT+TGG | + | chr1_3:56524441-56524460 | None:intergenic | 50.0% |
| !! | GCAGCGGTTTTCTTTGGCTT+GGG | + | chr1_3:56524446-56524465 | None:intergenic | 50.0% |
| ! | TGCAGCGGTTTTCTTTGGCT+TGG | + | chr1_3:56524447-56524466 | None:intergenic | 50.0% |
| GCGTAAGTAGGATGAGAGAG+AGG | + | chr1_3:56524479-56524498 | None:intergenic | 50.0% | |
| CTCTCATCCTACTTACGCTG+AGG | - | chr1_3:56524481-56524500 | Msa0127270:three_prime_UTR | 50.0% | |
| CTTCTTAGCAGGAGCAGTAG+CGG | + | chr1_3:56524817-56524836 | None:intergenic | 50.0% | |
| TGCTCCTGCTAAGAAGGCTA+AGG | - | chr1_3:56524821-56524840 | Msa0127270:CDS | 50.0% | |
| ! | ACAGCCTTAGCCTTCTTAGC+AGG | + | chr1_3:56524828-56524847 | None:intergenic | 50.0% |
| !! | TTTGGCTTTGCCGCAGCTTT+CGG | + | chr1_3:56524906-56524925 | None:intergenic | 50.0% |
| !! | GCCGAAAGCGAAGAGTGTTA+AGG | - | chr1_3:56524956-56524975 | Msa0127270:intron | 50.0% |
| ! | TTCTTCGCCGCTTTCTTCAC+AGG | + | chr1_3:56524987-56525006 | None:intergenic | 50.0% |
| TGTGAAGAAAGCGGCGAAGA+AGG | - | chr1_3:56524986-56525005 | Msa0127270:intron | 50.0% | |
| !! | GCCGAAGAGTGTTAAGACTC+CGG | - | chr1_3:56525022-56525041 | Msa0127270:intron | 50.0% |
| !!! | GGTTTTCTTTGGCTTGGGCT+TGG | + | chr1_3:56524441-56524460 | None:intergenic | 50.0% |
| !! | GCAGCGGTTTTCTTTGGCTT+GGG | + | chr1_3:56524446-56524465 | None:intergenic | 50.0% |
| ! | TGCAGCGGTTTTCTTTGGCT+TGG | + | chr1_3:56524447-56524466 | None:intergenic | 50.0% |
| GCGTAAGTAGGATGAGAGAG+AGG | + | chr1_3:56524479-56524498 | None:intergenic | 50.0% | |
| CTCTCATCCTACTTACGCTG+AGG | - | chr1_3:56524481-56524500 | Msa0127270:three_prime_UTR | 50.0% | |
| CTTCTTAGCAGGAGCAGTAG+CGG | + | chr1_3:56524817-56524836 | None:intergenic | 50.0% | |
| TGCTCCTGCTAAGAAGGCTA+AGG | - | chr1_3:56524821-56524840 | Msa0127270:CDS | 50.0% | |
| ! | ACAGCCTTAGCCTTCTTAGC+AGG | + | chr1_3:56524828-56524847 | None:intergenic | 50.0% |
| !! | TTTGGCTTTGCCGCAGCTTT+CGG | + | chr1_3:56524906-56524925 | None:intergenic | 50.0% |
| !! | GCCGAAAGCGAAGAGTGTTA+AGG | - | chr1_3:56524956-56524975 | Msa0127270:intron | 50.0% |
| ! | TTCTTCGCCGCTTTCTTCAC+AGG | + | chr1_3:56524987-56525006 | None:intergenic | 50.0% |
| TGTGAAGAAAGCGGCGAAGA+AGG | - | chr1_3:56524986-56525005 | Msa0127270:intron | 50.0% | |
| !! | GCCGAAGAGTGTTAAGACTC+CGG | - | chr1_3:56525022-56525041 | Msa0127270:intron | 50.0% |
| GAGAGGCTTCTTTGCTGCAG+CGG | + | chr1_3:56524462-56524481 | None:intergenic | 55.0% | |
| CTTCAAAATCGCTCCGGCAG+CGG | - | chr1_3:56524770-56524789 | Msa0127270:CDS | 55.0% | |
| CGCTACTGCTCCTGCTAAGA+AGG | - | chr1_3:56524815-56524834 | Msa0127270:CDS | 55.0% | |
| TGTTACGAAGCCAGCCGCTA+AGG | - | chr1_3:56524845-56524864 | Msa0127270:CDS | 55.0% | |
| TTAGTTGCAGCCTTAGCGGC+TGG | + | chr1_3:56524858-56524877 | None:intergenic | 55.0% | |
| CGGCTTAGTTGCAGCCTTAG+CGG | + | chr1_3:56524862-56524881 | None:intergenic | 55.0% | |
| TGCTGTGAAGCCGAAAGCTG+CGG | - | chr1_3:56524893-56524912 | Msa0127270:CDS | 55.0% | |
| TGCGGCAAAGCCAAAAGCAG+CGG | - | chr1_3:56524911-56524930 | Msa0127270:CDS | 55.0% | |
| !! | TTAGGCTTCGCCGCTGCTTT+TGG | + | chr1_3:56524924-56524943 | None:intergenic | 55.0% |
| GGGTACGCCTGTGAAGAAAG+CGG | - | chr1_3:56524977-56524996 | Msa0127270:intron | 55.0% | |
| GAAGAAAGCGGCGAAGAAGG+TGG | - | chr1_3:56524989-56525008 | Msa0127270:intron | 55.0% | |
| GAGAGGCTTCTTTGCTGCAG+CGG | + | chr1_3:56524462-56524481 | None:intergenic | 55.0% | |
| CTTCAAAATCGCTCCGGCAG+CGG | - | chr1_3:56524770-56524789 | Msa0127270:CDS | 55.0% | |
| CGCTACTGCTCCTGCTAAGA+AGG | - | chr1_3:56524815-56524834 | Msa0127270:CDS | 55.0% | |
| TGTTACGAAGCCAGCCGCTA+AGG | - | chr1_3:56524845-56524864 | Msa0127270:CDS | 55.0% | |
| TTAGTTGCAGCCTTAGCGGC+TGG | + | chr1_3:56524858-56524877 | None:intergenic | 55.0% | |
| CGGCTTAGTTGCAGCCTTAG+CGG | + | chr1_3:56524862-56524881 | None:intergenic | 55.0% | |
| TGCTGTGAAGCCGAAAGCTG+CGG | - | chr1_3:56524893-56524912 | Msa0127270:CDS | 55.0% | |
| TGCGGCAAAGCCAAAAGCAG+CGG | - | chr1_3:56524911-56524930 | Msa0127270:CDS | 55.0% | |
| !! | TTAGGCTTCGCCGCTGCTTT+TGG | + | chr1_3:56524924-56524943 | None:intergenic | 55.0% |
| GGGTACGCCTGTGAAGAAAG+CGG | - | chr1_3:56524977-56524996 | Msa0127270:intron | 55.0% | |
| GAAGAAAGCGGCGAAGAAGG+TGG | - | chr1_3:56524989-56525008 | Msa0127270:intron | 55.0% | |
| ! | CTTGGGCTTGGTCTGAGCAG+CGG | + | chr1_3:56524429-56524448 | None:intergenic | 60.0% |
| GGCTTCTGGCAAGCTCGTGA+AGG | - | chr1_3:56524737-56524756 | Msa0127270:CDS | 60.0% | |
| ! | CGCTGCCGGAGCGATTTTGA+AGG | + | chr1_3:56524772-56524791 | None:intergenic | 60.0% |
| GGCGAAAACTGCTCCGGTGA+AGG | - | chr1_3:56524791-56524810 | Msa0127270:CDS | 60.0% | |
| ! | CTTGGGCTTGGTCTGAGCAG+CGG | + | chr1_3:56524429-56524448 | None:intergenic | 60.0% |
| GGCTTCTGGCAAGCTCGTGA+AGG | - | chr1_3:56524737-56524756 | Msa0127270:CDS | 60.0% | |
| ! | CGCTGCCGGAGCGATTTTGA+AGG | + | chr1_3:56524772-56524791 | None:intergenic | 60.0% |
| GGCGAAAACTGCTCCGGTGA+AGG | - | chr1_3:56524791-56524810 | Msa0127270:CDS | 60.0% | |
| TTGGTCTGAGCAGCGGCGGT+GGG | + | chr1_3:56524422-56524441 | None:intergenic | 65.0% | |
| ! | GGAGCAGTTTTCGCCGCTGC+CGG | + | chr1_3:56524786-56524805 | None:intergenic | 65.0% |
| GGCAGCGGCGAAAACTGCTC+CGG | - | chr1_3:56524785-56524804 | Msa0127270:CDS | 65.0% | |
| GGAGCAGTAGCGGCCTTCAC+CGG | + | chr1_3:56524807-56524826 | None:intergenic | 65.0% | |
| TTGGTCTGAGCAGCGGCGGT+GGG | + | chr1_3:56524422-56524441 | None:intergenic | 65.0% | |
| ! | GGAGCAGTTTTCGCCGCTGC+CGG | + | chr1_3:56524786-56524805 | None:intergenic | 65.0% |
| GGCAGCGGCGAAAACTGCTC+CGG | - | chr1_3:56524785-56524804 | Msa0127270:CDS | 65.0% | |
| GGAGCAGTAGCGGCCTTCAC+CGG | + | chr1_3:56524807-56524826 | None:intergenic | 65.0% | |
| AGCAGCGGCGGTGGGAGACA+TGG | + | chr1_3:56524414-56524433 | None:intergenic | 70.0% | |
| CTTGGTCTGAGCAGCGGCGG+TGG | + | chr1_3:56524423-56524442 | None:intergenic | 70.0% | |
| ! | GGGCTTGGTCTGAGCAGCGG+CGG | + | chr1_3:56524426-56524445 | None:intergenic | 70.0% |
| AGCAGCGGCGGTGGGAGACA+TGG | + | chr1_3:56524414-56524433 | None:intergenic | 70.0% | |
| CTTGGTCTGAGCAGCGGCGG+TGG | + | chr1_3:56524423-56524442 | None:intergenic | 70.0% | |
| ! | GGGCTTGGTCTGAGCAGCGG+CGG | + | chr1_3:56524426-56524445 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 56524308 | 56525263 | 56524308 | ID=Msa0127270;Name=Msa0127270 |
| chr1_3 | mRNA | 56524308 | 56525263 | 56524308 | ID=Msa0127270-mRNA-1;Parent=Msa0127270;Name=Msa0127270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|1|1|2|199|185 |
| chr1_3 | exon | 56524308 | 56524974 | 56524308 | ID=Msa0127270-mRNA-1:exon:17871;Parent=Msa0127270-mRNA-1 |
| chr1_3 | exon | 56525069 | 56525263 | 56525069 | ID=Msa0127270-mRNA-1:exon:17870;Parent=Msa0127270-mRNA-1 |
| chr1_3 | five_prime_UTR | 56525159 | 56525263 | 56525159 | ID=Msa0127270-mRNA-1:five_prime_utr;Parent=Msa0127270-mRNA-1 |
| chr1_3 | CDS | 56525069 | 56525158 | 56525069 | ID=Msa0127270-mRNA-1:cds;Parent=Msa0127270-mRNA-1 |
| chr1_3 | CDS | 56524507 | 56524974 | 56524507 | ID=Msa0127270-mRNA-1:cds;Parent=Msa0127270-mRNA-1 |
| chr1_3 | three_prime_UTR | 56524308 | 56524506 | 56524308 | ID=Msa0127270-mRNA-1:three_prime_utr;Parent=Msa0127270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
