AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0842210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842210 MtrunA17_Chr5g0412131 91.561 474 34 2 1 468 1 474 0.0 881
Msa0842210 MtrunA17_Chr5g0412101 83.789 475 70 2 1 468 1 475 0.0 822
Msa0842210 MtrunA17_Chr5g0412111 80.994 463 83 3 11 468 4 466 0.0 783
Msa0842210 MtrunA17_Chr5g0426431 40.421 475 253 14 8 460 8 474 1.20e-98 304
Msa0842210 MtrunA17_Chr3g0092641 40.042 477 250 16 8 459 8 473 3.88e-98 303
Msa0842210 MtrunA17_Chr3g0118691 36.632 475 273 11 11 463 14 482 9.29e-95 295
Msa0842210 MtrunA17_Chr3g0118661 37.448 478 260 14 11 461 12 477 2.01e-92 288
Msa0842210 MtrunA17_Chr6g0454191 36.743 479 270 15 11 463 9 480 9.73e-92 286
Msa0842210 MtrunA17_Chr6g0454121 36.025 483 268 12 8 461 6 476 1.28e-91 286
Msa0842210 MtrunA17_Chr6g0454141 35.197 483 271 11 11 463 9 479 3.25e-91 285
Msa0842210 MtrunA17_Chr3g0118771 35.593 472 278 10 11 461 20 486 3.90e-91 285
Msa0842210 MtrunA17_Chr6g0454261 34.016 488 270 11 11 463 9 479 5.05e-91 285
Msa0842210 MtrunA17_Chr6g0454131 36.364 484 265 12 8 461 6 476 5.96e-91 285
Msa0842210 MtrunA17_Chr6g0454291 35.670 485 270 11 9 463 4 476 6.51e-91 284
Msa0842210 MtrunA17_Chr2g0278711 36.100 482 283 13 1 463 1 476 6.67e-91 284
Msa0842210 MtrunA17_Chr7g0217881 36.017 472 264 9 11 463 9 461 1.86e-90 283
Msa0842210 MtrunA17_Chr3g0118671 35.232 474 273 12 12 460 6 470 2.26e-90 283
Msa0842210 MtrunA17_Chr6g0454401 34.244 476 286 10 11 463 9 480 3.81e-90 283
Msa0842210 MtrunA17_Chr3g0118701 35.169 472 278 11 11 460 14 479 1.10e-89 281
Msa0842210 MtrunA17_Chr6g0454331 33.958 480 287 11 9 463 4 478 1.60e-89 281
Msa0842210 MtrunA17_Chr4g0050341 35.892 482 269 13 9 460 16 487 4.07e-89 280
Msa0842210 MtrunA17_Chr3g0118711 35.010 477 278 12 11 463 12 480 2.87e-88 278
Msa0842210 MtrunA17_Chr6g0454181 34.016 488 276 12 8 463 6 479 1.55e-87 276
Msa0842210 MtrunA17_Chr6g0454301 35.639 477 275 12 11 463 262 730 2.28e-87 282
Msa0842210 MtrunA17_Chr6g0454301 40.889 225 130 3 240 461 3 227 1.45e-50 183
Msa0842210 MtrunA17_Chr6g0453961 33.130 492 288 12 2 463 9 489 3.64e-87 275
Msa0842210 MtrunA17_Chr6g0453951 34.172 477 284 13 11 463 56 526 3.86e-87 276
Msa0842210 MtrunA17_Chr6g0454361 35.491 479 277 14 7 460 6 477 4.40e-86 272
Msa0842210 MtrunA17_Chr3g0078841 34.322 472 284 12 11 461 9 475 7.07e-86 271
Msa0842210 MtrunA17_Chr6g0452771 34.864 479 284 11 8 463 6 479 1.65e-85 270
Msa0842210 MtrunA17_Chr8g0359821 33.194 479 284 13 11 463 9 477 2.30e-85 270
Msa0842210 MtrunA17_Chr5g0423981 35.193 466 265 13 8 463 6 444 5.09e-84 266
Msa0842210 MtrunA17_Chr6g0454341 33.542 480 277 12 11 461 9 475 5.20e-84 266
Msa0842210 MtrunA17_Chr8g0336331 33.546 471 290 10 12 463 10 476 7.12e-84 266
Msa0842210 MtrunA17_Chr6g0454201 35.774 478 275 14 11 463 10 480 3.44e-82 262
Msa0842210 MtrunA17_Chr6g0454211 34.711 484 272 12 11 463 296 766 3.48e-82 269
Msa0842210 MtrunA17_Chr6g0454211 35.000 260 129 6 132 382 8 236 3.73e-39 150
Msa0842210 MtrunA17_Chr6g0454151 33.745 486 272 11 11 463 9 477 7.77e-82 261
Msa0842210 MtrunA17_Chr6g0454351 33.054 478 271 13 11 463 11 464 4.58e-81 258
Msa0842210 MtrunA17_Chr3g0118751 33.473 478 251 12 11 461 5 442 1.30e-80 257
Msa0842210 MtrunA17_Chr6g0454321 33.333 462 284 11 12 453 10 467 3.10e-79 259
Msa0842210 MtrunA17_Chr3g0112771 33.761 468 268 14 13 465 13 453 6.39e-76 245
Msa0842210 MtrunA17_Chr3g0112761 34.188 468 270 13 12 465 8 451 7.86e-72 234
Msa0842210 MtrunA17_Chr5g0426401 42.384 302 159 9 173 463 13 310 3.99e-70 225
Msa0842210 MtrunA17_Chr6g0454251 34.739 403 220 12 11 383 6 395 6.21e-69 225
Msa0842210 MtrunA17_Chr4g0032331 33.830 470 267 14 13 465 9 451 2.78e-67 222
Msa0842210 MtrunA17_Chr6g0454271 37.102 283 172 4 187 463 4 286 1.67e-65 213
Msa0842210 MtrunA17_Chr8g0380531 32.854 487 277 17 3 466 1 460 1.28e-62 210
Msa0842210 MtrunA17_Chr3g0118721 37.193 285 166 5 190 463 7 289 8.22e-61 200
Msa0842210 MtrunA17_Chr7g0218821 30.544 478 282 13 9 464 2 451 4.39e-60 203
Msa0842210 MtrunA17_Chr7g0218811 30.323 465 285 12 9 462 12 448 1.05e-59 202
Msa0842210 MtrunA17_Chr7g0218831 30.621 467 278 12 10 462 4 438 1.69e-59 201
Msa0842210 MtrunA17_Chr5g0414331 32.353 476 271 16 12 467 13 457 2.56e-59 201
Msa0842210 MtrunA17_Chr5g0414321 32.353 476 271 17 12 467 11 455 1.09e-58 200
Msa0842210 MtrunA17_Chr7g0250001 31.197 468 274 16 12 460 6 444 2.07e-58 199
Msa0842210 MtrunA17_Chr6g0464881 31.356 472 280 16 7 460 6 451 1.23e-57 197
Msa0842210 MtrunA17_Chr6g0464871 31.568 472 281 16 6 460 17 463 1.47e-57 197
Msa0842210 MtrunA17_Chr6g0464921 31.983 469 282 15 7 460 6 452 3.90e-57 196
Msa0842210 MtrunA17_Chr7g0218841 30.835 467 278 15 10 462 4 439 9.12e-57 194
Msa0842210 MtrunA17_Chr1g0207861 31.250 480 287 14 12 465 8 470 9.41e-56 192
Msa0842210 MtrunA17_Chr8g0377921 31.148 488 277 19 10 463 1 463 1.74e-55 191
Msa0842210 MtrunA17_Chr1g0207981 31.513 476 294 13 12 467 13 476 8.16e-55 190
Msa0842210 MtrunA17_Chr7g0249981 30.271 479 271 15 12 465 25 465 1.17e-54 190
Msa0842210 MtrunA17_Chr8g0366391 30.290 482 301 15 12 467 9 481 1.16e-53 187
Msa0842210 MtrunA17_Chr6g0454221 41.150 226 129 3 240 461 3 228 1.25e-53 182
Msa0842210 MtrunA17_Chr1g0161351 29.577 497 292 15 5 464 23 498 4.13e-53 186
Msa0842210 MtrunA17_Chr3g0121991 30.898 479 292 11 12 463 79 545 7.38e-53 186
Msa0842210 MtrunA17_Chr6g0464841 30.561 481 272 16 7 460 6 451 1.06e-52 184
Msa0842210 MtrunA17_Chr4g0044511 29.532 491 289 15 12 467 40 508 1.33e-52 185
Msa0842210 MtrunA17_Chr5g0401721 29.550 467 286 15 13 452 9 459 2.74e-51 181
Msa0842210 MtrunA17_Chr6g0454171 36.803 269 147 6 200 461 55 307 3.31e-51 176
Msa0842210 MtrunA17_Chr8g0365811 29.979 477 297 15 13 465 496 959 4.47e-51 186
Msa0842210 MtrunA17_Chr8g0365811 28.953 449 279 15 12 433 9 444 1.15e-44 167
Msa0842210 MtrunA17_Chr3g0098111 29.412 476 301 13 12 465 9 471 5.15e-51 180
Msa0842210 MtrunA17_Chr7g0249931 28.632 475 286 17 12 465 40 482 6.13e-50 177
Msa0842210 MtrunA17_Chr6g0464861 30.398 477 279 18 6 460 5 450 8.13e-50 176
Msa0842210 MtrunA17_Chr8g0355011 30.532 357 193 10 115 460 46 358 9.63e-50 174
Msa0842210 MtrunA17_Chr3g0122001 31.526 498 264 17 12 463 486 952 1.16e-49 182
Msa0842210 MtrunA17_Chr3g0122001 29.959 484 291 13 12 463 6 473 1.24e-48 179
Msa0842210 MtrunA17_Chr1g0207971 28.721 477 286 16 12 464 8 454 5.06e-48 171
Msa0842210 MtrunA17_Chr8g0377941 30.977 481 275 17 13 463 8 461 1.20e-47 171
Msa0842210 MtrunA17_Chr7g0265151 31.325 498 273 22 12 463 9 483 4.32e-47 169
Msa0842210 MtrunA17_Chr7g0243631 27.767 497 295 18 12 465 13 488 7.98e-47 169
Msa0842210 MtrunA17_Chr7g0243681 27.992 493 294 18 12 465 11 481 6.05e-46 166
Msa0842210 MtrunA17_Chr8g0347281 29.735 491 278 22 5 460 11 469 7.12e-46 166
Msa0842210 MtrunA17_Chr7g0265041 29.058 499 292 17 9 463 8 488 1.03e-45 166
Msa0842210 MtrunA17_Chr4g0044501 30.041 486 290 17 12 465 10 477 1.33e-45 165
Msa0842210 MtrunA17_Chr1g0179901 28.571 490 300 14 12 463 16 493 1.40e-45 166
Msa0842210 MtrunA17_Chr5g0429711 30.169 474 291 17 14 467 12 465 2.35e-45 164
Msa0842210 MtrunA17_Chr7g0218791 27.922 462 292 11 11 456 4 440 2.53e-45 164
Msa0842210 MtrunA17_Chr4g0053501 28.074 488 296 17 1 460 1 461 3.31e-45 164
Msa0842210 MtrunA17_Chr4g0053321 28.970 466 297 14 13 460 27 476 3.71e-45 164
Msa0842210 MtrunA17_Chr6g0462531 26.915 483 294 14 13 461 5 462 8.57e-45 162
Msa0842210 MtrunA17_Chr1g0207951 29.046 482 279 15 12 464 124 571 1.11e-44 167
Msa0842210 MtrunA17_Chr1g0207951 28.211 475 296 15 12 463 656 1108 1.95e-44 167
Msa0842210 MtrunA17_Chr6g0462571 27.660 470 285 16 13 452 5 449 2.19e-44 162
Msa0842210 MtrunA17_Chr6g0486251 28.601 479 287 18 13 460 7 461 2.34e-44 161
Msa0842210 MtrunA17_Chr6g0486201 28.601 479 287 18 13 460 7 461 2.34e-44 161
Msa0842210 MtrunA17_Chr8g0347271 29.461 482 275 20 5 452 12 462 2.96e-44 161
Msa0842210 MtrunA17_Chr5g0419771 29.495 495 298 17 12 468 36 517 3.23e-44 162
Msa0842210 MtrunA17_Chr5g0431361 28.195 493 288 16 1 465 1 455 3.34e-44 161
Msa0842210 MtrunA17_Chr7g0275511 28.659 492 290 18 4 460 7 472 1.70e-43 159
Msa0842210 MtrunA17_Chr5g0401851 26.559 497 313 14 4 465 6 485 2.26e-43 159
Msa0842210 MtrunA17_Chr4g0011051 27.126 494 303 15 12 461 9 489 3.13e-43 159
Msa0842210 MtrunA17_Chr7g0275681 28.398 493 292 18 10 463 10 480 3.45e-43 159
Msa0842210 MtrunA17_Chr2g0307961 27.869 488 307 13 1 463 1 468 4.63e-43 158
Msa0842210 MtrunA17_Chr6g0459311 27.443 481 290 18 13 460 14 468 7.94e-43 157
Msa0842210 MtrunA17_Chr5g0393591 28.480 467 279 12 12 467 17 439 9.11e-43 157
Msa0842210 MtrunA17_Chr7g0243931 27.902 491 302 14 12 465 17 492 9.15e-43 158
Msa0842210 MtrunA17_Chr5g0431441 27.907 473 295 16 12 463 18 465 1.13e-42 157
Msa0842210 MtrunA17_Chr1g0207831 27.579 475 302 14 13 464 9 464 3.09e-42 156
Msa0842210 MtrunA17_Chr8g0335141 29.175 497 293 19 1 465 1 470 4.17e-42 155
Msa0842210 MtrunA17_Chr6g0454371 40.000 170 100 2 296 463 1 170 7.81e-42 146
Msa0842210 MtrunA17_Chr4g0060511 28.155 515 294 18 1 465 1 489 8.68e-42 155
Msa0842210 MtrunA17_Chr6g0462551 28.118 473 282 16 13 452 5 452 1.97e-41 154
Msa0842210 MtrunA17_Chr8g0335161 27.731 476 299 17 12 460 6 463 2.46e-41 153
Msa0842210 MtrunA17_Chr8g0382021 28.247 485 275 19 17 463 39 488 3.42e-41 153
Msa0842210 MtrunA17_Chr7g0243951 27.328 494 300 18 12 465 11 485 3.51e-41 153
Msa0842210 MtrunA17_Chr5g0448551 26.923 416 283 9 11 420 6 406 4.38e-41 152
Msa0842210 MtrunA17_Chr4g0014061 26.694 487 301 15 13 465 10 474 4.51e-41 153
Msa0842210 MtrunA17_Chr3g0106231 29.046 482 278 17 5 463 11 451 9.39e-41 152
Msa0842210 MtrunA17_Chr6g0463891 28.283 495 292 16 13 465 13 486 1.21e-40 152
Msa0842210 MtrunA17_Chr8g0361371 28.337 487 283 22 13 460 8 467 1.63e-40 151
Msa0842210 MtrunA17_Chr6g0462541 27.749 382 230 11 106 464 106 464 2.71e-40 150
Msa0842210 MtrunA17_Chr7g0265141 26.369 493 302 9 12 461 9 483 2.73e-40 150
Msa0842210 MtrunA17_Chr6g0462521 25.949 474 296 13 13 461 5 448 3.54e-40 150
Msa0842210 MtrunA17_Chr8g0373301 31.414 382 210 17 115 467 112 470 4.11e-40 150
Msa0842210 MtrunA17_Chr5g0442601 27.006 511 297 19 1 463 393 875 4.19e-40 154
Msa0842210 MtrunA17_Chr5g0442601 29.299 314 158 13 115 403 62 336 3.05e-26 112
Msa0842210 MtrunA17_Chr7g0265101 27.800 500 291 20 12 463 9 486 4.79e-40 150
Msa0842210 MtrunA17_Chr7g0243771 26.761 497 296 16 12 465 6 477 7.19e-40 150
Msa0842210 MtrunA17_Chr1g0159551 27.254 477 281 14 17 463 19 459 8.74e-40 149
Msa0842210 MtrunA17_Chr5g0440421 31.548 504 275 25 11 463 9 493 1.59e-39 149
Msa0842210 MtrunA17_Chr7g0243861 26.465 495 304 18 12 465 14 489 4.03e-39 148
Msa0842210 MtrunA17_Chr7g0249961 35.169 236 142 5 240 468 33 264 5.25e-39 142
Msa0842210 MtrunA17_Chr4g0066151 25.806 496 314 15 1 464 7 480 5.60e-39 147
Msa0842210 MtrunA17_Chr1g0207931 35.366 246 144 7 219 452 244 486 6.12e-39 147
Msa0842210 MtrunA17_Chr3g0079731 26.380 489 303 13 13 461 7 478 8.96e-39 146
Msa0842210 MtrunA17_Chr7g0243781 25.852 499 295 17 12 465 9 477 1.10e-38 146
Msa0842210 MtrunA17_Chr5g0431401 27.731 476 287 16 12 465 10 450 2.62e-38 144
Msa0842210 MtrunA17_Chr7g0265111 28.711 512 298 18 1 466 28 518 2.67e-38 146
Msa0842210 MtrunA17_Chr4g0066221 27.651 481 300 15 17 464 16 481 2.69e-38 145
Msa0842210 MtrunA17_Chr7g0243871 26.531 490 300 18 12 465 9 474 2.97e-38 145
Msa0842210 MtrunA17_Chr5g0448521 28.000 500 273 20 13 463 6 467 4.14e-38 144
Msa0842210 MtrunA17_Chr8g0334831 28.770 431 247 18 13 408 7 412 4.58e-38 144
Msa0842210 MtrunA17_Chr7g0243801 26.220 492 305 15 12 465 7 478 4.89e-38 144
Msa0842210 MtrunA17_Chr5g0442541 26.775 493 288 18 12 463 5 465 6.62e-38 144
Msa0842210 MtrunA17_Chr5g0429681 29.622 476 282 21 14 460 45 496 9.06e-38 144
Msa0842210 MtrunA17_Chr7g0265051 26.694 487 311 17 12 463 9 484 9.52e-38 144
Msa0842210 MtrunA17_Chr8g0339461 30.027 373 218 14 115 459 110 467 1.05e-37 143
Msa0842210 MtrunA17_Chr5g0419761 27.088 491 307 16 12 462 9 488 1.43e-37 143
Msa0842210 MtrunA17_Chr8g0334851 30.513 390 224 12 106 467 103 473 2.13e-37 142
Msa0842210 MtrunA17_Chr1g0173121 27.711 498 281 17 4 463 6 462 2.64e-37 142
Msa0842210 MtrunA17_Chr4g0044521 30.164 305 186 9 180 461 164 464 3.47e-37 142
Msa0842210 MtrunA17_Chr4g0066261 27.010 485 299 17 17 464 16 482 5.03e-37 142
Msa0842210 MtrunA17_Chr8g0336651 27.813 471 291 16 12 452 781 1232 6.60e-37 144
Msa0842210 MtrunA17_Chr8g0336651 27.391 460 290 15 12 446 6 446 2.50e-33 134
Msa0842210 MtrunA17_Chr8g0336651 34.361 227 116 7 240 460 572 771 4.86e-30 124
Msa0842210 MtrunA17_Chr6g0454231 32.400 250 129 5 215 461 4 216 6.67e-37 141
Msa0842210 MtrunA17_Chr6g0454231 28.936 235 143 9 11 227 249 477 3.57e-15 77.8
Msa0842210 MtrunA17_Chr5g0442491 27.345 501 282 20 13 463 6 474 7.40e-37 141
Msa0842210 MtrunA17_Chr5g0442581 29.974 387 212 15 115 463 111 476 1.75e-36 141
Msa0842210 MtrunA17_Chr5g0428081 28.893 488 284 16 17 464 16 480 2.74e-36 140
Msa0842210 MtrunA17_Chr4g0044481 28.571 406 243 11 12 405 27 397 3.24e-36 138
Msa0842210 MtrunA17_Chr2g0302961 25.971 489 293 14 12 461 5 463 3.32e-36 139
Msa0842210 MtrunA17_Chr7g0235051 26.160 474 293 14 12 461 11 451 3.46e-36 139
Msa0842210 MtrunA17_Chr8g0336261 43.382 136 76 1 296 430 1 136 3.80e-36 130
Msa0842210 MtrunA17_Chr4g0072771 25.957 470 305 17 12 465 25 467 4.09e-36 139
Msa0842210 MtrunA17_Chr8g0339601 31.939 263 145 8 216 453 66 319 4.73e-36 136
Msa0842210 MtrunA17_Chr8g0369341 27.778 486 295 17 12 464 7 469 5.10e-36 139
Msa0842210 MtrunA17_Chr5g0420801 27.824 478 295 16 12 464 7 459 7.14e-36 138
Msa0842210 MtrunA17_Chr6g0463851 27.525 505 272 19 17 464 16 483 7.39e-36 139
Msa0842210 MtrunA17_Chr2g0294921 26.860 484 301 15 17 464 165 631 8.99e-36 140
Msa0842210 MtrunA17_Chr4g0066201 26.793 474 300 12 17 464 23 475 9.07e-36 138
Msa0842210 MtrunA17_Chr6g0449931 25.941 478 265 20 12 440 6 443 1.54e-35 137
Msa0842210 MtrunA17_Chr8g0336691 27.708 480 294 22 12 460 13 470 1.56e-35 140
Msa0842210 MtrunA17_Chr8g0336691 30.110 362 213 12 124 460 1030 1376 2.98e-35 140
Msa0842210 MtrunA17_Chr8g0336691 27.193 456 283 18 12 452 480 901 1.21e-31 129
Msa0842210 MtrunA17_Chr2g0294931 27.181 493 300 15 13 466 12 484 2.10e-35 137
Msa0842210 MtrunA17_Chr1g0153451 30.894 369 211 15 117 460 111 460 3.45e-35 136
Msa0842210 MtrunA17_Chr7g0232401 28.653 349 200 8 124 440 120 451 3.76e-35 136
Msa0842210 MtrunA17_Chr5g0431421 27.883 477 285 15 12 465 10 450 3.98e-35 135
Msa0842210 MtrunA17_Chr7g0243761 27.743 483 283 18 12 465 11 456 4.85e-35 136
Msa0842210 MtrunA17_Chr4g0066281 26.899 487 281 17 17 464 17 467 1.03e-34 135
Msa0842210 MtrunA17_Chr4g0042891 30.702 342 201 13 142 461 136 463 1.07e-34 135
Msa0842210 MtrunA17_Chr6g0453941 31.562 320 147 9 10 324 9 261 1.75e-34 130
Msa0842210 MtrunA17_Chr2g0329111 27.700 426 239 16 13 399 7 402 2.21e-34 134
Msa0842210 MtrunA17_Chr5g0431371 26.829 492 271 14 12 465 10 450 2.92e-34 133
Msa0842210 MtrunA17_Chr4g0042931 27.423 485 285 18 12 460 7 460 3.11e-34 134
Msa0842210 MtrunA17_Chr5g0416741 25.720 486 314 16 13 465 14 485 3.23e-34 134
Msa0842210 MtrunA17_Chr2g0302991 28.099 363 218 9 123 461 117 460 3.51e-34 133
Msa0842210 MtrunA17_Chr7g0232411 26.625 477 302 16 12 460 6 462 7.30e-34 132
Msa0842210 MtrunA17_Chr6g0463861 26.160 474 303 16 17 461 16 471 9.03e-34 132
Msa0842210 MtrunA17_Chr8g0336741 29.048 420 254 16 12 408 13 411 9.72e-34 132
Msa0842210 MtrunA17_Chr7g0232331 27.211 441 272 15 12 424 6 425 1.03e-33 132
Msa0842210 MtrunA17_Chr4g0072761 26.923 364 234 12 111 465 114 454 1.11e-33 132
Msa0842210 MtrunA17_Chr5g0442561 26.052 499 291 20 12 463 5 472 1.25e-33 132
Msa0842210 MtrunA17_Chr8g0339451 28.689 366 218 14 115 452 102 452 1.65e-33 131
Msa0842210 MtrunA17_Chr8g0339631 28.297 364 219 13 115 452 110 457 1.81e-33 131
Msa0842210 MtrunA17_Chr7g0232391 25.577 477 307 15 12 460 6 462 1.89e-33 131
Msa0842210 MtrunA17_Chr5g0442521 27.390 387 222 16 115 463 110 475 2.33e-33 131
Msa0842210 MtrunA17_Chr7g0232341 27.079 469 283 18 12 445 6 450 5.52e-33 130
Msa0842210 MtrunA17_Chr8g0336731 31.922 307 177 10 128 417 147 438 6.29e-33 130
Msa0842210 MtrunA17_Chr8g0355221 26.542 373 241 12 118 465 124 488 6.50e-33 130
Msa0842210 MtrunA17_Chr8g0339441 37.129 202 105 6 273 452 217 418 8.01e-33 129
Msa0842210 MtrunA17_Chr4g0066171 25.361 485 292 15 17 464 26 477 8.10e-33 130
Msa0842210 MtrunA17_Chr4g0066131 25.051 495 295 15 13 464 14 475 1.34e-32 129
Msa0842210 MtrunA17_Chr5g0432731 29.808 312 176 10 171 460 3 293 2.57e-32 125
Msa0842210 MtrunA17_Chr5g0410941 25.963 493 298 16 13 464 24 490 3.19e-32 128
Msa0842210 MtrunA17_Chr5g0442511 32.014 278 150 9 216 464 227 494 3.19e-32 128
Msa0842210 MtrunA17_Chr8g0374941 31.868 273 158 7 215 460 1143 1414 4.64e-32 130
Msa0842210 MtrunA17_Chr8g0374941 30.888 259 151 8 215 446 205 462 4.96e-27 115
Msa0842210 MtrunA17_Chr8g0374941 29.967 307 176 11 175 445 623 926 3.17e-26 112
Msa0842210 MtrunA17_Chr8g0374901 29.900 301 168 9 195 464 191 479 5.07e-32 127
Msa0842210 MtrunA17_Chr7g0218311 29.866 298 180 8 194 464 189 484 6.96e-32 127
Msa0842210 MtrunA17_Chr1g0165701 23.857 503 324 18 1 465 4 485 2.15e-31 126
Msa0842210 MtrunA17_Chr6g0453981 36.946 203 116 5 132 324 8 208 2.17e-31 120
Msa0842210 MtrunA17_Chr8g0374931 26.392 485 302 16 17 464 16 482 2.22e-31 126
Msa0842210 MtrunA17_Chr8g0374971 30.249 281 162 8 214 464 205 481 3.36e-31 125
Msa0842210 MtrunA17_Chr2g0294941 30.476 315 194 9 117 417 17 320 3.66e-31 123
Msa0842210 MtrunA17_Chr7g0243711 33.761 234 133 6 254 465 85 318 3.69e-31 122
Msa0842210 MtrunA17_Chr8g0334861 29.630 270 152 7 217 460 203 460 2.88e-30 122
Msa0842210 MtrunA17_Chr7g0232311 28.652 356 211 13 130 460 123 460 4.21e-30 122
Msa0842210 MtrunA17_Chr7g0243851 31.852 270 158 8 220 465 177 444 1.08e-29 120
Msa0842210 MtrunA17_Chr7g0243611 31.095 283 169 9 130 405 8 271 2.31e-29 116
Msa0842210 MtrunA17_Chr7g0241781 27.174 460 263 19 1 441 1 407 3.20e-29 119
Msa0842210 MtrunA17_Chr5g0403641 29.431 299 165 11 192 456 209 495 4.88e-29 119
Msa0842210 MtrunA17_Chr8g0370941 24.706 510 297 18 12 463 8 488 8.05e-29 119
Msa0842210 MtrunA17_Chr8g0350881 31.183 279 164 7 215 466 206 483 9.77e-29 118
Msa0842210 MtrunA17_Chr1g0153461 34.300 207 117 5 273 460 3 209 9.96e-29 112
Msa0842210 MtrunA17_Chr5g0431431 32.787 244 140 8 163 400 99 324 1.00e-28 116
Msa0842210 MtrunA17_Chr3g0106251 30.208 288 176 6 191 467 24 297 3.93e-28 114
Msa0842210 MtrunA17_Chr5g0416821 25.000 476 319 17 13 465 15 475 1.37e-27 115
Msa0842210 MtrunA17_Chr6g0482061 25.367 477 299 16 12 451 11 467 2.29e-27 114
Msa0842210 MtrunA17_Chr7g0241801 28.387 465 257 18 1 455 1 399 2.53e-27 113
Msa0842210 MtrunA17_Chr7g0243911 35.859 198 106 6 276 458 24 215 5.56e-27 108
Msa0842210 MtrunA17_Chr7g0243811 34.021 194 116 5 215 403 187 373 2.90e-25 107
Msa0842210 MtrunA17_Chr5g0409591 28.676 272 165 8 218 461 212 482 5.52e-25 107
Msa0842210 MtrunA17_Chr8g0357361 44.604 139 73 4 273 409 117 253 2.23e-24 102
Msa0842210 MtrunA17_Chr8g0367221 26.977 430 246 17 3 399 4 398 4.18e-24 106
Msa0842210 MtrunA17_Chr8g0367221 37.342 158 91 4 276 425 1058 1215 2.27e-20 94.7
Msa0842210 MtrunA17_Chr8g0367221 39.062 128 74 2 276 399 1548 1675 2.64e-20 94.7
Msa0842210 MtrunA17_Chr1g0196851 25.243 412 266 18 12 407 49 434 8.39e-24 103
Msa0842210 MtrunA17_Chr5g0426411 37.572 173 94 6 6 169 6 173 3.30e-23 96.3
Msa0842210 MtrunA17_Chr4g0040691 24.834 451 293 14 12 441 8 433 2.81e-22 99.4
Msa0842210 MtrunA17_Chr8g0337381 39.844 128 70 3 343 465 2 127 5.36e-22 91.7
Msa0842210 MtrunA17_Chr7g0231631 30.315 254 166 7 220 465 11 261 1.70e-21 94.0
Msa0842210 MtrunA17_Chr1g0207881 34.641 153 93 1 319 464 233 385 1.85e-21 95.9
Msa0842210 MtrunA17_Chr4g0040711 24.879 414 269 13 12 408 8 396 1.92e-21 96.7
Msa0842210 MtrunA17_Chr4g0066141 36.076 158 84 4 325 465 196 353 7.07e-21 94.0
Msa0842210 MtrunA17_Chr8g0361411 31.915 188 116 5 218 397 202 385 7.93e-21 94.7
Msa0842210 MtrunA17_Chr4g0069611 25.182 413 249 16 12 399 15 392 1.74e-20 94.0
Msa0842210 MtrunA17_Chr7g0232351 33.516 182 96 6 217 382 206 378 2.11e-20 92.8
Msa0842210 MtrunA17_Chr8g0336321 38.931 131 76 3 271 397 265 395 2.34e-20 93.6
Msa0842210 MtrunA17_Chr6g0454111 36.170 141 85 3 180 316 44 183 2.45e-20 88.6
Msa0842210 MtrunA17_Chr3g0079711 32.065 184 103 6 300 461 3 186 3.00e-20 88.6
Msa0842210 MtrunA17_Chr5g0427571 34.228 149 88 3 252 397 88 229 3.66e-20 90.9
Msa0842210 MtrunA17_Chr6g0464091 25.980 408 259 15 12 399 18 402 3.81e-20 92.8
Msa0842210 MtrunA17_Chr2g0302851 25.750 400 263 14 12 399 16 393 7.08e-20 92.0
Msa0842210 MtrunA17_Chr8g0336251 36.641 131 79 3 271 397 265 395 1.06e-19 91.7
Msa0842210 MtrunA17_Chr4g0029151 24.283 453 267 19 12 430 20 430 1.34e-19 91.3
Msa0842210 MtrunA17_Chr2g0278721 24.086 465 301 18 7 440 511 954 5.65e-19 90.1
Msa0842210 MtrunA17_Chr2g0278721 25.062 403 267 16 12 399 15 397 3.68e-17 84.7
Msa0842210 MtrunA17_Chr7g0250021 26.239 343 211 13 12 339 12 327 8.26e-19 87.4
Msa0842210 MtrunA17_Chr3g0092031 36.508 126 78 2 275 399 5 129 1.12e-18 84.3
Msa0842210 MtrunA17_Chr2g0278741 24.627 402 270 14 12 399 97 479 3.35e-18 87.4
Msa0842210 MtrunA17_Chr6g0466831 23.391 466 291 16 8 443 15 444 3.90e-18 86.7
Msa0842210 MtrunA17_Chr6g0466841 23.414 457 302 17 8 443 15 444 3.84e-17 83.6
Msa0842210 MtrunA17_Chr8g0336271 26.337 243 160 7 12 239 10 248 5.16e-17 81.3
Msa0842210 MtrunA17_Chr2g0283041 24.208 442 282 16 12 429 7 419 1.44e-16 82.0
Msa0842210 MtrunA17_Chr4g0029131 22.955 440 289 14 12 430 12 422 2.17e-16 82.0
Msa0842210 MtrunA17_Chr8g0334841 33.962 159 89 6 180 333 1 148 2.67e-16 76.6
Msa0842210 MtrunA17_Chr4g0039881 24.557 395 254 15 22 399 2 369 1.20e-15 79.0
Msa0842210 MtrunA17_Chr6g0454281 28.638 213 114 9 11 196 9 210 2.83e-15 74.7
Msa0842210 MtrunA17_Chr6g0454391 32.381 105 70 1 359 463 13 116 1.49e-13 67.4
Msa0842210 MtrunA17_Chr3g0118741 60.000 50 19 1 11 59 5 54 1.99e-13 65.5
Msa0842210 MtrunA17_Chr5g0427561 35.227 88 48 3 381 463 1 84 2.76e-13 65.5
Msa0842210 MtrunA17_Chr2g0319761 23.990 421 271 17 9 408 3 395 1.77e-12 69.3
Msa0842210 MtrunA17_Chr7g0243731 41.429 70 41 0 338 407 4 73 7.90e-12 61.2
Msa0842210 MtrunA17_Chr2g0319801 22.350 434 301 14 12 429 8 421 9.28e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842210 AT1G22380.1 37.185 476 269 12 11 463 12 480 4.18e-97 301
Msa0842210 AT1G22370.2 38.004 471 267 11 11 463 12 475 1.22e-92 289
Msa0842210 AT1G22400.1 35.244 471 280 11 11 460 12 478 2.62e-91 286
Msa0842210 AT1G22360.1 37.107 477 266 13 12 463 10 477 1.00e-90 284
Msa0842210 AT1G22360.2 36.478 477 257 14 12 463 10 465 7.36e-87 274
Msa0842210 AT1G22340.1 35.477 482 270 14 11 463 12 481 1.99e-85 271
Msa0842210 AT1G78270.1 35.021 474 282 12 11 463 12 480 1.33e-83 266
Msa0842210 AT3G11340.1 34.475 467 274 12 7 465 4 446 1.04e-79 254
Msa0842210 AT5G05900.1 34.874 476 250 16 12 463 8 447 7.88e-74 239
Msa0842210 AT5G05880.1 34.100 478 256 14 12 465 8 450 5.69e-71 232
Msa0842210 AT3G55710.1 32.353 476 285 14 6 465 2 456 9.61e-71 232
Msa0842210 AT5G05860.1 35.443 474 261 13 6 463 3 447 6.49e-70 229
Msa0842210 AT3G55700.1 32.203 472 275 14 12 465 8 452 3.43e-69 228
Msa0842210 AT3G46660.1 33.402 485 270 15 1 465 6 457 1.26e-68 226
Msa0842210 AT3G46670.1 33.621 464 276 12 12 465 9 450 2.62e-67 223
Msa0842210 AT5G59590.1 32.489 474 276 15 3 460 1 446 3.21e-67 222
Msa0842210 AT5G05890.1 32.770 473 273 13 12 465 8 454 5.13e-66 219
Msa0842210 AT3G46680.1 32.692 468 266 15 12 460 9 446 3.85e-65 217
Msa0842210 AT5G38010.1 32.495 477 282 14 3 463 1 453 2.16e-64 215
Msa0842210 AT5G59580.1 32.265 468 274 15 12 464 9 448 2.71e-63 212
Msa0842210 AT5G05870.1 31.612 484 274 14 6 463 2 454 3.88e-62 209
Msa0842210 AT4G15480.1 30.252 476 292 12 12 463 19 478 8.35e-62 209
Msa0842210 AT3G46650.1 30.818 477 269 14 3 463 1 432 4.31e-61 206
Msa0842210 AT3G46700.1 31.646 474 268 15 12 465 9 446 4.43e-61 206
Msa0842210 AT3G46690.1 31.828 465 284 11 12 465 9 451 1.76e-60 204
Msa0842210 AT1G22370.1 38.667 300 174 6 173 463 7 305 2.57e-60 200
Msa0842210 AT3G46720.1 31.237 477 281 14 1 465 1 442 2.81e-60 204
Msa0842210 AT5G38040.1 32.096 458 271 15 20 463 18 449 8.00e-60 203
Msa0842210 AT3G02100.1 31.458 480 284 13 6 465 7 461 1.34e-58 200
Msa0842210 AT3G21560.1 31.020 490 289 16 1 461 1 470 3.53e-58 199
Msa0842210 AT2G26480.1 30.022 463 288 13 12 463 8 445 1.04e-56 194
Msa0842210 AT2G43820.1 31.013 474 275 17 12 465 7 448 1.86e-56 194
Msa0842210 AT4G15490.1 30.882 476 284 15 12 461 8 464 2.16e-56 194
Msa0842210 AT2G43840.2 30.149 471 281 15 12 464 7 447 1.13e-55 192
Msa0842210 AT2G43840.1 30.380 474 276 17 12 464 7 447 3.21e-55 191
Msa0842210 AT2G28080.1 30.000 450 284 14 17 447 23 460 1.05e-54 190
Msa0842210 AT4G15500.1 30.417 480 286 12 7 461 4 460 3.02e-54 189
Msa0842210 AT2G36970.1 28.947 494 298 14 3 465 1 472 4.76e-54 188
Msa0842210 AT5G17050.1 30.556 468 286 16 12 463 12 456 1.17e-52 184
Msa0842210 AT1G05675.1 31.064 470 277 14 12 460 6 449 1.28e-51 181
Msa0842210 AT2G31750.1 29.747 474 294 17 7 463 3 454 3.23e-51 180
Msa0842210 AT4G15550.1 28.313 498 272 18 11 461 12 471 6.50e-51 180
Msa0842210 AT2G31750.2 29.747 474 294 17 7 463 3 454 7.40e-51 180
Msa0842210 AT2G31790.1 29.474 475 280 18 12 460 8 453 4.86e-50 177
Msa0842210 AT1G30530.1 30.526 475 285 18 4 463 6 450 1.31e-49 176
Msa0842210 AT5G17030.1 29.916 478 289 16 4 463 6 455 1.75e-49 176
Msa0842210 AT5G17040.1 28.814 472 279 18 12 463 5 439 7.67e-49 173
Msa0842210 AT5G26310.1 30.943 488 262 22 11 456 6 460 3.70e-48 172
Msa0842210 AT1G05680.1 29.498 478 274 14 12 460 6 449 9.17e-48 171
Msa0842210 AT1G05560.2 28.862 492 277 18 6 463 49 501 5.73e-47 170
Msa0842210 AT2G15490.3 30.691 492 276 22 12 461 7 475 6.07e-47 169
Msa0842210 AT4G34138.1 28.367 490 301 15 5 461 4 476 8.55e-47 169
Msa0842210 AT2G15480.1 29.774 487 287 18 12 461 10 478 9.56e-47 169
Msa0842210 AT1G05560.1 28.747 487 274 18 11 463 4 451 1.31e-46 168
Msa0842210 AT5G17040.2 32.558 301 184 9 170 463 49 337 1.45e-46 164
Msa0842210 AT2G15490.1 30.505 495 276 22 12 461 7 478 2.02e-46 168
Msa0842210 AT1G05530.1 28.717 491 272 18 11 463 4 454 3.55e-46 166
Msa0842210 AT2G23260.1 30.586 461 280 18 12 456 10 446 3.69e-46 166
Msa0842210 AT2G15480.2 29.175 497 287 18 12 461 10 488 7.17e-46 166
Msa0842210 AT2G23250.1 31.659 458 275 17 21 466 7 438 7.95e-46 165
Msa0842210 AT2G36760.1 28.994 507 309 17 1 467 1 496 1.45e-45 166
Msa0842210 AT3G16520.3 27.542 472 299 16 13 461 6 457 1.55e-45 165
Msa0842210 AT5G66690.1 30.021 483 273 18 11 456 6 460 1.60e-45 165
Msa0842210 AT3G16520.1 28.434 415 262 13 13 409 6 403 4.96e-45 163
Msa0842210 AT3G16520.2 28.434 415 262 13 13 409 6 403 5.70e-45 163
Msa0842210 AT2G29710.1 27.500 480 301 14 14 466 6 465 1.11e-44 163
Msa0842210 AT1G01420.2 29.638 469 270 17 11 446 10 451 1.88e-44 162
Msa0842210 AT1G01420.1 29.638 469 270 17 11 446 7 448 2.19e-44 162
Msa0842210 AT4G34131.1 28.226 496 290 17 12 465 10 481 1.31e-43 160
Msa0842210 AT4G01070.1 29.060 468 269 17 11 443 7 446 1.74e-43 160
Msa0842210 AT1G24100.1 29.939 491 280 19 2 463 3 458 2.50e-43 159
Msa0842210 AT2G29730.1 26.349 482 308 17 14 468 6 467 2.92e-43 159
Msa0842210 AT4G34135.1 28.163 490 299 15 12 465 11 483 1.22e-42 157
Msa0842210 AT2G36750.1 29.592 490 291 19 12 463 10 483 2.35e-42 157
Msa0842210 AT2G36780.1 28.175 504 281 18 12 463 14 488 7.49e-42 155
Msa0842210 AT4G14090.1 28.361 476 282 15 11 461 12 453 1.59e-41 154
Msa0842210 AT2G30140.1 28.270 474 291 18 12 467 13 455 4.72e-41 152
Msa0842210 AT2G30140.2 28.270 474 290 18 12 467 13 454 5.86e-41 152
Msa0842210 AT3G50740.1 29.341 501 277 20 7 461 2 471 8.23e-41 152
Msa0842210 AT2G36770.1 27.907 516 279 19 12 467 14 496 8.72e-41 152
Msa0842210 AT3G22250.1 26.027 438 288 12 11 428 7 428 2.45e-40 150
Msa0842210 AT1G01390.1 29.340 409 252 12 11 399 7 398 9.01e-40 149
Msa0842210 AT1G01390.2 29.340 409 252 12 11 399 24 415 1.30e-39 149
Msa0842210 AT2G36800.1 26.733 505 298 16 7 461 7 489 2.37e-39 149
Msa0842210 AT3G21790.1 27.912 498 290 19 12 463 4 478 6.31e-39 147
Msa0842210 AT3G53160.1 27.148 512 284 18 12 467 8 486 3.50e-38 145
Msa0842210 AT1G73880.1 27.515 487 300 17 6 465 8 468 7.95e-38 144
Msa0842210 AT2G36790.1 27.767 497 304 20 12 467 13 495 1.36e-37 144
Msa0842210 AT3G21760.1 28.019 414 250 13 12 394 4 400 1.02e-35 138
Msa0842210 AT2G30150.2 26.205 477 308 15 3 463 4 452 1.77e-35 137
Msa0842210 AT5G14860.1 29.637 496 273 23 12 461 8 473 4.60e-35 137
Msa0842210 AT2G29750.1 25.684 475 311 12 7 453 3 463 1.03e-33 132
Msa0842210 AT1G07250.1 26.458 480 287 19 14 452 7 461 1.18e-33 132
Msa0842210 AT5G37950.2 32.971 276 160 9 113 382 81 337 1.66e-33 129
Msa0842210 AT3G21780.1 25.959 443 272 14 12 429 4 415 3.87e-33 131
Msa0842210 AT3G53150.1 29.002 431 259 18 3 405 14 425 7.26e-33 130
Msa0842210 AT2G30150.1 26.134 463 298 15 17 463 2 436 8.83e-33 129
Msa0842210 AT5G37950.1 32.852 277 165 10 113 382 81 343 2.29e-32 126
Msa0842210 AT5G03490.1 26.446 484 282 15 11 461 18 460 2.40e-32 129
Msa0842210 AT4G36770.1 26.526 475 279 18 12 447 4 447 1.14e-31 126
Msa0842210 AT1G51210.1 27.021 470 266 16 4 439 7 433 1.22e-31 126
Msa0842210 AT3G21800.1 26.369 493 303 18 13 463 5 479 1.98e-31 126
Msa0842210 AT1G07240.1 29.568 301 182 10 169 452 177 464 2.80e-31 125
Msa0842210 AT2G29740.1 25.361 485 301 14 7 453 3 464 5.86e-31 125
Msa0842210 AT4G15260.1 27.100 369 222 12 123 461 1 352 1.85e-30 121
Msa0842210 AT2G18570.1 25.397 504 270 22 11 456 4 459 2.05e-30 123
Msa0842210 AT4G15280.2 25.249 503 307 18 3 461 26 503 5.41e-30 122
Msa0842210 AT1G07260.1 33.480 227 129 6 240 453 244 461 9.90e-30 121
Msa0842210 AT4G15280.1 25.051 495 303 17 12 463 4 473 1.19e-29 121
Msa0842210 AT3G21750.1 25.806 465 287 13 12 446 4 440 7.81e-29 119
Msa0842210 AT2G18560.1 31.599 269 140 12 217 456 116 369 1.16e-27 114
Msa0842210 AT1G10400.1 32.472 271 154 11 202 460 206 459 5.76e-27 113
Msa0842210 AT2G16890.2 24.416 471 311 17 12 456 9 460 1.09e-25 109
Msa0842210 AT5G49690.1 26.549 452 291 17 6 440 4 431 1.23e-25 109
Msa0842210 AT5G12890.1 28.230 418 242 17 12 394 10 404 1.39e-25 109
Msa0842210 AT1G06000.1 29.630 270 165 8 209 460 168 430 8.04e-25 107
Msa0842210 AT2G16890.3 25.121 414 274 14 12 408 9 403 1.17e-24 106
Msa0842210 AT5G65550.1 26.014 419 274 13 4 407 3 400 9.64e-23 100
Msa0842210 AT5G54010.1 25.485 412 260 14 12 408 6 385 7.04e-22 98.2
Msa0842210 AT2G22590.1 25.118 422 247 13 12 399 15 401 3.76e-19 90.1
Msa0842210 AT4G01070.2 26.911 327 194 12 11 320 7 305 5.79e-19 88.6
Msa0842210 AT4G27560.1 24.221 417 256 16 12 407 7 384 1.86e-17 85.1
Msa0842210 AT4G27570.1 23.981 417 257 16 12 407 7 384 3.09e-17 84.3
Msa0842210 AT1G64910.1 24.020 408 265 15 12 408 6 379 7.82e-16 80.1
Msa0842210 AT4G34135.2 25.000 336 205 13 12 320 11 326 3.09e-15 77.0
Msa0842210 AT5G53990.1 23.684 456 293 17 12 449 6 424 3.77e-15 77.8
Msa0842210 AT4G09500.2 25.183 409 257 17 12 407 6 378 2.70e-14 75.1
Msa0842210 AT5G54060.1 23.173 479 318 15 13 465 14 468 2.01e-12 69.3
Msa0842210 AT4G09500.1 24.384 406 239 14 12 407 6 353 6.86e-12 67.8

Find 111 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATAAGTTGCATTATTT+TGG 0.129986 5_4:-19201747 Msa0842210:CDS
ATGGCAAAATTCACATCTTA+TGG 0.140958 5_4:+19199263 None:intergenic
CTTAATTTCAGATGATAATT+TGG 0.148721 5_4:-19199035 Msa0842210:three_prime_UTR
CTGACCCAACAATCACTTAA+AGG 0.194273 5_4:-19200040 Msa0842210:CDS
TGGGGACTTGAAGACGAATT+TGG 0.196816 5_4:+19199966 None:intergenic
TCTTCCAAGTTTCTGTAAAA+TGG 0.197233 5_4:-19200092 Msa0842210:CDS
CTGTTAGTGCTTGTTGCTTT+TGG 0.225882 5_4:-19201655 Msa0842210:CDS
ATGATTTCTTCTCTCTTCAT+TGG 0.227915 5_4:+19199782 None:intergenic
TCAGAGTTATATACCTCTAA+TGG 0.246805 5_4:+19201589 None:intergenic
ACTGATTTGGCTGCTGAGTT+TGG 0.266869 5_4:-19201701 Msa0842210:CDS
ATTTGTTGATCAGCAAAATA+AGG 0.280250 5_4:+19199512 None:intergenic
GTGAGTGAGGTTTGGAGAAT+TGG 0.287683 5_4:-19199476 Msa0842210:CDS
TGATTTCTTCTCTCTTCATT+GGG 0.288337 5_4:+19199783 None:intergenic
AAATACAACCTTGTCTAATA+TGG 0.296217 5_4:+19200063 None:intergenic
AAGATTTGGTTGAGTATATA+AGG 0.297268 5_4:-19199295 Msa0842210:CDS
CTACAACAACTTCCAAGATT+TGG 0.297458 5_4:-19199309 Msa0842210:CDS
CCAAACATGGTACAAGAAAA+AGG 0.313624 5_4:-19199704 Msa0842210:CDS
GGGCCAATGGTGTAGAGTTT+GGG 0.329587 5_4:+19199947 None:intergenic
AGGGCCAATGGTGTAGAGTT+TGG 0.331795 5_4:+19199946 None:intergenic
CTGATTTGGCTGCTGAGTTT+GGG 0.334780 5_4:-19201700 Msa0842210:CDS
GAGAAGAAATCATTGAGATT+TGG 0.337296 5_4:-19199772 Msa0842210:CDS
GAGGAGAAACATCCTGGATT+TGG 0.341896 5_4:-19201845 Msa0842210:CDS
ATCATCTGAAATTAAGTTAA+GGG 0.347177 5_4:+19199042 None:intergenic
GGGGACTTGAAGACGAATTT+GGG 0.347598 5_4:+19199967 None:intergenic
TGTAAAATCAGCCATGGATA+TGG 0.357578 5_4:-19199372 Msa0842210:CDS
CTGATCAACAAATTAATAGT+AGG 0.360356 5_4:-19199502 Msa0842210:CDS
TTTATCTGTTCCAAAGCTTT+CGG 0.363258 5_4:-19201627 Msa0842210:CDS
GTAGCCTTGTAAAATTGTTT+AGG 0.366018 5_4:-19199084 Msa0842210:three_prime_UTR
TGGTGACCTTGCTACTGATT+TGG 0.367535 5_4:-19201714 Msa0842210:CDS
CTGTGTTGAGGAAAGTTATA+TGG 0.368749 5_4:+19201969 None:intergenic
TGAGTGAGGTTTGGAGAATT+GGG 0.369652 5_4:-19199475 Msa0842210:CDS
GTAGGTTTGTGAGTGAGGTT+TGG 0.393510 5_4:-19199484 Msa0842210:CDS
CACAGTGAGGAGAAACATCC+TGG 0.393643 5_4:-19201851 Msa0842210:CDS
CAGAGTTATATACCTCTAAT+GGG 0.395783 5_4:+19201590 None:intergenic
TATCATCTGAAATTAAGTTA+AGG 0.398365 5_4:+19199041 None:intergenic
CAAATCTTGGAAGTTGTTGT+AGG 0.402443 5_4:+19199310 None:intergenic
CACTTCGAAGAAATTGCTCT+TGG 0.410544 5_4:+19199880 None:intergenic
TGGCAAAATTCACATCTTAT+GGG 0.411284 5_4:+19199264 None:intergenic
ATAGTCTTGAATTGAAGCTT+AGG 0.412111 5_4:+19201884 None:intergenic
TTATATACTCAACCAAATCT+TGG 0.416061 5_4:+19199297 None:intergenic
TGCAATGAACTTCCCATTAG+AGG 0.423671 5_4:-19201602 Msa0842210:intron
CGTTGCCTTTAAGTGATTGT+TGG 0.430560 5_4:+19200035 None:intergenic
ACCACCAGGACTCACACTCT+TGG 0.441655 5_4:+19199337 None:intergenic
AGACGAATTTGGGAGAGTAC+TGG 0.442326 5_4:+19199977 None:intergenic
GGATTTACATGGCCTTGTGC+TGG 0.447440 5_4:+19202031 None:intergenic
GAGAATTGGGTTGGATATGA+AGG 0.449432 5_4:-19199462 Msa0842210:CDS
GACGAATTTGGGAGAGTACT+GGG 0.450146 5_4:+19199978 None:intergenic
ACATATACAACTGATTTCAA+TGG 0.452689 5_4:+19199824 None:intergenic
ACTTTGGAGAGTGTGATTTG+TGG 0.454735 5_4:-19199554 Msa0842210:CDS
TCATTGCACTCCGAAAGCTT+TGG 0.458291 5_4:+19201617 None:intergenic
AAATAAGGCCAACATATCAT+AGG 0.459700 5_4:+19199527 None:intergenic
TTATAAAATGATAGTGAGAA+TGG 0.459991 5_4:-19199112 Msa0842210:three_prime_UTR
TCAGTTGTATATGTTAGCTT+TGG 0.464636 5_4:-19199815 Msa0842210:CDS
TGAATGATGTTATGGTGAAT+AGG 0.471178 5_4:-19199406 Msa0842210:CDS
TAATAGTAGGTTTGTGAGTG+AGG 0.474155 5_4:-19199489 Msa0842210:CDS
GCATATGGTGAATGATGTTA+TGG 0.476831 5_4:-19199414 Msa0842210:CDS
GAAAGGAATGATTGTGGGGT+GGG 0.487132 5_4:-19199645 Msa0842210:CDS
TAGGAATGTTGTTGAGCATA+TGG 0.495288 5_4:-19199429 Msa0842210:CDS
AGCCATGGATATGGCTAAGT+TGG 0.496465 5_4:-19199363 Msa0842210:CDS
ACATCCTGGATTTGGAGAAA+AGG 0.498115 5_4:-19201837 Msa0842210:CDS
AAAGAGAAAGGAATGATTGT+GGG 0.503138 5_4:-19199650 Msa0842210:CDS
CAAGAGCAATTTCTTCGAAG+TGG 0.508844 5_4:-19199879 Msa0842210:CDS
GTTGCCTTTAAGTGATTGTT+GGG 0.509980 5_4:+19200036 None:intergenic
TAGTCTTGAATTGAAGCTTA+GGG 0.511757 5_4:+19201885 None:intergenic
TGAGGTTTGGAGAATTGGGT+TGG 0.516327 5_4:-19199471 Msa0842210:CDS
TCAAACTAATGAGACGGTTG+TGG 0.517020 5_4:+19201939 None:intergenic
AGTTCAGCTAGCTTTAGCAT+AGG 0.517492 5_4:+19202010 None:intergenic
ATATGAAGGATGTTTGTGAT+AGG 0.519622 5_4:-19199448 Msa0842210:CDS
CATAAGAAACGTGCCAGGCA+TGG 0.531082 5_4:-19200137 Msa0842210:CDS
GTCCCCAAACTCTACACCAT+TGG 0.531566 5_4:-19199950 Msa0842210:CDS
ACATGGCCTTGTGCTGGACA+TGG 0.534043 5_4:+19202037 None:intergenic
GCTTTAGCATAGGATTTACA+TGG 0.537832 5_4:+19202020 None:intergenic
GATTTCTTCTCTCTTCATTG+GGG 0.540894 5_4:+19199784 None:intergenic
TAGTGGGTGGAACTCTACTT+TGG 0.543912 5_4:-19199570 Msa0842210:CDS
GAAGGGACTACAAAAGAGAA+AGG 0.545265 5_4:-19199662 Msa0842210:CDS
GCATCCAAGAGTGTGAGTCC+TGG 0.552305 5_4:-19199341 Msa0842210:CDS
GAAGATTAGCACATGTGGTA+AGG 0.554483 5_4:+19202060 None:intergenic
GTGGAGTGCCTATGATATGT+TGG 0.555355 5_4:-19199535 Msa0842210:CDS
CTATTGAAGGAGCTTGAGGA+AGG 0.558458 5_4:-19199680 Msa0842210:CDS
GGTTAAATTTATAGGAGATG+AGG 0.559641 5_4:-19200173 Msa0842210:intron
AAAAGAGAAAGGAATGATTG+TGG 0.560272 5_4:-19199651 Msa0842210:CDS
CGCATCATAAGAAACGTGCC+AGG 0.561151 5_4:-19200142 Msa0842210:CDS
GTGGTGGTGAAGAGGGCCAA+TGG 0.570422 5_4:+19199934 None:intergenic
AGGACTATTGAAGGAGCTTG+AGG 0.572112 5_4:-19199684 Msa0842210:CDS
AGAAAGGAATGATTGTGGGG+TGG 0.582068 5_4:-19199646 Msa0842210:CDS
TCCAAGAGTGTGAGTCCTGG+TGG 0.586272 5_4:-19199338 Msa0842210:CDS
CGAAGTGGATAGAACTTGCA+TGG 0.587606 5_4:-19199864 Msa0842210:CDS
GTGGGTGATTAGGCCAAACA+TGG 0.589150 5_4:-19199717 Msa0842210:CDS
CATGGCCTTGTGCTGGACAT+GGG 0.589394 5_4:+19202038 None:intergenic
TATTGAGGTGGTGGTGAAGA+GGG 0.591385 5_4:+19199927 None:intergenic
TGTGGGGTGGGTTCCACAAG+AGG 0.592500 5_4:-19199633 Msa0842210:CDS
GTATTGAGGTGGTGGTGAAG+AGG 0.603611 5_4:+19199926 None:intergenic
ATCTTCCCATGTCCAGCACA+AGG 0.604045 5_4:-19202043 Msa0842210:CDS
TGCCAACTTAGCCATATCCA+TGG 0.606456 5_4:+19199361 None:intergenic
GGAGTTTGTAAAATCAGCCA+TGG 0.612612 5_4:-19199378 Msa0842210:CDS
GAAATCATTGAGATTTGGCA+CGG 0.614016 5_4:-19199767 Msa0842210:CDS
CATGGGAAGATTAGCACATG+TGG 0.614840 5_4:+19202055 None:intergenic
CCTGGATTTGGAGAAAAGGT+AGG 0.615543 5_4:-19201833 Msa0842210:CDS
TATTGAAGGAGCTTGAGGAA+GGG 0.618899 5_4:-19199679 Msa0842210:CDS
GGCCAATGGTGTAGAGTTTG+GGG 0.619371 5_4:+19199948 None:intergenic
CATCATTCAAACTAATGAGA+CGG 0.619910 5_4:+19201933 None:intergenic
TGTGACAAAACTTCCTCTTG+TGG 0.629987 5_4:+19199620 None:intergenic
CAGCAGCCAAATCAGTAGCA+AGG 0.634571 5_4:+19201708 None:intergenic
ACGAATTTGGGAGAGTACTG+GGG 0.634682 5_4:+19199979 None:intergenic
ATTTATAGGAGATGAGGACA+TGG 0.638183 5_4:-19200167 Msa0842210:intron
AAGAGAAAGGAATGATTGTG+GGG 0.662428 5_4:-19199649 Msa0842210:CDS
TGTTATGGTGAATAGGAATG+AGG 0.664290 5_4:-19199399 Msa0842210:CDS
TGGATAGAACTTGCATGGTG+TGG 0.668370 5_4:-19199859 Msa0842210:CDS
TGTGGATGTACTCTGTGTTG+AGG 0.670603 5_4:+19201957 None:intergenic
TTGTTGTAGGAAGAACCACC+AGG 0.680627 5_4:+19199323 None:intergenic
GGATGATACCATATTAGACA+AGG 0.696504 5_4:-19200071 Msa0842210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATGTTCATTTTATCA+TGG - chr5_4:19199580-19199599 Msa0842210:CDS 15.0%
!! TTATCTAACTATTTAGTTAA+AGG + chr5_4:19199630-19199649 None:intergenic 15.0%
!! ATATAAAGTAGTTTGAAAAA+TGG - chr5_4:19200264-19200283 Msa0842210:intron 15.0%
!!! AAAATAAATACATTTTGTCA+GGG + chr5_4:19200540-19200559 None:intergenic 15.0%
!!! AAAAATAAATACATTTTGTC+AGG + chr5_4:19200541-19200560 None:intergenic 15.0%
!! CATAAAAATAAGTATGTATT+TGG - chr5_4:19201817-19201836 Msa0842210:CDS 15.0%
!!! GTTTTTTACCAAAAAAAATT+TGG - chr5_4:19201857-19201876 Msa0842210:CDS 15.0%
!!! AAAAACAACCAAATTTTTTT+TGG + chr5_4:19201868-19201887 None:intergenic 15.0%
!! ACAATTATATCTCTCAAAAA+AGG + chr5_4:19199233-19199252 None:intergenic 20.0%
!!! GAAAATAAGTTGCATTATTT+TGG - chr5_4:19199259-19199278 Msa0842210:three_prime_UTR 20.0%
!!! ATTATTTTGGATGGAATATT+TGG - chr5_4:19199272-19199291 Msa0842210:exon 20.0%
!!! CATTTTTTACTCAATTATTC+TGG + chr5_4:19199513-19199532 None:intergenic 20.0%
!! TATGTAAACTAACTAAAGTA+CGG - chr5_4:19199655-19199674 Msa0842210:CDS 20.0%
!! AGGGATAATATTACTTAAAT+GGG + chr5_4:19200033-19200052 None:intergenic 20.0%
!!! CTTTTTTTTGTTGTAACTTT+TGG - chr5_4:19200570-19200589 Msa0842210:intron 20.0%
!!! ATGATTTTTTTGTTGTATTG+AGG + chr5_4:19201097-19201116 None:intergenic 20.0%
!!! ATAGCAAAAAACTATTTTTG+TGG - chr5_4:19201270-19201289 Msa0842210:intron 20.0%
!!! TAGCAAAAAACTATTTTTGT+GGG - chr5_4:19201271-19201290 Msa0842210:intron 20.0%
!!! TTTTTAGTAGGAGAATTAAA+TGG + chr5_4:19201765-19201784 None:intergenic 20.0%
!!! AAATATGAGAAGTTTTTAGT+AGG + chr5_4:19201777-19201796 None:intergenic 20.0%
!!! TTATAAAATGATAGTGAGAA+TGG - chr5_4:19201894-19201913 Msa0842210:CDS 20.0%
!!! ATCATCTGAAATTAAGTTAA+GGG + chr5_4:19201967-19201986 None:intergenic 20.0%
!!! TATCATCTGAAATTAAGTTA+AGG + chr5_4:19201968-19201987 None:intergenic 20.0%
!! CTTAATTTCAGATGATAATT+TGG - chr5_4:19201971-19201990 Msa0842210:CDS 20.0%
!!! TCTCATAATTTTGATTCTTT+AGG - chr5_4:19202034-19202053 Msa0842210:CDS 20.0%
!!! ATAAGTTGCATTATTTTGGA+TGG - chr5_4:19199263-19199282 Msa0842210:exon 25.0%
! CTGATAATTAAAACTCTAAG+AGG + chr5_4:19199447-19199466 None:intergenic 25.0%
! TAGTTAAAGGAAAAGTAAAG+AGG + chr5_4:19199617-19199636 None:intergenic 25.0%
!! GTACTTTAGTTAGTTTACAT+AGG + chr5_4:19199656-19199675 None:intergenic 25.0%
! ATGTAAACTAACTAAAGTAC+GGG - chr5_4:19199656-19199675 Msa0842210:CDS 25.0%
! TTATTGAAAACTCACATAAG+TGG + chr5_4:19199686-19199705 None:intergenic 25.0%
! TAACTATTGTCATCTATTCT+AGG - chr5_4:19199703-19199722 Msa0842210:CDS 25.0%
! GGGATAATATTACTTAAATG+GGG + chr5_4:19200032-19200051 None:intergenic 25.0%
! GAGGGATAATATTACTTAAA+TGG + chr5_4:19200034-19200053 None:intergenic 25.0%
! ATGATTAAGCTCAAAGTTAA+AGG - chr5_4:19200067-19200086 Msa0842210:CDS 25.0%
!!! AATCATGGAGTATTTTATGT+TGG + chr5_4:19200093-19200112 None:intergenic 25.0%
! ATGAAAAAACTAACAAGAGA+TGG + chr5_4:19200237-19200256 None:intergenic 25.0%
! AGTTTGAAAAATGGAAAACA+TGG - chr5_4:19200273-19200292 Msa0842210:intron 25.0%
!! GGTGTTATAGACTTTAATTA+TGG - chr5_4:19200727-19200746 Msa0842210:intron 25.0%
!! AGTGTTCTGGTTAAATTTAT+AGG - chr5_4:19200825-19200844 Msa0842210:intron 25.0%
! AAATACAACCTTGTCTAATA+TGG + chr5_4:19200946-19200965 None:intergenic 25.0%
!!! ATTTTTTTGTTGTATTGAGG+TGG + chr5_4:19201094-19201113 None:intergenic 25.0%
!! ACATATACAACTGATTTCAA+TGG + chr5_4:19201185-19201204 None:intergenic 25.0%
!! ATTTGTTGATCAGCAAAATA+AGG + chr5_4:19201497-19201516 None:intergenic 25.0%
! CTGATCAACAAATTAATAGT+AGG - chr5_4:19201504-19201523 Msa0842210:intron 25.0%
! TTATATACTCAACCAAATCT+TGG + chr5_4:19201712-19201731 None:intergenic 25.0%
!! AAGATTTGGTTGAGTATATA+AGG - chr5_4:19201711-19201730 Msa0842210:CDS 25.0%
!! TCTACCTAAACAATTTTACA+AGG + chr5_4:19201929-19201948 None:intergenic 25.0%
!!! TGTGGTAAGGATTTTTTCTT+AGG + chr5_4:19198936-19198955 None:intergenic 30.0%
CATCATTCAAACTAATGAGA+CGG + chr5_4:19199076-19199095 None:intergenic 30.0%
! TAGTCTTGAATTGAAGCTTA+GGG + chr5_4:19199124-19199143 None:intergenic 30.0%
! ATAGTCTTGAATTGAAGCTT+AGG + chr5_4:19199125-19199144 None:intergenic 30.0%
! ATTTTGTCACTGAGTTTGTA+TGG - chr5_4:19199203-19199222 Msa0842210:three_prime_UTR 30.0%
TTTATCTGTTCCAAAGCTTT+CGG - chr5_4:19199379-19199398 Msa0842210:CDS 30.0%
CAGAGTTATATACCTCTAAT+GGG + chr5_4:19199419-19199438 None:intergenic 30.0%
TCAGAGTTATATACCTCTAA+TGG + chr5_4:19199420-19199439 None:intergenic 30.0%
TGTAAACTAACTAAAGTACG+GGG - chr5_4:19199657-19199676 Msa0842210:CDS 30.0%
ATGCAACCTTTGAATTAACT+AGG - chr5_4:19199773-19199792 Msa0842210:CDS 30.0%
AGCATACCTAGTTAATTCAA+AGG + chr5_4:19199782-19199801 None:intergenic 30.0%
TTCTAACGCAACAAAATGTA+GGG - chr5_4:19199815-19199834 Msa0842210:CDS 30.0%
!!! TTTGGTTCGATTTGGATTTT+CGG + chr5_4:19199871-19199890 None:intergenic 30.0%
!! AACATGGTCGAATACTTTTT+CGG + chr5_4:19199894-19199913 None:intergenic 30.0%
CTTAATCATAAGTGTTTGTG+AGG + chr5_4:19200056-19200075 None:intergenic 30.0%
TGAACCAATGAAATCTTCAT+CGG + chr5_4:19200473-19200492 None:intergenic 30.0%
! AGATGAATTTTGCTACACAT+TGG - chr5_4:19200633-19200652 Msa0842210:intron 30.0%
TATGAAACACTTCTAACAGA+AGG - chr5_4:19200706-19200725 Msa0842210:intron 30.0%
AATGAGTTATACTAGTGTTC+TGG - chr5_4:19200812-19200831 Msa0842210:intron 30.0%
GGTTAAATTTATAGGAGATG+AGG - chr5_4:19200833-19200852 Msa0842210:intron 30.0%
TCTTCCAAGTTTCTGTAAAA+TGG - chr5_4:19200914-19200933 Msa0842210:intron 30.0%
! TCATCCATTTTACAGAAACT+TGG + chr5_4:19200921-19200940 None:intergenic 30.0%
! TCAGTTGTATATGTTAGCTT+TGG - chr5_4:19201191-19201210 Msa0842210:intron 30.0%
TGATTTCTTCTCTCTTCATT+GGG + chr5_4:19201226-19201245 None:intergenic 30.0%
ATGATTTCTTCTCTCTTCAT+TGG + chr5_4:19201227-19201246 None:intergenic 30.0%
GAGAAGAAATCATTGAGATT+TGG - chr5_4:19201234-19201253 Msa0842210:intron 30.0%
!!! AACTATTTTTGTGGGTGATT+AGG - chr5_4:19201279-19201298 Msa0842210:intron 30.0%
ACAAGAAAAAGGACTATTGA+AGG - chr5_4:19201313-19201332 Msa0842210:intron 30.0%
AAAAGAGAAAGGAATGATTG+TGG - chr5_4:19201355-19201374 Msa0842210:intron 30.0%
AAAGAGAAAGGAATGATTGT+GGG - chr5_4:19201356-19201375 Msa0842210:intron 30.0%
AAATAAGGCCAACATATCAT+AGG + chr5_4:19201482-19201501 None:intergenic 30.0%
ATATGAAGGATGTTTGTGAT+AGG - chr5_4:19201558-19201577 Msa0842210:intron 30.0%
TGAATGATGTTATGGTGAAT+AGG - chr5_4:19201600-19201619 Msa0842210:intron 30.0%
TGGCAAAATTCACATCTTAT+GGG + chr5_4:19201745-19201764 None:intergenic 30.0%
ATGGCAAAATTCACATCTTA+TGG + chr5_4:19201746-19201765 None:intergenic 30.0%
TTTGGACGTGAAAAAATTGA+TGG - chr5_4:19201835-19201854 Msa0842210:CDS 30.0%
!! GTAGCCTTGTAAAATTGTTT+AGG - chr5_4:19201922-19201941 Msa0842210:CDS 30.0%
GCTTTAGCATAGGATTTACA+TGG + chr5_4:19198989-19199008 None:intergenic 35.0%
CTGTGTTGAGGAAAGTTATA+TGG + chr5_4:19199040-19199059 None:intergenic 35.0%
! TATCTCTGATTTTCACAGTG+AGG - chr5_4:19199142-19199161 Msa0842210:three_prime_UTR 35.0%
!!! TGTTAGTGCTTGTTGCTTTT+GGG - chr5_4:19199352-19199371 Msa0842210:CDS 35.0%
TAACTAGGTATGCTTGTCAT+AGG - chr5_4:19199788-19199807 Msa0842210:CDS 35.0%
CTTCTAACGCAACAAAATGT+AGG - chr5_4:19199814-19199833 Msa0842210:CDS 35.0%
TCTAACGCAACAAAATGTAG+GGG - chr5_4:19199816-19199835 Msa0842210:CDS 35.0%
!!! TTTTTCGGTTTGGTTCGATT+TGG + chr5_4:19199879-19199898 None:intergenic 35.0%
GTATTCGACCATGTTTGTTT+CGG - chr5_4:19199899-19199918 Msa0842210:CDS 35.0%
!! GTTTTGAACCGAAACAAACA+TGG + chr5_4:19199910-19199929 None:intergenic 35.0%
! TAAACCGATCTAGTTTGGTT+CGG - chr5_4:19199945-19199964 Msa0842210:CDS 35.0%
TATTACTTAAATGGGGAGTG+AGG + chr5_4:19200025-19200044 None:intergenic 35.0%
ATCATAAGTGTTTGTGAGGA+GGG + chr5_4:19200052-19200071 None:intergenic 35.0%
AATCATAAGTGTTTGTGAGG+AGG + chr5_4:19200053-19200072 None:intergenic 35.0%
TGATGAGATGAGATGATGAT+GGG + chr5_4:19200128-19200147 None:intergenic 35.0%
!! TTTAGATTGGTTCGGTTGAT+CGG + chr5_4:19200392-19200411 None:intergenic 35.0%
!! TGGTTTGGTTTAGATTGGTT+CGG + chr5_4:19200400-19200419 None:intergenic 35.0%
! CAATGAAATCTTCATCGGTT+CGG + chr5_4:19200468-19200487 None:intergenic 35.0%
! ACATTTTGTCAGGGAAGTAA+CGG + chr5_4:19200531-19200550 None:intergenic 35.0%
TGCGACTGATGCAAATAATA+TGG - chr5_4:19200769-19200788 Msa0842210:intron 35.0%
ATTTATAGGAGATGAGGACA+TGG - chr5_4:19200839-19200858 Msa0842210:intron 35.0%
GGATGATACCATATTAGACA+AGG - chr5_4:19200935-19200954 Msa0842210:intron 35.0%
GTTGCCTTTAAGTGATTGTT+GGG + chr5_4:19200973-19200992 None:intergenic 35.0%
!! TTTTTGTTGTATTGAGGTGG+TGG + chr5_4:19201091-19201110 None:intergenic 35.0%
GATTTCTTCTCTCTTCATTG+GGG + chr5_4:19201225-19201244 None:intergenic 35.0%
GAAATCATTGAGATTTGGCA+CGG - chr5_4:19201239-19201258 Msa0842210:intron 35.0%
! CCTTTTTCTTGTACCATGTT+TGG + chr5_4:19201305-19201324 None:intergenic 35.0%
CCAAACATGGTACAAGAAAA+AGG - chr5_4:19201302-19201321 Msa0842210:intron 35.0%
AAGAGAAAGGAATGATTGTG+GGG - chr5_4:19201357-19201376 Msa0842210:intron 35.0%
!!! GTGCTTTTTTGACACATAGT+GGG - chr5_4:19201420-19201439 Msa0842210:intron 35.0%
TAATAGTAGGTTTGTGAGTG+AGG - chr5_4:19201517-19201536 Msa0842210:intron 35.0%
TAGGAATGTTGTTGAGCATA+TGG - chr5_4:19201577-19201596 Msa0842210:intron 35.0%
GCATATGGTGAATGATGTTA+TGG - chr5_4:19201592-19201611 Msa0842210:intron 35.0%
TGTTATGGTGAATAGGAATG+AGG - chr5_4:19201607-19201626 Msa0842210:CDS 35.0%
TGTAAAATCAGCCATGGATA+TGG - chr5_4:19201634-19201653 Msa0842210:CDS 35.0%
CAAATCTTGGAAGTTGTTGT+AGG + chr5_4:19201699-19201718 None:intergenic 35.0%
CTACAACAACTTCCAAGATT+TGG - chr5_4:19201697-19201716 Msa0842210:CDS 35.0%
GAAGATTAGCACATGTGGTA+AGG + chr5_4:19198949-19198968 None:intergenic 40.0%
!! AGTTCAGCTAGCTTTAGCAT+AGG + chr5_4:19198999-19199018 None:intergenic 40.0%
TCAAACTAATGAGACGGTTG+TGG + chr5_4:19199070-19199089 None:intergenic 40.0%
ACATCCTGGATTTGGAGAAA+AGG - chr5_4:19199169-19199188 Msa0842210:three_prime_UTR 40.0%
!!! CTGTTAGTGCTTGTTGCTTT+TGG - chr5_4:19199351-19199370 Msa0842210:CDS 40.0%
TGCAATGAACTTCCCATTAG+AGG - chr5_4:19199404-19199423 Msa0842210:CDS 40.0%
!! CCATAAGATGGTGTTTTGAG+TGG + chr5_4:19199538-19199557 None:intergenic 40.0%
CCACTCAAAACACCATCTTA+TGG - chr5_4:19199535-19199554 Msa0842210:CDS 40.0%
CACCATCTTATGGATCTAGT+AGG - chr5_4:19199545-19199564 Msa0842210:CDS 40.0%
CACCTACTAGATCCATAAGA+TGG + chr5_4:19199550-19199569 None:intergenic 40.0%
TCTTATGGATCTAGTAGGTG+AGG - chr5_4:19199550-19199569 Msa0842210:CDS 40.0%
! ACAAAATGTAGGGGTGTAAG+TGG - chr5_4:19199825-19199844 Msa0842210:CDS 40.0%
!!! GGTCGAATACTTTTTCGGTT+TGG + chr5_4:19199889-19199908 None:intergenic 40.0%
!! TAGATCGGTTTAGGTTGGTT+TGG + chr5_4:19199937-19199956 None:intergenic 40.0%
! CAAACTAGATCGGTTTAGGT+TGG + chr5_4:19199942-19199961 None:intergenic 40.0%
CAACCTAAACCGATCTAGTT+TGG - chr5_4:19199940-19199959 Msa0842210:CDS 40.0%
! GAACCAAACTAGATCGGTTT+AGG + chr5_4:19199946-19199965 None:intergenic 40.0%
AGAACCGAACCAAACTAGAT+CGG + chr5_4:19199952-19199971 None:intergenic 40.0%
!! ATCTAGTTTGGTTCGGTTCT+CGG - chr5_4:19199952-19199971 Msa0842210:CDS 40.0%
AGAAGAACCGATGAACCAAA+CGG - chr5_4:19199992-19200011 Msa0842210:CDS 40.0%
! TTAGCATCCGTTTGGTTCAT+CGG + chr5_4:19200002-19200021 None:intergenic 40.0%
GGGAGAAAGTGAATGAATCA+TGG + chr5_4:19200108-19200127 None:intergenic 40.0%
GTGATGAGATGAGATGATGA+TGG + chr5_4:19200129-19200148 None:intergenic 40.0%
!! CGGTTTGGTTTGGTTTAGAT+TGG + chr5_4:19200405-19200424 None:intergenic 40.0%
AGAAACCGAACCAAACTAGT+CGG + chr5_4:19200425-19200444 None:intergenic 40.0%
CGAACCGATGAAGATTTCAT+TGG - chr5_4:19200466-19200485 Msa0842210:intron 40.0%
CTGACCCAACAATCACTTAA+AGG - chr5_4:19200966-19200985 Msa0842210:intron 40.0%
CGTTGCCTTTAAGTGATTGT+TGG + chr5_4:19200974-19200993 None:intergenic 40.0%
CACTTCGAAGAAATTGCTCT+TGG + chr5_4:19201129-19201148 None:intergenic 40.0%
CAAGAGCAATTTCTTCGAAG+TGG - chr5_4:19201127-19201146 Msa0842210:intron 40.0%
TATTGAAGGAGCTTGAGGAA+GGG - chr5_4:19201327-19201346 Msa0842210:intron 40.0%
GAAGGGACTACAAAAGAGAA+AGG - chr5_4:19201344-19201363 Msa0842210:intron 40.0%
TGTGACAAAACTTCCTCTTG+TGG + chr5_4:19201389-19201408 None:intergenic 40.0%
! GTTTTGTCACACAGAGCAAT+TGG - chr5_4:19201398-19201417 Msa0842210:intron 40.0%
!!! GGTGCTTTTTTGACACATAG+TGG - chr5_4:19201419-19201438 Msa0842210:intron 40.0%
!!! CTTTTTTGACACATAGTGGG+TGG - chr5_4:19201423-19201442 Msa0842210:intron 40.0%
! ACTTTGGAGAGTGTGATTTG+TGG - chr5_4:19201452-19201471 Msa0842210:intron 40.0%
TGAGTGAGGTTTGGAGAATT+GGG - chr5_4:19201531-19201550 Msa0842210:intron 40.0%
!! GAGAATTGGGTTGGATATGA+AGG - chr5_4:19201544-19201563 Msa0842210:intron 40.0%
GGAGTTTGTAAAATCAGCCA+TGG - chr5_4:19201628-19201647 Msa0842210:CDS 40.0%
CATGGGAAGATTAGCACATG+TGG + chr5_4:19198954-19198973 None:intergenic 45.0%
TGTGGATGTACTCTGTGTTG+AGG + chr5_4:19199052-19199071 None:intergenic 45.0%
GAGGAGAAACATCCTGGATT+TGG - chr5_4:19199161-19199180 Msa0842210:three_prime_UTR 45.0%
! CCTACCTTTTCTCCAAATCC+AGG + chr5_4:19199176-19199195 None:intergenic 45.0%
CCTGGATTTGGAGAAAAGGT+AGG - chr5_4:19199173-19199192 Msa0842210:three_prime_UTR 45.0%
! TGGTGACCTTGCTACTGATT+TGG - chr5_4:19199292-19199311 Msa0842210:CDS 45.0%
!! ACTGATTTGGCTGCTGAGTT+TGG - chr5_4:19199305-19199324 Msa0842210:CDS 45.0%
!! CTGATTTGGCTGCTGAGTTT+GGG - chr5_4:19199306-19199325 Msa0842210:CDS 45.0%
TCATTGCACTCCGAAAGCTT+TGG + chr5_4:19199392-19199411 None:intergenic 45.0%
!! CGGTTTAGGTTGGTTTGGTT+TGG + chr5_4:19199932-19199951 None:intergenic 45.0%
GATGAGTTAGGTGTGACTAG+TGG + chr5_4:19200190-19200209 None:intergenic 45.0%
!! CCAAACTAGTCGGTTTGGTT+TGG + chr5_4:19200415-19200434 None:intergenic 45.0%
! CCAAACCAAACCGACTAGTT+TGG - chr5_4:19200412-19200431 Msa0842210:intron 45.0%
!! CCAAACCGACTAGTTTGGTT+CGG - chr5_4:19200417-19200436 Msa0842210:intron 45.0%
!!! GTTCGGTTTGGATCGGTTTT+TGG + chr5_4:19200509-19200528 None:intergenic 45.0%
!! AGTAACGGTTCGGTTTGGAT+CGG + chr5_4:19200516-19200535 None:intergenic 45.0%
TTGTCAGGGAAGTAACGGTT+CGG + chr5_4:19200526-19200545 None:intergenic 45.0%
! CGAAGCAAATTTTCCATGCC+TGG + chr5_4:19200885-19200904 None:intergenic 45.0%
!! ACGAATTTGGGAGAGTACTG+GGG + chr5_4:19201030-19201049 None:intergenic 45.0%
!! GACGAATTTGGGAGAGTACT+GGG + chr5_4:19201031-19201050 None:intergenic 45.0%
! AGACGAATTTGGGAGAGTAC+TGG + chr5_4:19201032-19201051 None:intergenic 45.0%
GGGGACTTGAAGACGAATTT+GGG + chr5_4:19201042-19201061 None:intergenic 45.0%
TGGGGACTTGAAGACGAATT+TGG + chr5_4:19201043-19201062 None:intergenic 45.0%
! TATTGAGGTGGTGGTGAAGA+GGG + chr5_4:19201082-19201101 None:intergenic 45.0%
CGAAGTGGATAGAACTTGCA+TGG - chr5_4:19201142-19201161 Msa0842210:intron 45.0%
TGGATAGAACTTGCATGGTG+TGG - chr5_4:19201147-19201166 Msa0842210:intron 45.0%
AGGACTATTGAAGGAGCTTG+AGG - chr5_4:19201322-19201341 Msa0842210:intron 45.0%
CTATTGAAGGAGCTTGAGGA+AGG - chr5_4:19201326-19201345 Msa0842210:intron 45.0%
AGAAAGGAATGATTGTGGGG+TGG - chr5_4:19201360-19201379 Msa0842210:intron 45.0%
GAAAGGAATGATTGTGGGGT+GGG - chr5_4:19201361-19201380 Msa0842210:intron 45.0%
! TAGTGGGTGGAACTCTACTT+TGG - chr5_4:19201436-19201455 Msa0842210:intron 45.0%
! GTGGAGTGCCTATGATATGT+TGG - chr5_4:19201471-19201490 Msa0842210:intron 45.0%
GTAGGTTTGTGAGTGAGGTT+TGG - chr5_4:19201522-19201541 Msa0842210:intron 45.0%
GTGAGTGAGGTTTGGAGAAT+TGG - chr5_4:19201530-19201549 Msa0842210:intron 45.0%
TGAGGTTTGGAGAATTGGGT+TGG - chr5_4:19201535-19201554 Msa0842210:intron 45.0%
AGCCATGGATATGGCTAAGT+TGG - chr5_4:19201643-19201662 Msa0842210:CDS 45.0%
TGCCAACTTAGCCATATCCA+TGG + chr5_4:19201648-19201667 None:intergenic 45.0%
TTGTTGTAGGAAGAACCACC+AGG + chr5_4:19201686-19201705 None:intergenic 45.0%
ATCTTCCCATGTCCAGCACA+AGG - chr5_4:19198963-19198982 Msa0842210:three_prime_UTR 50.0%
!! GGATTTACATGGCCTTGTGC+TGG + chr5_4:19198978-19198997 None:intergenic 50.0%
CACAGTGAGGAGAAACATCC+TGG - chr5_4:19199155-19199174 Msa0842210:three_prime_UTR 50.0%
CAGCAGCCAAATCAGTAGCA+AGG + chr5_4:19199301-19199320 None:intergenic 50.0%
GAGTGAGGTTAGCATCCGTT+TGG + chr5_4:19200010-19200029 None:intergenic 50.0%
GTGGTGAGGAACGATGAGTT+AGG + chr5_4:19200202-19200221 None:intergenic 50.0%
CAAGAGATGGACGATCCTAG+CGG + chr5_4:19200224-19200243 None:intergenic 50.0%
CCGAACCAAACTAGTCGGTT+TGG + chr5_4:19200420-19200439 None:intergenic 50.0%
!! AGGGAAGTAACGGTTCGGTT+TGG + chr5_4:19200521-19200540 None:intergenic 50.0%
CGCATCATAAGAAACGTGCC+AGG - chr5_4:19200864-19200883 Msa0842210:intron 50.0%
CATAAGAAACGTGCCAGGCA+TGG - chr5_4:19200869-19200888 Msa0842210:intron 50.0%
GTCCCCAAACTCTACACCAT+TGG - chr5_4:19201056-19201075 Msa0842210:intron 50.0%
GGCCAATGGTGTAGAGTTTG+GGG + chr5_4:19201061-19201080 None:intergenic 50.0%
GGGCCAATGGTGTAGAGTTT+GGG + chr5_4:19201062-19201081 None:intergenic 50.0%
AGGGCCAATGGTGTAGAGTT+TGG + chr5_4:19201063-19201082 None:intergenic 50.0%
! GTATTGAGGTGGTGGTGAAG+AGG + chr5_4:19201083-19201102 None:intergenic 50.0%
GTGGGTGATTAGGCCAAACA+TGG - chr5_4:19201289-19201308 Msa0842210:intron 50.0%
!! CATGGCCTTGTGCTGGACAT+GGG + chr5_4:19198971-19198990 None:intergenic 55.0%
!! ACATGGCCTTGTGCTGGACA+TGG + chr5_4:19198972-19198991 None:intergenic 55.0%
! GCATCCAAGAGTGTGAGTCC+TGG - chr5_4:19201665-19201684 Msa0842210:CDS 55.0%
! TCCAAGAGTGTGAGTCCTGG+TGG - chr5_4:19201668-19201687 Msa0842210:CDS 55.0%
ACCACCAGGACTCACACTCT+TGG + chr5_4:19201672-19201691 None:intergenic 55.0%
CATCGTTCCTCACCACCGCT+AGG - chr5_4:19200206-19200225 Msa0842210:intron 60.0%
GAGATGGACGATCCTAGCGG+TGG + chr5_4:19200221-19200240 None:intergenic 60.0%
! GTGGTGGTGAAGAGGGCCAA+TGG + chr5_4:19201075-19201094 None:intergenic 60.0%
! TGTGGGGTGGGTTCCACAAG+AGG - chr5_4:19201373-19201392 Msa0842210:intron 60.0%
GGACGATCCTAGCGGTGGTG+AGG + chr5_4:19200216-19200235 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 19198921 19202107 19198921 ID=Msa0842210;Name=Msa0842210
chr5_4 mRNA 19198921 19202107 19198921 ID=Msa0842210-mRNA-1;Parent=Msa0842210;Name=Msa0842210-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|1|0.5|1|1|1|2|359|468
chr5_4 exon 19198921 19200181 19198921 ID=Msa0842210-mRNA-1:exon:8031;Parent=Msa0842210-mRNA-1
chr5_4 exon 19201603 19202107 19201603 ID=Msa0842210-mRNA-1:exon:8030;Parent=Msa0842210-mRNA-1
chr5_4 CDS 19201603 19202107 19201603 ID=Msa0842210-mRNA-1:cds;Parent=Msa0842210-mRNA-1
chr5_4 CDS 19199280 19200181 19199280 ID=Msa0842210-mRNA-1:cds;Parent=Msa0842210-mRNA-1
chr5_4 three_prime_UTR 19198921 19199279 19198921 ID=Msa0842210-mRNA-1:three_prime_utr;Parent=Msa0842210-mRNA-1
Gene Sequence

>Msa0842210

ATGGATATACAACCTAAGAAAAAATCCTTACCACATGTGCTAATCTTCCCATGTCCAGCACAAGGCCATGTAAATCCTATGCTAAAGCTAGCTGAACTTCTTGCTATTCAAAATCTCCATATAACTTTCCTCAACACAGAGTACATCCACAACCGTCTCATTAGTTTGAATGATGATATTCAAGCTCTTTTAGAATGTTACCCTAAGCTTCAATTCAAGACTATCTCTGATTTTCACAGTGAGGAGAAACATCCTGGATTTGGAGAAAAGGTAGGTGATGTAATTTTGTCACTGAGTTTGTATGGTAAGCCTTTTTTGAGAGATATAATTGTCTCTGAGAAAATAAGTTGCATTATTTTGGATGGAATATTTGGTGACCTTGCTACTGATTTGGCTGCTGAGTTTGGGATACAATTGATTCATTTTCGTACTGTTAGTGCTTGTTGCTTTTGGGCTTATTTATCTGTTCCAAAGCTTTCGGAGTGCAATGAACTTCCCATTAGAGGAGATGAGGACATGGATCGCATCATAAGAAACGTGCCAGGCATGGAAAATTTGCTTCGATGTAGAGATCTTCCAAGTTTCTGTAAAATGGATGATACCATATTAGACAAGGTTGTATTTCTGACCCAACAATCACTTAAAGGCAACGCATTAATACTCAACACGTTCGAGAATCTAGAATCCCCAGTACTCTCCCAAATTCGTCTTCAAGTCCCCAAACTCTACACCATTGGCCCTCTTCACCACCACCTCAATACAACAAAAAAATCATCATCATCATCCAAGAGCAATTTCTTCGAAGTGGATAGAACTTGCATGGTGTGGCTCGAATCTCAACCATTGAAATCAGTTGTATATGTTAGCTTTGGTAGCATCACCCCAATGAAGAGAGAAGAAATCATTGAGATTTGGCACGGTTTATTGAATAGCAAAAAACTATTTTTGTGGGTGATTAGGCCAAACATGGTACAAGAAAAAGGACTATTGAAGGAGCTTGAGGAAGGGACTACAAAAGAGAAAGGAATGATTGTGGGGTGGGTTCCACAAGAGGAAGTTTTGTCACACAGAGCAATTGGTGCTTTTTTGACACATAGTGGGTGGAACTCTACTTTGGAGAGTGTGATTTGTGGAGTGCCTATGATATGTTGGCCTTATTTTGCTGATCAACAAATTAATAGTAGGTTTGTGAGTGAGGTTTGGAGAATTGGGTTGGATATGAAGGATGTTTGTGATAGGAATGTTGTTGAGCATATGGTGAATGATGTTATGGTGAATAGGAATGAGGAGTTTGTAAAATCAGCCATGGATATGGCTAAGTTGGCATCCAAGAGTGTGAGTCCTGGTGGTTCTTCCTACAACAACTTCCAAGATTTGGTTGAGTATATAAGGTCTACTAGCCCATAA

Protein sequence

>Msa0842210

MDIQPKKKSLPHVLIFPCPAQGHVNPMLKLAELLAIQNLHITFLNTEYIHNRLISLNDDIQALLECYPKLQFKTISDFHSEEKHPGFGEKVGDVILSLSLYGKPFLRDIIVSEKISCIILDGIFGDLATDLAAEFGIQLIHFRTVSACCFWAYLSVPKLSECNELPIRGDEDMDRIIRNVPGMENLLRCRDLPSFCKMDDTILDKVVFLTQQSLKGNALILNTFENLESPVLSQIRLQVPKLYTIGPLHHHLNTTKKSSSSSKSNFFEVDRTCMVWLESQPLKSVVYVSFGSITPMKREEIIEIWHGLLNSKKLFLWVIRPNMVQEKGLLKELEEGTTKEKGMIVGWVPQEEVLSHRAIGAFLTHSGWNSTLESVICGVPMICWPYFADQQINSRFVSEVWRIGLDMKDVCDRNVVEHMVNDVMVNRNEEFVKSAMDMAKLASKSVSPGGSSYNNFQDLVEYIRSTSP*