Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322490 | sp|Q9LES3|AI5L2_ARATH | 54.426 | 305 | 112 | 8 | 23 | 322 | 15 | 297 | 2.87e-88 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322490 | G7L6Z1 | 92.857 | 322 | 14 | 1 | 1 | 322 | 1 | 313 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1322490 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012040 | Msa1322490 | 0.811186 | 7.938847e-51 | -8.615850e-47 |
| Msa0015390 | Msa1322490 | 0.802910 | 4.484178e-49 | -8.615850e-47 |
| Msa0052640 | Msa1322490 | 0.809108 | 2.226613e-50 | -8.615850e-47 |
| Msa0052770 | Msa1322490 | 0.816969 | 4.204105e-52 | -8.615850e-47 |
| Msa0057220 | Msa1322490 | 0.804377 | 2.224676e-49 | -8.615850e-47 |
| Msa0115270 | Msa1322490 | 0.815598 | 8.518834e-52 | -8.615850e-47 |
| Msa0119850 | Msa1322490 | 0.807592 | 4.687555e-50 | -8.615850e-47 |
| Msa0610430 | Msa1322490 | 0.833973 | 3.920493e-56 | -8.615850e-47 |
| Msa0660490 | Msa1322490 | 0.807546 | 4.794774e-50 | -8.615850e-47 |
| Msa0661190 | Msa1322490 | -0.807715 | 4.413733e-50 | -8.615850e-47 |
| Msa0663920 | Msa1322490 | 0.819720 | 1.001494e-52 | -8.615850e-47 |
| Msa0692830 | Msa1322490 | 0.824116 | 9.607246e-54 | -8.615850e-47 |
| Msa0692950 | Msa1322490 | 0.833983 | 3.898075e-56 | -8.615850e-47 |
| Msa0743720 | Msa1322490 | 0.830012 | 3.731703e-55 | -8.615850e-47 |
| Msa0771720 | Msa1322490 | 0.805794 | 1.123818e-49 | -8.615850e-47 |
| Msa0807470 | Msa1322490 | 0.803696 | 3.082276e-49 | -8.615850e-47 |
| Msa0824680 | Msa1322490 | 0.804465 | 2.131947e-49 | -8.615850e-47 |
| Msa0160550 | Msa1322490 | 0.835992 | 1.214933e-56 | -8.615850e-47 |
| Msa1293510 | Msa1322490 | 0.816702 | 4.825253e-52 | -8.615850e-47 |
| Msa1306800 | Msa1322490 | 0.800564 | 1.358511e-48 | -8.615850e-47 |
| Msa1306860 | Msa1322490 | 0.802065 | 6.694053e-49 | -8.615850e-47 |
| Msa1322490 | Msa1386780 | 0.806996 | 6.270344e-50 | -8.615850e-47 |
| Msa1322490 | Msa1419800 | -0.803196 | 3.911559e-49 | -8.615850e-47 |
| Msa1322490 | Msa1451550 | 0.815888 | 7.338810e-52 | -8.615850e-47 |
| Msa1322490 | Msa1454480 | 0.822763 | 1.990899e-53 | -8.615850e-47 |
| Msa0388050 | Msa1322490 | 0.801637 | 8.195158e-49 | -8.615850e-47 |
| Msa0436490 | Msa1322490 | -0.802295 | 6.003222e-49 | -8.615850e-47 |
| Msa0993290 | Msa1322490 | 0.814463 | 1.521322e-51 | -8.615850e-47 |
| Msa0993600 | Msa1322490 | 0.807948 | 3.939462e-50 | -8.615850e-47 |
| Msa0999430 | Msa1322490 | 0.805243 | 1.466801e-49 | -8.615850e-47 |
| Msa1014540 | Msa1322490 | 0.803403 | 3.544144e-49 | -8.615850e-47 |
| Msa1051200 | Msa1322490 | 0.808862 | 2.514151e-50 | -8.615850e-47 |
| Msa1087710 | Msa1322490 | 0.820493 | 6.661082e-53 | -8.615850e-47 |
| Msa0358170 | Msa1322490 | 0.820045 | 8.440605e-53 | -8.615850e-47 |
| Msa1173140 | Msa1322490 | 0.816364 | 5.745255e-52 | -8.615850e-47 |
| Msa1174040 | Msa1322490 | 0.806181 | 9.319013e-50 | -8.615850e-47 |
| Msa1188070 | Msa1322490 | 0.979992 | 3.341430e-149 | -8.615850e-47 |
| Msa1204090 | Msa1322490 | 0.803753 | 2.999604e-49 | -8.615850e-47 |
| Msa0504020 | Msa1322490 | 0.816157 | 6.389838e-52 | -8.615850e-47 |
| Msa0519000 | Msa1322490 | 0.812369 | 4.389633e-51 | -8.615850e-47 |
| Msa0540070 | Msa1322490 | 0.802620 | 5.145640e-49 | -8.615850e-47 |
| Msa0593650 | Msa1322490 | 0.808409 | 3.141444e-50 | -8.615850e-47 |
| Msa0884470 | Msa1322490 | 0.807420 | 5.099150e-50 | -8.615850e-47 |
| Msa0920870 | Msa1322490 | 0.817332 | 3.483986e-52 | -8.615850e-47 |
| Msa0944190 | Msa1322490 | 0.800005 | 1.765359e-48 | -8.615850e-47 |
| Msa0976670 | Msa1322490 | 0.807102 | 5.956248e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322490 | MtrunA17_Chr8g0355121 | 92.857 | 322 | 14 | 1 | 1 | 322 | 1 | 313 | 0.0 | 593 |
| Msa1322490 | MtrunA17_Chr3g0080341 | 64.396 | 323 | 108 | 4 | 6 | 322 | 1 | 322 | 1.36e-145 | 413 |
| Msa1322490 | MtrunA17_Chr7g0254991 | 47.605 | 334 | 144 | 8 | 6 | 322 | 1 | 320 | 2.88e-87 | 265 |
| Msa1322490 | MtrunA17_Chr6g0460301 | 49.398 | 332 | 142 | 7 | 6 | 322 | 1 | 321 | 5.66e-83 | 253 |
| Msa1322490 | MtrunA17_Chr4g0044771 | 36.023 | 347 | 141 | 11 | 23 | 301 | 17 | 350 | 2.82e-47 | 163 |
| Msa1322490 | MtrunA17_Chr5g0440841 | 54.902 | 153 | 62 | 3 | 1 | 150 | 1 | 149 | 1.55e-35 | 129 |
| Msa1322490 | MtrunA17_Chr5g0440841 | 61.364 | 88 | 33 | 1 | 235 | 322 | 183 | 269 | 1.43e-24 | 100 |
| Msa1322490 | MtrunA17_Chr7g0266211 | 32.000 | 350 | 147 | 8 | 30 | 294 | 45 | 388 | 8.26e-34 | 128 |
| Msa1322490 | MtrunA17_Chr2g0321411 | 35.439 | 285 | 125 | 12 | 27 | 294 | 11 | 253 | 2.85e-31 | 119 |
| Msa1322490 | MtrunA17_Chr3g0133971 | 48.529 | 136 | 62 | 3 | 12 | 144 | 14 | 144 | 1.17e-29 | 117 |
| Msa1322490 | MtrunA17_Chr3g0133971 | 63.768 | 69 | 22 | 1 | 229 | 297 | 333 | 398 | 2.44e-17 | 82.4 |
| Msa1322490 | MtrunA17_Chr2g0321381 | 34.164 | 281 | 153 | 8 | 26 | 294 | 24 | 284 | 1.07e-28 | 112 |
| Msa1322490 | MtrunA17_Chr5g0424871 | 31.313 | 297 | 163 | 8 | 16 | 273 | 4 | 298 | 3.91e-23 | 97.4 |
| Msa1322490 | MtrunA17_Chr4g0051101 | 53.521 | 71 | 29 | 1 | 238 | 304 | 117 | 187 | 1.54e-12 | 65.5 |
| Msa1322490 | MtrunA17_Chr5g0405951 | 30.328 | 244 | 102 | 11 | 102 | 297 | 1 | 224 | 1.86e-11 | 63.2 |
| Msa1322490 | MtrunA17_Chr1g0201751 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 6.85e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322490 | AT3G56850.1 | 54.426 | 305 | 112 | 8 | 23 | 322 | 15 | 297 | 2.91e-89 | 269 |
| Msa1322490 | AT2G41070.3 | 48.344 | 302 | 96 | 8 | 23 | 320 | 15 | 260 | 1.94e-73 | 228 |
| Msa1322490 | AT2G41070.1 | 48.344 | 302 | 96 | 8 | 23 | 320 | 15 | 260 | 1.94e-73 | 228 |
| Msa1322490 | AT2G41070.2 | 48.344 | 302 | 96 | 8 | 23 | 320 | 15 | 260 | 1.94e-73 | 228 |
| Msa1322490 | AT2G41070.4 | 48.344 | 302 | 96 | 8 | 23 | 320 | 24 | 269 | 2.21e-73 | 228 |
| Msa1322490 | AT2G41070.5 | 48.561 | 278 | 83 | 8 | 23 | 296 | 15 | 236 | 4.72e-65 | 205 |
| Msa1322490 | AT2G36270.1 | 32.367 | 414 | 159 | 13 | 23 | 322 | 36 | 442 | 1.59e-36 | 136 |
| Msa1322490 | AT2G36270.2 | 32.367 | 414 | 159 | 13 | 23 | 322 | 36 | 442 | 1.59e-36 | 136 |
| Msa1322490 | AT2G36270.3 | 32.723 | 382 | 143 | 10 | 23 | 297 | 36 | 410 | 2.58e-35 | 133 |
| Msa1322490 | AT3G44460.1 | 38.596 | 285 | 129 | 12 | 26 | 294 | 37 | 291 | 5.38e-29 | 114 |
| Msa1322490 | AT3G19290.2 | 46.429 | 140 | 56 | 3 | 24 | 144 | 34 | 173 | 1.60e-25 | 105 |
| Msa1322490 | AT3G19290.4 | 46.429 | 140 | 56 | 3 | 24 | 144 | 34 | 173 | 1.91e-25 | 105 |
| Msa1322490 | AT3G19290.4 | 59.016 | 61 | 22 | 1 | 236 | 296 | 340 | 397 | 1.21e-13 | 71.6 |
| Msa1322490 | AT3G19290.3 | 46.429 | 140 | 56 | 3 | 24 | 144 | 34 | 173 | 2.56e-25 | 105 |
| Msa1322490 | AT3G19290.3 | 59.016 | 61 | 22 | 1 | 236 | 296 | 340 | 397 | 2.01e-13 | 70.9 |
| Msa1322490 | AT3G19290.1 | 46.429 | 140 | 56 | 3 | 24 | 144 | 34 | 173 | 2.56e-25 | 105 |
| Msa1322490 | AT3G19290.1 | 59.016 | 61 | 22 | 1 | 236 | 296 | 340 | 397 | 2.04e-13 | 70.9 |
| Msa1322490 | AT3G19290.5 | 46.429 | 140 | 56 | 3 | 24 | 144 | 34 | 173 | 2.56e-25 | 105 |
| Msa1322490 | AT3G19290.5 | 59.016 | 61 | 22 | 1 | 236 | 296 | 340 | 397 | 2.04e-13 | 70.9 |
| Msa1322490 | AT4G34000.3 | 39.130 | 161 | 58 | 3 | 24 | 144 | 27 | 187 | 6.67e-24 | 101 |
| Msa1322490 | AT4G34000.3 | 55.294 | 85 | 36 | 2 | 234 | 317 | 357 | 440 | 3.45e-16 | 79.3 |
| Msa1322490 | AT4G34000.1 | 39.130 | 161 | 58 | 3 | 24 | 144 | 27 | 187 | 9.25e-24 | 101 |
| Msa1322490 | AT4G34000.1 | 64.706 | 68 | 22 | 2 | 234 | 301 | 357 | 422 | 6.17e-16 | 78.6 |
| Msa1322490 | AT4G34000.4 | 39.130 | 161 | 58 | 3 | 24 | 144 | 27 | 187 | 9.25e-24 | 101 |
| Msa1322490 | AT4G34000.4 | 64.706 | 68 | 22 | 2 | 234 | 301 | 357 | 422 | 6.17e-16 | 78.6 |
| Msa1322490 | AT4G34000.2 | 39.130 | 161 | 58 | 3 | 24 | 144 | 27 | 187 | 9.25e-24 | 101 |
| Msa1322490 | AT4G34000.2 | 64.706 | 68 | 22 | 2 | 234 | 301 | 357 | 422 | 6.17e-16 | 78.6 |
| Msa1322490 | AT5G42910.1 | 29.301 | 372 | 165 | 16 | 23 | 319 | 19 | 367 | 8.81e-23 | 97.8 |
| Msa1322490 | AT1G45249.10 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 2.14e-21 | 94.0 |
| Msa1322490 | AT1G45249.5 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 2.14e-21 | 94.0 |
| Msa1322490 | AT1G45249.7 | 34.392 | 189 | 91 | 5 | 24 | 190 | 36 | 213 | 3.39e-21 | 94.0 |
| Msa1322490 | AT1G45249.7 | 52.632 | 95 | 33 | 2 | 236 | 322 | 341 | 431 | 1.16e-17 | 83.6 |
| Msa1322490 | AT1G45249.6 | 34.392 | 189 | 91 | 5 | 24 | 190 | 36 | 213 | 3.39e-21 | 94.0 |
| Msa1322490 | AT1G45249.6 | 52.632 | 95 | 33 | 2 | 236 | 322 | 341 | 431 | 1.16e-17 | 83.6 |
| Msa1322490 | AT1G45249.4 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 3.57e-21 | 93.6 |
| Msa1322490 | AT1G45249.8 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 3.57e-21 | 93.6 |
| Msa1322490 | AT1G45249.2 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 3.57e-21 | 93.6 |
| Msa1322490 | AT1G45249.9 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 3.57e-21 | 93.6 |
| Msa1322490 | AT1G45249.1 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 3.61e-21 | 93.6 |
| Msa1322490 | AT1G45249.1 | 52.632 | 95 | 33 | 2 | 236 | 322 | 326 | 416 | 7.72e-18 | 84.0 |
| Msa1322490 | AT1G45249.3 | 34.392 | 189 | 91 | 5 | 24 | 190 | 21 | 198 | 5.78e-21 | 93.2 |
| Msa1322490 | AT1G45249.3 | 47.170 | 106 | 33 | 3 | 236 | 322 | 326 | 427 | 5.49e-15 | 75.5 |
| Msa1322490 | AT4G35900.1 | 30.739 | 257 | 110 | 12 | 101 | 322 | 62 | 285 | 5.95e-18 | 82.8 |
| Msa1322490 | AT5G44080.1 | 33.047 | 233 | 105 | 10 | 100 | 320 | 120 | 313 | 2.26e-17 | 81.6 |
| Msa1322490 | AT1G49720.1 | 46.875 | 96 | 39 | 2 | 236 | 322 | 300 | 392 | 4.09e-14 | 72.8 |
| Msa1322490 | AT1G49720.3 | 46.875 | 96 | 39 | 2 | 236 | 322 | 300 | 392 | 4.09e-14 | 72.8 |
| Msa1322490 | AT2G17770.2 | 48.276 | 87 | 42 | 2 | 236 | 322 | 112 | 195 | 6.78e-14 | 69.7 |
| Msa1322490 | AT1G49720.2 | 62.295 | 61 | 20 | 1 | 236 | 296 | 300 | 357 | 2.87e-13 | 70.5 |
| Msa1322490 | AT1G03970.1 | 27.928 | 222 | 100 | 6 | 100 | 310 | 85 | 257 | 1.34e-11 | 64.3 |
Find 98 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACAGTGGTAATTGATAAA+TGG | 0.173245 | 8_4:+29603739 | Msa1322490:exon |
| ATTCGACGTAGCTGATATTT+AGG | 0.229724 | 8_4:-29605638 | None:intergenic |
| GATGACATTGGAGGATTTCT+TGG | 0.249290 | 8_4:+29604144 | Msa1322490:CDS |
| ATCTACAAACCTCTACTTAT+AGG | 0.296760 | 8_4:-29605690 | None:intergenic |
| GGCATTGGGTGCACCTCTAA+TGG | 0.309529 | 8_4:+29604414 | Msa1322490:CDS |
| AAGGAGTACTCCGGAGGATA+TGG | 0.328607 | 8_4:+29604471 | Msa1322490:CDS |
| CAAAATCAATTAGGTGACTT+AGG | 0.335660 | 8_4:+29603872 | Msa1322490:CDS |
| CGAGAGAGACAAACTACTTT+AGG | 0.337274 | 8_4:+29604118 | Msa1322490:CDS |
| CGCAGATGCCTGGAAGAAAA+AGG | 0.341495 | 8_4:+29604452 | Msa1322490:CDS |
| GATGAAGTTCAAAATCAATT+AGG | 0.351054 | 8_4:+29603863 | Msa1322490:CDS |
| CTGTTTCCGTGCTCTTGAAC+GGG | 0.379424 | 8_4:-29604551 | None:intergenic |
| GGTTTGTAGATATAAGAATC+AGG | 0.382447 | 8_4:+29605702 | Msa1322490:three_prime_UTR |
| GCCTTCATTGTCCGTATTCG+TGG | 0.383060 | 8_4:-29603963 | None:intergenic |
| TGAGGCTGACACCTGCCTTT+TGG | 0.384315 | 8_4:+29605748 | Msa1322490:three_prime_UTR |
| GCATTGGGTGCACCTCTAAT+GGG | 0.388776 | 8_4:+29604415 | Msa1322490:CDS |
| AACAGTGGTAATTGATAAAT+GGG | 0.393072 | 8_4:+29603740 | Msa1322490:exon |
| CCGTTCAAGAGCACGGAAAC+AGG | 0.394263 | 8_4:+29604552 | Msa1322490:CDS |
| TCTGACACAGTCCCCATTAG+AGG | 0.402141 | 8_4:-29604427 | None:intergenic |
| TCTACAACGTCAAGCTAGTC+TGG | 0.406297 | 8_4:+29604009 | Msa1322490:CDS |
| TCTAGGAACAGGGATCAAAT+TGG | 0.411529 | 8_4:+29603681 | Msa1322490:intron |
| CATTGTCCGTATTCGTGGAC+TGG | 0.421785 | 8_4:-29603958 | None:intergenic |
| AGAGGACTGTGGATGAGGTT+TGG | 0.422682 | 8_4:+29604053 | Msa1322490:CDS |
| TGATATTTAGGTTCGGCAAT+TGG | 0.425901 | 8_4:-29605626 | None:intergenic |
| TCTAGGTTCATACTGCTTAG+TGG | 0.432596 | 8_4:-29603899 | None:intergenic |
| AAAATCAATTAGGTGACTTA+GGG | 0.436185 | 8_4:+29603873 | Msa1322490:CDS |
| CGAAGCGAACCTTTGTTTGT+CGG | 0.442161 | 8_4:-29602872 | None:intergenic |
| TCCGTTTGCAGATAGTCATA+TGG | 0.455759 | 8_4:+29604393 | Msa1322490:CDS |
| AGAAAAGGATGATCAAGAAT+CGG | 0.457820 | 8_4:+29604518 | Msa1322490:CDS |
| AAATAAAATTAACTCATGAT+TGG | 0.459209 | 8_4:-29605828 | None:intergenic |
| GCAGATAGTCATATGGCATT+GGG | 0.461753 | 8_4:+29604400 | Msa1322490:CDS |
| CTGTTGAGAGAAGGCAGAAA+AGG | 0.461801 | 8_4:+29604503 | Msa1322490:CDS |
| TGCAGATAGTCATATGGCAT+TGG | 0.465956 | 8_4:+29604399 | Msa1322490:CDS |
| CCTGTTTCCGTGCTCTTGAA+CGG | 0.468292 | 8_4:-29604552 | None:intergenic |
| GTGTCAGATACGCAGATGCC+TGG | 0.469471 | 8_4:+29604442 | Msa1322490:CDS |
| GGTTCGGCAATTGGTGTACA+TGG | 0.471070 | 8_4:-29605617 | None:intergenic |
| CAGCAAGAGGACTGTGGATG+AGG | 0.475392 | 8_4:+29604048 | Msa1322490:CDS |
| TAAATGGGAACTCAGACAAT+GGG | 0.478433 | 8_4:+29603755 | Msa1322490:exon |
| GAGGATTTCTTGGTGAAAGC+AGG | 0.483426 | 8_4:+29604154 | Msa1322490:CDS |
| GGGTCTCAAGGTGGTGGAGA+TGG | 0.487387 | 8_4:+29603776 | Msa1322490:CDS |
| ATAAATGGGAACTCAGACAA+TGG | 0.492628 | 8_4:+29603754 | Msa1322490:exon |
| TGATACTGCCACATTTGAAT+CGG | 0.495093 | 8_4:-29604230 | None:intergenic |
| TTTAGGAGAGATGACATTGG+AGG | 0.495208 | 8_4:+29604135 | Msa1322490:CDS |
| AGTATCACAGTTTCCTCCGC+AGG | 0.498543 | 8_4:+29604246 | Msa1322490:CDS |
| TAAAGTTTCACGCCTGGAAG+AGG | 0.502778 | 8_4:+29604700 | Msa1322490:CDS |
| GTTTGTAGATATAAGAATCA+GGG | 0.508543 | 8_4:+29605703 | Msa1322490:three_prime_UTR |
| ACGTAGCTGATATTTAGGTT+CGG | 0.511389 | 8_4:-29605633 | None:intergenic |
| ATCGGCCGCAGCCGTAGAAT+CGG | 0.519274 | 8_4:-29604212 | None:intergenic |
| GCCATATGACTATCTGCAAA+CGG | 0.520435 | 8_4:-29604394 | None:intergenic |
| TAAAACGAATACCGATTCTA+CGG | 0.520984 | 8_4:+29604201 | Msa1322490:CDS |
| GAAAAGGATGATCAAGAATC+GGG | 0.521274 | 8_4:+29604519 | Msa1322490:CDS |
| ACTCAGACAATGGGGTCTCA+AGG | 0.525496 | 8_4:+29603764 | Msa1322490:CDS |
| TGTTGTAGATGCTGATATTG+TGG | 0.526222 | 8_4:-29604292 | None:intergenic |
| AGTGAACCAGTCCACGAATA+CGG | 0.529125 | 8_4:+29603952 | Msa1322490:CDS |
| CAAGGTGGTGGAGATGGTAG+TGG | 0.530920 | 8_4:+29603782 | Msa1322490:CDS |
| GCATCTACAACAAAGTTCCA+TGG | 0.531471 | 8_4:+29604303 | Msa1322490:CDS |
| GTCTTCTCCACCATATCCTC+CGG | 0.535473 | 8_4:-29604481 | None:intergenic |
| CATATTCCAGAGATACCAAA+AGG | 0.538582 | 8_4:-29605763 | None:intergenic |
| TTTCTCTCTCCGACAAACAA+AGG | 0.542889 | 8_4:+29602863 | Msa1322490:five_prime_UTR |
| AGTTTCCTCCGCAGGGTCAG+TGG | 0.546455 | 8_4:+29604254 | Msa1322490:CDS |
| CATCTACAACAAAGTTCCAT+GGG | 0.551430 | 8_4:+29604304 | Msa1322490:CDS |
| TTCCAGAGATACCAAAAGGC+AGG | 0.552038 | 8_4:-29605759 | None:intergenic |
| GGGGATTTATATGCCTAGCC+AGG | 0.552814 | 8_4:+29604324 | Msa1322490:CDS |
| TAAAAGCTGCATTCAGCAAG+AGG | 0.554122 | 8_4:+29604035 | Msa1322490:CDS |
| AGATGCTGATATTGTGGTTG+CGG | 0.557999 | 8_4:-29604286 | None:intergenic |
| GGCTGTGCTATAACCTGGCT+AGG | 0.560978 | 8_4:-29604337 | None:intergenic |
| CAAAGAAGAGTGACGAACAA+AGG | 0.565370 | 8_4:-29602791 | None:intergenic |
| ACAATGGGGTCTCAAGGTGG+TGG | 0.565619 | 8_4:+29603770 | Msa1322490:CDS |
| GGAGATTAAAGTTTCACGCC+TGG | 0.572833 | 8_4:+29604694 | Msa1322490:CDS |
| ACAGGCTTACACAAATGAGT+TGG | 0.573200 | 8_4:+29604673 | Msa1322490:intron |
| TATAGCACAGCCGTTACACA+TGG | 0.574412 | 8_4:+29604348 | Msa1322490:CDS |
| TCCACGAATACGGACAATGA+AGG | 0.580287 | 8_4:+29603962 | Msa1322490:CDS |
| TGAAATGTTGAGGAAACGAA+AGG | 0.582873 | 8_4:+29604727 | Msa1322490:CDS |
| AAGAGGAAAATGAAATGTTG+AGG | 0.591873 | 8_4:+29604717 | Msa1322490:CDS |
| CTGCTGCCCGTTCAAGAGCA+CGG | 0.591970 | 8_4:+29604545 | Msa1322490:CDS |
| GAATACCGATTCTACGGCTG+CGG | 0.597719 | 8_4:+29604207 | Msa1322490:CDS |
| TGGAGAAGACTGTTGAGAGA+AGG | 0.597925 | 8_4:+29604494 | Msa1322490:CDS |
| GAGTACTCCGGAGGATATGG+TGG | 0.597936 | 8_4:+29604474 | Msa1322490:CDS |
| GTGGAGATGGTAGTGGAAGA+CGG | 0.609087 | 8_4:+29603789 | Msa1322490:CDS |
| GCACCTGACCCCATGTGTAA+CGG | 0.611183 | 8_4:-29604358 | None:intergenic |
| TTACTTTGTCTCTAGGAACA+GGG | 0.611259 | 8_4:+29603671 | Msa1322490:intron |
| CACAACTCCACTCTCTTGTG+AGG | 0.615377 | 8_4:+29603813 | Msa1322490:CDS |
| ATCTGTGTACCTATAAGTAG+AGG | 0.617878 | 8_4:+29605681 | Msa1322490:three_prime_UTR |
| TAGGTACACAGATCTCAGAA+TGG | 0.634421 | 8_4:-29605671 | None:intergenic |
| CATTGGGTGCACCTCTAATG+GGG | 0.635245 | 8_4:+29604416 | Msa1322490:CDS |
| TACTTTAGGAGAGATGACAT+TGG | 0.639124 | 8_4:+29604132 | Msa1322490:CDS |
| GGCTGCGGCCGATTCAAATG+TGG | 0.639880 | 8_4:+29604222 | Msa1322490:CDS |
| TACTGTAACCACTGACCCTG+CGG | 0.642687 | 8_4:-29604262 | None:intergenic |
| TGTAACCACTGACCCTGCGG+AGG | 0.649342 | 8_4:-29604259 | None:intergenic |
| GCTAGGCATATAAATCCCCA+TGG | 0.652039 | 8_4:-29604320 | None:intergenic |
| TAGCACAGCCGTTACACATG+GGG | 0.656286 | 8_4:+29604350 | Msa1322490:CDS |
| ATAGCACAGCCGTTACACAT+GGG | 0.668336 | 8_4:+29604349 | Msa1322490:CDS |
| ATGAAGTGAATTGTTAACAG+TGG | 0.684459 | 8_4:+29603725 | Msa1322490:five_prime_UTR |
| CAGACAATGGGGTCTCAAGG+TGG | 0.688721 | 8_4:+29603767 | Msa1322490:CDS |
| TGCATTCAGCAAGAGGACTG+TGG | 0.691129 | 8_4:+29604042 | Msa1322490:CDS |
| AAATGGGAACTCAGACAATG+GGG | 0.712282 | 8_4:+29603756 | Msa1322490:exon |
| ATTACTGAAGAACTTAACAG+AGG | 0.717363 | 8_4:-29605800 | None:intergenic |
| ATCTACAACAAAGTTCCATG+GGG | 0.739377 | 8_4:+29604305 | Msa1322490:CDS |
| CCAACAAAAGAAAGACAACG+AGG | 0.748926 | 8_4:+29604084 | Msa1322490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTTAGGATTAAAT+TGG | + | chr8_4:29603594-29603613 | Msa1322490:intron | 10.0% |
| !!! | ATTTTTTTTAGGATTAAATT+GGG | + | chr8_4:29603595-29603614 | Msa1322490:intron | 10.0% |
| !!! | AAAGTTTTAATTTTGAATTC+TGG | + | chr8_4:29603135-29603154 | Msa1322490:intron | 15.0% |
| !!! | AAGTTTTAATTTTGAATTCT+GGG | + | chr8_4:29603136-29603155 | Msa1322490:intron | 15.0% |
| !!! | AATTTGGTACTATTTTTTTT+AGG | + | chr8_4:29603584-29603603 | Msa1322490:intron | 15.0% |
| !! | TTGAAATTATAAGGTTTAAT+TGG | + | chr8_4:29604762-29604781 | Msa1322490:intron | 15.0% |
| !!! | AATTAGTGGATTATTTTATT+AGG | + | chr8_4:29605108-29605127 | Msa1322490:intron | 15.0% |
| !! | ATAATCTGATAATATATAAG+AGG | - | chr8_4:29605551-29605570 | None:intergenic | 15.0% |
| !! | GTAACATAAATTAAGAAAAG+AGG | - | chr8_4:29602909-29602928 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTCTGTGAAATT+AGG | + | chr8_4:29603241-29603260 | Msa1322490:intron | 20.0% |
| !!! | AATTTGTGTGTTTTGAAAAT+GGG | + | chr8_4:29603295-29603314 | Msa1322490:intron | 20.0% |
| !! | TCTTTAGATTACTTCAAAAA+GGG | - | chr8_4:29603399-29603418 | None:intergenic | 20.0% |
| !! | TTCTTTAGATTACTTCAAAA+AGG | - | chr8_4:29603400-29603419 | None:intergenic | 20.0% |
| !! | AAGTAATCTAAAGAAAGAAA+TGG | + | chr8_4:29603405-29603424 | Msa1322490:intron | 20.0% |
| !! | CAAAAACCAATCAAATAATA+AGG | - | chr8_4:29604613-29604632 | None:intergenic | 20.0% |
| !!! | AAAGTTATTATTCAGGTTTA+GGG | - | chr8_4:29604648-29604667 | None:intergenic | 20.0% |
| !!! | TAAAGTTATTATTCAGGTTT+AGG | - | chr8_4:29604649-29604668 | None:intergenic | 20.0% |
| !!! | GTTTGTTAAAGTTATTATTC+AGG | - | chr8_4:29604655-29604674 | None:intergenic | 20.0% |
| !! | GAATAATAACTTTAACAAAC+AGG | + | chr8_4:29604655-29604674 | Msa1322490:intron | 20.0% |
| !!! | TAGTTTGTATTGTACATTTT+TGG | + | chr8_4:29604848-29604867 | Msa1322490:intron | 20.0% |
| !! | TATAAGAGTTAAAGAGAAAA+AGG | - | chr8_4:29605011-29605030 | None:intergenic | 20.0% |
| !! | TTCTCTTTAACTCTTATAAT+TGG | + | chr8_4:29605013-29605032 | Msa1322490:intron | 20.0% |
| !! | TTGTTAGATTTGAATGAAAT+AGG | + | chr8_4:29605036-29605055 | Msa1322490:intron | 20.0% |
| !!! | ATTTTTACCTGTTAAAATCA+TGG | + | chr8_4:29605484-29605503 | Msa1322490:intron | 20.0% |
| !!! | TTTTTACCTGTTAAAATCAT+GGG | + | chr8_4:29605485-29605504 | Msa1322490:intron | 20.0% |
| !!! | AATAGAAGCTTTTTCTGTAA+TGG | + | chr8_4:29603011-29603030 | Msa1322490:intron | 25.0% |
| !!! | ATAGAAGCTTTTTCTGTAAT+GGG | + | chr8_4:29603012-29603031 | Msa1322490:intron | 25.0% |
| !! | AATTGTGATTGAGATGTTTT+TGG | + | chr8_4:29603050-29603069 | Msa1322490:intron | 25.0% |
| !! | TGAAATTAGGAAAATGGTTT+TGG | + | chr8_4:29603254-29603273 | Msa1322490:intron | 25.0% |
| !! | GAAATTAGGAAAATGGTTTT+GGG | + | chr8_4:29603255-29603274 | Msa1322490:intron | 25.0% |
| !!! | CAATTTGTGTGTTTTGAAAA+TGG | + | chr8_4:29603294-29603313 | Msa1322490:intron | 25.0% |
| !!! | ATTTGTGTGTTTTGAAAATG+GGG | + | chr8_4:29603296-29603315 | Msa1322490:intron | 25.0% |
| ! | TAAGAGACTAAATTATTGTG+AGG | - | chr8_4:29603463-29603482 | None:intergenic | 25.0% |
| !! | TTTCTTTTTACTTTGTCTCT+AGG | + | chr8_4:29603664-29603683 | Msa1322490:intron | 25.0% |
| ! | TAACAGTGGTAATTGATAAA+TGG | + | chr8_4:29603739-29603758 | Msa1322490:exon | 25.0% |
| ! | AACAGTGGTAATTGATAAAT+GGG | + | chr8_4:29603740-29603759 | Msa1322490:exon | 25.0% |
| ! | GATGAAGTTCAAAATCAATT+AGG | + | chr8_4:29603863-29603882 | Msa1322490:CDS | 25.0% |
| ! | AAAATCAATTAGGTGACTTA+GGG | + | chr8_4:29603873-29603892 | Msa1322490:CDS | 25.0% |
| !!! | GATTCTGCTTTGAAATTATA+AGG | + | chr8_4:29604753-29604772 | Msa1322490:intron | 25.0% |
| ! | TTATAATTTCAGCACAAGAT+AGG | + | chr8_4:29604872-29604891 | Msa1322490:intron | 25.0% |
| ! | ACCAAGTAAAGATTAATTAG+TGG | + | chr8_4:29605094-29605113 | Msa1322490:intron | 25.0% |
| ! | TCCACTAATTAATCTTTACT+TGG | - | chr8_4:29605098-29605117 | None:intergenic | 25.0% |
| ! | TTTGTCATTAAGAATTGTTC+AGG | + | chr8_4:29605167-29605186 | Msa1322490:intron | 25.0% |
| ! | ATGGTTGTTTACTTGATATT+GGG | + | chr8_4:29605319-29605338 | Msa1322490:intron | 25.0% |
| ! | GATAGAGACTTTATATAGTA+TGG | - | chr8_4:29605432-29605451 | None:intergenic | 25.0% |
| ! | TAAGTTAGCATGTATAAAAG+AGG | - | chr8_4:29605520-29605539 | None:intergenic | 25.0% |
| ! | GTTTGTAGATATAAGAATCA+GGG | + | chr8_4:29605703-29605722 | Msa1322490:three_prime_UTR | 25.0% |
| !! | TTTTCTTGTAGTTTAATGTG+AGG | + | chr8_4:29605730-29605749 | Msa1322490:three_prime_UTR | 25.0% |
| ATTATCTTCTGTGCATGAAT+TGG | + | chr8_4:29603170-29603189 | Msa1322490:intron | 30.0% | |
| GTTCTGTGAAATTAGGAAAA+TGG | + | chr8_4:29603248-29603267 | Msa1322490:intron | 30.0% | |
| !!! | TGTTTTGAAAATGGGGTTTT+GGG | + | chr8_4:29603303-29603322 | Msa1322490:intron | 30.0% |
| !! | TTTTGAGTAAAGACCCATTT+TGG | + | chr8_4:29603436-29603455 | Msa1322490:intron | 30.0% |
| ATTATTGTGAGGACCAAAAT+GGG | - | chr8_4:29603452-29603471 | None:intergenic | 30.0% | |
| AATTATTGTGAGGACCAAAA+TGG | - | chr8_4:29603453-29603472 | None:intergenic | 30.0% | |
| GACTTCATATAGAAACTGTT+GGG | - | chr8_4:29603509-29603528 | None:intergenic | 30.0% | |
| AGACTTCATATAGAAACTGT+TGG | - | chr8_4:29603510-29603529 | None:intergenic | 30.0% | |
| AACAGTTTCTATATGAAGTC+TGG | + | chr8_4:29603509-29603528 | Msa1322490:intron | 30.0% | |
| ATGAAGTGAATTGTTAACAG+TGG | + | chr8_4:29603725-29603744 | Msa1322490:five_prime_UTR | 30.0% | |
| CAAAATCAATTAGGTGACTT+AGG | + | chr8_4:29603872-29603891 | Msa1322490:CDS | 30.0% | |
| !! | TAAAACGAATACCGATTCTA+CGG | + | chr8_4:29604201-29604220 | Msa1322490:CDS | 30.0% |
| AGAAAAGGATGATCAAGAAT+CGG | + | chr8_4:29604518-29604537 | Msa1322490:CDS | 30.0% | |
| GCAAGTCCTTATTATTTGAT+TGG | + | chr8_4:29604604-29604623 | Msa1322490:intron | 30.0% | |
| AAGAGGAAAATGAAATGTTG+AGG | + | chr8_4:29604717-29604736 | Msa1322490:CDS | 30.0% | |
| AATACAAACTACTCAATCTG+GGG | - | chr8_4:29604839-29604858 | None:intergenic | 30.0% | |
| CAATACAAACTACTCAATCT+GGG | - | chr8_4:29604840-29604859 | None:intergenic | 30.0% | |
| ACAATACAAACTACTCAATC+TGG | - | chr8_4:29604841-29604860 | None:intergenic | 30.0% | |
| ! | ATACAATTCTCTGCATTTTC+TGG | + | chr8_4:29604918-29604937 | Msa1322490:intron | 30.0% |
| AAGAGAAAAAGGATGCATAA+TGG | - | chr8_4:29605000-29605019 | None:intergenic | 30.0% | |
| !! | AATCTTTACTTGGTGTATCA+GGG | - | chr8_4:29605088-29605107 | None:intergenic | 30.0% |
| !! | TAATCTTTACTTGGTGTATC+AGG | - | chr8_4:29605089-29605108 | None:intergenic | 30.0% |
| CAAAGTAAAAGATAGAGCAT+AGG | - | chr8_4:29605151-29605170 | None:intergenic | 30.0% | |
| !!! | GTTAGTTCTGATACAACTTT+TGG | + | chr8_4:29605246-29605265 | Msa1322490:intron | 30.0% |
| GATGGTTGTTTACTTGATAT+TGG | + | chr8_4:29605318-29605337 | Msa1322490:intron | 30.0% | |
| TTACTTGATATTGGGTGATT+TGG | + | chr8_4:29605327-29605346 | Msa1322490:intron | 30.0% | |
| CATTCAATTAGCAGTATTTG+TGG | + | chr8_4:29605387-29605406 | Msa1322490:intron | 30.0% | |
| ATATATGCACATTGTATCCA+TGG | + | chr8_4:29605459-29605478 | Msa1322490:intron | 30.0% | |
| TTAACAGGTAAAAATGACCA+TGG | - | chr8_4:29605479-29605498 | None:intergenic | 30.0% | |
| !! | TTTGTTCCCATGATTTTAAC+AGG | - | chr8_4:29605494-29605513 | None:intergenic | 30.0% |
| ATCTACAAACCTCTACTTAT+AGG | - | chr8_4:29605693-29605712 | None:intergenic | 30.0% | |
| GGTTTGTAGATATAAGAATC+AGG | + | chr8_4:29605702-29605721 | Msa1322490:three_prime_UTR | 30.0% | |
| ATTACTGAAGAACTTAACAG+AGG | - | chr8_4:29605803-29605822 | None:intergenic | 30.0% | |
| ATTCAACAGTGACACTGAAT+TGG | + | chr8_4:29603075-29603094 | Msa1322490:intron | 35.0% | |
| TTCATGCACAGAAGATAATG+AGG | - | chr8_4:29603169-29603188 | None:intergenic | 35.0% | |
| !!! | GTGTTTTGAAAATGGGGTTT+TGG | + | chr8_4:29603302-29603321 | Msa1322490:intron | 35.0% |
| ! | TTGTTTGACTTTGCATGCAA+AGG | + | chr8_4:29603356-29603375 | Msa1322490:intron | 35.0% |
| ! | TGTTTGACTTTGCATGCAAA+GGG | + | chr8_4:29603357-29603376 | Msa1322490:intron | 35.0% |
| AGAAACTGTTGGGACTAATT+TGG | - | chr8_4:29603499-29603518 | None:intergenic | 35.0% | |
| ! | AGTCTGGTTCATTATAACGA+AGG | + | chr8_4:29603525-29603544 | Msa1322490:intron | 35.0% |
| ! | GTCTGGTTCATTATAACGAA+GGG | + | chr8_4:29603526-29603545 | Msa1322490:intron | 35.0% |
| TTCTCCGACATTGTCAAATT+GGG | - | chr8_4:29603563-29603582 | None:intergenic | 35.0% | |
| ATTCTCCGACATTGTCAAAT+TGG | - | chr8_4:29603564-29603583 | None:intergenic | 35.0% | |
| GACAATGTCGGAGAATAATT+TGG | + | chr8_4:29603568-29603587 | Msa1322490:intron | 35.0% | |
| AAAATCGTCAGGGATCAAAT+TGG | + | chr8_4:29603625-29603644 | Msa1322490:intron | 35.0% | |
| AAATCGTCAGGGATCAAATT+GGG | + | chr8_4:29603626-29603645 | Msa1322490:intron | 35.0% | |
| ! | TTTACTTTGTCTCTAGGAAC+AGG | + | chr8_4:29603670-29603689 | Msa1322490:intron | 35.0% |
| ! | TTACTTTGTCTCTAGGAACA+GGG | + | chr8_4:29603671-29603690 | Msa1322490:intron | 35.0% |
| ATAAATGGGAACTCAGACAA+TGG | + | chr8_4:29603754-29603773 | Msa1322490:exon | 35.0% | |
| TAAATGGGAACTCAGACAAT+GGG | + | chr8_4:29603755-29603774 | Msa1322490:exon | 35.0% | |
| ! | ACGAGCTTCTGAAAAATGTA+TGG | + | chr8_4:29603921-29603940 | Msa1322490:CDS | 35.0% |
| ! | TACTTTAGGAGAGATGACAT+TGG | + | chr8_4:29604132-29604151 | Msa1322490:CDS | 35.0% |
| TGATACTGCCACATTTGAAT+CGG | - | chr8_4:29604233-29604252 | None:intergenic | 35.0% | |
| TGTTGTAGATGCTGATATTG+TGG | - | chr8_4:29604295-29604314 | None:intergenic | 35.0% | |
| CATCTACAACAAAGTTCCAT+GGG | + | chr8_4:29604304-29604323 | Msa1322490:CDS | 35.0% | |
| ATCTACAACAAAGTTCCATG+GGG | + | chr8_4:29604305-29604324 | Msa1322490:CDS | 35.0% | |
| GAAAAGGATGATCAAGAATC+GGG | + | chr8_4:29604519-29604538 | Msa1322490:CDS | 35.0% | |
| ! | ACATTTCATTTTCCTCTTCC+AGG | - | chr8_4:29604715-29604734 | None:intergenic | 35.0% |
| TGAAATGTTGAGGAAACGAA+AGG | + | chr8_4:29604727-29604746 | Msa1322490:CDS | 35.0% | |
| ! | TCTCTGCATTTTCTGGATTA+AGG | + | chr8_4:29604925-29604944 | Msa1322490:intron | 35.0% |
| TTGGATTATTCTGCTCTCAA+TGG | + | chr8_4:29605265-29605284 | Msa1322490:intron | 35.0% | |
| ! | AAATATCTGCTGCTTCATGA+TGG | + | chr8_4:29605300-29605319 | Msa1322490:intron | 35.0% |
| AATATTTGTCCTCAACATGC+AGG | + | chr8_4:29605577-29605596 | Msa1322490:intron | 35.0% | |
| ! | TGATATTTAGGTTCGGCAAT+TGG | - | chr8_4:29605629-29605648 | None:intergenic | 35.0% |
| ! | ACGTAGCTGATATTTAGGTT+CGG | - | chr8_4:29605636-29605655 | None:intergenic | 35.0% |
| ATTCGACGTAGCTGATATTT+AGG | - | chr8_4:29605641-29605660 | None:intergenic | 35.0% | |
| ATCTGTGTACCTATAAGTAG+AGG | + | chr8_4:29605681-29605700 | Msa1322490:three_prime_UTR | 35.0% | |
| CATATTCCAGAGATACCAAA+AGG | - | chr8_4:29605766-29605785 | None:intergenic | 35.0% | |
| CAAAGAAGAGTGACGAACAA+AGG | - | chr8_4:29602794-29602813 | None:intergenic | 40.0% | |
| GAGAGAGAAAAACATCGATC+TGG | - | chr8_4:29602853-29602872 | None:intergenic | 40.0% | |
| TTTCTCTCTCCGACAAACAA+AGG | + | chr8_4:29602863-29602882 | Msa1322490:five_prime_UTR | 40.0% | |
| CTGAATTGGTTGCATGCAAA+TGG | + | chr8_4:29603089-29603108 | Msa1322490:intron | 40.0% | |
| !!! | AATGGGGTTTTGGGTTTCAA+AGG | + | chr8_4:29603312-29603331 | Msa1322490:intron | 40.0% |
| TGTCCCCAATTTGACAATGT+CGG | + | chr8_4:29603556-29603575 | Msa1322490:intron | 40.0% | |
| TCTCCGACATTGTCAAATTG+GGG | - | chr8_4:29603562-29603581 | None:intergenic | 40.0% | |
| TCTAGGAACAGGGATCAAAT+TGG | + | chr8_4:29603681-29603700 | Msa1322490:intron | 40.0% | |
| AAATGGGAACTCAGACAATG+GGG | + | chr8_4:29603756-29603775 | Msa1322490:exon | 40.0% | |
| ! | AATTTTGCCTCACAAGAGAG+TGG | - | chr8_4:29603823-29603842 | None:intergenic | 40.0% |
| TCTAGGTTCATACTGCTTAG+TGG | - | chr8_4:29603902-29603921 | None:intergenic | 40.0% | |
| !! | CATTTTTCAGAAGCTCGTCT+AGG | - | chr8_4:29603919-29603938 | None:intergenic | 40.0% |
| TAAAAGCTGCATTCAGCAAG+AGG | + | chr8_4:29604035-29604054 | Msa1322490:CDS | 40.0% | |
| ! | CCTCGTTGTCTTTCTTTTGT+TGG | - | chr8_4:29604087-29604106 | None:intergenic | 40.0% |
| CCAACAAAAGAAAGACAACG+AGG | + | chr8_4:29604084-29604103 | Msa1322490:CDS | 40.0% | |
| CGAGAGAGACAAACTACTTT+AGG | + | chr8_4:29604118-29604137 | Msa1322490:CDS | 40.0% | |
| TTTAGGAGAGATGACATTGG+AGG | + | chr8_4:29604135-29604154 | Msa1322490:CDS | 40.0% | |
| GATGACATTGGAGGATTTCT+TGG | + | chr8_4:29604144-29604163 | Msa1322490:CDS | 40.0% | |
| AGATGCTGATATTGTGGTTG+CGG | - | chr8_4:29604289-29604308 | None:intergenic | 40.0% | |
| GCATCTACAACAAAGTTCCA+TGG | + | chr8_4:29604303-29604322 | Msa1322490:CDS | 40.0% | |
| TCCGTTTGCAGATAGTCATA+TGG | + | chr8_4:29604393-29604412 | Msa1322490:CDS | 40.0% | |
| GCCATATGACTATCTGCAAA+CGG | - | chr8_4:29604397-29604416 | None:intergenic | 40.0% | |
| TGCAGATAGTCATATGGCAT+TGG | + | chr8_4:29604399-29604418 | Msa1322490:CDS | 40.0% | |
| GCAGATAGTCATATGGCATT+GGG | + | chr8_4:29604400-29604419 | Msa1322490:CDS | 40.0% | |
| !! | TGGAAGAAAAAGGAGTACTC+CGG | + | chr8_4:29604462-29604481 | Msa1322490:CDS | 40.0% |
| ACAGGCTTACACAAATGAGT+TGG | + | chr8_4:29604673-29604692 | Msa1322490:intron | 40.0% | |
| TCTGGGGAATGAAAGGAATT+AGG | - | chr8_4:29604823-29604842 | None:intergenic | 40.0% | |
| TACTCAATCTGGGGAATGAA+AGG | - | chr8_4:29604830-29604849 | None:intergenic | 40.0% | |
| AATGGAAATGACACATGCTC+AGG | - | chr8_4:29604982-29605001 | None:intergenic | 40.0% | |
| GCAGTATTTGTGGAAGATCT+TGG | + | chr8_4:29605397-29605416 | Msa1322490:intron | 40.0% | |
| TAGGTACACAGATCTCAGAA+TGG | - | chr8_4:29605674-29605693 | None:intergenic | 40.0% | |
| ! | CGAAGCGAACCTTTGTTTGT+CGG | - | chr8_4:29602875-29602894 | None:intergenic | 45.0% |
| AGTGAACCAGTCCACGAATA+CGG | + | chr8_4:29603952-29603971 | Msa1322490:CDS | 45.0% | |
| TCCACGAATACGGACAATGA+AGG | + | chr8_4:29603962-29603981 | Msa1322490:CDS | 45.0% | |
| TCTACAACGTCAAGCTAGTC+TGG | + | chr8_4:29604009-29604028 | Msa1322490:CDS | 45.0% | |
| GAGGATTTCTTGGTGAAAGC+AGG | + | chr8_4:29604154-29604173 | Msa1322490:CDS | 45.0% | |
| GCTAGGCATATAAATCCCCA+TGG | - | chr8_4:29604323-29604342 | None:intergenic | 45.0% | |
| TATAGCACAGCCGTTACACA+TGG | + | chr8_4:29604348-29604367 | Msa1322490:CDS | 45.0% | |
| ATAGCACAGCCGTTACACAT+GGG | + | chr8_4:29604349-29604368 | Msa1322490:CDS | 45.0% | |
| !! | GGAGTACTCCTTTTTCTTCC+AGG | - | chr8_4:29604463-29604482 | None:intergenic | 45.0% |
| !! | AAGAAAAAGGAGTACTCCGG+AGG | + | chr8_4:29604465-29604484 | Msa1322490:CDS | 45.0% |
| TGGAGAAGACTGTTGAGAGA+AGG | + | chr8_4:29604494-29604513 | Msa1322490:CDS | 45.0% | |
| CTGTTGAGAGAAGGCAGAAA+AGG | + | chr8_4:29604503-29604522 | Msa1322490:CDS | 45.0% | |
| GGAGATTAAAGTTTCACGCC+TGG | + | chr8_4:29604694-29604713 | Msa1322490:CDS | 45.0% | |
| TAAAGTTTCACGCCTGGAAG+AGG | + | chr8_4:29604700-29604719 | Msa1322490:CDS | 45.0% | |
| AGGGATATCAGGCTGATCAA+TGG | - | chr8_4:29605069-29605088 | None:intergenic | 45.0% | |
| ! | CTTGGTGTATCAGGGATATC+AGG | - | chr8_4:29605080-29605099 | None:intergenic | 45.0% |
| TTCCAGAGATACCAAAAGGC+AGG | - | chr8_4:29605762-29605781 | None:intergenic | 45.0% | |
| ACTCAGACAATGGGGTCTCA+AGG | + | chr8_4:29603764-29603783 | Msa1322490:CDS | 50.0% | |
| !! | GTGGAGATGGTAGTGGAAGA+CGG | + | chr8_4:29603789-29603808 | Msa1322490:CDS | 50.0% |
| CACAACTCCACTCTCTTGTG+AGG | + | chr8_4:29603813-29603832 | Msa1322490:CDS | 50.0% | |
| CATTGTCCGTATTCGTGGAC+TGG | - | chr8_4:29603961-29603980 | None:intergenic | 50.0% | |
| GCCTTCATTGTCCGTATTCG+TGG | - | chr8_4:29603966-29603985 | None:intergenic | 50.0% | |
| TGCATTCAGCAAGAGGACTG+TGG | + | chr8_4:29604042-29604061 | Msa1322490:CDS | 50.0% | |
| AGAGGACTGTGGATGAGGTT+TGG | + | chr8_4:29604053-29604072 | Msa1322490:CDS | 50.0% | |
| !! | GAATACCGATTCTACGGCTG+CGG | + | chr8_4:29604207-29604226 | Msa1322490:CDS | 50.0% |
| AGTATCACAGTTTCCTCCGC+AGG | + | chr8_4:29604246-29604265 | Msa1322490:CDS | 50.0% | |
| GTATCACAGTTTCCTCCGCA+GGG | + | chr8_4:29604247-29604266 | Msa1322490:CDS | 50.0% | |
| TACTGTAACCACTGACCCTG+CGG | - | chr8_4:29604265-29604284 | None:intergenic | 50.0% | |
| GGGGATTTATATGCCTAGCC+AGG | + | chr8_4:29604324-29604343 | Msa1322490:CDS | 50.0% | |
| GTAACGGCTGTGCTATAACC+TGG | - | chr8_4:29604345-29604364 | None:intergenic | 50.0% | |
| TAGCACAGCCGTTACACATG+GGG | + | chr8_4:29604350-29604369 | Msa1322490:CDS | 50.0% | |
| GCATTGGGTGCACCTCTAAT+GGG | + | chr8_4:29604415-29604434 | Msa1322490:CDS | 50.0% | |
| CATTGGGTGCACCTCTAATG+GGG | + | chr8_4:29604416-29604435 | Msa1322490:CDS | 50.0% | |
| TCTGACACAGTCCCCATTAG+AGG | - | chr8_4:29604430-29604449 | None:intergenic | 50.0% | |
| CGCAGATGCCTGGAAGAAAA+AGG | + | chr8_4:29604452-29604471 | Msa1322490:CDS | 50.0% | |
| !! | AAGGAGTACTCCGGAGGATA+TGG | + | chr8_4:29604471-29604490 | Msa1322490:CDS | 50.0% |
| GTCTTCTCCACCATATCCTC+CGG | - | chr8_4:29604484-29604503 | None:intergenic | 50.0% | |
| CTGTTTCCGTGCTCTTGAAC+GGG | - | chr8_4:29604554-29604573 | None:intergenic | 50.0% | |
| CCTGTTTCCGTGCTCTTGAA+CGG | - | chr8_4:29604555-29604574 | None:intergenic | 50.0% | |
| ! | TCTCTAGCTCCTGCATGTTG+AGG | - | chr8_4:29605589-29605608 | None:intergenic | 50.0% |
| GGTTCGGCAATTGGTGTACA+TGG | - | chr8_4:29605620-29605639 | None:intergenic | 50.0% | |
| ! | CACCTGCCTTTTGGTATCTC+TGG | + | chr8_4:29605757-29605776 | Msa1322490:three_prime_UTR | 50.0% |
| TGGGTCGCGAGAAAATCGTC+AGG | + | chr8_4:29603614-29603633 | Msa1322490:intron | 55.0% | |
| GGGTCGCGAGAAAATCGTCA+GGG | + | chr8_4:29603615-29603634 | Msa1322490:intron | 55.0% | |
| CAGACAATGGGGTCTCAAGG+TGG | + | chr8_4:29603767-29603786 | Msa1322490:CDS | 55.0% | |
| ACAATGGGGTCTCAAGGTGG+TGG | + | chr8_4:29603770-29603789 | Msa1322490:CDS | 55.0% | |
| !! | CAAGGTGGTGGAGATGGTAG+TGG | + | chr8_4:29603782-29603801 | Msa1322490:CDS | 55.0% |
| CAGCAAGAGGACTGTGGATG+AGG | + | chr8_4:29604048-29604067 | Msa1322490:CDS | 55.0% | |
| GGCTGTGCTATAACCTGGCT+AGG | - | chr8_4:29604340-29604359 | None:intergenic | 55.0% | |
| GCACCTGACCCCATGTGTAA+CGG | - | chr8_4:29604361-29604380 | None:intergenic | 55.0% | |
| ! | GGCATTGGGTGCACCTCTAA+TGG | + | chr8_4:29604414-29604433 | Msa1322490:CDS | 55.0% |
| GTGTCAGATACGCAGATGCC+TGG | + | chr8_4:29604442-29604461 | Msa1322490:CDS | 55.0% | |
| GAGTACTCCGGAGGATATGG+TGG | + | chr8_4:29604474-29604493 | Msa1322490:CDS | 55.0% | |
| ! | CCGTTCAAGAGCACGGAAAC+AGG | + | chr8_4:29604552-29604571 | Msa1322490:CDS | 55.0% |
| ! | TGAGGCTGACACCTGCCTTT+TGG | + | chr8_4:29605748-29605767 | Msa1322490:three_prime_UTR | 55.0% |
| !! | GGGTCTCAAGGTGGTGGAGA+TGG | + | chr8_4:29603776-29603795 | Msa1322490:CDS | 60.0% |
| ATCGGCCGCAGCCGTAGAAT+CGG | - | chr8_4:29604215-29604234 | None:intergenic | 60.0% | |
| ! | GGCTGCGGCCGATTCAAATG+TGG | + | chr8_4:29604222-29604241 | Msa1322490:CDS | 60.0% |
| AGTTTCCTCCGCAGGGTCAG+TGG | + | chr8_4:29604254-29604273 | Msa1322490:CDS | 60.0% | |
| TGTAACCACTGACCCTGCGG+AGG | - | chr8_4:29604262-29604281 | None:intergenic | 60.0% | |
| CAGCCGTTACACATGGGGTC+AGG | + | chr8_4:29604355-29604374 | Msa1322490:CDS | 60.0% | |
| CATGGGGTCAGGTGCTTCGA+TGG | + | chr8_4:29604366-29604385 | Msa1322490:CDS | 60.0% | |
| CTGCTGCCCGTTCAAGAGCA+CGG | + | chr8_4:29604545-29604564 | Msa1322490:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 29602734 | 29605837 | 29602734 | ID=Msa1322490;Name=Msa1322490 |
| chr8_4 | mRNA | 29602734 | 29605837 | 29602734 | ID=Msa1322490-mRNA-1;Parent=Msa1322490;Name=Msa1322490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=223|1|1|1|0.66|0.5|4|158|322 |
| chr8_4 | exon | 29602734 | 29602884 | 29602734 | ID=Msa1322490-mRNA-1:exon:9857;Parent=Msa1322490-mRNA-1 |
| chr8_4 | exon | 29603686 | 29604573 | 29603686 | ID=Msa1322490-mRNA-1:exon:9858;Parent=Msa1322490-mRNA-1 |
| chr8_4 | exon | 29604677 | 29604748 | 29604677 | ID=Msa1322490-mRNA-1:exon:9859;Parent=Msa1322490-mRNA-1 |
| chr8_4 | exon | 29605599 | 29605837 | 29605599 | ID=Msa1322490-mRNA-1:exon:9860;Parent=Msa1322490-mRNA-1 |
| chr8_4 | five_prime_UTR | 29602734 | 29602884 | 29602734 | ID=Msa1322490-mRNA-1:five_prime_utr;Parent=Msa1322490-mRNA-1 |
| chr8_4 | five_prime_UTR | 29603686 | 29603757 | 29603686 | ID=Msa1322490-mRNA-1:five_prime_utr;Parent=Msa1322490-mRNA-1 |
| chr8_4 | CDS | 29603758 | 29604573 | 29603758 | ID=Msa1322490-mRNA-1:cds;Parent=Msa1322490-mRNA-1 |
| chr8_4 | CDS | 29604677 | 29604748 | 29604677 | ID=Msa1322490-mRNA-1:cds;Parent=Msa1322490-mRNA-1 |
| chr8_4 | CDS | 29605599 | 29605679 | 29605599 | ID=Msa1322490-mRNA-1:cds;Parent=Msa1322490-mRNA-1 |
| chr8_4 | three_prime_UTR | 29605680 | 29605837 | 29605680 | ID=Msa1322490-mRNA-1:three_prime_utr;Parent=Msa1322490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
