Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307010 | sp|Q9FGH9|E70B1_ARATH | 44.541 | 229 | 126 | 1 | 161 | 389 | 196 | 423 | 5.03e-65 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307010 | A0A072TLW3 | 99.766 | 427 | 1 | 0 | 1 | 427 | 1 | 427 | 0.0 | 870 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0049650 | Msa1307010 | 0.818082 | 2.360360e-52 | -8.615850e-47 |
| Msa0607340 | Msa1307010 | 0.800139 | 1.657770e-48 | -8.615850e-47 |
| Msa1275540 | Msa1307010 | -0.802324 | 5.920504e-49 | -8.615850e-47 |
| Msa1307010 | Msa1307660 | 0.816730 | 4.756379e-52 | -8.615850e-47 |
| Msa1307010 | Msa1453780 | 0.808468 | 3.051628e-50 | -8.615850e-47 |
| Msa0376450 | Msa1307010 | 0.822299 | 2.550962e-53 | -8.615850e-47 |
| Msa0471720 | Msa1307010 | 0.822398 | 2.420442e-53 | -8.615850e-47 |
| Msa1200880 | Msa1307010 | 0.805683 | 1.185637e-49 | -8.615850e-47 |
| Msa0516510 | Msa1307010 | 0.821350 | 4.231278e-53 | -8.615850e-47 |
| Msa0849510 | Msa1307010 | -0.802572 | 5.263598e-49 | -8.615850e-47 |
| Msa0967650 | Msa1307010 | 0.822776 | 1.977130e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307010 | MtrunA17_Chr8g0344461 | 99.766 | 427 | 1 | 0 | 1 | 427 | 1 | 427 | 0.0 | 870 |
| Msa1307010 | MtrunA17_Chr4g0030621 | 34.794 | 388 | 223 | 6 | 11 | 395 | 44 | 404 | 4.22e-73 | 242 |
| Msa1307010 | MtrunA17_Chr4g0057561 | 34.091 | 440 | 247 | 10 | 9 | 431 | 98 | 511 | 8.36e-73 | 243 |
| Msa1307010 | MtrunA17_Chr2g0327741 | 34.015 | 391 | 218 | 5 | 9 | 395 | 38 | 392 | 2.73e-70 | 233 |
| Msa1307010 | MtrunA17_Chr5g0431731 | 35.219 | 389 | 220 | 8 | 46 | 428 | 98 | 460 | 1.39e-67 | 228 |
| Msa1307010 | MtrunA17_Chr1g0182041 | 34.056 | 461 | 238 | 14 | 9 | 449 | 42 | 456 | 2.06e-67 | 226 |
| Msa1307010 | MtrunA17_Chr7g0219041 | 35.337 | 416 | 228 | 9 | 13 | 418 | 98 | 482 | 4.78e-67 | 227 |
| Msa1307010 | MtrunA17_Chr1g0182031 | 32.462 | 459 | 248 | 12 | 9 | 449 | 40 | 454 | 7.23e-65 | 219 |
| Msa1307010 | MtrunA17_Chr3g0106431 | 39.259 | 270 | 155 | 4 | 161 | 428 | 191 | 453 | 1.94e-60 | 208 |
| Msa1307010 | MtrunA17_Chr1g0197101 | 33.146 | 356 | 213 | 5 | 40 | 389 | 96 | 432 | 4.62e-58 | 202 |
| Msa1307010 | MtrunA17_Chr1g0177671 | 31.266 | 387 | 230 | 6 | 9 | 389 | 70 | 426 | 4.64e-58 | 202 |
| Msa1307010 | MtrunA17_Chr3g0086881 | 34.146 | 369 | 214 | 9 | 46 | 405 | 79 | 427 | 3.28e-56 | 196 |
| Msa1307010 | MtrunA17_Chr5g0431741 | 38.290 | 269 | 158 | 4 | 161 | 428 | 258 | 519 | 1.03e-55 | 196 |
| Msa1307010 | MtrunA17_Chr6g0462011 | 39.013 | 223 | 135 | 1 | 167 | 389 | 288 | 509 | 5.82e-48 | 176 |
| Msa1307010 | MtrunA17_Chr7g0224041 | 31.975 | 319 | 186 | 7 | 75 | 389 | 148 | 439 | 2.52e-47 | 173 |
| Msa1307010 | MtrunA17_Chr5g0431761 | 36.744 | 215 | 135 | 1 | 161 | 375 | 259 | 472 | 8.94e-47 | 170 |
| Msa1307010 | MtrunA17_Chr5g0431811 | 37.445 | 227 | 139 | 2 | 161 | 385 | 287 | 512 | 9.98e-42 | 159 |
| Msa1307010 | MtrunA17_Chr1g0214001 | 29.147 | 422 | 234 | 12 | 44 | 428 | 101 | 494 | 2.09e-40 | 154 |
| Msa1307010 | MtrunA17_Chr5g0432091 | 35.586 | 222 | 136 | 4 | 167 | 385 | 267 | 484 | 3.49e-38 | 147 |
| Msa1307010 | MtrunA17_Chr5g0431871 | 36.364 | 176 | 109 | 2 | 161 | 334 | 1 | 175 | 1.53e-28 | 111 |
| Msa1307010 | MtrunA17_Chr5g0432041 | 27.984 | 243 | 161 | 7 | 161 | 397 | 251 | 485 | 4.85e-23 | 102 |
| Msa1307010 | MtrunA17_Chr1g0152401 | 27.948 | 229 | 151 | 5 | 172 | 389 | 257 | 482 | 1.59e-21 | 97.8 |
| Msa1307010 | MtrunA17_Chr5g0431991 | 32.402 | 179 | 107 | 3 | 161 | 338 | 250 | 415 | 4.09e-21 | 95.5 |
| Msa1307010 | MtrunA17_Chr1g0147911 | 24.503 | 302 | 219 | 4 | 98 | 390 | 153 | 454 | 6.09e-21 | 95.9 |
| Msa1307010 | MtrunA17_Chr3g0104851 | 27.542 | 236 | 159 | 5 | 162 | 393 | 249 | 476 | 2.24e-16 | 82.0 |
| Msa1307010 | MtrunA17_Chr4g0002391 | 23.581 | 229 | 172 | 3 | 164 | 389 | 219 | 447 | 4.52e-16 | 80.9 |
| Msa1307010 | MtrunA17_Chr2g0300651 | 24.434 | 221 | 164 | 3 | 172 | 389 | 224 | 444 | 6.67e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307010 | AT1G72470.1 | 64.977 | 434 | 124 | 8 | 9 | 427 | 23 | 443 | 1.81e-179 | 516 |
| Msa1307010 | AT3G14090.1 | 59.955 | 447 | 147 | 5 | 1 | 427 | 1 | 435 | 1.98e-168 | 488 |
| Msa1307010 | AT1G54090.1 | 57.871 | 451 | 148 | 7 | 1 | 427 | 1 | 433 | 1.74e-166 | 483 |
| Msa1307010 | AT5G50380.1 | 38.322 | 441 | 217 | 14 | 9 | 427 | 80 | 487 | 1.61e-75 | 250 |
| Msa1307010 | AT3G29400.1 | 38.275 | 371 | 202 | 7 | 24 | 390 | 78 | 425 | 1.10e-71 | 239 |
| Msa1307010 | AT5G58430.1 | 44.541 | 229 | 126 | 1 | 161 | 389 | 196 | 423 | 5.12e-66 | 223 |
| Msa1307010 | AT5G59730.1 | 32.176 | 432 | 235 | 11 | 15 | 427 | 36 | 428 | 3.40e-62 | 213 |
| Msa1307010 | AT5G59730.2 | 32.176 | 432 | 235 | 11 | 15 | 427 | 36 | 428 | 3.50e-62 | 213 |
| Msa1307010 | AT2G39380.1 | 32.151 | 423 | 255 | 8 | 9 | 427 | 46 | 440 | 7.08e-62 | 213 |
| Msa1307010 | AT3G09520.1 | 33.079 | 393 | 219 | 7 | 9 | 393 | 43 | 399 | 3.02e-60 | 208 |
| Msa1307010 | AT1G07000.1 | 31.436 | 404 | 220 | 8 | 46 | 442 | 91 | 444 | 6.61e-59 | 204 |
| Msa1307010 | AT3G55150.1 | 30.211 | 427 | 259 | 8 | 9 | 427 | 46 | 441 | 8.95e-57 | 199 |
| Msa1307010 | AT5G52340.1 | 32.861 | 353 | 203 | 7 | 41 | 385 | 96 | 422 | 1.26e-56 | 198 |
| Msa1307010 | AT5G03540.2 | 41.228 | 228 | 133 | 1 | 163 | 390 | 86 | 312 | 5.37e-56 | 194 |
| Msa1307010 | AT2G28640.1 | 32.768 | 354 | 191 | 8 | 37 | 385 | 61 | 372 | 3.82e-55 | 194 |
| Msa1307010 | AT5G03540.1 | 41.228 | 228 | 133 | 1 | 163 | 390 | 201 | 427 | 3.83e-55 | 194 |
| Msa1307010 | AT5G03540.3 | 41.228 | 228 | 133 | 1 | 163 | 390 | 227 | 453 | 6.04e-55 | 194 |
| Msa1307010 | AT1G07725.1 | 35.448 | 268 | 156 | 4 | 166 | 427 | 174 | 430 | 2.66e-53 | 189 |
| Msa1307010 | AT2G28650.1 | 40.928 | 237 | 135 | 2 | 172 | 404 | 152 | 387 | 6.32e-51 | 182 |
| Msa1307010 | AT3G09530.1 | 30.946 | 391 | 227 | 8 | 6 | 389 | 35 | 389 | 1.07e-49 | 179 |
| Msa1307010 | AT5G13990.1 | 33.333 | 360 | 209 | 6 | 41 | 392 | 145 | 481 | 4.15e-47 | 173 |
| Msa1307010 | AT5G13150.1 | 34.959 | 246 | 151 | 4 | 162 | 405 | 206 | 444 | 2.54e-42 | 159 |
| Msa1307010 | AT5G61010.1 | 28.134 | 359 | 224 | 7 | 42 | 389 | 96 | 431 | 5.92e-42 | 158 |
| Msa1307010 | AT5G61010.2 | 28.134 | 359 | 224 | 7 | 42 | 389 | 96 | 431 | 5.92e-42 | 158 |
| Msa1307010 | AT5G52350.1 | 34.361 | 227 | 148 | 1 | 163 | 389 | 155 | 380 | 9.53e-42 | 157 |
| Msa1307010 | AT4G31540.1 | 24.535 | 269 | 199 | 4 | 129 | 394 | 194 | 461 | 6.80e-18 | 87.0 |
| Msa1307010 | AT1G51640.1 | 25.217 | 230 | 159 | 5 | 158 | 385 | 185 | 403 | 6.87e-14 | 74.3 |
Find 105 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGCTTCTATAGCAAATT+TGG | 0.190755 | 8_4:-2018205 | Msa1307010:CDS |
| CCTTCTAAGGTTCCTGTTCC+TGG | 0.211046 | 8_4:-2019985 | Msa1307010:CDS |
| TGTATGAGCTTATAGTTTCT+AGG | 0.246738 | 8_4:-2019891 | Msa1307010:CDS |
| TTCGACGGGTTCGAGGTATT+CGG | 0.249759 | 8_4:-2019866 | Msa1307010:CDS |
| CGCGAATGTATTCAAGTTTA+CGG | 0.252082 | 8_4:-2020489 | Msa1307010:CDS |
| CTTTGGCTATTCATTTGATT+TGG | 0.255742 | 8_4:-2019792 | Msa1307010:CDS |
| CTTCAAGAGAAGGATCAATT+TGG | 0.271921 | 8_4:+2020760 | None:intergenic |
| TGATCTTCATGATGCTTTGA+TGG | 0.286103 | 8_4:-2020148 | Msa1307010:CDS |
| TCGACGGGTTCGAGGTATTC+GGG | 0.288964 | 8_4:-2019865 | Msa1307010:CDS |
| CTGGATGGTGGAGGAGGGTT+TGG | 0.302849 | 8_4:+2020842 | None:intergenic |
| CTAAGTCGTCTGAATCCATT+AGG | 0.304582 | 8_4:-2020092 | Msa1307010:CDS |
| TGGAGGAGGGTTTGGATGGG+TGG | 0.315708 | 8_4:+2020850 | None:intergenic |
| TGTTCTTAAGGAGCCTTCTA+AGG | 0.322576 | 8_4:-2019998 | Msa1307010:CDS |
| AGTTCATCAAATTCCATATC+AGG | 0.322962 | 8_4:+2019829 | None:intergenic |
| ATCGATTTCGTCACGGTTTG+TGG | 0.331954 | 8_4:+2020935 | None:intergenic |
| ATTTGAAAATGCTGTTCTTA+AGG | 0.332951 | 8_4:-2020010 | Msa1307010:CDS |
| GGGTTTGGATGGGTGGTTAT+CGG | 0.345180 | 8_4:+2020857 | None:intergenic |
| GGATCCTTCGACTCCTGATA+TGG | 0.349000 | 8_4:-2019842 | Msa1307010:CDS |
| CTCAGCCGCCTGAACCCTAA+TGG | 0.371590 | 8_4:+2020077 | None:intergenic |
| ATGAGATTGCATTAATCAAC+CGG | 0.378011 | 8_4:-2018264 | Msa1307010:CDS |
| GTCTGAATCCATTAGGGTTC+AGG | 0.389100 | 8_4:-2020085 | Msa1307010:CDS |
| AACCCTTGAACTTTACTTGT+GGG | 0.396573 | 8_4:+2018171 | None:intergenic |
| CCAGGAACAGGAACCTTAGA+AGG | 0.396965 | 8_4:+2019985 | None:intergenic |
| GGCGATCTGGATGGTGGAGG+AGG | 0.402892 | 8_4:+2020836 | None:intergenic |
| AGAAGGATCAATTTGGTTGT+TGG | 0.415306 | 8_4:+2020767 | None:intergenic |
| TATTGGTGATGTTCAGAGAT+TGG | 0.419067 | 8_4:-2020406 | Msa1307010:CDS |
| ATGGTGGAGGAGGGTTTGGA+TGG | 0.429554 | 8_4:+2020846 | None:intergenic |
| GAGCGGCTAAGGTTTGTGTT+AGG | 0.429750 | 8_4:-2020344 | Msa1307010:CDS |
| CTGAAGCAGTCACCGATCTT+CGG | 0.432154 | 8_4:-2020548 | Msa1307010:CDS |
| CTAAGCGAGCCATGGCGATC+TGG | 0.433397 | 8_4:+2020823 | None:intergenic |
| CTAGGCCTTCGACGGGTTCG+AGG | 0.434337 | 8_4:-2019873 | Msa1307010:CDS |
| TGAATTGTCCCACCAGGAAC+AGG | 0.441433 | 8_4:+2019973 | None:intergenic |
| AGCAAATCTTTGATGGGATT+GGG | 0.444484 | 8_4:-2020290 | Msa1307010:CDS |
| AGAATCTTAAACAATTTCTC+AGG | 0.455499 | 8_4:+2020171 | None:intergenic |
| TTATGTGAGCAAATCTTTGA+TGG | 0.462169 | 8_4:-2020297 | Msa1307010:CDS |
| CAATTCTCTTGCATCTCACC+CGG | 0.462512 | 8_4:+2018245 | None:intergenic |
| GTTTCTAGAGGGAGATTCTC+TGG | 0.463475 | 8_4:+2021035 | None:intergenic |
| GCTGATAGAATGATATCATC+TGG | 0.464722 | 8_4:-2020519 | Msa1307010:CDS |
| GGTTGTTGGTGTGTGAGATA+AGG | 0.473341 | 8_4:+2020781 | None:intergenic |
| GAGCAAATCTTTGATGGGAT+TGG | 0.476761 | 8_4:-2020291 | Msa1307010:CDS |
| TAAGTCGTCTGAATCCATTA+GGG | 0.483851 | 8_4:-2020091 | Msa1307010:CDS |
| TATAGTTTCTAGGCCTTCGA+CGG | 0.484032 | 8_4:-2019881 | Msa1307010:CDS |
| TGATGTTCAGAGATTGGATT+GGG | 0.493523 | 8_4:-2020400 | Msa1307010:CDS |
| TGAATTGCAAGTCAAGTTCA+AGG | 0.494360 | 8_4:-2018224 | Msa1307010:CDS |
| ACTCGAAGGGAAACCACCTT+TGG | 0.494638 | 8_4:-2019809 | Msa1307010:CDS |
| TGGTGGAGGAGGGTTTGGAT+GGG | 0.500642 | 8_4:+2020847 | None:intergenic |
| GGAGAGAGAGGTGGAGGACA+TGG | 0.500658 | 8_4:+2020878 | None:intergenic |
| TTCACGAGCTTCTTCGGAGG+CGG | 0.509475 | 8_4:+2020980 | None:intergenic |
| ACTACTAGCTGAACGGTAAG+TGG | 0.510113 | 8_4:+2020596 | None:intergenic |
| GATAACAGCTATGACGATGA+TGG | 0.512907 | 8_4:-2020690 | Msa1307010:CDS |
| ATAACAGCTATGACGATGAT+GGG | 0.514959 | 8_4:-2020689 | Msa1307010:CDS |
| TATGTGAGCAAATCTTTGAT+GGG | 0.523397 | 8_4:-2020296 | Msa1307010:CDS |
| CGGTTGGCTGAGGCTGCTAG+AGG | 0.524968 | 8_4:-2020045 | Msa1307010:CDS |
| ACGATGGATAAGAGCGGCTA+AGG | 0.526663 | 8_4:-2020355 | Msa1307010:CDS |
| CGACGGGTTCGAGGTATTCG+GGG | 0.527084 | 8_4:-2019864 | Msa1307010:CDS |
| CTAAGGTTCCTGTTCCTGGT+GGG | 0.534454 | 8_4:-2019981 | Msa1307010:CDS |
| AAACCCTTGAACTTTACTTG+TGG | 0.537949 | 8_4:+2018170 | None:intergenic |
| GGATTTCATCAACGGCTTGG+AGG | 0.539301 | 8_4:+2020907 | None:intergenic |
| GTTGGATTTCATCAACGGCT+TGG | 0.539759 | 8_4:+2020904 | None:intergenic |
| TCTAAGGTTCCTGTTCCTGG+TGG | 0.546496 | 8_4:-2019982 | Msa1307010:CDS |
| GTGGTTATCGGAGAGAGAGG+TGG | 0.550261 | 8_4:+2020869 | None:intergenic |
| TAAGTATCATCTTCAAGAGA+AGG | 0.557557 | 8_4:+2020750 | None:intergenic |
| GGAGCGTTGGATTTCATCAA+CGG | 0.560151 | 8_4:+2020899 | None:intergenic |
| GCGATCTGGATGGTGGAGGA+GGG | 0.564254 | 8_4:+2020837 | None:intergenic |
| GAATTGCAAGTCAAGTTCAA+GGG | 0.565501 | 8_4:-2018223 | Msa1307010:CDS |
| TGGGTGGTTATCGGAGAGAG+AGG | 0.567724 | 8_4:+2020866 | None:intergenic |
| GCGAGCCATGGCGATCTGGA+TGG | 0.569502 | 8_4:+2020827 | None:intergenic |
| GATTTCGTCACGGTTTGTGG+TGG | 0.570990 | 8_4:+2020938 | None:intergenic |
| TGGAATTTGATGAACTCGAA+GGG | 0.571767 | 8_4:-2019822 | Msa1307010:CDS |
| CTCGTCTTCTAAGCGAGCCA+TGG | 0.577030 | 8_4:+2020815 | None:intergenic |
| ATCAGCAATACACCGAAGAT+CGG | 0.577797 | 8_4:+2020536 | None:intergenic |
| GTTATCGGAGAGAGAGGTGG+AGG | 0.579599 | 8_4:+2020872 | None:intergenic |
| ATGGAATTTGATGAACTCGA+AGG | 0.579968 | 8_4:-2019823 | Msa1307010:CDS |
| GGACAATTCATCCTTTGACT+AGG | 0.582416 | 8_4:-2019960 | Msa1307010:CDS |
| AGCCATGGCGATCTGGATGG+TGG | 0.589496 | 8_4:+2020830 | None:intergenic |
| ATAGTTTCTAGGCCTTCGAC+GGG | 0.590918 | 8_4:-2019880 | Msa1307010:CDS |
| TTCATCACATACCTAGTCAA+AGG | 0.593358 | 8_4:+2019949 | None:intergenic |
| GTGATGTTCAGAGATTGGAT+TGG | 0.598042 | 8_4:-2020401 | Msa1307010:CDS |
| AGGTGGAGGACATGGAGCGT+TGG | 0.601263 | 8_4:+2020886 | None:intergenic |
| CACGTATACTACTAGCTGAA+CGG | 0.602042 | 8_4:+2020589 | None:intergenic |
| GGTGTTGAGAAGTTGAGTAT+TGG | 0.606513 | 8_4:-2020423 | Msa1307010:CDS |
| TTCAAGTTTACGGTAGTGTG+AGG | 0.609746 | 8_4:-2020479 | Msa1307010:CDS |
| CATGGCGATCTGGATGGTGG+AGG | 0.609927 | 8_4:+2020833 | None:intergenic |
| CGGAGGCGGTTGAGTCCCAT+CGG | 0.610394 | 8_4:+2020994 | None:intergenic |
| GAATACCTCGAACCCGTCGA+AGG | 0.610961 | 8_4:+2019868 | None:intergenic |
| GGTTGGCTGAGGCTGCTAGA+GGG | 0.614909 | 8_4:-2020044 | Msa1307010:CDS |
| AGATCGGTGACTGCTTCAGA+AGG | 0.615546 | 8_4:+2020552 | None:intergenic |
| CTCCACCATCCAGATCGCCA+TGG | 0.624970 | 8_4:-2020832 | Msa1307010:CDS |
| CAAATCAAATGAATAGCCAA+AGG | 0.625451 | 8_4:+2019793 | None:intergenic |
| AATTCCATATCAGGAGTCGA+AGG | 0.631296 | 8_4:+2019838 | None:intergenic |
| GACGGGTTCGAGGTATTCGG+GGG | 0.639781 | 8_4:-2019863 | Msa1307010:CDS |
| ATCAAATGAATAGCCAAAGG+TGG | 0.642625 | 8_4:+2019796 | None:intergenic |
| AAAGGATGAATTGTCCCACC+AGG | 0.644369 | 8_4:+2019967 | None:intergenic |
| TGAATCCATTAGGGTTCAGG+CGG | 0.646503 | 8_4:-2020082 | Msa1307010:CDS |
| AAGCGATTAGTATTAGTCGT+AGG | 0.646978 | 8_4:-2020197 | Msa1307010:CDS |
| GGTAAAGATCGATTTCGTCA+CGG | 0.650650 | 8_4:+2020928 | None:intergenic |
| TAGAGGGAGATTCTCTGGTG+AGG | 0.652277 | 8_4:+2021040 | None:intergenic |
| AGGCGGTTGAGTCCCATCGG+AGG | 0.657767 | 8_4:+2020997 | None:intergenic |
| TAGTGTGAGGAAATCAGCTG+TGG | 0.658643 | 8_4:-2020466 | Msa1307010:CDS |
| TGAGATTGCATTAATCAACC+GGG | 0.659126 | 8_4:-2018263 | Msa1307010:CDS |
| AGTGGTAACAGTAGTAGCAA+CGG | 0.666045 | 8_4:+2020623 | None:intergenic |
| TGAACGGTAAGTGGAAGCAG+TGG | 0.687913 | 8_4:+2020605 | None:intergenic |
| TAACAGCTATGACGATGATG+GGG | 0.703233 | 8_4:-2020688 | Msa1307010:CDS |
| TTGAGACGAAGATAAGACGA+TGG | 0.707719 | 8_4:-2020371 | Msa1307010:CDS |
| GATAAGACGATGGATAAGAG+CGG | 0.720593 | 8_4:-2020361 | Msa1307010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAATTTTTTTTTTTTT+GGG | + | chr8_4:2019666-2019685 | None:intergenic | 0.0% |
| !!! | TATTTAAATTTTTTTTTTTT+TGG | + | chr8_4:2019667-2019686 | None:intergenic | 0.0% |
| !!! | TTAAATTTTTTTTTTTTTGG+GGG | + | chr8_4:2019664-2019683 | None:intergenic | 10.0% |
| !!! | TTATATTAAGTTTTGTATTT+TGG | + | chr8_4:2020518-2020537 | None:intergenic | 10.0% |
| !!! | AATCATTAAAAAAAACTTTT+AGG | + | chr8_4:2020597-2020616 | None:intergenic | 10.0% |
| !! | ATTAAAAAAAATATCTTGTA+TGG | - | chr8_4:2020669-2020688 | Msa1307010:CDS | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:2019641-2019660 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:2019641-2019660 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:2019641-2019660 | None:intergenic | 100.0% |
| !!! | TAAATTTTTTTTTTTTTGGG+GGG | + | chr8_4:2019663-2019682 | None:intergenic | 15.0% |
| !! | AATAATAAATTTCTCTCATT+TGG | + | chr8_4:2019791-2019810 | None:intergenic | 15.0% |
| !!! | AGAATAAAATAAGTTGAATT+AGG | - | chr8_4:2020013-2020032 | Msa1307010:CDS | 15.0% |
| !!! | TTAGCTTGTTAAAAAATATA+AGG | - | chr8_4:2020052-2020071 | Msa1307010:CDS | 15.0% |
| !!! | TGTTTTTGACATTTTTTTTT+AGG | - | chr8_4:2020312-2020331 | Msa1307010:CDS | 15.0% |
| !!! | GTTTTTGACATTTTTTTTTA+GGG | - | chr8_4:2020313-2020332 | Msa1307010:CDS | 15.0% |
| !! | TGCACAAAAAAAAATTAATT+GGG | + | chr8_4:2020934-2020953 | None:intergenic | 15.0% |
| !! | TTGCACAAAAAAAAATTAAT+TGG | + | chr8_4:2020935-2020954 | None:intergenic | 15.0% |
| !!! | AATTAATTTTTTTTTGTGCA+AGG | - | chr8_4:2020934-2020953 | Msa1307010:CDS | 15.0% |
| !!! | AAATTTTTTTTTTTTTGGGG+GGG | + | chr8_4:2019662-2019681 | None:intergenic | 20.0% |
| !! | TTTGGATTCAATTGTAAATT+TGG | + | chr8_4:2020500-2020519 | None:intergenic | 20.0% |
| !!! | TAAGTTTTAACAAAGCTTAA+TGG | + | chr8_4:2020773-2020792 | None:intergenic | 20.0% |
| !!! | TATTGATGATGCTTGTTTTA+TGG | - | chr8_4:2018965-2018984 | Msa1307010:intron | 25.0% |
| ! | AAATTAAAAAGCTGAATAGC+AGG | + | chr8_4:2019005-2019024 | None:intergenic | 25.0% |
| ! | AGAATCTTAAACAATTTCTC+AGG | + | chr8_4:2019059-2019078 | None:intergenic | 25.0% |
| ! | TCAAAAACAACATCAATATC+AGG | + | chr8_4:2019113-2019132 | None:intergenic | 25.0% |
| ! | ATTTGAAAATGCTGTTCTTA+AGG | - | chr8_4:2019217-2019236 | Msa1307010:intron | 25.0% |
| !!! | AATTTTTTTTTTTTTGGGGG+GGG | + | chr8_4:2019661-2019680 | None:intergenic | 25.0% |
| !!! | TTACTTTCTTTCCTTTTTCA+TGG | + | chr8_4:2019723-2019742 | None:intergenic | 25.0% |
| ! | AATAAATTTCTCTCATTTGG+TGG | + | chr8_4:2019788-2019807 | None:intergenic | 25.0% |
| ! | ACAAAAAGCAAAACAATAAC+TGG | + | chr8_4:2019839-2019858 | None:intergenic | 25.0% |
| !!! | TGTTTTGCTTTTTGTTCTTT+TGG | - | chr8_4:2019844-2019863 | Msa1307010:CDS | 25.0% |
| ! | TTGAGTTTGATATGAGTTAT+TGG | - | chr8_4:2020119-2020138 | Msa1307010:CDS | 25.0% |
| !!! | TTAACTTAAGCCTTATTTCT+TGG | - | chr8_4:2020849-2020868 | Msa1307010:CDS | 25.0% |
| TAAGTATCATCTTCAAGAGA+AGG | + | chr8_4:2018480-2018499 | None:intergenic | 30.0% | |
| !!! | GATTCGAGTTTTAAGAAACT+CGG | - | chr8_4:2018783-2018802 | Msa1307010:intron | 30.0% |
| TTATGTGAGCAAATCTTTGA+TGG | - | chr8_4:2018930-2018949 | Msa1307010:intron | 30.0% | |
| TATGTGAGCAAATCTTTGAT+GGG | - | chr8_4:2018931-2018950 | Msa1307010:intron | 30.0% | |
| TGTATGAGCTTATAGTTTCT+AGG | - | chr8_4:2019336-2019355 | Msa1307010:intron | 30.0% | |
| AGTTCATCAAATTCCATATC+AGG | + | chr8_4:2019401-2019420 | None:intergenic | 30.0% | |
| CAAATCAAATGAATAGCCAA+AGG | + | chr8_4:2019437-2019456 | None:intergenic | 30.0% | |
| CTTTGGCTATTCATTTGATT+TGG | - | chr8_4:2019435-2019454 | Msa1307010:intron | 30.0% | |
| GAAAATAGCCTGGATTAATT+GGG | + | chr8_4:2019604-2019623 | None:intergenic | 30.0% | |
| TGAAAATAGCCTGGATTAAT+TGG | + | chr8_4:2019605-2019624 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTTTTTTTGGGGGG+GGG | + | chr8_4:2019660-2019679 | None:intergenic | 30.0% |
| AATAGAAGAGATTATACCAG+CGG | - | chr8_4:2019694-2019713 | Msa1307010:intron | 30.0% | |
| GAGAAATTTATTATTCCACG+AGG | - | chr8_4:2019796-2019815 | Msa1307010:CDS | 30.0% | |
| CAAAACAATAACTGGATACA+AGG | + | chr8_4:2019831-2019850 | None:intergenic | 30.0% | |
| !! | GTTTTAATAGATGGGAGTAA+AGG | + | chr8_4:2019905-2019924 | None:intergenic | 30.0% |
| !!! | GGGATGATGTTTTAATAGAT+GGG | + | chr8_4:2019913-2019932 | None:intergenic | 30.0% |
| !!! | AGGGATGATGTTTTAATAGA+TGG | + | chr8_4:2019914-2019933 | None:intergenic | 30.0% |
| ! | AACTTTTAGGCTTACTAGTT+CGG | + | chr8_4:2020584-2020603 | None:intergenic | 30.0% |
| ATGAGATTGCATTAATCAAC+CGG | - | chr8_4:2020963-2020982 | Msa1307010:CDS | 30.0% | |
| !!! | TTTTTTGAGCGGTTTCTAGA+GGG | + | chr8_4:2018206-2018225 | None:intergenic | 35.0% |
| !!! | ATTTTTTGAGCGGTTTCTAG+AGG | + | chr8_4:2018207-2018226 | None:intergenic | 35.0% |
| TCAAAAAATCATCCTCCGAT+GGG | - | chr8_4:2018218-2018237 | Msa1307010:CDS | 35.0% | |
| !!! | CATTTTTTCACGAGCTTCTT+CGG | + | chr8_4:2018256-2018275 | None:intergenic | 35.0% |
| AGAAGGATCAATTTGGTTGT+TGG | + | chr8_4:2018463-2018482 | None:intergenic | 35.0% | |
| CTTCAAGAGAAGGATCAATT+TGG | + | chr8_4:2018470-2018489 | None:intergenic | 35.0% | |
| ATAACAGCTATGACGATGAT+GGG | - | chr8_4:2018538-2018557 | Msa1307010:intron | 35.0% | |
| GCTGATAGAATGATATCATC+TGG | - | chr8_4:2018708-2018727 | Msa1307010:intron | 35.0% | |
| ! | CGCGAATGTATTCAAGTTTA+CGG | - | chr8_4:2018738-2018757 | Msa1307010:intron | 35.0% |
| !! | TATTGGTGATGTTCAGAGAT+TGG | - | chr8_4:2018821-2018840 | Msa1307010:intron | 35.0% |
| TGATGTTCAGAGATTGGATT+GGG | - | chr8_4:2018827-2018846 | Msa1307010:intron | 35.0% | |
| AGCAAATCTTTGATGGGATT+GGG | - | chr8_4:2018937-2018956 | Msa1307010:intron | 35.0% | |
| !!! | TGATGCTTGTTTTATGGAGA+CGG | - | chr8_4:2018971-2018990 | Msa1307010:intron | 35.0% |
| ! | TGTTTTATGGAGACGGTTAA+AGG | - | chr8_4:2018978-2018997 | Msa1307010:intron | 35.0% |
| AAGCGATTAGTATTAGTCGT+AGG | - | chr8_4:2019030-2019049 | Msa1307010:intron | 35.0% | |
| TGATCTTCATGATGCTTTGA+TGG | - | chr8_4:2019079-2019098 | Msa1307010:intron | 35.0% | |
| TAAGTCGTCTGAATCCATTA+GGG | - | chr8_4:2019136-2019155 | Msa1307010:intron | 35.0% | |
| TTCATCACATACCTAGTCAA+AGG | + | chr8_4:2019281-2019300 | None:intergenic | 35.0% | |
| ATGGAATTTGATGAACTCGA+AGG | - | chr8_4:2019404-2019423 | Msa1307010:intron | 35.0% | |
| TGGAATTTGATGAACTCGAA+GGG | - | chr8_4:2019405-2019424 | Msa1307010:intron | 35.0% | |
| ATCAAATGAATAGCCAAAGG+TGG | + | chr8_4:2019434-2019453 | None:intergenic | 35.0% | |
| AGGATCATATGAAAATAGCC+TGG | + | chr8_4:2019614-2019633 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTTTTTGGGGGGG+GGG | + | chr8_4:2019659-2019678 | None:intergenic | 35.0% |
| ATAGAAGAGATTATACCAGC+GGG | - | chr8_4:2019695-2019714 | Msa1307010:intron | 35.0% | |
| ! | AAACATCATCCCTTGTTTGA+AGG | - | chr8_4:2019921-2019940 | Msa1307010:CDS | 35.0% |
| ATTCTCACCTTTAACGACAA+GGG | + | chr8_4:2019998-2020017 | None:intergenic | 35.0% | |
| TATTCTCACCTTTAACGACA+AGG | + | chr8_4:2019999-2020018 | None:intergenic | 35.0% | |
| TCCATTCAAGCCAAGAAATA+AGG | + | chr8_4:2020862-2020881 | None:intergenic | 35.0% | |
| GAAGGTTATCCAATTCCAAA+GGG | + | chr8_4:2020903-2020922 | None:intergenic | 35.0% | |
| AGAAGGTTATCCAATTCCAA+AGG | + | chr8_4:2020904-2020923 | None:intergenic | 35.0% | |
| TGGAATTGGATAACCTTCTT+TGG | - | chr8_4:2020905-2020924 | Msa1307010:CDS | 35.0% | |
| ATTAATTGGGACACCAAAGA+AGG | + | chr8_4:2020921-2020940 | None:intergenic | 35.0% | |
| TGAGATTGCATTAATCAACC+GGG | - | chr8_4:2020964-2020983 | Msa1307010:CDS | 35.0% | |
| TGAATTGCAAGTCAAGTTCA+AGG | - | chr8_4:2021003-2021022 | Msa1307010:CDS | 35.0% | |
| GAATTGCAAGTCAAGTTCAA+GGG | - | chr8_4:2021004-2021023 | Msa1307010:CDS | 35.0% | |
| AAGGGCTTCTATAGCAAATT+TGG | - | chr8_4:2021022-2021041 | Msa1307010:CDS | 35.0% | |
| !!! | TCGGAGGATGATTTTTTGAG+CGG | + | chr8_4:2018217-2018236 | None:intergenic | 40.0% |
| CTCAAAAAATCATCCTCCGA+TGG | - | chr8_4:2018217-2018236 | Msa1307010:CDS | 40.0% | |
| ! | GGTAAAGATCGATTTCGTCA+CGG | + | chr8_4:2018302-2018321 | None:intergenic | 40.0% |
| GATAACAGCTATGACGATGA+TGG | - | chr8_4:2018537-2018556 | Msa1307010:intron | 40.0% | |
| TAACAGCTATGACGATGATG+GGG | - | chr8_4:2018539-2018558 | Msa1307010:intron | 40.0% | |
| AGTGGTAACAGTAGTAGCAA+CGG | + | chr8_4:2018607-2018626 | None:intergenic | 40.0% | |
| CACGTATACTACTAGCTGAA+CGG | + | chr8_4:2018641-2018660 | None:intergenic | 40.0% | |
| ATCAGCAATACACCGAAGAT+CGG | + | chr8_4:2018694-2018713 | None:intergenic | 40.0% | |
| ! | TTCAAGTTTACGGTAGTGTG+AGG | - | chr8_4:2018748-2018767 | Msa1307010:intron | 40.0% |
| ! | GGTGTTGAGAAGTTGAGTAT+TGG | - | chr8_4:2018804-2018823 | Msa1307010:intron | 40.0% |
| GTGATGTTCAGAGATTGGAT+TGG | - | chr8_4:2018826-2018845 | Msa1307010:intron | 40.0% | |
| TTGAGACGAAGATAAGACGA+TGG | - | chr8_4:2018856-2018875 | Msa1307010:intron | 40.0% | |
| GATAAGACGATGGATAAGAG+CGG | - | chr8_4:2018866-2018885 | Msa1307010:intron | 40.0% | |
| GAGCAAATCTTTGATGGGAT+TGG | - | chr8_4:2018936-2018955 | Msa1307010:intron | 40.0% | |
| CTAAGTCGTCTGAATCCATT+AGG | - | chr8_4:2019135-2019154 | Msa1307010:intron | 40.0% | |
| TGTTCTTAAGGAGCCTTCTA+AGG | - | chr8_4:2019229-2019248 | Msa1307010:intron | 40.0% | |
| GGACAATTCATCCTTTGACT+AGG | - | chr8_4:2019267-2019286 | Msa1307010:intron | 40.0% | |
| ! | TATAGTTTCTAGGCCTTCGA+CGG | - | chr8_4:2019346-2019365 | Msa1307010:intron | 40.0% |
| AATTCCATATCAGGAGTCGA+AGG | + | chr8_4:2019392-2019411 | None:intergenic | 40.0% | |
| AACAGAGTCCCAATTAATCC+AGG | - | chr8_4:2019593-2019612 | Msa1307010:intron | 40.0% | |
| !!! | TTTTTTTTTTTTGGGGGGGG+GGG | + | chr8_4:2019658-2019677 | None:intergenic | 40.0% |
| !! | TGACGGATTTCAGTAATACC+AGG | - | chr8_4:2019759-2019778 | Msa1307010:intron | 40.0% |
| ATGAGTAGTGCTTTGACAGT+GGG | + | chr8_4:2019975-2019994 | None:intergenic | 40.0% | |
| TACTCATCCCTTGTCGTTAA+AGG | - | chr8_4:2019988-2020007 | Msa1307010:CDS | 40.0% | |
| TGAGAGTGAATATGTCACGT+CGG | + | chr8_4:2020734-2020753 | None:intergenic | 40.0% | |
| !! | GCCTTATTTCTTGGCTTGAA+TGG | - | chr8_4:2020858-2020877 | Msa1307010:CDS | 40.0% |
| TCAATATAGACGATGCCCTT+TGG | - | chr8_4:2020885-2020904 | Msa1307010:CDS | 40.0% | |
| ! | GTTTCTAGAGGGAGATTCTC+TGG | + | chr8_4:2018195-2018214 | None:intergenic | 45.0% |
| ! | TTTTTCACGAGCTTCTTCGG+AGG | + | chr8_4:2018253-2018272 | None:intergenic | 45.0% |
| ! | ATCGATTTCGTCACGGTTTG+TGG | + | chr8_4:2018295-2018314 | None:intergenic | 45.0% |
| GTTGGATTTCATCAACGGCT+TGG | + | chr8_4:2018326-2018345 | None:intergenic | 45.0% | |
| !! | GGAGCGTTGGATTTCATCAA+CGG | + | chr8_4:2018331-2018350 | None:intergenic | 45.0% |
| GGTTGTTGGTGTGTGAGATA+AGG | + | chr8_4:2018449-2018468 | None:intergenic | 45.0% | |
| ACTACTAGCTGAACGGTAAG+TGG | + | chr8_4:2018634-2018653 | None:intergenic | 45.0% | |
| TAGTGTGAGGAAATCAGCTG+TGG | - | chr8_4:2018761-2018780 | Msa1307010:intron | 45.0% | |
| GTCTGAATCCATTAGGGTTC+AGG | - | chr8_4:2019142-2019161 | Msa1307010:intron | 45.0% | |
| TGAATCCATTAGGGTTCAGG+CGG | - | chr8_4:2019145-2019164 | Msa1307010:intron | 45.0% | |
| AAAGGATGAATTGTCCCACC+AGG | + | chr8_4:2019263-2019282 | None:intergenic | 45.0% | |
| ! | ATAGTTTCTAGGCCTTCGAC+GGG | - | chr8_4:2019347-2019366 | Msa1307010:intron | 45.0% |
| !!! | TTTTTTTTTTTGGGGGGGGG+GGG | + | chr8_4:2019657-2019676 | None:intergenic | 45.0% |
| GGCTCGTTTCCTTCAAACAA+GGG | + | chr8_4:2019933-2019952 | None:intergenic | 45.0% | |
| TGAGTAGTGCTTTGACAGTG+GGG | + | chr8_4:2019974-2019993 | None:intergenic | 45.0% | |
| GATGAGTAGTGCTTTGACAG+TGG | + | chr8_4:2019976-2019995 | None:intergenic | 45.0% | |
| !! | TAGACGATGCCCTTTGGAAT+TGG | - | chr8_4:2020891-2020910 | Msa1307010:CDS | 45.0% |
| CAATTCTCTTGCATCTCACC+CGG | + | chr8_4:2020985-2021004 | None:intergenic | 45.0% | |
| !!! | TTTAAATTTTTTTTTTTTTG+GGG | + | chr8_4:2019665-2019684 | None:intergenic | 5.0% |
| !!! | TGATTTTTTTTTAATTTTTA+AGG | + | chr8_4:2020248-2020267 | None:intergenic | 5.0% |
| TAGAGGGAGATTCTCTGGTG+AGG | + | chr8_4:2018190-2018209 | None:intergenic | 50.0% | |
| GATTTCGTCACGGTTTGTGG+TGG | + | chr8_4:2018292-2018311 | None:intergenic | 50.0% | |
| ! | GGATTTCATCAACGGCTTGG+AGG | + | chr8_4:2018323-2018342 | None:intergenic | 50.0% |
| GGGTTTGGATGGGTGGTTAT+CGG | + | chr8_4:2018373-2018392 | None:intergenic | 50.0% | |
| TGAACGGTAAGTGGAAGCAG+TGG | + | chr8_4:2018625-2018644 | None:intergenic | 50.0% | |
| AGATCGGTGACTGCTTCAGA+AGG | + | chr8_4:2018678-2018697 | None:intergenic | 50.0% | |
| CTGAAGCAGTCACCGATCTT+CGG | - | chr8_4:2018679-2018698 | Msa1307010:intron | 50.0% | |
| ACGATGGATAAGAGCGGCTA+AGG | - | chr8_4:2018872-2018891 | Msa1307010:intron | 50.0% | |
| GAGCGGCTAAGGTTTGTGTT+AGG | - | chr8_4:2018883-2018902 | Msa1307010:intron | 50.0% | |
| CCAGGAACAGGAACCTTAGA+AGG | + | chr8_4:2019245-2019264 | None:intergenic | 50.0% | |
| !! | CCTTCTAAGGTTCCTGTTCC+TGG | - | chr8_4:2019242-2019261 | Msa1307010:intron | 50.0% |
| ! | TCTAAGGTTCCTGTTCCTGG+TGG | - | chr8_4:2019245-2019264 | Msa1307010:intron | 50.0% |
| CTAAGGTTCCTGTTCCTGGT+GGG | - | chr8_4:2019246-2019265 | Msa1307010:intron | 50.0% | |
| TGAATTGTCCCACCAGGAAC+AGG | + | chr8_4:2019257-2019276 | None:intergenic | 50.0% | |
| ! | TTCGACGGGTTCGAGGTATT+CGG | - | chr8_4:2019361-2019380 | Msa1307010:intron | 50.0% |
| GGATCCTTCGACTCCTGATA+TGG | - | chr8_4:2019385-2019404 | Msa1307010:intron | 50.0% | |
| ACTCGAAGGGAAACCACCTT+TGG | - | chr8_4:2019418-2019437 | Msa1307010:intron | 50.0% | |
| GTTTGTGTTCCGAAGGAGGT+AGG | + | chr8_4:2019576-2019595 | None:intergenic | 50.0% | |
| CTCTGTTTGTGTTCCGAAGG+AGG | + | chr8_4:2019580-2019599 | None:intergenic | 50.0% | |
| GGACTCTGTTTGTGTTCCGA+AGG | + | chr8_4:2019583-2019602 | None:intergenic | 50.0% | |
| !!! | TTTTTTTTTTGGGGGGGGGG+GGG | + | chr8_4:2019656-2019675 | None:intergenic | 50.0% |
| GGGCTCGTTTCCTTCAAACA+AGG | + | chr8_4:2019934-2019953 | None:intergenic | 50.0% | |
| TGAAGGAAACGAGCCCTAAG+TGG | - | chr8_4:2019938-2019957 | Msa1307010:CDS | 50.0% | |
| GGGGGAATGAGAACCACTTA+GGG | + | chr8_4:2019954-2019973 | None:intergenic | 50.0% | |
| AGTAGTGCTTTGACAGTGGG+GGG | + | chr8_4:2019972-2019991 | None:intergenic | 50.0% | |
| GAGTAGTGCTTTGACAGTGG+GGG | + | chr8_4:2019973-2019992 | None:intergenic | 50.0% | |
| ATGTCACGTCGGTCAACATC+AGG | + | chr8_4:2020723-2020742 | None:intergenic | 50.0% | |
| TTCACGAGCTTCTTCGGAGG+CGG | + | chr8_4:2018250-2018269 | None:intergenic | 55.0% | |
| GTTATCGGAGAGAGAGGTGG+AGG | + | chr8_4:2018358-2018377 | None:intergenic | 55.0% | |
| GTGGTTATCGGAGAGAGAGG+TGG | + | chr8_4:2018361-2018380 | None:intergenic | 55.0% | |
| TGGGTGGTTATCGGAGAGAG+AGG | + | chr8_4:2018364-2018383 | None:intergenic | 55.0% | |
| TGGTGGAGGAGGGTTTGGAT+GGG | + | chr8_4:2018383-2018402 | None:intergenic | 55.0% | |
| ! | ATGGTGGAGGAGGGTTTGGA+TGG | + | chr8_4:2018384-2018403 | None:intergenic | 55.0% |
| CTCGTCTTCTAAGCGAGCCA+TGG | + | chr8_4:2018415-2018434 | None:intergenic | 55.0% | |
| ! | CGCTTTTCGCGAGTGAGAAG+AGG | - | chr8_4:2018907-2018926 | Msa1307010:intron | 55.0% |
| ! | AGGCGGCTGAGATTTTGTCG+CGG | - | chr8_4:2019162-2019181 | Msa1307010:intron | 55.0% |
| ! | GGCTGAGATTTTGTCGCGGT+TGG | - | chr8_4:2019166-2019185 | Msa1307010:intron | 55.0% |
| !! | GATTTTGTCGCGGTTGGCTG+AGG | - | chr8_4:2019172-2019191 | Msa1307010:intron | 55.0% |
| GAATACCTCGAACCCGTCGA+AGG | + | chr8_4:2019362-2019381 | None:intergenic | 55.0% | |
| ! | TCGACGGGTTCGAGGTATTC+GGG | - | chr8_4:2019362-2019381 | Msa1307010:intron | 55.0% |
| TGTGTTCCGAAGGAGGTAGG+AGG | + | chr8_4:2019573-2019592 | None:intergenic | 55.0% | |
| !!! | TTTTTTTTTGGGGGGGGGGG+GGG | + | chr8_4:2019655-2019674 | None:intergenic | 55.0% |
| ACCAGCGGGAGCCATGAAAA+AGG | - | chr8_4:2019709-2019728 | Msa1307010:intron | 55.0% | |
| !! | TCCTTTTTCATGGCTCCCGC+TGG | + | chr8_4:2019713-2019732 | None:intergenic | 55.0% |
| AACCGAGAGCGACGACATGA+CGG | - | chr8_4:2019742-2019761 | Msa1307010:intron | 55.0% | |
| ATCCGTCATGTCGTCGCTCT+CGG | + | chr8_4:2019747-2019766 | None:intergenic | 55.0% | |
| ! | TCTCTCATTTGGTGGTCGCC+TGG | + | chr8_4:2019780-2019799 | None:intergenic | 55.0% |
| ACAAGGCTCATCTGTCCTCG+TGG | + | chr8_4:2019814-2019833 | None:intergenic | 55.0% | |
| GGGGGGAATGAGAACCACTT+AGG | + | chr8_4:2019955-2019974 | None:intergenic | 55.0% | |
| AGGTGGAGGACATGGAGCGT+TGG | + | chr8_4:2018344-2018363 | None:intergenic | 60.0% | |
| GGAGAGAGAGGTGGAGGACA+TGG | + | chr8_4:2018352-2018371 | None:intergenic | 60.0% | |
| TGGAGGAGGGTTTGGATGGG+TGG | + | chr8_4:2018380-2018399 | None:intergenic | 60.0% | |
| !! | CTGGATGGTGGAGGAGGGTT+TGG | + | chr8_4:2018388-2018407 | None:intergenic | 60.0% |
| !! | GCGATCTGGATGGTGGAGGA+GGG | + | chr8_4:2018393-2018412 | None:intergenic | 60.0% |
| ! | CATGGCGATCTGGATGGTGG+AGG | + | chr8_4:2018397-2018416 | None:intergenic | 60.0% |
| CTCCACCATCCAGATCGCCA+TGG | - | chr8_4:2018395-2018414 | Msa1307010:intron | 60.0% | |
| AGCCATGGCGATCTGGATGG+TGG | + | chr8_4:2018400-2018419 | None:intergenic | 60.0% | |
| CTAAGCGAGCCATGGCGATC+TGG | + | chr8_4:2018407-2018426 | None:intergenic | 60.0% | |
| CTCAGCCGCCTGAACCCTAA+TGG | + | chr8_4:2019153-2019172 | None:intergenic | 60.0% | |
| ! | GGTTGGCTGAGGCTGCTAGA+GGG | - | chr8_4:2019183-2019202 | Msa1307010:intron | 60.0% |
| ! | CGACGGGTTCGAGGTATTCG+GGG | - | chr8_4:2019363-2019382 | Msa1307010:intron | 60.0% |
| ! | GACGGGTTCGAGGTATTCGG+GGG | - | chr8_4:2019364-2019383 | Msa1307010:intron | 60.0% |
| !!! | TTTTTTTTGGGGGGGGGGGG+GGG | + | chr8_4:2019654-2019673 | None:intergenic | 60.0% |
| AGGCGGTTGAGTCCCATCGG+AGG | + | chr8_4:2018233-2018252 | None:intergenic | 65.0% | |
| CGGAGGCGGTTGAGTCCCAT+CGG | + | chr8_4:2018236-2018255 | None:intergenic | 65.0% | |
| !! | GGCGATCTGGATGGTGGAGG+AGG | + | chr8_4:2018394-2018413 | None:intergenic | 65.0% |
| GCGAGCCATGGCGATCTGGA+TGG | + | chr8_4:2018403-2018422 | None:intergenic | 65.0% | |
| ! | CGGTTGGCTGAGGCTGCTAG+AGG | - | chr8_4:2019182-2019201 | Msa1307010:intron | 65.0% |
| ! | CTAGGCCTTCGACGGGTTCG+AGG | - | chr8_4:2019354-2019373 | Msa1307010:intron | 65.0% |
| !!! | TTTTTTTGGGGGGGGGGGGG+GGG | + | chr8_4:2019653-2019672 | None:intergenic | 65.0% |
| !!! | TTTTTTGGGGGGGGGGGGGG+GGG | + | chr8_4:2019652-2019671 | None:intergenic | 70.0% |
| !! | TTTTTGGGGGGGGGGGGGGG+GGG | + | chr8_4:2019651-2019670 | None:intergenic | 75.0% |
| !! | GGGGGGGGGGGGGTGTAGTG+AGG | + | chr8_4:2019634-2019653 | None:intergenic | 80.0% |
| !!! | TTTTGGGGGGGGGGGGGGGG+GGG | + | chr8_4:2019650-2019669 | None:intergenic | 80.0% |
| ! | TTTGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:2019649-2019668 | None:intergenic | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:2019648-2019667 | None:intergenic | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr8_4:2019647-2019666 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 2018183 | 2021066 | 2018183 | ID=Msa1307010;Name=Msa1307010 |
| chr8_4 | mRNA | 2018183 | 2021066 | 2018183 | ID=Msa1307010-mRNA-1;Parent=Msa1307010;Name=Msa1307010-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.5|1|1|2|0|463 |
| chr8_4 | exon | 2019786 | 2021066 | 2019786 | ID=Msa1307010-mRNA-1:exon:681;Parent=Msa1307010-mRNA-1 |
| chr8_4 | exon | 2018183 | 2018293 | 2018183 | ID=Msa1307010-mRNA-1:exon:680;Parent=Msa1307010-mRNA-1 |
| chr8_4 | CDS | 2019786 | 2021066 | 2019786 | ID=Msa1307010-mRNA-1:cds;Parent=Msa1307010-mRNA-1 |
| chr8_4 | CDS | 2018183 | 2018293 | 2018183 | ID=Msa1307010-mRNA-1:cds;Parent=Msa1307010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
