Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315850 | G7ZZ33 | 94.225 | 329 | 19 | 0 | 1 | 329 | 1 | 329 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089540 | Msa1315850 | 0.810895 | 9.183069e-51 | -8.615850e-47 |
| Msa0685390 | Msa1315850 | -0.839107 | 1.930917e-57 | -8.615850e-47 |
| Msa0812610 | Msa1315850 | 0.807064 | 6.065415e-50 | -8.615850e-47 |
| Msa1235590 | Msa1315850 | 0.863780 | 1.950225e-64 | -8.615850e-47 |
| Msa1277300 | Msa1315850 | 0.932152 | 1.306885e-94 | -8.615850e-47 |
| Msa1297080 | Msa1315850 | 0.811150 | 8.083131e-51 | -8.615850e-47 |
| Msa1315850 | Msa1328860 | 0.801847 | 7.423004e-49 | -8.615850e-47 |
| Msa1315850 | Msa1422820 | -0.812794 | 3.543870e-51 | -8.615850e-47 |
| Msa0476730 | Msa1315850 | -0.809077 | 2.261507e-50 | -8.615850e-47 |
| Msa1025200 | Msa1315850 | 0.804291 | 2.317590e-49 | -8.615850e-47 |
| Msa1025220 | Msa1315850 | 0.813543 | 2.427240e-51 | -8.615850e-47 |
| Msa1186670 | Msa1315850 | 0.808012 | 3.817122e-50 | -8.615850e-47 |
| Msa0870220 | Msa1315850 | -0.805166 | 1.521665e-49 | -8.615850e-47 |
| Msa0903460 | Msa1315850 | -0.819185 | 1.325942e-52 | -8.615850e-47 |
| Msa0935930 | Msa1315850 | -0.819269 | 1.268987e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315850 | MtrunA17_Chr8g0345591 | 94.225 | 329 | 19 | 0 | 1 | 329 | 1 | 329 | 0.0 | 640 |
| Msa1315850 | MtrunA17_Chr7g0276511 | 68.715 | 179 | 42 | 1 | 1 | 179 | 9 | 173 | 2.45e-74 | 227 |
| Msa1315850 | MtrunA17_Chr7g0276501 | 67.327 | 101 | 27 | 2 | 235 | 329 | 9 | 109 | 5.34e-43 | 144 |
| Msa1315850 | MtrunA17_Chr8g0392901 | 31.034 | 203 | 103 | 9 | 137 | 319 | 87 | 272 | 3.59e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315850 | AT2G46890.1 | 69.018 | 326 | 96 | 1 | 4 | 329 | 2 | 322 | 8.10e-159 | 447 |
| Msa1315850 | AT1G18180.2 | 32.394 | 213 | 119 | 8 | 110 | 314 | 61 | 256 | 2.15e-13 | 70.1 |
| Msa1315850 | AT1G18180.1 | 32.394 | 213 | 119 | 8 | 110 | 314 | 61 | 256 | 2.94e-13 | 69.7 |
| Msa1315850 | AT1G73650.2 | 33.491 | 212 | 118 | 9 | 110 | 314 | 61 | 256 | 1.83e-11 | 64.3 |
| Msa1315850 | AT1G73650.5 | 33.491 | 212 | 118 | 9 | 110 | 314 | 61 | 256 | 2.03e-11 | 64.3 |
| Msa1315850 | AT1G73650.3 | 33.491 | 212 | 118 | 9 | 110 | 314 | 61 | 256 | 2.68e-11 | 63.9 |
Find 90 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACATGGATGGACCTTTAT+TGG | 0.173583 | 8_4:+15437299 | Msa1315850:CDS |
| CAACAAACCTTTGAGTATCT+TGG | 0.284159 | 8_4:+15437058 | Msa1315850:CDS |
| TCAATGTCAATCTTCTCTTC+TGG | 0.286755 | 8_4:+15434892 | Msa1315850:CDS |
| ACTGAGATGGGTCAACAATA+TGG | 0.318813 | 8_4:+15435446 | Msa1315850:CDS |
| AATCTTCTCTTCTGGCTCAT+TGG | 0.322941 | 8_4:+15434900 | Msa1315850:CDS |
| GAGACAAAAGAAGGGTTGTT+TGG | 0.326425 | 8_4:-15434810 | None:intergenic |
| GACGCTGTGGTGGTGGGGAC+TGG | 0.351750 | 8_4:+15437256 | Msa1315850:CDS |
| ACAGGGATCACTGTCCAATA+TGG | 0.356410 | 8_4:-15435263 | None:intergenic |
| GTGTCAAGTACAGGGATTAC+AGG | 0.372568 | 8_4:-15437191 | None:intergenic |
| ATGGACCTTTATTGGAGCTT+TGG | 0.373438 | 8_4:+15437307 | Msa1315850:CDS |
| TGCTGTTTATGTCTCTCAGC+AGG | 0.384130 | 8_4:+15435496 | Msa1315850:CDS |
| AGACAAAAGAAGGGTTGTTT+GGG | 0.385909 | 8_4:-15434809 | None:intergenic |
| ATTAACCAAAGCTCCAATAA+AGG | 0.385986 | 8_4:-15437312 | None:intergenic |
| CTTTGGCTCAATATAATTTG+TGG | 0.388293 | 8_4:+15435315 | Msa1315850:CDS |
| TGCAGATGATTGATCCATAT+TGG | 0.392989 | 8_4:+15435249 | Msa1315850:intron |
| ACAAAGTGCACAACATATAA+AGG | 0.399002 | 8_4:-15437035 | None:intergenic |
| GCTATTGTTGTCTGTTTAAG+TGG | 0.413288 | 8_4:+15437089 | Msa1315850:CDS |
| TTACTATGCAACACACCCTT+TGG | 0.420431 | 8_4:+15435298 | Msa1315850:CDS |
| TTGGTGAGACGCTGTGGTGG+TGG | 0.429994 | 8_4:+15437249 | Msa1315850:CDS |
| GTGAGATAGAAAATGATTGA+TGG | 0.436527 | 8_4:-15434753 | None:intergenic |
| TATGTACCCAGTGACTAGAT+TGG | 0.437217 | 8_4:-15434929 | None:intergenic |
| GTCAAATCCAATCTAGTCAC+TGG | 0.443204 | 8_4:+15434922 | Msa1315850:CDS |
| CATAGGCCGGTGTCAAGTAC+AGG | 0.445863 | 8_4:-15437200 | None:intergenic |
| TTTGAGTATCTTGGACTTGG+TGG | 0.450705 | 8_4:+15437067 | Msa1315850:CDS |
| GGGGACTGGTTGTGTTTGCA+TGG | 0.461450 | 8_4:+15437270 | Msa1315850:CDS |
| CTGTACTTGACACCGGCCTA+TGG | 0.464031 | 8_4:+15437201 | Msa1315850:CDS |
| TGGTGAGACGCTGTGGTGGT+GGG | 0.471699 | 8_4:+15437250 | Msa1315850:CDS |
| AGCGTCTCACCAAAGTAATT+CGG | 0.476940 | 8_4:-15437239 | None:intergenic |
| AGCCGGCGTCCGAATTACTT+TGG | 0.477007 | 8_4:+15437230 | Msa1315850:CDS |
| TAGACGTGAAAAGTGGCAAT+GGG | 0.478654 | 8_4:+15435400 | Msa1315850:CDS |
| AGCTTATGTGACTAGGCTTG+TGG | 0.481619 | 8_4:+15437346 | Msa1315850:CDS |
| TAGTAATGAACAAGCATCAC+AGG | 0.485910 | 8_4:-15435281 | None:intergenic |
| AACAACAAGTTCAAAGAGCT+TGG | 0.488952 | 8_4:+15437164 | Msa1315850:CDS |
| TAGAAAATGATTGATGGAAG+AGG | 0.495802 | 8_4:-15434747 | None:intergenic |
| CAACTTCAGCGTGGATACCT+TGG | 0.496899 | 8_4:+15437426 | Msa1315850:CDS |
| AGACTGGCGTTTCACTGAGA+TGG | 0.499038 | 8_4:+15435433 | Msa1315850:CDS |
| CACAAATTATATTGAGCCAA+AGG | 0.499071 | 8_4:-15435314 | None:intergenic |
| ACAAATTATATTGAGCCAAA+GGG | 0.499635 | 8_4:-15435313 | None:intergenic |
| TGTGTTTAGCTTATGTGACT+AGG | 0.502231 | 8_4:+15437339 | Msa1315850:CDS |
| CATACAGTTGAGACAAAAGA+AGG | 0.505563 | 8_4:-15434819 | None:intergenic |
| GACTGGCGTTTCACTGAGAT+GGG | 0.508793 | 8_4:+15435434 | Msa1315850:CDS |
| ACCTTTGAGTATCTTGGACT+TGG | 0.512692 | 8_4:+15437064 | Msa1315850:CDS |
| ATTACTTTAGACGTGAAAAG+TGG | 0.516981 | 8_4:+15435393 | Msa1315850:CDS |
| CTGACACATACACGAACATC+AGG | 0.519976 | 8_4:-15437732 | None:intergenic |
| AAAAGAAGGGTTGTTTGGGA+TGG | 0.528967 | 8_4:-15434805 | None:intergenic |
| CATGGAACCTTGGACATGGA+TGG | 0.532497 | 8_4:+15437288 | Msa1315850:CDS |
| GTTGTGTTTGCATGGAACCT+TGG | 0.534053 | 8_4:+15437278 | Msa1315850:CDS |
| AAAATAAAAGTGATTGTATG+TGG | 0.541108 | 8_4:-15437672 | None:intergenic |
| GGTGAGACGCTGTGGTGGTG+GGG | 0.545609 | 8_4:+15437251 | Msa1315850:CDS |
| AATATGGAAAACATTGGTGG+TGG | 0.549525 | 8_4:+15435462 | Msa1315850:CDS |
| GAGCATTGGCAAAGAGAAGA+GGG | 0.556714 | 8_4:-15434860 | None:intergenic |
| AACAATATGGAAAACATTGG+TGG | 0.558953 | 8_4:+15435459 | Msa1315850:CDS |
| AGTGCACAACATATAAAGGA+AGG | 0.575974 | 8_4:-15437031 | None:intergenic |
| GAAGGAAATGACTTAAACCA+AGG | 0.582801 | 8_4:-15437443 | None:intergenic |
| GATTGTTCGACACATCCGAC+AGG | 0.583026 | 8_4:+15437634 | Msa1315850:three_prime_UTR |
| AAAACAATACAACACTTGGC+AGG | 0.584989 | 8_4:-15437544 | None:intergenic |
| AGAGCATTGGCAAAGAGAAG+AGG | 0.585487 | 8_4:-15434861 | None:intergenic |
| TTGTCTCAACTGTATGGACA+TGG | 0.593248 | 8_4:+15434826 | Msa1315850:CDS |
| AATGGGGTGCTAGAGAAGAC+TGG | 0.595480 | 8_4:+15435417 | Msa1315850:CDS |
| ATATGGAAAACATTGGTGGT+GGG | 0.596512 | 8_4:+15435463 | Msa1315850:CDS |
| GTGTCAGTGTCTAGACATGT+TGG | 0.597827 | 8_4:+15437748 | Msa1315850:three_prime_UTR |
| AAGGAAAACAATACAACACT+TGG | 0.598753 | 8_4:-15437548 | None:intergenic |
| CACATGTGTTAATGTCCTGT+CGG | 0.601910 | 8_4:-15437649 | None:intergenic |
| ATTGAAGAAGAAGAGAGCAT+TGG | 0.603170 | 8_4:-15434874 | None:intergenic |
| TTAGACGTGAAAAGTGGCAA+TGG | 0.603246 | 8_4:+15435399 | Msa1315850:CDS |
| TTGATGAGTGATAATTGTTG+AGG | 0.603485 | 8_4:-15434779 | None:intergenic |
| TGGCTCAATATAATTTGTGG+AGG | 0.605658 | 8_4:+15435318 | Msa1315850:CDS |
| GTCAACAATATGGAAAACAT+TGG | 0.608096 | 8_4:+15435456 | Msa1315850:CDS |
| ACCAAGTCCAAGATACTCAA+AGG | 0.615173 | 8_4:-15437065 | None:intergenic |
| TTTGCATGGAACCTTGGACA+TGG | 0.616196 | 8_4:+15437284 | Msa1315850:CDS |
| TAAAGGTCCATCCATGTCCA+AGG | 0.620673 | 8_4:-15437295 | None:intergenic |
| GTAATCCCTGTACTTGACAC+CGG | 0.623890 | 8_4:+15437194 | Msa1315850:CDS |
| CCGGCCTATGGTATTACAGC+CGG | 0.626049 | 8_4:+15437213 | Msa1315850:CDS |
| TCAAATCCAATCTAGTCACT+GGG | 0.631364 | 8_4:+15434923 | Msa1315850:CDS |
| ATAGGCCGGTGTCAAGTACA+GGG | 0.634937 | 8_4:-15437199 | None:intergenic |
| CACCAAAGTAATTCGGACGC+CGG | 0.635129 | 8_4:-15437232 | None:intergenic |
| GTGCACAACATATAAAGGAA+GGG | 0.637619 | 8_4:-15437030 | None:intergenic |
| ATTACTTTGGTGAGACGCTG+TGG | 0.656576 | 8_4:+15437243 | Msa1315850:CDS |
| TTATGTGACTAGGCTTGTGG+AGG | 0.657735 | 8_4:+15437349 | Msa1315850:CDS |
| AGTAATGAACAAGCATCACA+GGG | 0.679888 | 8_4:-15435280 | None:intergenic |
| ATGATTCTATCAAATAAACA+AGG | 0.681616 | 8_4:-15437567 | None:intergenic |
| ACAATCAAACACAAGTACAT+CGG | 0.681887 | 8_4:-15437617 | None:intergenic |
| GACGCCGGCTGTAATACCAT+AGG | 0.682562 | 8_4:-15437217 | None:intergenic |
| ATACAGTTGAGACAAAAGAA+GGG | 0.686916 | 8_4:-15434818 | None:intergenic |
| ACTTTGGTGAGACGCTGTGG+TGG | 0.689623 | 8_4:+15437246 | Msa1315850:CDS |
| CCGGCTGTAATACCATAGGC+CGG | 0.693621 | 8_4:-15437213 | None:intergenic |
| ATCAGAAGACAACTTCAGCG+TGG | 0.695728 | 8_4:+15437417 | Msa1315850:CDS |
| CATTGGCAAAGAGAAGAGGG+TGG | 0.704400 | 8_4:-15434857 | None:intergenic |
| AGACGTGAAAAGTGGCAATG+GGG | 0.716295 | 8_4:+15435401 | Msa1315850:CDS |
| AGTCACATAAGCTAAACACA+AGG | 0.719129 | 8_4:-15437336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGAAATTTTACAATTTTA+GGG | + | chr8_4:15435821-15435840 | Msa1315850:intron | 10.0% |
| !!! | TATTAGTTATTTCTATTTTT+CGG | + | chr8_4:15435943-15435962 | Msa1315850:intron | 10.0% |
| !!! | ATGATTCAATTTTCAAATTT+TGG | + | chr8_4:15435182-15435201 | Msa1315850:intron | 15.0% |
| !!! | AATTTTCAAATTTTGGTTTA+TGG | + | chr8_4:15435189-15435208 | Msa1315850:intron | 15.0% |
| !!! | ATTTTCAAATTTTGGTTTAT+GGG | + | chr8_4:15435190-15435209 | Msa1315850:intron | 15.0% |
| !!! | TTTTGGATAAATAATCAATT+TGG | + | chr8_4:15435580-15435599 | Msa1315850:intron | 15.0% |
| !!! | GATTGAAATTTTACAATTTT+AGG | + | chr8_4:15435820-15435839 | Msa1315850:intron | 15.0% |
| !! | TTGAATTATATATAATTTGG+AGG | + | chr8_4:15435850-15435869 | Msa1315850:intron | 15.0% |
| !! | TCAAAGAAAATTGATATATT+TGG | + | chr8_4:15436068-15436087 | Msa1315850:intron | 15.0% |
| !!! | CTGTTTTATTTTTTATAGAT+AGG | - | chr8_4:15436209-15436228 | None:intergenic | 15.0% |
| !!! | CTATTTTTATTATTTTAGTC+AGG | - | chr8_4:15436450-15436469 | None:intergenic | 15.0% |
| !!! | ACTTTTTTCTAACAATTAAA+TGG | + | chr8_4:15436601-15436620 | Msa1315850:intron | 15.0% |
| !!! | CTTTTTTCTAACAATTAAAT+GGG | + | chr8_4:15436602-15436621 | Msa1315850:intron | 15.0% |
| !! | ATAATTGAATGTAATTACGT+CGG | + | chr8_4:15435021-15435040 | Msa1315850:intron | 20.0% |
| !! | ATTGAATCATTTAATCAACT+TGG | - | chr8_4:15435172-15435191 | None:intergenic | 20.0% |
| !!! | ATTAACATTTTGCAATTTCA+AGG | - | chr8_4:15435667-15435686 | None:intergenic | 20.0% |
| !! | AAAATAAGTGAATAATGTCT+GGG | + | chr8_4:15435759-15435778 | Msa1315850:intron | 20.0% |
| !!! | TTGCTTTTATTTTATATCAG+AGG | - | chr8_4:15436041-15436060 | None:intergenic | 20.0% |
| !!! | GATATATTTGGTTCAAAATT+TGG | + | chr8_4:15436080-15436099 | Msa1315850:intron | 20.0% |
| !! | TCAAAGAAAATTGATGTATT+TGG | - | chr8_4:15436107-15436126 | None:intergenic | 20.0% |
| !!! | TTATTTTTTATAGATAGGAC+TGG | - | chr8_4:15436204-15436223 | None:intergenic | 20.0% |
| !! | AAATATAGAAGATTAAGAGA+TGG | - | chr8_4:15436787-15436806 | None:intergenic | 20.0% |
| !!! | TAGATATTTTTTTTGACAGA+AGG | - | chr8_4:15436810-15436829 | None:intergenic | 20.0% |
| !!! | TTCTTAATTTTAACATCTGA+AGG | - | chr8_4:15437464-15437483 | None:intergenic | 20.0% |
| !! | ATGATTCTATCAAATAAACA+AGG | - | chr8_4:15437570-15437589 | None:intergenic | 20.0% |
| !! | AAAATAAAAGTGATTGTATG+TGG | - | chr8_4:15437675-15437694 | None:intergenic | 20.0% |
| ! | ACAAATTATATTGAGCCAAA+GGG | - | chr8_4:15435316-15435335 | None:intergenic | 25.0% |
| !!! | TGTCTGTTTGGTTTAATTTT+TGG | + | chr8_4:15435563-15435582 | Msa1315850:intron | 25.0% |
| ! | GAAAATAAGTGAATAATGTC+TGG | + | chr8_4:15435758-15435777 | Msa1315850:intron | 25.0% |
| ! | TTGATATCAGATTATGAAAG+AGG | + | chr8_4:15435788-15435807 | Msa1315850:intron | 25.0% |
| ! | TGATATCAGATTATGAAAGA+GGG | + | chr8_4:15435789-15435808 | Msa1315850:intron | 25.0% |
| ! | TCAAAAAAATTTGTCATGTG+CGG | - | chr8_4:15436008-15436027 | None:intergenic | 25.0% |
| !! | TTGCTTATATTTTGTAACAG+AGG | + | chr8_4:15436134-15436153 | Msa1315850:intron | 25.0% |
| !! | TGCTTATATTTTGTAACAGA+GGG | + | chr8_4:15436135-15436154 | Msa1315850:intron | 25.0% |
| !!! | ACATTTCATAGGATTTTTTG+TGG | + | chr8_4:15436287-15436306 | Msa1315850:intron | 25.0% |
| ! | AACATTAATATCGTTGTGTT+TGG | + | chr8_4:15436694-15436713 | Msa1315850:intron | 25.0% |
| ! | ATCTATATTTCCTTTGTGTT+AGG | + | chr8_4:15436825-15436844 | Msa1315850:intron | 25.0% |
| TAGAAAATGATTGATGGAAG+AGG | - | chr8_4:15434750-15434769 | None:intergenic | 30.0% | |
| GTGAGATAGAAAATGATTGA+TGG | - | chr8_4:15434756-15434775 | None:intergenic | 30.0% | |
| TTGATGAGTGATAATTGTTG+AGG | - | chr8_4:15434782-15434801 | None:intergenic | 30.0% | |
| ATACAGTTGAGACAAAAGAA+GGG | - | chr8_4:15434821-15434840 | None:intergenic | 30.0% | |
| AGTGGAATATGATGAAAGAT+TGG | - | chr8_4:15434960-15434979 | None:intergenic | 30.0% | |
| TAATCAAAGATGTGTTTGTC+TGG | - | chr8_4:15435082-15435101 | None:intergenic | 30.0% | |
| ! | ACATCTTTGATTAGAAGTGT+CGG | + | chr8_4:15435089-15435108 | Msa1315850:intron | 30.0% |
| CACAAATTATATTGAGCCAA+AGG | - | chr8_4:15435317-15435336 | None:intergenic | 30.0% | |
| ! | CTTTGGCTCAATATAATTTG+TGG | + | chr8_4:15435315-15435334 | Msa1315850:CDS | 30.0% |
| !! | ACATTGTGATTTTGTTGACT+TGG | + | chr8_4:15435345-15435364 | Msa1315850:CDS | 30.0% |
| !!! | CATTGTGATTTTGTTGACTT+GGG | + | chr8_4:15435346-15435365 | Msa1315850:CDS | 30.0% |
| ATTACTTTAGACGTGAAAAG+TGG | + | chr8_4:15435393-15435412 | Msa1315850:CDS | 30.0% | |
| GTCAACAATATGGAAAACAT+TGG | + | chr8_4:15435456-15435475 | Msa1315850:CDS | 30.0% | |
| AACAATATGGAAAACATTGG+TGG | + | chr8_4:15435459-15435478 | Msa1315850:CDS | 30.0% | |
| CAATTCATCAAACATGTTCA+AGG | - | chr8_4:15435545-15435564 | None:intergenic | 30.0% | |
| TGTTTGATGAATTGTCTGTT+TGG | + | chr8_4:15435551-15435570 | Msa1315850:intron | 30.0% | |
| !! | TGACATTAAGTTGGTAATGT+CGG | + | chr8_4:15435725-15435744 | Msa1315850:intron | 30.0% |
| !!! | ATTTCTATTTTTCGGTGTTG+AGG | + | chr8_4:15435951-15435970 | Msa1315850:intron | 30.0% |
| !!! | TTTCTATTTTTCGGTGTTGA+GGG | + | chr8_4:15435952-15435971 | Msa1315850:intron | 30.0% |
| GATAATTGGCACATTCTTAA+AGG | - | chr8_4:15435982-15436001 | None:intergenic | 30.0% | |
| TGGCGATAAAAACATTTCAT+AGG | + | chr8_4:15436276-15436295 | Msa1315850:intron | 30.0% | |
| ! | TGTGAAGAATTGATTTCTGT+AGG | + | chr8_4:15436633-15436652 | Msa1315850:intron | 30.0% |
| AAATAACAGACCTAACACAA+AGG | - | chr8_4:15436838-15436857 | None:intergenic | 30.0% | |
| !!! | TTAGGTCTGTTATTTTTCAG+CGG | + | chr8_4:15436843-15436862 | Msa1315850:intron | 30.0% |
| AGAGTGAATTTGAATTGCAA+TGG | + | chr8_4:15436906-15436925 | Msa1315850:intron | 30.0% | |
| AATTGCAATGGAAATCAACA+CGG | + | chr8_4:15436918-15436937 | Msa1315850:intron | 30.0% | |
| ! | TTTTCAATGCACAAATGACA+AGG | - | chr8_4:15436966-15436985 | None:intergenic | 30.0% |
| ACAAAGTGCACAACATATAA+AGG | - | chr8_4:15437038-15437057 | None:intergenic | 30.0% | |
| ATTAACCAAAGCTCCAATAA+AGG | - | chr8_4:15437315-15437334 | None:intergenic | 30.0% | |
| AAGGAAAACAATACAACACT+TGG | - | chr8_4:15437551-15437570 | None:intergenic | 30.0% | |
| ACAATCAAACACAAGTACAT+CGG | - | chr8_4:15437620-15437639 | None:intergenic | 30.0% | |
| AGACAAAAGAAGGGTTGTTT+GGG | - | chr8_4:15434812-15434831 | None:intergenic | 35.0% | |
| CATACAGTTGAGACAAAAGA+AGG | - | chr8_4:15434822-15434841 | None:intergenic | 35.0% | |
| ! | CTTCTTTTGTCTCAACTGTA+TGG | + | chr8_4:15434820-15434839 | Msa1315850:CDS | 35.0% |
| ! | ATTGAAGAAGAAGAGAGCAT+TGG | - | chr8_4:15434877-15434896 | None:intergenic | 35.0% |
| TCAATGTCAATCTTCTCTTC+TGG | + | chr8_4:15434892-15434911 | Msa1315850:CDS | 35.0% | |
| TCAAATCCAATCTAGTCACT+GGG | + | chr8_4:15434923-15434942 | Msa1315850:CDS | 35.0% | |
| TTCATCATATTCCACTGACA+CGG | + | chr8_4:15434964-15434983 | Msa1315850:intron | 35.0% | |
| TGCAGATGATTGATCCATAT+TGG | + | chr8_4:15435249-15435268 | Msa1315850:intron | 35.0% | |
| AGTAATGAACAAGCATCACA+GGG | - | chr8_4:15435283-15435302 | None:intergenic | 35.0% | |
| TAGTAATGAACAAGCATCAC+AGG | - | chr8_4:15435284-15435303 | None:intergenic | 35.0% | |
| ! | TGGCTCAATATAATTTGTGG+AGG | + | chr8_4:15435318-15435337 | Msa1315850:CDS | 35.0% |
| !!! | TGATTTTGTTGACTTGGGTT+TGG | + | chr8_4:15435351-15435370 | Msa1315850:CDS | 35.0% |
| AATATGGAAAACATTGGTGG+TGG | + | chr8_4:15435462-15435481 | Msa1315850:CDS | 35.0% | |
| ! | ATATGGAAAACATTGGTGGT+GGG | + | chr8_4:15435463-15435482 | Msa1315850:CDS | 35.0% |
| GATGCAGTTGTACAATTTCA+GGG | - | chr8_4:15435607-15435626 | None:intergenic | 35.0% | |
| TGATGCAGTTGTACAATTTC+AGG | - | chr8_4:15435608-15435627 | None:intergenic | 35.0% | |
| AATCAAATCCGTTCCTTTGT+TGG | + | chr8_4:15435684-15435703 | Msa1315850:intron | 35.0% | |
| TATCACTACCAACAAAGGAA+CGG | - | chr8_4:15435695-15435714 | None:intergenic | 35.0% | |
| !! | TTCCTTTGTTGGTAGTGATA+TGG | + | chr8_4:15435695-15435714 | Msa1315850:intron | 35.0% |
| GGACTAAAGTGACATTAAGT+TGG | + | chr8_4:15435716-15435735 | Msa1315850:intron | 35.0% | |
| !!! | TTCTATTTTTCGGTGTTGAG+GGG | + | chr8_4:15435953-15435972 | Msa1315850:intron | 35.0% |
| AAAAATTTGTCATGTGCGGA+CGG | - | chr8_4:15436004-15436023 | None:intergenic | 35.0% | |
| CTTGTCTCACTGAAATTTGA+TGG | + | chr8_4:15436256-15436275 | Msa1315850:intron | 35.0% | |
| ACGTGTGTGAAATTTGAACT+TGG | - | chr8_4:15436477-15436496 | None:intergenic | 35.0% | |
| CAAAAACAACGCTAACACAT+AGG | - | chr8_4:15436526-15436545 | None:intergenic | 35.0% | |
| !! | CTATGTGTTAGCGTTGTTTT+TGG | + | chr8_4:15436524-15436543 | Msa1315850:intron | 35.0% |
| !! | GGAATTTCTAGTTTCAGCTA+TGG | + | chr8_4:15436715-15436734 | Msa1315850:intron | 35.0% |
| GTTATTGTGAGTTGTTAGTC+AGG | + | chr8_4:15436883-15436902 | Msa1315850:intron | 35.0% | |
| !! | TCGTTGCAGATGTTTTTGAT+TGG | + | chr8_4:15437002-15437021 | Msa1315850:intron | 35.0% |
| GTGCACAACATATAAAGGAA+GGG | - | chr8_4:15437033-15437052 | None:intergenic | 35.0% | |
| AGTGCACAACATATAAAGGA+AGG | - | chr8_4:15437034-15437053 | None:intergenic | 35.0% | |
| CAACAAACCTTTGAGTATCT+TGG | + | chr8_4:15437058-15437077 | Msa1315850:CDS | 35.0% | |
| GCTATTGTTGTCTGTTTAAG+TGG | + | chr8_4:15437089-15437108 | Msa1315850:CDS | 35.0% | |
| AACAACAAGTTCAAAGAGCT+TGG | + | chr8_4:15437164-15437183 | Msa1315850:CDS | 35.0% | |
| AGTCACATAAGCTAAACACA+AGG | - | chr8_4:15437339-15437358 | None:intergenic | 35.0% | |
| ! | TGTGTTTAGCTTATGTGACT+AGG | + | chr8_4:15437339-15437358 | Msa1315850:CDS | 35.0% |
| GAAGGAAATGACTTAAACCA+AGG | - | chr8_4:15437446-15437465 | None:intergenic | 35.0% | |
| AAAACAATACAACACTTGGC+AGG | - | chr8_4:15437547-15437566 | None:intergenic | 35.0% | |
| AAAAGAAGGGTTGTTTGGGA+TGG | - | chr8_4:15434808-15434827 | None:intergenic | 40.0% | |
| GAGACAAAAGAAGGGTTGTT+TGG | - | chr8_4:15434813-15434832 | None:intergenic | 40.0% | |
| TTGTCTCAACTGTATGGACA+TGG | + | chr8_4:15434826-15434845 | Msa1315850:CDS | 40.0% | |
| !! | AATCTTCTCTTCTGGCTCAT+TGG | + | chr8_4:15434900-15434919 | Msa1315850:CDS | 40.0% |
| GTCAAATCCAATCTAGTCAC+TGG | + | chr8_4:15434922-15434941 | Msa1315850:CDS | 40.0% | |
| TATGTACCCAGTGACTAGAT+TGG | - | chr8_4:15434932-15434951 | None:intergenic | 40.0% | |
| TTACTATGCAACACACCCTT+TGG | + | chr8_4:15435298-15435317 | Msa1315850:CDS | 40.0% | |
| TTAGACGTGAAAAGTGGCAA+TGG | + | chr8_4:15435399-15435418 | Msa1315850:CDS | 40.0% | |
| TAGACGTGAAAAGTGGCAAT+GGG | + | chr8_4:15435400-15435419 | Msa1315850:CDS | 40.0% | |
| ACTGAGATGGGTCAACAATA+TGG | + | chr8_4:15435446-15435465 | Msa1315850:CDS | 40.0% | |
| GTCCATATCACTACCAACAA+AGG | - | chr8_4:15435700-15435719 | None:intergenic | 40.0% | |
| TTCACACACGTCAGTCAAAA+TGG | + | chr8_4:15436486-15436505 | Msa1315850:intron | 40.0% | |
| ACCTTTGAGTATCTTGGACT+TGG | + | chr8_4:15437064-15437083 | Msa1315850:CDS | 40.0% | |
| ACCAAGTCCAAGATACTCAA+AGG | - | chr8_4:15437068-15437087 | None:intergenic | 40.0% | |
| TTTGAGTATCTTGGACTTGG+TGG | + | chr8_4:15437067-15437086 | Msa1315850:CDS | 40.0% | |
| AGCGTCTCACCAAAGTAATT+CGG | - | chr8_4:15437242-15437261 | None:intergenic | 40.0% | |
| ATGGACCTTTATTGGAGCTT+TGG | + | chr8_4:15437307-15437326 | Msa1315850:CDS | 40.0% | |
| CACATGTGTTAATGTCCTGT+CGG | - | chr8_4:15437652-15437671 | None:intergenic | 40.0% | |
| !! | GAGCATTGGCAAAGAGAAGA+GGG | - | chr8_4:15434863-15434882 | None:intergenic | 45.0% |
| !! | AGAGCATTGGCAAAGAGAAG+AGG | - | chr8_4:15434864-15434883 | None:intergenic | 45.0% |
| TGTTAATGTGTCCGTGTCAG+TGG | - | chr8_4:15434978-15434997 | None:intergenic | 45.0% | |
| ACAGGGATCACTGTCCAATA+TGG | - | chr8_4:15435266-15435285 | None:intergenic | 45.0% | |
| AGACGTGAAAAGTGGCAATG+GGG | + | chr8_4:15435401-15435420 | Msa1315850:CDS | 45.0% | |
| ! | TGCTGTTTATGTCTCTCAGC+AGG | + | chr8_4:15435496-15435515 | Msa1315850:CDS | 45.0% |
| GTTTATGTCTCTCAGCAGGT+TGG | + | chr8_4:15435500-15435519 | Msa1315850:intron | 45.0% | |
| !!! | TCTCTCAGCAGGTTGGTTTT+TGG | + | chr8_4:15435507-15435526 | Msa1315850:intron | 45.0% |
| TGGTGGGATTTGACATGTTC+CGG | + | chr8_4:15435887-15435906 | Msa1315850:intron | 45.0% | |
| CAGAATGTAAGCCCATGTGT+TGG | - | chr8_4:15435922-15435941 | None:intergenic | 45.0% | |
| CACACGTCAGTCAAAATGGA+CGG | + | chr8_4:15436490-15436509 | Msa1315850:intron | 45.0% | |
| GTGTCAAGTACAGGGATTAC+AGG | - | chr8_4:15437194-15437213 | None:intergenic | 45.0% | |
| GTAATCCCTGTACTTGACAC+CGG | + | chr8_4:15437194-15437213 | Msa1315850:CDS | 45.0% | |
| ATTACTTTGGTGAGACGCTG+TGG | + | chr8_4:15437243-15437262 | Msa1315850:CDS | 45.0% | |
| GTTGTGTTTGCATGGAACCT+TGG | + | chr8_4:15437278-15437297 | Msa1315850:CDS | 45.0% | |
| TTTGCATGGAACCTTGGACA+TGG | + | chr8_4:15437284-15437303 | Msa1315850:CDS | 45.0% | |
| TAAAGGTCCATCCATGTCCA+AGG | - | chr8_4:15437298-15437317 | None:intergenic | 45.0% | |
| GGACATGGATGGACCTTTAT+TGG | + | chr8_4:15437299-15437318 | Msa1315850:CDS | 45.0% | |
| AGCTTATGTGACTAGGCTTG+TGG | + | chr8_4:15437346-15437365 | Msa1315850:CDS | 45.0% | |
| TTATGTGACTAGGCTTGTGG+AGG | + | chr8_4:15437349-15437368 | Msa1315850:CDS | 45.0% | |
| ATCAGAAGACAACTTCAGCG+TGG | + | chr8_4:15437417-15437436 | Msa1315850:CDS | 45.0% | |
| CTGACACATACACGAACATC+AGG | - | chr8_4:15437735-15437754 | None:intergenic | 45.0% | |
| GTGTCAGTGTCTAGACATGT+TGG | + | chr8_4:15437748-15437767 | Msa1315850:three_prime_UTR | 45.0% | |
| !!! | ATTTTGAATTATATATAATT+TGG | + | chr8_4:15435847-15435866 | Msa1315850:intron | 5.0% |
| !!! | TTTTATTTTCTTAAAATATT+AGG | + | chr8_4:15437686-15437705 | Msa1315850:three_prime_UTR | 5.0% |
| CATTGGCAAAGAGAAGAGGG+TGG | - | chr8_4:15434860-15434879 | None:intergenic | 50.0% | |
| GTCTGGTGTCTGACACATGT+CGG | - | chr8_4:15435065-15435084 | None:intergenic | 50.0% | |
| ! | AATGGGGTGCTAGAGAAGAC+TGG | + | chr8_4:15435417-15435436 | Msa1315850:CDS | 50.0% |
| AGACTGGCGTTTCACTGAGA+TGG | + | chr8_4:15435433-15435452 | Msa1315850:CDS | 50.0% | |
| GACTGGCGTTTCACTGAGAT+GGG | + | chr8_4:15435434-15435453 | Msa1315850:CDS | 50.0% | |
| TGGAGGACTAAGTTCCTGCT+TGG | + | chr8_4:15435867-15435886 | Msa1315850:intron | 50.0% | |
| AGGACTAAGTTCCTGCTTGG+TGG | + | chr8_4:15435870-15435889 | Msa1315850:intron | 50.0% | |
| GGACTAAGTTCCTGCTTGGT+GGG | + | chr8_4:15435871-15435890 | Msa1315850:intron | 50.0% | |
| CATGTCAAATCCCACCAAGC+AGG | - | chr8_4:15435884-15435903 | None:intergenic | 50.0% | |
| !! | CATGTGTTGGTGTTGGACAC+CGG | - | chr8_4:15435909-15435928 | None:intergenic | 50.0% |
| GGTGTCCAACACCAACACAT+GGG | + | chr8_4:15435908-15435927 | Msa1315850:intron | 50.0% | |
| ! | GTAAGCCCATGTGTTGGTGT+TGG | - | chr8_4:15435916-15435935 | None:intergenic | 50.0% |
| GTCATGTGCGGACGGATAAT+TGG | - | chr8_4:15435996-15436015 | None:intergenic | 50.0% | |
| ! | ATAGGCCGGTGTCAAGTACA+GGG | - | chr8_4:15437202-15437221 | None:intergenic | 50.0% |
| CACCAAAGTAATTCGGACGC+CGG | - | chr8_4:15437235-15437254 | None:intergenic | 50.0% | |
| CATGGAACCTTGGACATGGA+TGG | + | chr8_4:15437288-15437307 | Msa1315850:CDS | 50.0% | |
| CAACTTCAGCGTGGATACCT+TGG | + | chr8_4:15437426-15437445 | Msa1315850:CDS | 50.0% | |
| GATTGTTCGACACATCCGAC+AGG | + | chr8_4:15437634-15437653 | Msa1315850:three_prime_UTR | 50.0% | |
| CGGTGTCCAACACCAACACA+TGG | + | chr8_4:15435907-15435926 | Msa1315850:intron | 55.0% | |
| ! | CATAGGCCGGTGTCAAGTAC+AGG | - | chr8_4:15437203-15437222 | None:intergenic | 55.0% |
| CTGTACTTGACACCGGCCTA+TGG | + | chr8_4:15437201-15437220 | Msa1315850:CDS | 55.0% | |
| CCGGCTGTAATACCATAGGC+CGG | - | chr8_4:15437216-15437235 | None:intergenic | 55.0% | |
| CCGGCCTATGGTATTACAGC+CGG | + | chr8_4:15437213-15437232 | Msa1315850:CDS | 55.0% | |
| ! | GACGCCGGCTGTAATACCAT+AGG | - | chr8_4:15437220-15437239 | None:intergenic | 55.0% |
| AGCCGGCGTCCGAATTACTT+TGG | + | chr8_4:15437230-15437249 | Msa1315850:CDS | 55.0% | |
| ACTTTGGTGAGACGCTGTGG+TGG | + | chr8_4:15437246-15437265 | Msa1315850:CDS | 55.0% | |
| !! | GGGGACTGGTTGTGTTTGCA+TGG | + | chr8_4:15437270-15437289 | Msa1315850:CDS | 55.0% |
| TTGGTGAGACGCTGTGGTGG+TGG | + | chr8_4:15437249-15437268 | Msa1315850:CDS | 60.0% | |
| TGGTGAGACGCTGTGGTGGT+GGG | + | chr8_4:15437250-15437269 | Msa1315850:CDS | 60.0% | |
| ! | GGTGAGACGCTGTGGTGGTG+GGG | + | chr8_4:15437251-15437270 | Msa1315850:CDS | 65.0% |
| !! | GACGCTGTGGTGGTGGGGAC+TGG | + | chr8_4:15437256-15437275 | Msa1315850:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 15434699 | 15437776 | 15434699 | ID=Msa1315850;Name=Msa1315850 |
| chr8_4 | mRNA | 15434699 | 15437776 | 15434699 | ID=Msa1315850-mRNA-1;Parent=Msa1315850;Name=Msa1315850-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|1|0.66|1|1|1|3|286|329 |
| chr8_4 | exon | 15434699 | 15434944 | 15434699 | ID=Msa1315850-mRNA-1:exon:5940;Parent=Msa1315850-mRNA-1 |
| chr8_4 | exon | 15435254 | 15435517 | 15435254 | ID=Msa1315850-mRNA-1:exon:5941;Parent=Msa1315850-mRNA-1 |
| chr8_4 | exon | 15437011 | 15437776 | 15437011 | ID=Msa1315850-mRNA-1:exon:5942;Parent=Msa1315850-mRNA-1 |
| chr8_4 | CDS | 15434699 | 15434944 | 15434699 | ID=Msa1315850-mRNA-1:cds;Parent=Msa1315850-mRNA-1 |
| chr8_4 | CDS | 15435254 | 15435517 | 15435254 | ID=Msa1315850-mRNA-1:cds;Parent=Msa1315850-mRNA-1 |
| chr8_4 | CDS | 15437011 | 15437490 | 15437011 | ID=Msa1315850-mRNA-1:cds;Parent=Msa1315850-mRNA-1 |
| chr8_4 | three_prime_UTR | 15437491 | 15437776 | 15437491 | ID=Msa1315850-mRNA-1:three_prime_utr;Parent=Msa1315850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
