AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422820 MtrunA17_Chr3g0134981 96.659 449 15 0 1 449 1 449 0.0 895
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422820 AT1G27480.1 59.059 425 164 4 10 431 4 421 0.0 518

Find 95 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTAGGTCGTTTAGGAATT+TGG 0.093532 tig0025489:-43955 None:intergenic
AAAATGGATGGTTTAGATTA+TGG 0.209097 tig0025489:+42448 Msa1422820:CDS
AAAATTAAATTTGCAGATAA+TGG 0.219301 tig0025489:-44812 None:intergenic
AAGAAGAAGGGTTTCGATTA+AGG 0.254545 tig0025489:-44067 None:intergenic
GTTGCACTTGATGAAATAAT+TGG 0.291740 tig0025489:+44653 Msa1422820:CDS
TTAATCGAAACCCTTCTTCT+TGG 0.309291 tig0025489:+44069 Msa1422820:CDS
TCAAATTCTTTAGGTCGTTT+AGG 0.309491 tig0025489:-43962 None:intergenic
TTATCAATATCAAATATCTT+AGG 0.316150 tig0025489:-44263 None:intergenic
TGTTGGCACTTGAATCTCTA+TGG 0.323866 tig0025489:+44555 Msa1422820:CDS
CTTTGTTTCTAGTGAAGCTT+TGG 0.328266 tig0025489:-42169 None:intergenic
CTCATGCTCAACTTGATTTG+AGG 0.335869 tig0025489:+44696 Msa1422820:CDS
ATACCATGGATCACAAATTA+AGG 0.343972 tig0025489:-42409 None:intergenic
TGCGCTAAATAGCTTCTATA+TGG 0.354848 tig0025489:-44302 None:intergenic
CTGTGTGAGACAAGTATTAC+TGG 0.359637 tig0025489:-44017 None:intergenic
GGTAGAAGGTTTATATTTAG+TGG 0.367636 tig0025489:-42388 None:intergenic
GGATCACAAATTAAGGTAGA+AGG 0.371811 tig0025489:-42402 None:intergenic
GTTGTTGTTGCTTGTGCTAA+TGG 0.373911 tig0025489:-42307 None:intergenic
GTGCGTATGACTTGTATTAT+AGG 0.376436 tig0025489:+44425 Msa1422820:CDS
ATATGAGTTGCATATTTAGT+AGG 0.380193 tig0025489:-42109 None:intergenic
AAGCTATTTAGCGCATGATA+TGG 0.385056 tig0025489:+44310 Msa1422820:CDS
TTTGCATCAGGCAATACTTT+GGG 0.393921 tig0025489:+44164 Msa1422820:CDS
GAACAGCTTGGTTACATAGA+TGG 0.397233 tig0025489:+43858 Msa1422820:CDS
TAGACCATATCGAAAATCAT+AGG 0.397497 tig0025489:-43901 None:intergenic
TACTTGAAAGTTATTAAGAT+TGG 0.398069 tig0025489:+44596 Msa1422820:CDS
ATAGATGGTGAAAATCTGTT+TGG 0.403610 tig0025489:+43873 Msa1422820:CDS
TTATAGCACTTTCTGCTCCA+TGG 0.410868 tig0025489:+44114 Msa1422820:CDS
ATATCAAATATCTTAGGATT+AGG 0.419667 tig0025489:-44257 None:intergenic
CTACCTTAATTTGTGATCCA+TGG 0.426147 tig0025489:+42406 Msa1422820:CDS
ACTAGCAAAGGGTTTACTAA+TGG 0.433212 tig0025489:-44191 None:intergenic
GAGACACGTGTCCCTAGCTT+TGG 0.437492 tig0025489:+42576 Msa1422820:CDS
TATAGCACTTTCTGCTCCAT+GGG 0.439917 tig0025489:+44115 Msa1422820:CDS
TATTACTGGCTTCCCTCCAT+TGG 0.440820 tig0025489:-44003 None:intergenic
CTGTTCTAATGATTCTACTA+AGG 0.448413 tig0025489:-43841 None:intergenic
GGTAAAATGCGAGTTTCATA+AGG 0.448911 tig0025489:-44374 None:intergenic
AGTTGGTTCCCTCCATTACC+TGG 0.449098 tig0025489:-42351 None:intergenic
TTCCTATAAAACAATTCCTC+TGG 0.453117 tig0025489:-44464 None:intergenic
AATTTCTTGCGCCAAGAAGA+AGG 0.458486 tig0025489:-44080 None:intergenic
GTTCATTTCTTACTAGCAAA+GGG 0.458490 tig0025489:-44202 None:intergenic
ATACAAGTCATACGCACTTC+CGG 0.459063 tig0025489:-44419 None:intergenic
TTACCTGGTATTAGTATCAC+TGG 0.464879 tig0025489:-42336 None:intergenic
CATACGAGAAGCAAAACATT+TGG 0.473192 tig0025489:-42502 None:intergenic
TGAAAGTTATTAAGATTGGT+GGG 0.480822 tig0025489:+44600 Msa1422820:CDS
TGTTCATTTCTTACTAGCAA+AGG 0.481119 tig0025489:-44203 None:intergenic
TTGAAAGTTATTAAGATTGG+TGG 0.484679 tig0025489:+44599 Msa1422820:CDS
TACTTGTGTAGGCTTGTCAC+AGG 0.491877 tig0025489:+43807 Msa1422820:intron
ATACTTGTCTCACACAGCTT+AGG 0.493585 tig0025489:+44023 Msa1422820:CDS
CTTGTCTCACACAGCTTAGG+AGG 0.497176 tig0025489:+44026 Msa1422820:CDS
GAGGAAGTAGAACCAAAGCT+AGG 0.502927 tig0025489:-42588 None:intergenic
GTAGAATCATTAGAACAGCT+TGG 0.503633 tig0025489:+43846 Msa1422820:CDS
GTGATACTAATACCAGGTAA+TGG 0.511981 tig0025489:+42339 Msa1422820:CDS
AATTTGGAACCAACTTGAGA+TGG 0.518350 tig0025489:-43939 None:intergenic
TGTGAACATGGTGAGCTTGT+TGG 0.520209 tig0025489:+44538 Msa1422820:CDS
CCATCACCATAAGAAAACTC+TGG 0.520727 tig0025489:-44506 None:intergenic
CTACAATTTCAAAACATCAA+TGG 0.521982 tig0025489:-44915 None:intergenic
CGATATGGTCTAGCTGCACC+AGG 0.525375 tig0025489:+43912 Msa1422820:CDS
ATGACTTGTATTATAGGAAA+GGG 0.531822 tig0025489:+44431 Msa1422820:CDS
GGGACACGTGTCTCCACTCC+AGG 0.536426 tig0025489:-42567 None:intergenic
CATCACCATAAGAAAACTCT+GGG 0.540159 tig0025489:-44505 None:intergenic
TTCTTGAAAGGAGGATACCA+TGG 0.540741 tig0025489:-42423 None:intergenic
CACTAACAGTGTTAATGTGT+TGG 0.541443 tig0025489:-42253 None:intergenic
GTATTAGTATCACTGGATTG+AGG 0.543116 tig0025489:-42329 None:intergenic
ATTTGGAACCAACTTGAGAT+GGG 0.545508 tig0025489:-43938 None:intergenic
ATTTCTTGCGCCAAGAAGAA+GGG 0.548066 tig0025489:-44079 None:intergenic
TATGACTTGTATTATAGGAA+AGG 0.548615 tig0025489:+44430 Msa1422820:CDS
TAGGATTAGGCAAAAGCCAT+AGG 0.550005 tig0025489:-44244 None:intergenic
TAGGCTTGTCACAGGGTACA+TGG 0.553390 tig0025489:+43815 Msa1422820:intron
TCATCAACAGTTCCACCCCA+TGG 0.553701 tig0025489:-44131 None:intergenic
GATAGCGAAAATAGATGCAC+CGG 0.558129 tig0025489:+44400 Msa1422820:CDS
GAAAGTTATTAAGATTGGTG+GGG 0.564534 tig0025489:+44601 Msa1422820:CDS
GAAGCAAAACATTTGGTGAA+AGG 0.565167 tig0025489:-42495 None:intergenic
AAAGCTAGTACTTGATGCGA+TGG 0.565432 tig0025489:+44779 Msa1422820:three_prime_UTR
TGTTCTAATGATTCTACTAA+GGG 0.567395 tig0025489:-43840 None:intergenic
GCACTTTCTGCTCCATGGGG+TGG 0.574507 tig0025489:+44119 Msa1422820:CDS
AGGAAGTAGAACCAAAGCTA+GGG 0.574724 tig0025489:-42587 None:intergenic
AGACCATATCGAAAATCATA+GGG 0.574772 tig0025489:-43900 None:intergenic
GCTTGTGCTAATGGCAACAT+TGG 0.575689 tig0025489:-42298 None:intergenic
AGGATTAAGATAAAGAAGAG+AGG 0.580569 tig0025489:-42607 None:intergenic
CACATTAACACTGTTAGTGA+TGG 0.588711 tig0025489:+42257 Msa1422820:CDS
GAACTTCTGAGAGTAACCTA+TGG 0.593616 tig0025489:+44228 Msa1422820:CDS
CCAACTTGAGATGGGTGACC+TGG 0.599702 tig0025489:-43930 None:intergenic
ATACTAATACCAGGTAATGG+AGG 0.600946 tig0025489:+42342 Msa1422820:CDS
AAAGCAAGCAATTCCAATGG+AGG 0.603247 tig0025489:+43990 Msa1422820:CDS
CCAGGTCACCCATCTCAAGT+TGG 0.608401 tig0025489:+43930 Msa1422820:CDS
TGGTGACGGAACTGTGAACA+TGG 0.612065 tig0025489:+44526 Msa1422820:CDS
ACTTGTGTAGGCTTGTCACA+GGG 0.624634 tig0025489:+43808 Msa1422820:intron
AAGCAAGCAATTCCAATGGA+GGG 0.626020 tig0025489:+43991 Msa1422820:CDS
TACTAATACCAGGTAATGGA+GGG 0.631997 tig0025489:+42343 Msa1422820:CDS
TGTTTCGTTTCACTCAAACA+TGG 0.636137 tig0025489:-42142 None:intergenic
ATAGCACTTTCTGCTCCATG+GGG 0.637994 tig0025489:+44116 Msa1422820:CDS
AATCCAGTGATACTAATACC+AGG 0.663374 tig0025489:+42333 Msa1422820:CDS
AAATAAACTTACTTAAGACG+AGG 0.677738 tig0025489:-42627 None:intergenic
TCACCATAAGAAAACTCTGG+GGG 0.705714 tig0025489:-44503 None:intergenic
CATTTGATGAGAAATGATCG+TGG 0.720069 tig0025489:+44735 Msa1422820:exon
AAAGGGTGTGAAGACTCCAG+AGG 0.728760 tig0025489:+44448 Msa1422820:CDS
ATCACCATAAGAAAACTCTG+GGG 0.774332 tig0025489:-44504 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATCTTTCAATTATTATA+TGG + tig0025489:43378-43397 Msa1422820:intron 10.0%
!! TTATCTTTCAATTATTATAT+GGG + tig0025489:43379-43398 Msa1422820:intron 10.0%
!! TTCTATAAAAAGTTATTATA+TGG + tig0025489:43760-43779 Msa1422820:intron 10.0%
!! AGGAAATAAAACAAAATTTA+AGG - tig0025489:42670-42689 None:intergenic 15.0%
!! TTATCAATATCAAATATCTT+AGG - tig0025489:44266-44285 None:intergenic 15.0%
!! AAAATTAAATTTGCAGATAA+TGG - tig0025489:44815-44834 None:intergenic 15.0%
!!! TGACATTTTATTATTGATAT+AGG + tig0025489:44851-44870 Msa1422820:three_prime_UTR 15.0%
!!! ATTTTTTTTTATCGTGATGA+AGG + tig0025489:42206-42225 Msa1422820:exon 20.0%
!! ATTAAAGTTTCACTAAATCA+AGG - tig0025489:42780-42799 None:intergenic 20.0%
!!! ATTCATGTTTGTCTTTTTTT+AGG + tig0025489:42956-42975 Msa1422820:intron 20.0%
!!! AATTTTTTTTTGGTGTTAAC+CGG - tig0025489:43184-43203 None:intergenic 20.0%
!!! AAAAGTGTCTTTTTTTTCTT+TGG - tig0025489:43598-43617 None:intergenic 20.0%
!! TTTACATCTATATAAAGCTA+CGG + tig0025489:43616-43635 Msa1422820:intron 20.0%
!! AACATTACTGTATTATTGTA+AGG - tig0025489:43788-43807 None:intergenic 20.0%
!!! CTTTTTCTATCAAATTCTTT+AGG - tig0025489:43974-43993 None:intergenic 20.0%
!! ATATCAAATATCTTAGGATT+AGG - tig0025489:44260-44279 None:intergenic 20.0%
!!! GTTGATTTTCTTAAAGATAT+TGG + tig0025489:44332-44351 Msa1422820:CDS 20.0%
!! TACTTGAAAGTTATTAAGAT+TGG + tig0025489:44596-44615 Msa1422820:CDS 20.0%
! AAAATGGATGGTTTAGATTA+TGG + tig0025489:42448-42467 Msa1422820:CDS 25.0%
! GTGCATTAAAAAAATCATCA+AGG - tig0025489:42548-42567 None:intergenic 25.0%
! AAATAAACTTACTTAAGACG+AGG - tig0025489:42630-42649 None:intergenic 25.0%
!!! TTATTTCCTGTACTTTGTTT+TGG + tig0025489:42681-42700 Msa1422820:intron 25.0%
! ATATTATCAAATTAGTCCGA+AGG - tig0025489:42994-43013 None:intergenic 25.0%
! AAAAGATTTAACATTGCTCA+TGG - tig0025489:43090-43109 None:intergenic 25.0%
!! ATGAGCAATGTTAAATCTTT+TGG + tig0025489:43089-43108 Msa1422820:intron 25.0%
!! TGAGCAATGTTAAATCTTTT+GGG + tig0025489:43090-43109 Msa1422820:intron 25.0%
!!! ATTTTTTTTTGGTGTTAACC+GGG - tig0025489:43183-43202 None:intergenic 25.0%
! GACGAGAAATTATAAATTGT+TGG - tig0025489:43249-43268 None:intergenic 25.0%
! CTTTCAATTATTATATGGGA+AGG + tig0025489:43383-43402 Msa1422820:intron 25.0%
!!! ATCTAGAAAAGTGTTCATAT+AGG - tig0025489:43439-43458 None:intergenic 25.0%
!! CTTTTCTAGATAGATTGAAT+CGG + tig0025489:43448-43467 Msa1422820:intron 25.0%
! TGTTCTAATGATTCTACTAA+GGG - tig0025489:43843-43862 None:intergenic 25.0%
!! TATGACTTGTATTATAGGAA+AGG + tig0025489:44430-44449 Msa1422820:CDS 25.0%
!! ATGACTTGTATTATAGGAAA+GGG + tig0025489:44431-44450 Msa1422820:CDS 25.0%
! TTGAAAGTTATTAAGATTGG+TGG + tig0025489:44599-44618 Msa1422820:CDS 25.0%
! TGAAAGTTATTAAGATTGGT+GGG + tig0025489:44600-44619 Msa1422820:CDS 25.0%
! CTACAATTTCAAAACATCAA+TGG - tig0025489:44918-44937 None:intergenic 25.0%
!!! GTGAGTTTTGATATTAAGAA+TGG + tig0025489:44937-44956 Msa1422820:three_prime_UTR 25.0%
GGTAGAAGGTTTATATTTAG+TGG - tig0025489:42391-42410 None:intergenic 30.0%
ATACCATGGATCACAAATTA+AGG - tig0025489:42412-42431 None:intergenic 30.0%
!! CATCCATTTTTCTTCTTGAA+AGG - tig0025489:42438-42457 None:intergenic 30.0%
CTTTCAAGAAGAAAAATGGA+TGG + tig0025489:42436-42455 Msa1422820:CDS 30.0%
!!! GATGATTTTTTTAATGCACC+TGG + tig0025489:42549-42568 Msa1422820:CDS 30.0%
AGGATTAAGATAAAGAAGAG+AGG - tig0025489:42610-42629 None:intergenic 30.0%
AAACTTCCAAAACAAAGTAC+AGG - tig0025489:42690-42709 None:intergenic 30.0%
CATTATGAGATCATCCAATT+TGG + tig0025489:42740-42759 Msa1422820:intron 30.0%
ATAATAACTAGAGCTCATGA+TGG - tig0025489:42863-42882 None:intergenic 30.0%
! TAGGCTAAGTTTTTAACCTT+CGG + tig0025489:42975-42994 Msa1422820:intron 30.0%
! GAGCAATGTTAAATCTTTTG+GGG + tig0025489:43091-43110 Msa1422820:intron 30.0%
! AGCAATGTTAAATCTTTTGG+GGG + tig0025489:43092-43111 Msa1422820:intron 30.0%
TGCTAAAAGACTATACTGTT+TGG + tig0025489:43213-43232 Msa1422820:intron 30.0%
TAATTTCTCGTCAATTTCGT+AGG + tig0025489:43257-43276 Msa1422820:intron 30.0%
TTAGAACCTTGAAATTGTAG+GGG - tig0025489:43304-43323 None:intergenic 30.0%
GTTAGAACCTTGAAATTGTA+GGG - tig0025489:43305-43324 None:intergenic 30.0%
!!! AGTGTCTTTTTTTTCTTTGG+TGG - tig0025489:43595-43614 None:intergenic 30.0%
! TACAGTAATGTTACTTGTGT+AGG + tig0025489:43796-43815 Msa1422820:intron 30.0%
CTGTTCTAATGATTCTACTA+AGG - tig0025489:43844-43863 None:intergenic 30.0%
ATAGATGGTGAAAATCTGTT+TGG + tig0025489:43873-43892 Msa1422820:CDS 30.0%
AGACCATATCGAAAATCATA+GGG - tig0025489:43903-43922 None:intergenic 30.0%
TAGACCATATCGAAAATCAT+AGG - tig0025489:43904-43923 None:intergenic 30.0%
TCAAATTCTTTAGGTCGTTT+AGG - tig0025489:43965-43984 None:intergenic 30.0%
!! GAAATGTTTACTTTTGCATC+AGG + tig0025489:44152-44171 Msa1422820:CDS 30.0%
GTTCATTTCTTACTAGCAAA+GGG - tig0025489:44205-44224 None:intergenic 30.0%
TGTTCATTTCTTACTAGCAA+AGG - tig0025489:44206-44225 None:intergenic 30.0%
!!! TAAAGATATTGGTTTTCCTG+AGG + tig0025489:44343-44362 Msa1422820:CDS 30.0%
!!! AAAGATATTGGTTTTCCTGA+GGG + tig0025489:44344-44363 Msa1422820:CDS 30.0%
TTCCTATAAAACAATTCCTC+TGG - tig0025489:44467-44486 None:intergenic 30.0%
!! GAGGAATTGTTTTATAGGAA+TGG + tig0025489:44467-44486 Msa1422820:CDS 30.0%
GAAAGTTATTAAGATTGGTG+GGG + tig0025489:44601-44620 Msa1422820:CDS 30.0%
GTTGCACTTGATGAAATAAT+TGG + tig0025489:44653-44672 Msa1422820:CDS 30.0%
TGTTTCGTTTCACTCAAACA+TGG - tig0025489:42145-42164 None:intergenic 35.0%
!! CTTTGTTTCTAGTGAAGCTT+TGG - tig0025489:42172-42191 None:intergenic 35.0%
CACTAACAGTGTTAATGTGT+TGG - tig0025489:42256-42275 None:intergenic 35.0%
CACATTAACACTGTTAGTGA+TGG + tig0025489:42257-42276 Msa1422820:CDS 35.0%
GTATTAGTATCACTGGATTG+AGG - tig0025489:42332-42351 None:intergenic 35.0%
AATCCAGTGATACTAATACC+AGG + tig0025489:42333-42352 Msa1422820:CDS 35.0%
TTACCTGGTATTAGTATCAC+TGG - tig0025489:42339-42358 None:intergenic 35.0%
GTGATACTAATACCAGGTAA+TGG + tig0025489:42339-42358 Msa1422820:CDS 35.0%
! ATACTAATACCAGGTAATGG+AGG + tig0025489:42342-42361 Msa1422820:CDS 35.0%
!! TACTAATACCAGGTAATGGA+GGG + tig0025489:42343-42362 Msa1422820:CDS 35.0%
!!! TGGTTAGTTTTGCTTCTAGT+TGG - tig0025489:42371-42390 None:intergenic 35.0%
GGATCACAAATTAAGGTAGA+AGG - tig0025489:42405-42424 None:intergenic 35.0%
!! CTACCTTAATTTGTGATCCA+TGG + tig0025489:42406-42425 Msa1422820:CDS 35.0%
!! CCATTTTTCTTCTTGAAAGG+AGG - tig0025489:42435-42454 None:intergenic 35.0%
CCTCCTTTCAAGAAGAAAAA+TGG + tig0025489:42432-42451 Msa1422820:CDS 35.0%
! GAAGCAAAACATTTGGTGAA+AGG - tig0025489:42498-42517 None:intergenic 35.0%
CATACGAGAAGCAAAACATT+TGG - tig0025489:42505-42524 None:intergenic 35.0%
!!! TTTTTTTAATGCACCTGGAG+TGG + tig0025489:42554-42573 Msa1422820:CDS 35.0%
AGATCATCCAATTTGGTTGT+GGG + tig0025489:42747-42766 Msa1422820:intron 35.0%
GTTTCACTAAATCAAGGACT+TGG - tig0025489:42774-42793 None:intergenic 35.0%
ACAATACCCCTACAATTTCA+AGG + tig0025489:43295-43314 Msa1422820:intron 35.0%
GGTTAGAACCTTGAAATTGT+AGG - tig0025489:43306-43325 None:intergenic 35.0%
! ACAATTTCAAGGTTCTAACC+TGG + tig0025489:43306-43325 Msa1422820:intron 35.0%
TTATCAATGAGTGTATCACC+AGG - tig0025489:43327-43346 None:intergenic 35.0%
GACAGTGCATAAAATATGCA+AGG + tig0025489:43554-43573 Msa1422820:intron 35.0%
!!! GTCTTTTTTTTCTTTGGTGG+TGG - tig0025489:43592-43611 None:intergenic 35.0%
TGCATTAATCAGTGTTCTCA+TGG + tig0025489:43703-43722 Msa1422820:intron 35.0%
ATTAATCAGTGTTCTCATGG+CGG + tig0025489:43706-43725 Msa1422820:intron 35.0%
GTAGAATCATTAGAACAGCT+TGG + tig0025489:43846-43865 Msa1422820:CDS 35.0%
! ATTTGGAACCAACTTGAGAT+GGG - tig0025489:43941-43960 None:intergenic 35.0%
! AATTTGGAACCAACTTGAGA+TGG - tig0025489:43942-43961 None:intergenic 35.0%
CTTTAGGTCGTTTAGGAATT+TGG - tig0025489:43958-43977 None:intergenic 35.0%
GAAAAAGCAAGCAATTCCAA+TGG + tig0025489:43987-44006 Msa1422820:CDS 35.0%
AAGAAGAAGGGTTTCGATTA+AGG - tig0025489:44070-44089 None:intergenic 35.0%
TTAATCGAAACCCTTCTTCT+TGG + tig0025489:44069-44088 Msa1422820:CDS 35.0%
! TTTTGCATCAGGCAATACTT+TGG + tig0025489:44163-44182 Msa1422820:CDS 35.0%
TTTGCATCAGGCAATACTTT+GGG + tig0025489:44164-44183 Msa1422820:CDS 35.0%
ACTAGCAAAGGGTTTACTAA+TGG - tig0025489:44194-44213 None:intergenic 35.0%
TGCGCTAAATAGCTTCTATA+TGG - tig0025489:44305-44324 None:intergenic 35.0%
AAGCTATTTAGCGCATGATA+TGG + tig0025489:44310-44329 Msa1422820:CDS 35.0%
!!! AAGATATTGGTTTTCCTGAG+GGG + tig0025489:44345-44364 Msa1422820:CDS 35.0%
GGTAAAATGCGAGTTTCATA+AGG - tig0025489:44377-44396 None:intergenic 35.0%
! GCATCTATTTTCGCTATCAA+AGG - tig0025489:44398-44417 None:intergenic 35.0%
! GTGCGTATGACTTGTATTAT+AGG + tig0025489:44425-44444 Msa1422820:CDS 35.0%
!! CTCCAGAGGAATTGTTTTAT+AGG + tig0025489:44462-44481 Msa1422820:CDS 35.0%
ATCACCATAAGAAAACTCTG+GGG - tig0025489:44507-44526 None:intergenic 35.0%
CATCACCATAAGAAAACTCT+GGG - tig0025489:44508-44527 None:intergenic 35.0%
!!! TTTTCTTATGGTGATGGTGA+CGG + tig0025489:44512-44531 Msa1422820:CDS 35.0%
CATTTGATGAGAAATGATCG+TGG + tig0025489:44735-44754 Msa1422820:exon 35.0%
! GTTGTTGTTGCTTGTGCTAA+TGG - tig0025489:42310-42329 None:intergenic 40.0%
TTCTTGAAAGGAGGATACCA+TGG - tig0025489:42426-42445 None:intergenic 40.0%
AGGAAGTAGAACCAAAGCTA+GGG - tig0025489:42590-42609 None:intergenic 40.0%
GAGATCATCCAATTTGGTTG+TGG + tig0025489:42746-42765 Msa1422820:intron 40.0%
CGATCGAATTGACAAACTCA+CGG - tig0025489:42823-42842 None:intergenic 40.0%
! AGAGCTCATGATGGAAAGTT+TGG - tig0025489:42854-42873 None:intergenic 40.0%
TTCAGCTTAACCAAAGATCC+TGG + tig0025489:43053-43072 Msa1422820:intron 40.0%
TAGATTCGAACCAGGATCTT+TGG - tig0025489:43066-43085 None:intergenic 40.0%
TACAAAGACTAATCCCTCGA+AGG - tig0025489:43141-43160 None:intergenic 40.0%
TGGGAAGGAATATAATGCAG+TGG + tig0025489:43398-43417 Msa1422820:intron 40.0%
!!! TTTTTTTCTTTGGTGGTGGC+CGG - tig0025489:43588-43607 None:intergenic 40.0%
!! TTCTCATGGCGGACAAAATA+GGG + tig0025489:43717-43736 Msa1422820:intron 40.0%
GAACAGCTTGGTTACATAGA+TGG + tig0025489:43858-43877 Msa1422820:CDS 40.0%
! GCTCCCTATGATTTTCGATA+TGG + tig0025489:43897-43916 Msa1422820:CDS 40.0%
AAAGCAAGCAATTCCAATGG+AGG + tig0025489:43990-44009 Msa1422820:CDS 40.0%
AAGCAAGCAATTCCAATGGA+GGG + tig0025489:43991-44010 Msa1422820:CDS 40.0%
CTGTGTGAGACAAGTATTAC+TGG - tig0025489:44020-44039 None:intergenic 40.0%
ATACTTGTCTCACACAGCTT+AGG + tig0025489:44023-44042 Msa1422820:CDS 40.0%
ATTTCTTGCGCCAAGAAGAA+GGG - tig0025489:44082-44101 None:intergenic 40.0%
AATTTCTTGCGCCAAGAAGA+AGG - tig0025489:44083-44102 None:intergenic 40.0%
TTATAGCACTTTCTGCTCCA+TGG + tig0025489:44114-44133 Msa1422820:CDS 40.0%
TATAGCACTTTCTGCTCCAT+GGG + tig0025489:44115-44134 Msa1422820:CDS 40.0%
! GAACTTCTGAGAGTAACCTA+TGG + tig0025489:44228-44247 Msa1422820:CDS 40.0%
TAGGATTAGGCAAAAGCCAT+AGG - tig0025489:44247-44266 None:intergenic 40.0%
!!! AGATATTGGTTTTCCTGAGG+GGG + tig0025489:44346-44365 Msa1422820:CDS 40.0%
GATAGCGAAAATAGATGCAC+CGG + tig0025489:44400-44419 Msa1422820:CDS 40.0%
ATACAAGTCATACGCACTTC+CGG - tig0025489:44422-44441 None:intergenic 40.0%
TCACCATAAGAAAACTCTGG+GGG - tig0025489:44506-44525 None:intergenic 40.0%
CCATCACCATAAGAAAACTC+TGG - tig0025489:44509-44528 None:intergenic 40.0%
! CCAGAGTTTTCTTATGGTGA+TGG + tig0025489:44506-44525 Msa1422820:CDS 40.0%
TGTTGGCACTTGAATCTCTA+TGG + tig0025489:44555-44574 Msa1422820:CDS 40.0%
! CTCATGCTCAACTTGATTTG+AGG + tig0025489:44696-44715 Msa1422820:CDS 40.0%
AAAGCTAGTACTTGATGCGA+TGG + tig0025489:44779-44798 Msa1422820:three_prime_UTR 40.0%
GCTTGTGCTAATGGCAACAT+TGG - tig0025489:42301-42320 None:intergenic 45.0%
GAGGAAGTAGAACCAAAGCT+AGG - tig0025489:42591-42610 None:intergenic 45.0%
ACTTGGTCCCACAACCAAAT+TGG - tig0025489:42757-42776 None:intergenic 45.0%
! GCTCATGATGGAAAGTTTGG+TGG - tig0025489:42851-42870 None:intergenic 45.0%
!! GCAAGAGCGTTTGAATGAGA+TGG + tig0025489:43018-43037 Msa1422820:intron 45.0%
CTTTGTATAGTTGCGTGCAG+AGG + tig0025489:43154-43173 Msa1422820:intron 45.0%
AATATGCAAGGTTCGAACCC+CGG + tig0025489:43566-43585 Msa1422820:intron 45.0%
!!! TTTTTTCTTTGGTGGTGGCC+GGG - tig0025489:43587-43606 None:intergenic 45.0%
!! GTTCTCATGGCGGACAAAAT+AGG + tig0025489:43716-43735 Msa1422820:intron 45.0%
TACTTGTGTAGGCTTGTCAC+AGG + tig0025489:43807-43826 Msa1422820:intron 45.0%
ACTTGTGTAGGCTTGTCACA+GGG + tig0025489:43808-43827 Msa1422820:intron 45.0%
!! TATTACTGGCTTCCCTCCAT+TGG - tig0025489:44006-44025 None:intergenic 45.0%
ATAGCACTTTCTGCTCCATG+GGG + tig0025489:44116-44135 Msa1422820:CDS 45.0%
TCATAAGGATAAACCCCCTC+AGG - tig0025489:44362-44381 None:intergenic 45.0%
TGTGAACATGGTGAGCTTGT+TGG + tig0025489:44538-44557 Msa1422820:CDS 45.0%
!! AAAAAAAATATATAATTACT+GGG - tig0025489:42195-42214 None:intergenic 5.0%
!! AAAAAAAAATATATAATTAC+TGG - tig0025489:42196-42215 None:intergenic 5.0%
!!! AAATATTTTCAATTTTTTTT+TGG - tig0025489:43194-43213 None:intergenic 5.0%
! AGTTGGTTCCCTCCATTACC+TGG - tig0025489:42354-42373 None:intergenic 50.0%
CTCATGGCTAGATTCGAACC+AGG - tig0025489:43074-43093 None:intergenic 50.0%
GAGAACTTTGCCACCCATTG+CGG + tig0025489:43114-43133 Msa1422820:intron 50.0%
!!! TTTTTCTTTGGTGGTGGCCG+GGG - tig0025489:43586-43605 None:intergenic 50.0%
TAGGCTTGTCACAGGGTACA+TGG + tig0025489:43815-43834 Msa1422820:intron 50.0%
CTTGTCTCACACAGCTTAGG+AGG + tig0025489:44026-44045 Msa1422820:CDS 50.0%
TCATCAACAGTTCCACCCCA+TGG - tig0025489:44134-44153 None:intergenic 50.0%
! AAAGGGTGTGAAGACTCCAG+AGG + tig0025489:44448-44467 Msa1422820:CDS 50.0%
! GAGCCCCCAGAGTTTTCTTA+TGG + tig0025489:44500-44519 Msa1422820:CDS 50.0%
!! TGGTGACGGAACTGTGAACA+TGG + tig0025489:44526-44545 Msa1422820:CDS 50.0%
GAGACACGTGTCCCTAGCTT+TGG + tig0025489:42576-42595 Msa1422820:CDS 55.0%
ATCCCTCGAAGGACCGCAAT+GGG - tig0025489:43130-43149 None:intergenic 55.0%
AATCCCTCGAAGGACCGCAA+TGG - tig0025489:43131-43150 None:intergenic 55.0%
AGTTGCGTGCAGAGGATACC+CGG + tig0025489:43162-43181 Msa1422820:intron 55.0%
TGAGCCTAGCTCAGTTGGCA+GGG + tig0025489:43532-43551 Msa1422820:intron 55.0%
CGATATGGTCTAGCTGCACC+AGG + tig0025489:43912-43931 Msa1422820:CDS 55.0%
CCAACTTGAGATGGGTGACC+TGG - tig0025489:43933-43952 None:intergenic 55.0%
CCAGGTCACCCATCTCAAGT+TGG + tig0025489:43930-43949 Msa1422820:CDS 55.0%
CACCCATTGCGGTCCTTCGA+GGG + tig0025489:43125-43144 Msa1422820:intron 60.0%
CCAACTGAGCTAGGCTCACG+AGG - tig0025489:43530-43549 None:intergenic 60.0%
CCTCGTGAGCCTAGCTCAGT+TGG + tig0025489:43527-43546 Msa1422820:intron 60.0%
GTGAGCCTAGCTCAGTTGGC+AGG + tig0025489:43531-43550 Msa1422820:intron 60.0%
CTGTCCCTGCCAACTGAGCT+AGG - tig0025489:43539-43558 None:intergenic 60.0%
GCACTTTCTGCTCCATGGGG+TGG + tig0025489:44119-44138 Msa1422820:CDS 60.0%
GGGACACGTGTCTCCACTCC+AGG - tig0025489:42570-42589 None:intergenic 65.0%
CCTCGAAGGACCGCAATGGG+TGG - tig0025489:43127-43146 None:intergenic 65.0%
CCACCCATTGCGGTCCTTCG+AGG + tig0025489:43124-43143 Msa1422820:intron 65.0%
Chromosome Type Strat End Strand Name
tig0025489 gene 42112 44960 42112 ID=Msa1422820;Name=Msa1422820
tig0025489 mRNA 42112 44960 42112 ID=Msa1422820-mRNA-1;Parent=Msa1422820;Name=Msa1422820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=110|1|1|1|1|1|2|209|449
tig0025489 exon 42112 42637 42112 ID=Msa1422820-mRNA-1:exon:2857;Parent=Msa1422820-mRNA-1
tig0025489 exon 43818 44960 43818 ID=Msa1422820-mRNA-1:exon:2858;Parent=Msa1422820-mRNA-1
tig0025489 five_prime_UTR 42112 42221 42112 ID=Msa1422820-mRNA-1:five_prime_utr;Parent=Msa1422820-mRNA-1
tig0025489 CDS 42222 42637 42222 ID=Msa1422820-mRNA-1:cds;Parent=Msa1422820-mRNA-1
tig0025489 CDS 43818 44751 43818 ID=Msa1422820-mRNA-1:cds;Parent=Msa1422820-mRNA-1
tig0025489 three_prime_UTR 44752 44960 44752 ID=Msa1422820-mRNA-1:three_prime_utr;Parent=Msa1422820-mRNA-1
Gene Sequence

>Msa1422820

ATGAAGGAACATAGTCTCAAAATTTGCATTACCAACACATTAACACTGTTAGTGATGGTATCATTAATTTGTTGCACCAATGTTGCCATTAGCACAAGCAACAACAACCTCAATCCAGTGATACTAATACCAGGTAATGGAGGGAACCAACTAGAAGCAAAACTAACCACTAAATATAAACCTTCTACCTTAATTTGTGATCCATGGTATCCTCCTTTCAAGAAGAAAAATGGATGGTTTAGATTATGGTTTGACTCAAGTGTCTTACTTGCTCCTTTCACCAAATGTTTTGCTTCTCGTATGACTCTTTATTATGATCAAGACCTTGATGATTTTTTTAATGCACCTGGAGTGGAGACACGTGTCCCTAGCTTTGGTTCTACTTCCTCTCTTCTTTATCTTAATCCTCGTCTTAAGCTTGTCACAGGGTACATGGCGCCCTTAGTAGAATCATTAGAACAGCTTGGTTACATAGATGGTGAAAATCTGTTTGGAGCTCCCTATGATTTTCGATATGGTCTAGCTGCACCAGGTCACCCATCTCAAGTTGGTTCCAAATTCCTAAACGACCTAAAGAATTTGATAGAAAAAGCAAGCAATTCCAATGGAGGGAAGCCAGTAATACTTGTCTCACACAGCTTAGGAGGTTTATTTGTTCTCGAACTCCTTAATCGAAACCCTTCTTCTTGGCGCAAGAAATTTATTAAACATTTTATAGCACTTTCTGCTCCATGGGGTGGAACTGTTGATGAAATGTTTACTTTTGCATCAGGCAATACTTTGGGAGTGCCATTAGTAAACCCTTTGCTAGTAAGAAATGAACAGAGAACTTCTGAGAGTAACCTATGGCTTTTGCCTAATCCTAAGATATTTGATATTGATAAATCTTTAGTTACTACTCCATATAGAAGCTATTTAGCGCATGATATGGTTGATTTTCTTAAAGATATTGGTTTTCCTGAGGGGGTTTATCCTTATGAAACTCGCATTTTACCTTTGATAGCGAAAATAGATGCACCGGAAGTGCGTATGACTTGTATTATAGGAAAGGGTGTGAAGACTCCAGAGGAATTGTTTTATAGGAATGGTGATTTTGACGAGCCCCCAGAGTTTTCTTATGGTGATGGTGACGGAACTGTGAACATGGTGAGCTTGTTGGCACTTGAATCTCTATGGAAAGATGAAAAAAATCAGTACTTGAAAGTTATTAAGATTGGTGGGGTGACTCATACTTCAATATTGAAAGATAAAGTTGCACTTGATGAAATAATTGGTGAGATTAGTAGAATTAATTCTCATGCTCAACTTGATTTGAGGAATATTTCTTTAGCTGCATTTGATGAGAAATGA

Protein sequence

>Msa1422820

MKEHSLKICITNTLTLLVMVSLICCTNVAISTSNNNLNPVILIPGNGGNQLEAKLTTKYKPSTLICDPWYPPFKKKNGWFRLWFDSSVLLAPFTKCFASRMTLYYDQDLDDFFNAPGVETRVPSFGSTSSLLYLNPRLKLVTGYMAPLVESLEQLGYIDGENLFGAPYDFRYGLAAPGHPSQVGSKFLNDLKNLIEKASNSNGGKPVILVSHSLGGLFVLELLNRNPSSWRKKFIKHFIALSAPWGGTVDEMFTFASGNTLGVPLVNPLLVRNEQRTSESNLWLLPNPKIFDIDKSLVTTPYRSYLAHDMVDFLKDIGFPEGVYPYETRILPLIAKIDAPEVRMTCIIGKGVKTPEELFYRNGDFDEPPEFSYGDGDGTVNMVSLLALESLWKDEKNQYLKVIKIGGVTHTSILKDKVALDEIIGEISRINSHAQLDLRNISLAAFDEK*