AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476730 MtrunA17_Chr3g0137241 96.345 383 2 2 1 383 1 371 0.0 761
Msa0476730 MtrunA17_Chr1g0149651 66.970 439 86 8 1 383 1 436 0.0 557
Msa0476730 MtrunA17_Chr2g0305101 66.006 353 79 6 31 382 42 354 1.64e-159 454
Msa0476730 MtrunA17_Chr4g0065241 80.078 256 43 3 117 370 69 318 8.71e-149 426
Msa0476730 MtrunA17_Chr5g0398181 67.033 273 78 3 119 385 28 294 1.37e-128 373
Msa0476730 MtrunA17_Chr1g0192791 35.249 261 122 8 119 367 20 245 1.10e-30 119
Msa0476730 MtrunA17_Chr2g0289201 28.102 274 166 4 119 391 118 361 9.15e-29 115
Msa0476730 MtrunA17_Chr1g0151961 32.669 251 139 7 119 367 120 342 1.23e-25 107
Msa0476730 MtrunA17_Chr5g0413201 32.669 251 138 6 119 367 73 294 2.37e-25 105
Msa0476730 MtrunA17_Chr5g0439391 29.032 279 152 7 119 391 47 285 2.20e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476730 AT5G25220.2 65.217 437 80 12 1 383 1 419 0.0 511
Msa0476730 AT5G25220.1 65.138 436 80 12 1 382 1 418 3.39e-180 509
Msa0476730 AT5G11060.1 67.476 412 74 12 1 382 1 382 6.24e-174 492
Msa0476730 AT4G32040.2 62.895 380 126 8 6 383 13 379 5.03e-156 446
Msa0476730 AT4G32040.1 62.895 380 126 8 6 383 13 379 8.39e-156 445
Msa0476730 AT1G62990.1 62.759 290 99 4 96 382 7 290 5.70e-126 366
Msa0476730 AT1G70510.1 33.077 260 137 8 112 367 63 289 2.12e-29 117
Msa0476730 AT1G23380.1 32.616 279 143 9 119 389 86 327 9.76e-29 115
Msa0476730 AT1G70510.2 31.923 260 144 7 112 367 63 293 5.93e-28 112
Msa0476730 AT1G23380.2 32.384 281 143 10 119 389 86 329 7.30e-27 110
Msa0476730 AT4G08150.1 33.205 259 130 8 119 367 135 360 9.79e-26 108
Msa0476730 AT1G62360.1 34.400 250 135 6 119 367 122 343 2.84e-25 106

Find 152 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGTTAATGTGTTAAATAT+TGG 0.253339 3_3:-80641181 None:intergenic
TCTGCTGCCACCATGATATA+AGG 0.271958 3_3:-80640959 None:intergenic
TCACCTATCATTTACTTTGT+TGG 0.277941 3_3:-80640983 None:intergenic
ATCAATAGCTATCTATATTA+TGG 0.294705 3_3:+80636573 Msa0476730:exon
GGTGCTGCAGCTGCAGCTGC+AGG 0.304840 3_3:-80641072 None:intergenic
GATAATAGCATGGGAGGATT+TGG 0.315828 3_3:+80639731 Msa0476730:CDS
TTATATGGAGTATCAATAAA+TGG 0.332298 3_3:-80636439 None:intergenic
ACGTTAATGTGTTAAATATT+GGG 0.333560 3_3:-80641180 None:intergenic
TGCCAGCTGAGCGTCGATCC+TGG 0.345057 3_3:-80637037 None:intergenic
CGATGACTTCGCTGTGGTTT+CGG 0.353018 3_3:-80636837 None:intergenic
TGTACCTGTTAGACTTTGTA+AGG 0.355039 3_3:-80637932 None:intergenic
AAAGGAGATTGGACAGGAAA+TGG 0.358235 3_3:-80636412 None:intergenic
GTACTCTGCGTTAGGACAAC+AGG 0.363398 3_3:+80637083 Msa0476730:CDS
GAAGTGATGAACAACTTATA+TGG 0.369983 3_3:-80636454 None:intergenic
CTTTCCAAACTGCACCTAAC+TGG 0.380352 3_3:+80636674 Msa0476730:CDS
AATTGAAACAGATCAATAAC+TGG 0.381851 3_3:+80640717 Msa0476730:CDS
GTTGTTGTTGTTCTGTGAAA+TGG 0.389827 3_3:-80636624 None:intergenic
TGCCTTTCAGGAAGAGGATA+AGG 0.392331 3_3:+80640667 Msa0476730:intron
CAGTCCTTACAAAGTCTAAC+AGG 0.396414 3_3:+80637928 Msa0476730:CDS
GAGCGTCGATCCTGGGCAAC+TGG 0.397329 3_3:-80637029 None:intergenic
TAAACAACTCGACCACTTCA+TGG 0.399427 3_3:+80637128 Msa0476730:CDS
GAGCCATTGACCGGAGGATT+GGG 0.403988 3_3:-80636797 None:intergenic
GCAAGGTTGGTGCAAGAAAC+CGG 0.410624 3_3:+80640689 Msa0476730:CDS
TATAGATAGCTATTGATTCA+TGG 0.417433 3_3:-80636567 None:intergenic
TGGTGTCGAGGTTGCGAAGA+AGG 0.418558 3_3:-80636708 None:intergenic
GATCCAACAAAGTAAATGAT+AGG 0.419063 3_3:+80640980 Msa0476730:three_prime_UTR
AGACGAGCTGGAAAACTTCC+TGG 0.420513 3_3:+80640110 Msa0476730:CDS
AGTGATGTTAATCTGTTTGA+TGG 0.421723 3_3:+80639692 Msa0476730:CDS
AGGGCGTTGTTGAGCCAGTT+AGG 0.423606 3_3:-80636688 None:intergenic
TGAGCCAGTTAGGTGCAGTT+TGG 0.424789 3_3:-80636678 None:intergenic
GGAAGCAGTAATGGCTTGTT+GGG 0.426655 3_3:+80637897 Msa0476730:CDS
GTTCCCAATCCTCCGGTCAA+TGG 0.427348 3_3:+80636794 Msa0476730:CDS
AATGGTGGAGTGGGTTGTCT+TGG 0.431285 3_3:-80636606 None:intergenic
TGGAAGCAGTAATGGCTTGT+TGG 0.435199 3_3:+80637896 Msa0476730:CDS
ATCCTGGGCAACTGGTCAAC+CGG 0.438877 3_3:-80637021 None:intergenic
TCAATCAAAGGAAGAGGAAC+TGG 0.439251 3_3:+80640744 Msa0476730:CDS
GAAGTTGGTACTGTTGTTGT+TGG 0.439599 3_3:-80636752 None:intergenic
GCCCAGGATCGACGCTCAGC+TGG 0.442737 3_3:+80637035 Msa0476730:CDS
GAAACACAAAGGTGAAATAA+TGG 0.443665 3_3:+80636939 Msa0476730:CDS
TAATCTGTTTGATGGAGGTT+TGG 0.446200 3_3:+80639700 Msa0476730:CDS
AGAGCCATTGACCGGAGGAT+TGG 0.446472 3_3:-80636798 None:intergenic
GCCAGCTGAGCGTCGATCCT+GGG 0.452139 3_3:-80637036 None:intergenic
GGTACTGTTGTTGTTGGTTG+TGG 0.453246 3_3:-80636746 None:intergenic
GCCACCATGATATAAGGGTT+TGG 0.453992 3_3:-80640953 None:intergenic
ATTAAAGCATGAGTTGAAAC+AGG 0.455099 3_3:+80639808 Msa0476730:CDS
ATAGAAGCTGTTCATACAAC+GGG 0.456842 3_3:-80636966 None:intergenic
CTTCGCTGTGGTTTCGGTGG+AGG 0.457682 3_3:-80636831 None:intergenic
TTGTCCTAACGCAGAGTACT+TGG 0.459203 3_3:-80637079 None:intergenic
GGGGAATAGAGAGAAAGAAA+TGG 0.460424 3_3:-80636540 None:intergenic
AACCGGCGGTGTCGAGGTTG+AGG 0.460908 3_3:-80636774 None:intergenic
CAGCGGAGGGAGTGATGAAC+TGG 0.464161 3_3:+80636908 Msa0476730:CDS
CGCCGGTTGACCAGTTGCCC+AGG 0.465203 3_3:+80637019 Msa0476730:CDS
CAACCTCAGTACTTAAAGAT+TGG 0.466078 3_3:+80640138 Msa0476730:CDS
TTCAACGCATTAGAAGTTGA+AGG 0.469895 3_3:-80640776 None:intergenic
GTTGTTGTTGGTTGTGGCGG+TGG 0.469972 3_3:-80636740 None:intergenic
CTGCTGCCACCATGATATAA+GGG 0.470829 3_3:-80640958 None:intergenic
CCATGCAATGGAAGCAGTAA+TGG 0.471444 3_3:+80637888 Msa0476730:CDS
GTTGCTCCTGTACCTTCCCC+TGG 0.471752 3_3:-80639638 None:intergenic
CTGTTTGATGGAGGTTTGGA+TGG 0.472583 3_3:+80639704 Msa0476730:CDS
CTGTGGTTTCGGTGGAGGAC+AGG 0.484561 3_3:-80636826 None:intergenic
CATGGACTCGGACATGTTGT+TGG 0.486135 3_3:-80637870 None:intergenic
TAAATGGTTAGAAAGGAGAT+TGG 0.488612 3_3:-80636423 None:intergenic
AGAGTTCTTACAGTAGGATA+AGG 0.489180 3_3:-80640182 None:intergenic
CGTCACCGGCGCTGGTATGA+AGG 0.491895 3_3:+80636864 Msa0476730:CDS
GTTGCCAAGTACTCTGCGTT+AGG 0.491986 3_3:+80637075 Msa0476730:CDS
ACTGAGACGAGGAAGCTTGA+AGG 0.495890 3_3:+80641049 Msa0476730:three_prime_UTR
GTTTCACCAGGGGAAGGTAC+AGG 0.498577 3_3:+80639632 Msa0476730:CDS
AGTACTGAGGTTGTGTCACC+AGG 0.501554 3_3:-80640128 None:intergenic
CCATTACTGCTTCCATTGCA+TGG 0.504180 3_3:-80637888 None:intergenic
AGGACGGGAGAGCCATTGAC+CGG 0.509843 3_3:-80636806 None:intergenic
GTTCTGTGAAATGGTGGAGT+GGG 0.511127 3_3:-80636615 None:intergenic
AAGCGGTGAGGCAACAGCGG+AGG 0.511964 3_3:+80636894 Msa0476730:CDS
GCAAATTTAAGATTATGAAA+AGG 0.513629 3_3:-80640838 None:intergenic
GTTTCGGTGGAGGACAGGAC+GGG 0.513862 3_3:-80636821 None:intergenic
CTGCTTCCATTGCATGGACT+CGG 0.514678 3_3:-80637882 None:intergenic
TTGACCGGAGGATTGGGAAC+CGG 0.515320 3_3:-80636791 None:intergenic
TGTTGCCTCACCGCTTTCCT+CGG 0.515416 3_3:-80636887 None:intergenic
GTATCAATAAATGGTTAGAA+AGG 0.520381 3_3:-80636430 None:intergenic
ACTTATTTCTAATTCAAGAT+CGG 0.521991 3_3:-80640873 None:intergenic
TCATTCTCTGTTAGAACAAG+AGG 0.524064 3_3:-80639755 None:intergenic
GGTGTCGAGGTTGCGAAGAA+GGG 0.525959 3_3:-80636707 None:intergenic
GAAAATTGTGGACATAAGAG+AGG 0.527462 3_3:+80640073 Msa0476730:CDS
GGTGTCGAGGTTGAGGAAGT+TGG 0.532035 3_3:-80636767 None:intergenic
ATTGGGAACCGGCGGTGTCG+AGG 0.533014 3_3:-80636780 None:intergenic
AGCTATTGATTCATGGTGAA+GGG 0.536452 3_3:-80636560 None:intergenic
CGTTGAAGAGCAAGCGCAAG+AGG 0.539470 3_3:+80640792 Msa0476730:CDS
CTCGGCCTTCATACCAGCGC+CGG 0.539817 3_3:-80636869 None:intergenic
GGTTTCGGTGGAGGACAGGA+CGG 0.540180 3_3:-80636822 None:intergenic
GGAAGAGGATAAGGCAAGGT+TGG 0.540633 3_3:+80640676 Msa0476730:intron
GTTGTTGTTCTGTGAAATGG+TGG 0.541053 3_3:-80636621 None:intergenic
GAGTGGTGAGGATCGGAGGT+TGG 0.542790 3_3:-80636652 None:intergenic
CCTCAGTACTTAAAGATTGG+TGG 0.548243 3_3:+80640141 Msa0476730:CDS
GAAAGAGTGGTGAGGATCGG+AGG 0.551627 3_3:-80636656 None:intergenic
ATCGACGACGTCACCGGCGC+TGG 0.555704 3_3:+80636856 Msa0476730:CDS
GGTTAGAAAGGAGATTGGAC+AGG 0.556984 3_3:-80636418 None:intergenic
GAATTAGAAATAAGTAATGC+AGG 0.558191 3_3:+80640881 Msa0476730:CDS
AGAACCAAACCCTTATATCA+TGG 0.559837 3_3:+80640949 Msa0476730:three_prime_UTR
AGCGGTGAGGCAACAGCGGA+GGG 0.559972 3_3:+80636895 Msa0476730:CDS
CGGCGCTGGTATGAAGGCCG+AGG 0.563738 3_3:+80636870 Msa0476730:CDS
AGAGAATGAGAGGTCCCTCA+TGG 0.567340 3_3:+80639769 Msa0476730:CDS
ATAACTGGTTTATCAATCAA+AGG 0.567448 3_3:+80640732 Msa0476730:CDS
TAGCTATTGATTCATGGTGA+AGG 0.567933 3_3:-80636561 None:intergenic
TGTTCTGTGAAATGGTGGAG+TGG 0.567991 3_3:-80636616 None:intergenic
CAAGGTTGGTGCAAGAAACC+GGG 0.570646 3_3:+80640690 Msa0476730:CDS
ACCGCCGGTTCCCAATCCTC+CGG 0.570735 3_3:+80636787 Msa0476730:CDS
CAGCTGCAGCTGCAGCACCT+AGG 0.571350 3_3:+80641076 Msa0476730:three_prime_UTR
GAAGTCATCGACGACGTCAC+CGG 0.571705 3_3:+80636850 Msa0476730:CDS
TTCCTCAACCTCGACACCGC+CGG 0.572536 3_3:+80636772 Msa0476730:CDS
TGACTTCGCTGTGGTTTCGG+TGG 0.576108 3_3:-80636834 None:intergenic
GGTTTATCAATCAAAGGAAG+AGG 0.579093 3_3:+80640738 Msa0476730:CDS
TTGGAAAGAGTGGTGAGGAT+CGG 0.583594 3_3:-80636659 None:intergenic
GATGGTTCAGATAATAGCAT+GGG 0.585141 3_3:+80639722 Msa0476730:CDS
GGACAGGAAATGGAAAGAAG+AGG 0.586326 3_3:-80636402 None:intergenic
CCACCAATCTTTAAGTACTG+AGG 0.588799 3_3:-80640141 None:intergenic
AAAGGTAAAATACCATGAAG+TGG 0.598924 3_3:-80637140 None:intergenic
TAGGTGCAGTTTGGAAAGAG+TGG 0.600373 3_3:-80636669 None:intergenic
TGGCGTTGACGTTGGTGTCG+AGG 0.601937 3_3:-80636720 None:intergenic
GGATGGTTCAGATAATAGCA+TGG 0.605053 3_3:+80639721 Msa0476730:CDS
GGGTTATAAAGAGAAAATTG+TGG 0.610746 3_3:+80640061 Msa0476730:intron
TTGTTCTAACAGAGAATGAG+AGG 0.611125 3_3:+80639759 Msa0476730:CDS
TGTGGCGGTGGCGTTGACGT+TGG 0.611369 3_3:-80636728 None:intergenic
GCTATTGATTCATGGTGAAG+GGG 0.615964 3_3:-80636559 None:intergenic
GGTTCAGATAATAGCATGGG+AGG 0.618498 3_3:+80639725 Msa0476730:CDS
GATGTTAATCTGTTTGATGG+AGG 0.621633 3_3:+80639695 Msa0476730:CDS
TGTGTAACAGGAGTTTCACC+AGG 0.621894 3_3:+80639620 Msa0476730:intron
GATCTGTTTCAATTGCAACC+CGG 0.623157 3_3:-80640708 None:intergenic
ACCGGAGGATTGGGAACCGG+CGG 0.625286 3_3:-80636788 None:intergenic
GGAAAGCGGTGAGGCAACAG+CGG 0.626255 3_3:+80636891 Msa0476730:CDS
GGGCAACTGGTCAACCGGCG+TGG 0.628223 3_3:-80637016 None:intergenic
ATGTCTTACACGTTCCATGA+GGG 0.635061 3_3:-80639783 None:intergenic
ACAGGAGTTTCACCAGGGGA+AGG 0.636992 3_3:+80639626 Msa0476730:intron
ACATGTCCGAGTCCATGCAA+TGG 0.642083 3_3:+80637876 Msa0476730:CDS
ACTGTTGTTGTTGGTTGTGG+CGG 0.642777 3_3:-80636743 None:intergenic
CATGTCTTACACGTTCCATG+AGG 0.645094 3_3:-80639784 None:intergenic
GATAGAAGCTGTTCATACAA+CGG 0.647941 3_3:-80636967 None:intergenic
TACTCTGCGTTAGGACAACA+GGG 0.650241 3_3:+80637084 Msa0476730:CDS
ATTCTCAATCTCAAACACAC+TGG 0.650337 3_3:-80641289 None:intergenic
GGTATGAAGGCCGAGGAAAG+CGG 0.652275 3_3:+80636877 Msa0476730:CDS
ACGGGAGAGCCATTGACCGG+AGG 0.652694 3_3:-80636803 None:intergenic
GTGTTTGAGAATCGCCACGC+CGG 0.654940 3_3:+80637002 Msa0476730:CDS
TTCAGGAAGAGGATAAGGCA+AGG 0.655439 3_3:+80640672 Msa0476730:intron
AGTTGCTACTAGCTAGTGTG+TGG 0.669965 3_3:-80636487 None:intergenic
AATGCAGGTGATAAAAGTGA+CGG 0.675503 3_3:+80640896 Msa0476730:CDS
GGTGGCAATCACATTCAAAG+TGG 0.680210 3_3:+80640159 Msa0476730:CDS
TGGCAGAAAGCGAAACACAA+AGG 0.682726 3_3:+80636928 Msa0476730:CDS
GCAGTTTGGAAAGAGTGGTG+AGG 0.695329 3_3:-80636664 None:intergenic
CGTCGTCGATGACTTCGCTG+TGG 0.697602 3_3:-80636843 None:intergenic
GTGTAACAGGAGTTTCACCA+GGG 0.706920 3_3:+80639621 Msa0476730:intron
ACCAAACCCTTATATCATGG+TGG 0.707203 3_3:+80640952 Msa0476730:three_prime_UTR
GAAGGCCGAGGAAAGCGGTG+AGG 0.708487 3_3:+80636882 Msa0476730:CDS
ACAGAGTTAAAACTGAGACG+AGG 0.728174 3_3:+80641038 Msa0476730:three_prime_UTR
TGTAACAGGAGTTTCACCAG+GGG 0.775474 3_3:+80639622 Msa0476730:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATAAAAATAAAAT+TGG + chr3_3:80641220-80641239 Msa0476730:three_prime_UTR 0.0%
!!! ATTACAATATTTTTTTTGTA+TGG + chr3_3:80637570-80637589 Msa0476730:intron 10.0%
!!! AATTTTTTGCAATAATATTT+TGG + chr3_3:80637626-80637645 Msa0476730:intron 10.0%
!! TAAAAATAATAATGATTAGT+GGG - chr3_3:80640625-80640644 None:intergenic 10.0%
!! TTTGTAAATATTATTGAGAA+AGG - chr3_3:80637161-80637180 None:intergenic 15.0%
!!! ATTTTTTTATTTTTTTGTCG+TGG + chr3_3:80637705-80637724 Msa0476730:intron 15.0%
!!! AAGTTTTTATAGGAAAAAAT+AGG + chr3_3:80638086-80638105 Msa0476730:intron 15.0%
!!! ATTTATACTTTTCTCAATAT+AGG + chr3_3:80638180-80638199 Msa0476730:intron 15.0%
!! AATGATAATTAAGATCTTAA+TGG + chr3_3:80638279-80638298 Msa0476730:intron 15.0%
!! CTAATAAATTATTCATTATG+TGG - chr3_3:80639063-80639082 None:intergenic 15.0%
!! AATAAGATATTAAATGACTA+AGG + chr3_3:80639233-80639252 Msa0476730:intron 15.0%
!! CTAAAAATAATAATGATTAG+TGG - chr3_3:80640626-80640645 None:intergenic 15.0%
!! AATAAAAATAAAATTGGTAG+AGG + chr3_3:80641226-80641245 Msa0476730:three_prime_UTR 15.0%
!!! CTTTCAATTACTATTTTTTT+TGG - chr3_3:80641387-80641406 None:intergenic 15.0%
!!! TTATATGGAGTATCAATAAA+TGG - chr3_3:80636442-80636461 None:intergenic 20.0%
!! ATCAATAGCTATCTATATTA+TGG + chr3_3:80636573-80636592 Msa0476730:exon 20.0%
!! AAAATAATTAAGGTAGCTAA+TGG + chr3_3:80637398-80637417 Msa0476730:intron 20.0%
!! TATGTTAAAATAAGCTCAAA+AGG - chr3_3:80637465-80637484 None:intergenic 20.0%
!!! ACAATATTTTTTTTGTATGG+TGG + chr3_3:80637573-80637592 Msa0476730:intron 20.0%
!!! TTTTTGCAATAATATTTTGG+CGG + chr3_3:80637629-80637648 Msa0476730:intron 20.0%
!!! AGAATTTATTTTCTGTTGTA+TGG + chr3_3:80637771-80637790 Msa0476730:intron 20.0%
!! TTCTCAATATAGGAATTATA+CGG + chr3_3:80638190-80638209 Msa0476730:intron 20.0%
!!! TAAGCAAAAAACTACATTTT+AGG + chr3_3:80638378-80638397 Msa0476730:intron 20.0%
!! GGTGTATATATGAATTATTT+GGG + chr3_3:80638502-80638521 Msa0476730:intron 20.0%
!!! ATATATGAATTATTTGGGTT+AGG + chr3_3:80638507-80638526 Msa0476730:intron 20.0%
!!! TATATGAATTATTTGGGTTA+GGG + chr3_3:80638508-80638527 Msa0476730:intron 20.0%
!! TAAATTATTCATGACGTATT+TGG - chr3_3:80638587-80638606 None:intergenic 20.0%
!!! CATATTGATTAATATCCAAT+TGG - chr3_3:80638856-80638875 None:intergenic 20.0%
!! TAAATAATTAAGGGTAATGT+TGG - chr3_3:80639191-80639210 None:intergenic 20.0%
!! TTACCCTTAATTATTTATTG+TGG + chr3_3:80639194-80639213 Msa0476730:intron 20.0%
!! TCTCCACAATAAATAATTAA+GGG - chr3_3:80639200-80639219 None:intergenic 20.0%
!! TTAAAAAGTGACACTTAAAA+AGG + chr3_3:80639330-80639349 Msa0476730:intron 20.0%
!! AAATAACATGCTAAAAAGTA+AGG - chr3_3:80639462-80639481 None:intergenic 20.0%
!! TATCTATTATTCAAAGTACA+TGG - chr3_3:80639495-80639514 None:intergenic 20.0%
!! AATTAGTACTCATATCTAAT+GGG - chr3_3:80639579-80639598 None:intergenic 20.0%
!! TAATTAGTACTCATATCTAA+TGG - chr3_3:80639580-80639599 None:intergenic 20.0%
!! GATTACATTAAATGTTGAAT+AGG + chr3_3:80639844-80639863 Msa0476730:intron 20.0%
!!! GCAAATTTAAGATTATGAAA+AGG - chr3_3:80640841-80640860 None:intergenic 20.0%
!!! ACTTATTTCTAATTCAAGAT+CGG - chr3_3:80640876-80640895 None:intergenic 20.0%
!! ACGTTAATGTGTTAAATATT+GGG - chr3_3:80641183-80641202 None:intergenic 20.0%
!!! TTGAGATTGAGAATTTTATA+AGG + chr3_3:80641298-80641317 Msa0476730:three_prime_UTR 20.0%
! GTATCAATAAATGGTTAGAA+AGG - chr3_3:80636433-80636452 None:intergenic 25.0%
!!! TATAGATAGCTATTGATTCA+TGG - chr3_3:80636570-80636589 None:intergenic 25.0%
!! ACTGAAAATAAGTCTAAAGT+AGG + chr3_3:80637355-80637374 Msa0476730:intron 25.0%
!! TATTTTCTGTTGTATGGTTA+CGG + chr3_3:80637777-80637796 Msa0476730:intron 25.0%
! AGGAATAAGCAACAAAAATT+TGG - chr3_3:80638046-80638065 None:intergenic 25.0%
! CATTCGTGTAATTTATCTTT+AGG - chr3_3:80638066-80638085 None:intergenic 25.0%
!! TACACGAATGAAGTTTTTAT+AGG + chr3_3:80638076-80638095 Msa0476730:intron 25.0%
! TCTCAATATAGGAATTATAC+GGG + chr3_3:80638191-80638210 Msa0476730:intron 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG - chr3_3:80638368-80638387 None:intergenic 25.0%
! CATTCATTTAATGATGTATG+TGG + chr3_3:80638403-80638422 Msa0476730:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr3_3:80638477-80638496 Msa0476730:intron 25.0%
! GGGTGTATATATGAATTATT+TGG + chr3_3:80638501-80638520 Msa0476730:intron 25.0%
! ACAATTCTGTCAAAAAAACA+AGG - chr3_3:80638734-80638753 None:intergenic 25.0%
! AAAGTCCAAACAATTCATAT+GGG - chr3_3:80638980-80638999 None:intergenic 25.0%
! ATATGAATTGTTTGGACTTT+GGG + chr3_3:80638980-80638999 Msa0476730:intron 25.0%
! TTTGAAAGTGACAGTTAAAT+GGG - chr3_3:80639140-80639159 None:intergenic 25.0%
! CTCTCCACAATAAATAATTA+AGG - chr3_3:80639201-80639220 None:intergenic 25.0%
! AACATCATAGTTATACTGTA+TGG + chr3_3:80639402-80639421 Msa0476730:intron 25.0%
! AATTCTGTCAAAAAAAAGCA+AGG - chr3_3:80639437-80639456 None:intergenic 25.0%
! AACATTTAATGTAATCCATG+AGG - chr3_3:80639840-80639859 None:intergenic 25.0%
! CATTAAATGTTGAATAGGAA+AGG + chr3_3:80639849-80639868 Msa0476730:intron 25.0%
!!! GTATGTTTTGAATCTGAAAA+AGG - chr3_3:80640239-80640258 None:intergenic 25.0%
! TTTCAGATTCAAAACATACT+TGG + chr3_3:80640240-80640259 Msa0476730:intron 25.0%
! AAGCTATCTTAGATATCTTA+CGG + chr3_3:80640470-80640489 Msa0476730:intron 25.0%
!! AACATTTTATAGATCCAATC+AGG + chr3_3:80640508-80640527 Msa0476730:intron 25.0%
! TAAATATTTGAGAACCTGAT+TGG - chr3_3:80640525-80640544 None:intergenic 25.0%
!!! AACATGTGAACTATTTTGAA+TGG - chr3_3:80640572-80640591 None:intergenic 25.0%
! AATTGAAACAGATCAATAAC+TGG + chr3_3:80640717-80640736 Msa0476730:CDS 25.0%
!! ATAACTGGTTTATCAATCAA+AGG + chr3_3:80640732-80640751 Msa0476730:CDS 25.0%
! GAATTAGAAATAAGTAATGC+AGG + chr3_3:80640881-80640900 Msa0476730:CDS 25.0%
! GACGTTAATGTGTTAAATAT+TGG - chr3_3:80641184-80641203 None:intergenic 25.0%
TAAATGGTTAGAAAGGAGAT+TGG - chr3_3:80636426-80636445 None:intergenic 30.0%
GAAGTGATGAACAACTTATA+TGG - chr3_3:80636457-80636476 None:intergenic 30.0%
AAGAAATGGAGAAAAAAGGA+GGG - chr3_3:80636529-80636548 None:intergenic 30.0%
AAAGAAATGGAGAAAAAAGG+AGG - chr3_3:80636530-80636549 None:intergenic 30.0%
GAGAAAGAAATGGAGAAAAA+AGG - chr3_3:80636533-80636552 None:intergenic 30.0%
GAAACACAAAGGTGAAATAA+TGG + chr3_3:80636939-80636958 Msa0476730:CDS 30.0%
AAAGGTAAAATACCATGAAG+TGG - chr3_3:80637143-80637162 None:intergenic 30.0%
! TGTCAATTAATGGATGGAAA+TGG + chr3_3:80637226-80637245 Msa0476730:intron 30.0%
! TTAATGGATGGAAATGGATT+TGG + chr3_3:80637232-80637251 Msa0476730:intron 30.0%
GTCATTCATGCATAGTAATA+GGG - chr3_3:80637337-80637356 None:intergenic 30.0%
AGTCATTCATGCATAGTAAT+AGG - chr3_3:80637338-80637357 None:intergenic 30.0%
!!! CCTTTTGAGCTTATTTTAAC+CGG + chr3_3:80637462-80637481 Msa0476730:intron 30.0%
AAAACATAATTACCCTCCAT+TGG - chr3_3:80637685-80637704 None:intergenic 30.0%
AAATTTGTGTCTACAGTAAC+TGG - chr3_3:80637740-80637759 None:intergenic 30.0%
! GTTACTGTAGACACAAATTT+TGG + chr3_3:80637740-80637759 Msa0476730:intron 30.0%
CTCAATATAGGAATTATACG+GGG + chr3_3:80638192-80638211 Msa0476730:intron 30.0%
!! TTAATGGTTGATAGTCAAAG+AGG + chr3_3:80638295-80638314 Msa0476730:intron 30.0%
CATTCATTTAATGATGCACA+TGG - chr3_3:80638442-80638461 None:intergenic 30.0%
TAATTCATATATACACCCTC+CGG - chr3_3:80638499-80638518 None:intergenic 30.0%
ATTCATGACGTATTTGGTAT+AGG - chr3_3:80638581-80638600 None:intergenic 30.0%
GCTGTTATAGTTATACTGTA+TGG + chr3_3:80638699-80638718 Msa0476730:intron 30.0%
TCAAAAAAACAAGGACAACT+GGG - chr3_3:80638725-80638744 None:intergenic 30.0%
! TTTCTTGGTGGATAATAGTT+TGG - chr3_3:80638781-80638800 None:intergenic 30.0%
ACAAGTTAGCTAATCTTTCT+TGG - chr3_3:80638796-80638815 None:intergenic 30.0%
!!! CATACATCACTTTTTCCAAT+TGG + chr3_3:80638838-80638857 Msa0476730:intron 30.0%
AGTAATAATCAAGCCCTTAA+TGG + chr3_3:80638902-80638921 Msa0476730:intron 30.0%
CTTTGACTATCAACCATTAA+GGG - chr3_3:80638295-80638314 None:intergenic 30.0%
CAAAGTCCAAACAATTCATA+TGG - chr3_3:80638981-80639000 None:intergenic 30.0%
CATATGAATTGTTTGGACTT+TGG + chr3_3:80638979-80638998 Msa0476730:intron 30.0%
AAGTGACACTTAAAAAGGAA+CGG - chr3_3:80639335-80639354 None:intergenic 30.0%
!!! TCCTTTTTAAGTGTCACTTT+TGG + chr3_3:80639100-80639119 Msa0476730:intron 30.0%
TCCAAAAGTGACACTTAAAA+AGG - chr3_3:80639104-80639123 None:intergenic 30.0%
! CTTTGAAAGTGACAGTTAAA+TGG - chr3_3:80639141-80639160 None:intergenic 30.0%
GTAACATTTATTGAGTGTCT+TGG + chr3_3:80639294-80639313 Msa0476730:intron 30.0%
AAGTGACACTTAAAAAGGAA+CGG + chr3_3:80639335-80639354 Msa0476730:intron 30.0%
AAAAAAAAGCAAGGACAACT+GGG - chr3_3:80639428-80639447 None:intergenic 30.0%
ATTCAAAGTACATGGTAGTT+TGG - chr3_3:80639487-80639506 None:intergenic 30.0%
AGTGATGTTAATCTGTTTGA+TGG + chr3_3:80639692-80639711 Msa0476730:CDS 30.0%
! ATTAAAGCATGAGTTGAAAC+AGG + chr3_3:80639808-80639827 Msa0476730:CDS 30.0%
TGTGTTGAAACTTGAAATGA+TGG - chr3_3:80639916-80639935 None:intergenic 30.0%
GGGTTATAAAGAGAAAATTG+TGG + chr3_3:80640061-80640080 Msa0476730:intron 30.0%
CAATATAGAGTTCTTACAGT+AGG - chr3_3:80640191-80640210 None:intergenic 30.0%
GATCCAACAAAGTAAATGAT+AGG + chr3_3:80640980-80640999 Msa0476730:three_prime_UTR 30.0%
TCACCTATCATTTACTTTGT+TGG - chr3_3:80640986-80641005 None:intergenic 30.0%
! TAAACTTTTTGTTGCATCCT+AGG - chr3_3:80641096-80641115 None:intergenic 30.0%
!! AGCTATTGATTCATGGTGAA+GGG - chr3_3:80636563-80636582 None:intergenic 35.0%
!! TAGCTATTGATTCATGGTGA+AGG - chr3_3:80636564-80636583 None:intergenic 35.0%
! GTTGTTGTTGTTCTGTGAAA+TGG - chr3_3:80636627-80636646 None:intergenic 35.0%
ATAGAAGCTGTTCATACAAC+GGG - chr3_3:80636969-80636988 None:intergenic 35.0%
GATAGAAGCTGTTCATACAA+CGG - chr3_3:80636970-80636989 None:intergenic 35.0%
AAGCTTTGCGTGTCAATTAA+TGG + chr3_3:80637216-80637235 Msa0476730:intron 35.0%
TTTGCGTGTCAATTAATGGA+TGG + chr3_3:80637220-80637239 Msa0476730:intron 35.0%
! TGGAAAATTTTCTCTCTCTC+TGG + chr3_3:80637252-80637271 Msa0476730:intron 35.0%
TCATGCATAGTAATAGGGAA+AGG - chr3_3:80637332-80637351 None:intergenic 35.0%
CATGTTAAGATAGGCTCAAA+AGG - chr3_3:80637435-80637454 None:intergenic 35.0%
GGTCAAGTTCATGTTAAGAT+AGG - chr3_3:80637444-80637463 None:intergenic 35.0%
CCGGTTAAAATAAGCTCAAA+AGG - chr3_3:80637495-80637514 None:intergenic 35.0%
TTTAACCGGCATGTTTATGT+AGG + chr3_3:80637506-80637525 Msa0476730:intron 35.0%
TTAACCGGCATGTTTATGTA+GGG + chr3_3:80637507-80637526 Msa0476730:intron 35.0%
GATACATAAATCCTTGCCAA+TGG + chr3_3:80637666-80637685 Msa0476730:intron 35.0%
TGTACCTGTTAGACTTTGTA+AGG - chr3_3:80637935-80637954 None:intergenic 35.0%
! GTATGTTTTCGGTTCAGTAT+AGG + chr3_3:80638131-80638150 Msa0476730:intron 35.0%
GTCAAAAAAACAAGGACAAC+TGG - chr3_3:80638726-80638745 None:intergenic 35.0%
ATAATAACATGCTACGAGCA+AGG - chr3_3:80638757-80638776 None:intergenic 35.0%
AGTTAGCTAATCTTTCTTGG+TGG - chr3_3:80638793-80638812 None:intergenic 35.0%
CCTTTGACTATCAACCATTA+AGG - chr3_3:80638919-80638938 None:intergenic 35.0%
!! CCTTAATGGTTGATAGTCAA+AGG + chr3_3:80638916-80638935 Msa0476730:intron 35.0%
!! TAATGGTTGATAGTCAAAGG+AGG + chr3_3:80638919-80638938 Msa0476730:intron 35.0%
CAAACAATTCATATGGGACA+AGG - chr3_3:80638974-80638993 None:intergenic 35.0%
CTTGTCCCATATGAATTGTT+TGG + chr3_3:80638972-80638991 Msa0476730:intron 35.0%
! AATTGTTTGGACTTTGGGTT+AGG + chr3_3:80638985-80639004 Msa0476730:intron 35.0%
! ATTGTTTGGACTTTGGGTTA+GGG + chr3_3:80638986-80639005 Msa0476730:intron 35.0%
CAAAAAAAAGCAAGGACAAC+TGG - chr3_3:80639429-80639448 None:intergenic 35.0%
TTTATCTCCACATGTGTAAC+AGG + chr3_3:80639608-80639627 Msa0476730:intron 35.0%
GATGTTAATCTGTTTGATGG+AGG + chr3_3:80639695-80639714 Msa0476730:CDS 35.0%
TAATCTGTTTGATGGAGGTT+TGG + chr3_3:80639700-80639719 Msa0476730:CDS 35.0%
GATGGTTCAGATAATAGCAT+GGG + chr3_3:80639722-80639741 Msa0476730:CDS 35.0%
TCATTCTCTGTTAGAACAAG+AGG - chr3_3:80639758-80639777 None:intergenic 35.0%
TTGTTCTAACAGAGAATGAG+AGG + chr3_3:80639759-80639778 Msa0476730:CDS 35.0%
CCATTCTCTAATACACGTTT+CGG - chr3_3:80640023-80640042 None:intergenic 35.0%
CGAAACGTGTATTAGAGAAT+GGG + chr3_3:80640021-80640040 Msa0476730:intron 35.0%
!!! TGGGTTGCTCTTATTTTTGT+AGG + chr3_3:80640040-80640059 Msa0476730:intron 35.0%
!!! GGGTTGCTCTTATTTTTGTA+GGG + chr3_3:80640041-80640060 Msa0476730:intron 35.0%
GAAAATTGTGGACATAAGAG+AGG + chr3_3:80640073-80640092 Msa0476730:CDS 35.0%
CAACCTCAGTACTTAAAGAT+TGG + chr3_3:80640138-80640157 Msa0476730:CDS 35.0%
AGAGTTCTTACAGTAGGATA+AGG - chr3_3:80640185-80640204 None:intergenic 35.0%
GGTTTATCAATCAAAGGAAG+AGG + chr3_3:80640738-80640757 Msa0476730:CDS 35.0%
TTCAACGCATTAGAAGTTGA+AGG - chr3_3:80640779-80640798 None:intergenic 35.0%
AATGCAGGTGATAAAAGTGA+CGG + chr3_3:80640896-80640915 Msa0476730:CDS 35.0%
ACGGTCGTTACATGTAAAAA+TGG + chr3_3:80640915-80640934 Msa0476730:exon 35.0%
AGAACCAAACCCTTATATCA+TGG + chr3_3:80640949-80640968 Msa0476730:three_prime_UTR 35.0%
ATTCTCAATCTCAAACACAC+TGG - chr3_3:80641292-80641311 None:intergenic 35.0%
AAAGGAGATTGGACAGGAAA+TGG - chr3_3:80636415-80636434 None:intergenic 40.0%
AGAAAAAAGGAGGGAAGAGA+GGG - chr3_3:80636520-80636539 None:intergenic 40.0%
GGGGAATAGAGAGAAAGAAA+TGG - chr3_3:80636543-80636562 None:intergenic 40.0%
!! GCTATTGATTCATGGTGAAG+GGG - chr3_3:80636562-80636581 None:intergenic 40.0%
! GTTGTTGTTCTGTGAAATGG+TGG - chr3_3:80636624-80636643 None:intergenic 40.0%
!! GAAGTTGGTACTGTTGTTGT+TGG - chr3_3:80636755-80636774 None:intergenic 40.0%
TAAACAACTCGACCACTTCA+TGG + chr3_3:80637128-80637147 Msa0476730:CDS 40.0%
AAAGAAGAAGCAACCAGAGT+AGG - chr3_3:80637298-80637317 None:intergenic 40.0%
AACTCCCTACATAAACATGC+CGG - chr3_3:80637514-80637533 None:intergenic 40.0%
TTTATGTATCGAAGCTCGCA+TGG - chr3_3:80637656-80637675 None:intergenic 40.0%
ACATAAATCCTTGCCAATGG+AGG + chr3_3:80637669-80637688 Msa0476730:intron 40.0%
CATAAATCCTTGCCAATGGA+GGG + chr3_3:80637670-80637689 Msa0476730:intron 40.0%
ATAATTACCCTCCATTGGCA+AGG - chr3_3:80637680-80637699 None:intergenic 40.0%
CAGTCCTTACAAAGTCTAAC+AGG + chr3_3:80637928-80637947 Msa0476730:CDS 40.0%
ACTGAACCGAAAACATACTG+CGG - chr3_3:80638129-80638148 None:intergenic 40.0%
TATCCCAATATGAGACCCTA+TGG - chr3_3:80638157-80638176 None:intergenic 40.0%
TCAAAGAGGAACATGACTAC+AGG + chr3_3:80638309-80638328 Msa0476730:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG - chr3_3:80638364-80638383 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG - chr3_3:80638365-80638384 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr3_3:80638480-80638499 Msa0476730:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr3_3:80638481-80638500 Msa0476730:intron 40.0%
TGATAGTCAAAGGAGGAACA+TGG + chr3_3:80638926-80638945 Msa0476730:intron 40.0%
CAATTCATATGGGACAAGGA+AGG - chr3_3:80638970-80638989 None:intergenic 40.0%
GACACTTAAAAAGGAACGGA+GGG - chr3_3:80639339-80639358 None:intergenic 40.0%
TGACACTTAAAAAGGAACGG+AGG - chr3_3:80639338-80639357 None:intergenic 40.0%
TGACACTTAAAAAGGAACGG+AGG + chr3_3:80639338-80639357 Msa0476730:intron 40.0%
TGAAACTCCTGTTACACATG+TGG - chr3_3:80639618-80639637 None:intergenic 40.0%
GGATGGTTCAGATAATAGCA+TGG + chr3_3:80639721-80639740 Msa0476730:CDS 40.0%
GATAATAGCATGGGAGGATT+TGG + chr3_3:80639731-80639750 Msa0476730:CDS 40.0%
ATGTCTTACACGTTCCATGA+GGG - chr3_3:80639786-80639805 None:intergenic 40.0%
! AGCATGAGTTGAAACAGGTA+CGG + chr3_3:80639813-80639832 Msa0476730:intron 40.0%
CCGAAACGTGTATTAGAGAA+TGG + chr3_3:80640020-80640039 Msa0476730:intron 40.0%
! CCACCAATCTTTAAGTACTG+AGG - chr3_3:80640144-80640163 None:intergenic 40.0%
CCTCAGTACTTAAAGATTGG+TGG + chr3_3:80640141-80640160 Msa0476730:CDS 40.0%
GCTTGATCATAGACAAGCAA+GGG - chr3_3:80640339-80640358 None:intergenic 40.0%
TGCTTGATCATAGACAAGCA+AGG - chr3_3:80640340-80640359 None:intergenic 40.0%
GATATGTGTTTGTGCCTTTC+AGG + chr3_3:80640655-80640674 Msa0476730:intron 40.0%
GATCTGTTTCAATTGCAACC+CGG - chr3_3:80640711-80640730 None:intergenic 40.0%
TCAATCAAAGGAAGAGGAAC+TGG + chr3_3:80640744-80640763 Msa0476730:CDS 40.0%
ACCAAACCCTTATATCATGG+TGG + chr3_3:80640952-80640971 Msa0476730:three_prime_UTR 40.0%
ACAGAGTTAAAACTGAGACG+AGG + chr3_3:80641038-80641057 Msa0476730:three_prime_UTR 40.0%
GGACAGGAAATGGAAAGAAG+AGG - chr3_3:80636405-80636424 None:intergenic 45.0%
GGTTAGAAAGGAGATTGGAC+AGG - chr3_3:80636421-80636440 None:intergenic 45.0%
AGTTGCTACTAGCTAGTGTG+TGG - chr3_3:80636490-80636509 None:intergenic 45.0%
GAGAAAAAAGGAGGGAAGAG+AGG - chr3_3:80636521-80636540 None:intergenic 45.0%
! GTTCTGTGAAATGGTGGAGT+GGG - chr3_3:80636618-80636637 None:intergenic 45.0%
! TGTTCTGTGAAATGGTGGAG+TGG - chr3_3:80636619-80636638 None:intergenic 45.0%
TTGGAAAGAGTGGTGAGGAT+CGG - chr3_3:80636662-80636681 None:intergenic 45.0%
TAGGTGCAGTTTGGAAAGAG+TGG - chr3_3:80636672-80636691 None:intergenic 45.0%
CTTTCCAAACTGCACCTAAC+TGG + chr3_3:80636674-80636693 Msa0476730:CDS 45.0%
! ACTGTTGTTGTTGGTTGTGG+CGG - chr3_3:80636746-80636765 None:intergenic 45.0%
! GGTACTGTTGTTGTTGGTTG+TGG - chr3_3:80636749-80636768 None:intergenic 45.0%
TGGCAGAAAGCGAAACACAA+AGG + chr3_3:80636928-80636947 Msa0476730:CDS 45.0%
! TTGTCCTAACGCAGAGTACT+TGG - chr3_3:80637082-80637101 None:intergenic 45.0%
TACTCTGCGTTAGGACAACA+GGG + chr3_3:80637084-80637103 Msa0476730:CDS 45.0%
! TTTTCTCTCTCTCTGGACTC+TGG + chr3_3:80637259-80637278 Msa0476730:intron 45.0%
TTTCTCTCTCTCTGGACTCT+GGG + chr3_3:80637260-80637279 Msa0476730:intron 45.0%
!! GTGGTATTGACATCCTACTC+TGG + chr3_3:80637282-80637301 Msa0476730:intron 45.0%
CCATTACTGCTTCCATTGCA+TGG - chr3_3:80637891-80637910 None:intergenic 45.0%
CCATGCAATGGAAGCAGTAA+TGG + chr3_3:80637888-80637907 Msa0476730:CDS 45.0%
! TGGAAGCAGTAATGGCTTGT+TGG + chr3_3:80637896-80637915 Msa0476730:CDS 45.0%
!! GGAAGCAGTAATGGCTTGTT+GGG + chr3_3:80637897-80637916 Msa0476730:CDS 45.0%
TTCGGTTCAGTATAGGCCAT+AGG + chr3_3:80638138-80638157 Msa0476730:intron 45.0%
TCGGTTCAGTATAGGCCATA+GGG + chr3_3:80638139-80638158 Msa0476730:intron 45.0%
TAGGCCATAGGGTCTCATAT+TGG + chr3_3:80638150-80638169 Msa0476730:intron 45.0%
AGGCCATAGGGTCTCATATT+GGG + chr3_3:80638151-80638170 Msa0476730:intron 45.0%
AAGGAACGGAGGTAGTAGAA+TGG + chr3_3:80639349-80639368 Msa0476730:intron 45.0%
TGTGTAACAGGAGTTTCACC+AGG + chr3_3:80639620-80639639 Msa0476730:intron 45.0%
GTGTAACAGGAGTTTCACCA+GGG + chr3_3:80639621-80639640 Msa0476730:intron 45.0%
TGTAACAGGAGTTTCACCAG+GGG + chr3_3:80639622-80639641 Msa0476730:intron 45.0%
CTGTTTGATGGAGGTTTGGA+TGG + chr3_3:80639704-80639723 Msa0476730:CDS 45.0%
GGTTCAGATAATAGCATGGG+AGG + chr3_3:80639725-80639744 Msa0476730:CDS 45.0%
CATGTCTTACACGTTCCATG+AGG - chr3_3:80639787-80639806 None:intergenic 45.0%
! ATTTTACGCAAGAGACGAGC+TGG + chr3_3:80640098-80640117 Msa0476730:CDS 45.0%
GGTGGCAATCACATTCAAAG+TGG + chr3_3:80640159-80640178 Msa0476730:CDS 45.0%
TGTTTGTGCCTTTCAGGAAG+AGG + chr3_3:80640661-80640680 Msa0476730:intron 45.0%
TGCCTTTCAGGAAGAGGATA+AGG + chr3_3:80640667-80640686 Msa0476730:intron 45.0%
TGCCTTATCCTCTTCCTGAA+AGG - chr3_3:80640672-80640691 None:intergenic 45.0%
TTCAGGAAGAGGATAAGGCA+AGG + chr3_3:80640672-80640691 Msa0476730:intron 45.0%
GCCACCATGATATAAGGGTT+TGG - chr3_3:80640956-80640975 None:intergenic 45.0%
CTGCTGCCACCATGATATAA+GGG - chr3_3:80640961-80640980 None:intergenic 45.0%
TCTGCTGCCACCATGATATA+AGG - chr3_3:80640962-80640981 None:intergenic 45.0%
!! CTTATTAATTAAAATAATTA+AGG + chr3_3:80637388-80637407 Msa0476730:intron 5.0%
!! AATAATTTATAATGATATAA+TGG + chr3_3:80638598-80638617 Msa0476730:intron 5.0%
!!! TTTATTTTTATTTTTTTGAA+AGG - chr3_3:80641212-80641231 None:intergenic 5.0%
!! AATGGTGGAGTGGGTTGTCT+TGG - chr3_3:80636609-80636628 None:intergenic 50.0%
GCAGTTTGGAAAGAGTGGTG+AGG - chr3_3:80636667-80636686 None:intergenic 50.0%
TGAGCCAGTTAGGTGCAGTT+TGG - chr3_3:80636681-80636700 None:intergenic 50.0%
CGATGACTTCGCTGTGGTTT+CGG - chr3_3:80636840-80636859 None:intergenic 50.0%
GTTGCCAAGTACTCTGCGTT+AGG + chr3_3:80637075-80637094 Msa0476730:CDS 50.0%
GTACTCTGCGTTAGGACAAC+AGG + chr3_3:80637083-80637102 Msa0476730:CDS 50.0%
CATGGACTCGGACATGTTGT+TGG - chr3_3:80637873-80637892 None:intergenic 50.0%
ACATGTCCGAGTCCATGCAA+TGG + chr3_3:80637876-80637895 Msa0476730:CDS 50.0%
CTGCTTCCATTGCATGGACT+CGG - chr3_3:80637885-80637904 None:intergenic 50.0%
! CTGCTGCCGCAGTATGTTTT+CGG + chr3_3:80638120-80638139 Msa0476730:intron 50.0%
CAAAGGAGGAACATGGCTAC+AGG + chr3_3:80638933-80638952 Msa0476730:intron 50.0%
AGAGAATGAGAGGTCCCTCA+TGG + chr3_3:80639769-80639788 Msa0476730:CDS 50.0%
TGAAACAGGTACGGTCCTCA+TGG + chr3_3:80639822-80639841 Msa0476730:intron 50.0%
AGACGAGCTGGAAAACTTCC+TGG + chr3_3:80640110-80640129 Msa0476730:CDS 50.0%
! AGTACTGAGGTTGTGTCACC+AGG - chr3_3:80640131-80640150 None:intergenic 50.0%
GGAAGAGGATAAGGCAAGGT+TGG + chr3_3:80640676-80640695 Msa0476730:intron 50.0%
!! GCAAGGTTGGTGCAAGAAAC+CGG + chr3_3:80640689-80640708 Msa0476730:CDS 50.0%
!! CAAGGTTGGTGCAAGAAACC+GGG + chr3_3:80640690-80640709 Msa0476730:CDS 50.0%
ACTGAGACGAGGAAGCTTGA+AGG + chr3_3:80641049-80641068 Msa0476730:three_prime_UTR 50.0%
GAAAGAGTGGTGAGGATCGG+AGG - chr3_3:80636659-80636678 None:intergenic 55.0%
!! AGGGCGTTGTTGAGCCAGTT+AGG - chr3_3:80636691-80636710 None:intergenic 55.0%
! GGTGTCGAGGTTGCGAAGAA+GGG - chr3_3:80636710-80636729 None:intergenic 55.0%
! TGGTGTCGAGGTTGCGAAGA+AGG - chr3_3:80636711-80636730 None:intergenic 55.0%
! GTTGTTGTTGGTTGTGGCGG+TGG - chr3_3:80636743-80636762 None:intergenic 55.0%
! GGTGTCGAGGTTGAGGAAGT+TGG - chr3_3:80636770-80636789 None:intergenic 55.0%
TTGACCGGAGGATTGGGAAC+CGG - chr3_3:80636794-80636813 None:intergenic 55.0%
GTTCCCAATCCTCCGGTCAA+TGG + chr3_3:80636794-80636813 Msa0476730:CDS 55.0%
GAGCCATTGACCGGAGGATT+GGG - chr3_3:80636800-80636819 None:intergenic 55.0%
AGAGCCATTGACCGGAGGAT+TGG - chr3_3:80636801-80636820 None:intergenic 55.0%
TGACTTCGCTGTGGTTTCGG+TGG - chr3_3:80636837-80636856 None:intergenic 55.0%
GAAGTCATCGACGACGTCAC+CGG + chr3_3:80636850-80636869 Msa0476730:CDS 55.0%
GGTATGAAGGCCGAGGAAAG+CGG + chr3_3:80636877-80636896 Msa0476730:CDS 55.0%
TGTTGCCTCACCGCTTTCCT+CGG - chr3_3:80636890-80636909 None:intergenic 55.0%
GTGTTTGAGAATCGCCACGC+CGG + chr3_3:80637002-80637021 Msa0476730:CDS 55.0%
ATCCTGGGCAACTGGTCAAC+CGG - chr3_3:80637024-80637043 None:intergenic 55.0%
ATGCGACTGCGACATCAACG+AGG - chr3_3:80637815-80637834 None:intergenic 55.0%
TCCTTGTCCTGTACACCCTC+CGG + chr3_3:80638346-80638365 Msa0476730:intron 55.0%
! TTAGTGACCGGAGGGTGTAC+AGG - chr3_3:80638356-80638375 None:intergenic 55.0%
ACAGGAGTTTCACCAGGGGA+AGG + chr3_3:80639626-80639645 Msa0476730:intron 55.0%
! GTTTCACCAGGGGAAGGTAC+AGG + chr3_3:80639632-80639651 Msa0476730:CDS 55.0%
CGTTGAAGAGCAAGCGCAAG+AGG + chr3_3:80640792-80640811 Msa0476730:CDS 55.0%
GAGTGGTGAGGATCGGAGGT+TGG - chr3_3:80636655-80636674 None:intergenic 60.0%
!! TGGCGTTGACGTTGGTGTCG+AGG - chr3_3:80636723-80636742 None:intergenic 60.0%
TTCCTCAACCTCGACACCGC+CGG + chr3_3:80636772-80636791 Msa0476730:CDS 60.0%
AGGACGGGAGAGCCATTGAC+CGG - chr3_3:80636809-80636828 None:intergenic 60.0%
GTTTCGGTGGAGGACAGGAC+GGG - chr3_3:80636824-80636843 None:intergenic 60.0%
GGTTTCGGTGGAGGACAGGA+CGG - chr3_3:80636825-80636844 None:intergenic 60.0%
CTGTGGTTTCGGTGGAGGAC+AGG - chr3_3:80636829-80636848 None:intergenic 60.0%
CTTCGCTGTGGTTTCGGTGG+AGG - chr3_3:80636834-80636853 None:intergenic 60.0%
CGTCGTCGATGACTTCGCTG+TGG - chr3_3:80636846-80636865 None:intergenic 60.0%
GGAAAGCGGTGAGGCAACAG+CGG + chr3_3:80636891-80636910 Msa0476730:CDS 60.0%
CAGCGGAGGGAGTGATGAAC+TGG + chr3_3:80636908-80636927 Msa0476730:CDS 60.0%
CTCTCTCTCTGGACTCTGGG+TGG + chr3_3:80637263-80637282 Msa0476730:intron 60.0%
! ACCGGAGGGTGTACAGGACA+AGG - chr3_3:80638350-80638369 None:intergenic 60.0%
GTTGCTCCTGTACCTTCCCC+TGG - chr3_3:80639641-80639660 None:intergenic 60.0%
!! TGTGGCGGTGGCGTTGACGT+TGG - chr3_3:80636731-80636750 None:intergenic 65.0%
! AACCGGCGGTGTCGAGGTTG+AGG - chr3_3:80636777-80636796 None:intergenic 65.0%
! ATTGGGAACCGGCGGTGTCG+AGG - chr3_3:80636783-80636802 None:intergenic 65.0%
!! ACCGCCGGTTCCCAATCCTC+CGG + chr3_3:80636787-80636806 Msa0476730:CDS 65.0%
ACCGGAGGATTGGGAACCGG+CGG - chr3_3:80636791-80636810 None:intergenic 65.0%
ACGGGAGAGCCATTGACCGG+AGG - chr3_3:80636806-80636825 None:intergenic 65.0%
!! CGTCACCGGCGCTGGTATGA+AGG + chr3_3:80636864-80636883 Msa0476730:CDS 65.0%
CTCGGCCTTCATACCAGCGC+CGG - chr3_3:80636872-80636891 None:intergenic 65.0%
GAAGGCCGAGGAAAGCGGTG+AGG + chr3_3:80636882-80636901 Msa0476730:CDS 65.0%
AAGCGGTGAGGCAACAGCGG+AGG + chr3_3:80636894-80636913 Msa0476730:CDS 65.0%
AGCGGTGAGGCAACAGCGGA+GGG + chr3_3:80636895-80636914 Msa0476730:CDS 65.0%
!! GAGCGTCGATCCTGGGCAAC+TGG - chr3_3:80637032-80637051 None:intergenic 65.0%
!! GCCAGCTGAGCGTCGATCCT+GGG - chr3_3:80637039-80637058 None:intergenic 65.0%
!! TGCCAGCTGAGCGTCGATCC+TGG - chr3_3:80637040-80637059 None:intergenic 65.0%
CAGCTGCAGCTGCAGCACCT+AGG + chr3_3:80641076-80641095 Msa0476730:three_prime_UTR 65.0%
ATCGACGACGTCACCGGCGC+TGG + chr3_3:80636856-80636875 Msa0476730:CDS 70.0%
!! CGGCGCTGGTATGAAGGCCG+AGG + chr3_3:80636870-80636889 Msa0476730:CDS 70.0%
GGGCAACTGGTCAACCGGCG+TGG - chr3_3:80637019-80637038 None:intergenic 70.0%
! CGCCGGTTGACCAGTTGCCC+AGG + chr3_3:80637019-80637038 Msa0476730:CDS 70.0%
GCCCAGGATCGACGCTCAGC+TGG + chr3_3:80637035-80637054 Msa0476730:CDS 70.0%
! GGTGCTGCAGCTGCAGCTGC+AGG - chr3_3:80641075-80641094 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 80636372 80641451 80636372 ID=Msa0476730;Name=Msa0476730
chr3_3 mRNA 80636372 80641451 80636372 ID=Msa0476730-mRNA-1;Parent=Msa0476730;Name=Msa0476730-mRNA-1;_AED=0.11;_eAED=0.11;_QI=220|1|1|1|1|1|5|520|421
chr3_3 exon 80636372 80637149 80636372 ID=Msa0476730-mRNA-1:exon:22107;Parent=Msa0476730-mRNA-1
chr3_3 exon 80637829 80637949 80637829 ID=Msa0476730-mRNA-1:exon:22108;Parent=Msa0476730-mRNA-1
chr3_3 exon 80639630 80639829 80639630 ID=Msa0476730-mRNA-1:exon:22109;Parent=Msa0476730-mRNA-1
chr3_3 exon 80640062 80640193 80640062 ID=Msa0476730-mRNA-1:exon:22110;Parent=Msa0476730-mRNA-1
chr3_3 exon 80640677 80641451 80640677 ID=Msa0476730-mRNA-1:exon:22111;Parent=Msa0476730-mRNA-1
chr3_3 five_prime_UTR 80636372 80636591 80636372 ID=Msa0476730-mRNA-1:five_prime_utr;Parent=Msa0476730-mRNA-1
chr3_3 CDS 80636592 80637149 80636592 ID=Msa0476730-mRNA-1:cds;Parent=Msa0476730-mRNA-1
chr3_3 CDS 80637829 80637949 80637829 ID=Msa0476730-mRNA-1:cds;Parent=Msa0476730-mRNA-1
chr3_3 CDS 80639630 80639829 80639630 ID=Msa0476730-mRNA-1:cds;Parent=Msa0476730-mRNA-1
chr3_3 CDS 80640062 80640193 80640062 ID=Msa0476730-mRNA-1:cds;Parent=Msa0476730-mRNA-1
chr3_3 CDS 80640677 80640931 80640677 ID=Msa0476730-mRNA-1:cds;Parent=Msa0476730-mRNA-1
chr3_3 three_prime_UTR 80640932 80641451 80640932 ID=Msa0476730-mRNA-1:three_prime_utr;Parent=Msa0476730-mRNA-1
Gene Sequence

>Msa0476730

ATGGCGTATCACAACCAAGACAACCCACTCCACCATTTCACAGAACAACAACAACAACAACCAACCTCCGATCCTCACCACTCTTTCCAAACTGCACCTAACTGGCTCAACAACGCCCTTCTTCGCAACCTCGACACCAACGTCAACGCCACCGCCACAACCAACAACAACAGTACCAACTTCCTCAACCTCGACACCGCCGGTTCCCAATCCTCCGGTCAATGGCTCTCCCGTCCTGTCCTCCACCGAAACCACAGCGAAGTCATCGACGACGTCACCGGCGCTGGTATGAAGGCCGAGGAAAGCGGTGAGGCAACAGCGGAGGGAGTGATGAACTGGCAGAAAGCGAAACACAAAGGTGAAATAATGGCGCACCCGTTGTATGAACAGCTTCTATCAGCACACGTGTCGTGTTTGAGAATCGCCACGCCGGTTGACCAGTTGCCCAGGATCGACGCTCAGCTGGCAGAGTCACAGAATGTTGTTGCCAAGTACTCTGCGTTAGGACAACAGGGCATGCTTGATAACGATGATAATAAACAACTCGACCACTTCATGTCGCATTATGTTTTGTTGCTTTGTTCGTTCAAAGAACAGCTCCAACAACATGTCCGAGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAACAGTCCTTACAAAGTCTAACAGGAGTTTCACCAGGGGAAGGTACAGGAGCAACAATGTCTGAAGATGAAGATGAGCAAGTAGACAGTGATGTTAATCTGTTTGATGGAGGTTTGGATGGTTCAGATAATAGCATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCATGAGTTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGAAAACTTCCTGGTGACACAACCTCAGTACTTAAAGATTGGTGGCAATCACATTCAAAGTGGCCTTATCCTACTGAAGAGGATAAGGCAAGGTTGGTGCAAGAAACCGGGTTGCAATTGAAACAGATCAATAACTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTAATGCGTTGAAGAGCAAGCGCAAGAGGTATTTCTATATTAAAAAAATAGTCCTTTTCATAATCTTAAATTTGCATGAACTCTGCACCGATCTTGAATTAGAAATAAGTAATGCAGGTGATAAAAGTGACGGTCGTTACATGTAA

Protein sequence

>Msa0476730

MAYHNQDNPLHHFTEQQQQQPTSDPHHSFQTAPNWLNNALLRNLDTNVNATATTNNNSTNFLNLDTAGSQSSGQWLSRPVLHRNHSEVIDDVTGAGMKAEESGEATAEGVMNWQKAKHKGEIMAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAESQNVVAKYSALGQQGMLDNDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDVNLFDGGLDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNALKSKRKRYFYIKKIVLFIILNLHELCTDLELEISNAGDKSDGRYM*