Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277300 | G7ZZ33 | 93.921 | 329 | 20 | 0 | 1 | 329 | 1 | 329 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073270 | Msa1277300 | 0.813581 | 2.380879e-51 | -8.615850e-47 |
| Msa0089540 | Msa1277300 | 0.825370 | 4.864373e-54 | -8.615850e-47 |
| Msa0099430 | Msa1277300 | -0.800701 | 1.274112e-48 | -8.615850e-47 |
| Msa0623310 | Msa1277300 | 0.819271 | 1.267798e-52 | -8.615850e-47 |
| Msa0654400 | Msa1277300 | -0.800784 | 1.225135e-48 | -8.615850e-47 |
| Msa0685390 | Msa1277300 | -0.839549 | 1.482409e-57 | -8.615850e-47 |
| Msa0812610 | Msa1277300 | 0.842516 | 2.465724e-58 | -8.615850e-47 |
| Msa0132080 | Msa1277300 | -0.806287 | 8.849429e-50 | -8.615850e-47 |
| Msa0148000 | Msa1277300 | -0.809786 | 1.592701e-50 | -8.615850e-47 |
| Msa1235590 | Msa1277300 | 0.861857 | 7.636892e-64 | -8.615850e-47 |
| Msa1277300 | Msa1290090 | -0.800500 | 1.400201e-48 | -8.615850e-47 |
| Msa1277300 | Msa1297080 | 0.811458 | 6.929880e-51 | -8.615850e-47 |
| Msa1277300 | Msa1315850 | 0.932152 | 1.306885e-94 | -8.615850e-47 |
| Msa1277300 | Msa1321490 | 0.816083 | 6.637994e-52 | -8.615850e-47 |
| Msa1277300 | Msa1328860 | 0.823979 | 1.034498e-53 | -8.615850e-47 |
| Msa1277300 | Msa1334560 | 0.802262 | 6.096997e-49 | -8.615850e-47 |
| Msa1277300 | Msa1339530 | 0.801052 | 1.080074e-48 | -8.615850e-47 |
| Msa1277300 | Msa1376310 | 0.800880 | 1.170980e-48 | -8.615850e-47 |
| Msa1277300 | Msa1422820 | -0.812297 | 4.550268e-51 | -8.615850e-47 |
| Msa0476730 | Msa1277300 | -0.817827 | 2.694030e-52 | -8.615850e-47 |
| Msa1011140 | Msa1277300 | -0.805347 | 1.394568e-49 | -8.615850e-47 |
| Msa1025200 | Msa1277300 | 0.800675 | 1.289666e-48 | -8.615850e-47 |
| Msa1025220 | Msa1277300 | 0.803177 | 3.947859e-49 | -8.615850e-47 |
| Msa1104020 | Msa1277300 | -0.806831 | 6.794539e-50 | -8.615850e-47 |
| Msa0277320 | Msa1277300 | 0.814278 | 1.671226e-51 | -8.615850e-47 |
| Msa1186670 | Msa1277300 | 0.830428 | 2.953811e-55 | -8.615850e-47 |
| Msa1206030 | Msa1277300 | 0.809954 | 1.466026e-50 | -8.615850e-47 |
| Msa0852890 | Msa1277300 | 0.824156 | 9.404125e-54 | -8.615850e-47 |
| Msa0870220 | Msa1277300 | -0.809499 | 1.835980e-50 | -8.615850e-47 |
| Msa0903460 | Msa1277300 | -0.819075 | 1.404829e-52 | -8.615850e-47 |
| Msa0935930 | Msa1277300 | -0.827686 | 1.364285e-54 | -8.615850e-47 |
| Msa0965800 | Msa1277300 | 0.802177 | 6.347768e-49 | -8.615850e-47 |
| Msa0966120 | Msa1277300 | 0.808777 | 2.620896e-50 | -8.615850e-47 |
| Msa0972930 | Msa1277300 | -0.803176 | 3.949676e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277300 | MtrunA17_Chr8g0345591 | 93.921 | 329 | 20 | 0 | 1 | 329 | 1 | 329 | 0.0 | 638 |
| Msa1277300 | MtrunA17_Chr7g0276511 | 68.156 | 179 | 43 | 1 | 1 | 179 | 9 | 173 | 2.23e-73 | 224 |
| Msa1277300 | MtrunA17_Chr7g0276501 | 67.327 | 101 | 27 | 2 | 235 | 329 | 9 | 109 | 4.50e-43 | 144 |
| Msa1277300 | MtrunA17_Chr8g0392901 | 31.034 | 203 | 103 | 9 | 137 | 319 | 87 | 272 | 3.79e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277300 | AT2G46890.1 | 68.712 | 326 | 97 | 1 | 4 | 329 | 2 | 322 | 9.30e-158 | 444 |
| Msa1277300 | AT1G18180.2 | 32.394 | 213 | 119 | 8 | 110 | 314 | 61 | 256 | 2.07e-13 | 70.1 |
| Msa1277300 | AT1G18180.1 | 32.394 | 213 | 119 | 8 | 110 | 314 | 61 | 256 | 2.78e-13 | 69.7 |
| Msa1277300 | AT1G73650.2 | 33.491 | 212 | 118 | 9 | 110 | 314 | 61 | 256 | 1.90e-11 | 64.3 |
| Msa1277300 | AT1G73650.5 | 33.491 | 212 | 118 | 9 | 110 | 314 | 61 | 256 | 2.25e-11 | 63.9 |
| Msa1277300 | AT1G73650.3 | 33.491 | 212 | 118 | 9 | 110 | 314 | 61 | 256 | 2.66e-11 | 63.9 |
Find 87 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACATGGATGGACCTTTAT+TGG | 0.173583 | 8_3:-12480540 | Msa1277300:CDS |
| CAACAAACCTTTGAGTATCT+TGG | 0.284159 | 8_3:-12480781 | Msa1277300:CDS |
| TCAATGTCAATCTTCTCTTC+TGG | 0.286755 | 8_3:-12482946 | Msa1277300:CDS |
| ACTGAGATGGGTCAACAATA+TGG | 0.318813 | 8_3:-12482393 | Msa1277300:CDS |
| TTACTATGCAACACACTCTT+TGG | 0.320860 | 8_3:-12482541 | Msa1277300:CDS |
| AATCTTCTCTTCTGGCTCAT+TGG | 0.322941 | 8_3:-12482938 | Msa1277300:CDS |
| GAGACAAAAGAAGGGTTGTT+TGG | 0.326425 | 8_3:+12483028 | None:intergenic |
| GACGCTGTGGTGGTGGGGAC+TGG | 0.351750 | 8_3:-12480583 | Msa1277300:CDS |
| ACAGGGATCACTGTCCAATA+TGG | 0.356410 | 8_3:+12482576 | None:intergenic |
| GTGTCAAGTACAGGGATTAC+AGG | 0.372568 | 8_3:+12480648 | None:intergenic |
| ATGGACCTTTATTGGAGCTT+TGG | 0.373438 | 8_3:-12480532 | Msa1277300:CDS |
| TGCTGTTTATGTCTCTCAGC+AGG | 0.384130 | 8_3:-12482343 | Msa1277300:intron |
| AGACAAAAGAAGGGTTGTTT+GGG | 0.385909 | 8_3:+12483029 | None:intergenic |
| ATTAACCAAAGCTCCAATAA+AGG | 0.385986 | 8_3:+12480527 | None:intergenic |
| CTTTGGCTCAATATAATTTG+TGG | 0.386121 | 8_3:-12482524 | Msa1277300:CDS |
| TGCAGATGATTGATCCATAT+TGG | 0.392989 | 8_3:-12482590 | Msa1277300:intron |
| ACAAAGTGCACAACATATAA+AGG | 0.399002 | 8_3:+12480804 | None:intergenic |
| GCTATTGTTGTCTGTTTAAG+TGG | 0.413288 | 8_3:-12480750 | Msa1277300:CDS |
| TTGGTGAGACGCTGTGGTGG+TGG | 0.429994 | 8_3:-12480590 | Msa1277300:CDS |
| TATGTACCCAGTGACTAGAT+TGG | 0.437217 | 8_3:+12482909 | None:intergenic |
| GTCAAATCCAATCTAGTCAC+TGG | 0.443204 | 8_3:-12482916 | Msa1277300:CDS |
| CATAGGCCGGTGTCAAGTAC+AGG | 0.445863 | 8_3:+12480639 | None:intergenic |
| CTGACACATACACGAAAATC+AGG | 0.446004 | 8_3:+12480107 | None:intergenic |
| GTGAGATAGAAGATGATTGA+TGG | 0.448035 | 8_3:+12483085 | None:intergenic |
| TTTGAGTATCTTGGACTTGG+TGG | 0.450705 | 8_3:-12480772 | Msa1277300:CDS |
| GGGGACTGGTTGTGTTTGCA+TGG | 0.461450 | 8_3:-12480569 | Msa1277300:CDS |
| CTGTACTTGACACCGGCCTA+TGG | 0.464031 | 8_3:-12480638 | Msa1277300:CDS |
| TGGTGAGACGCTGTGGTGGT+GGG | 0.471699 | 8_3:-12480589 | Msa1277300:CDS |
| AGCGTCTCACCAAAGTAATT+CGG | 0.476940 | 8_3:+12480600 | None:intergenic |
| AGCCGGCGTCCGAATTACTT+TGG | 0.477007 | 8_3:-12480609 | Msa1277300:CDS |
| TAGACGTGAAAAGTGGCAAT+GGG | 0.478654 | 8_3:-12482439 | Msa1277300:CDS |
| AGCTTATGTGACTAGGCTTG+TGG | 0.481619 | 8_3:-12480493 | Msa1277300:CDS |
| TAGTAATGAACAAGCATCAC+AGG | 0.485910 | 8_3:+12482558 | None:intergenic |
| AACAACAAGTTCAAAGAGCT+TGG | 0.488952 | 8_3:-12480675 | Msa1277300:CDS |
| CAACTTCAGCGTGGATACCT+TGG | 0.496899 | 8_3:-12480413 | Msa1277300:CDS |
| AGACTGGCGTTTCACTGAGA+TGG | 0.499038 | 8_3:-12482406 | Msa1277300:CDS |
| TGTGTTTAGCTTATGTGACT+AGG | 0.502231 | 8_3:-12480500 | Msa1277300:CDS |
| CATACAGTTGAGACAAAAGA+AGG | 0.505563 | 8_3:+12483019 | None:intergenic |
| GACTGGCGTTTCACTGAGAT+GGG | 0.508793 | 8_3:-12482405 | Msa1277300:CDS |
| ACCTTTGAGTATCTTGGACT+TGG | 0.512692 | 8_3:-12480775 | Msa1277300:CDS |
| ATTACTTTAGACGTGAAAAG+TGG | 0.516981 | 8_3:-12482446 | Msa1277300:CDS |
| TAGAAGATGATTGATGGAAG+AGG | 0.517613 | 8_3:+12483091 | None:intergenic |
| AAAAGAAGGGTTGTTTGGGA+TGG | 0.528967 | 8_3:+12483033 | None:intergenic |
| CATGGAACCTTGGACATGGA+TGG | 0.532497 | 8_3:-12480551 | Msa1277300:CDS |
| GTTGTGTTTGCATGGAACCT+TGG | 0.534053 | 8_3:-12480561 | Msa1277300:CDS |
| AAAATAAAAGTGATTGTATG+TGG | 0.541108 | 8_3:+12480167 | None:intergenic |
| GGTGAGACGCTGTGGTGGTG+GGG | 0.545609 | 8_3:-12480588 | Msa1277300:CDS |
| AATATGGAAAACATTGGTGG+TGG | 0.549525 | 8_3:-12482377 | Msa1277300:CDS |
| GAGCATTGGCAAAGAGAAGA+GGG | 0.556714 | 8_3:+12482978 | None:intergenic |
| AACAATATGGAAAACATTGG+TGG | 0.558953 | 8_3:-12482380 | Msa1277300:CDS |
| AAAACAATACAACACGTAGC+AGG | 0.560278 | 8_3:+12480295 | None:intergenic |
| AGTGCACAACATATAAAGGA+AGG | 0.575974 | 8_3:+12480808 | None:intergenic |
| GAAGGAAATGACTTAAACCA+AGG | 0.582801 | 8_3:+12480396 | None:intergenic |
| GATTGTTCGACACATCCGAC+AGG | 0.583026 | 8_3:-12480205 | Msa1277300:three_prime_UTR |
| AGAGCATTGGCAAAGAGAAG+AGG | 0.585487 | 8_3:+12482977 | None:intergenic |
| TTGTCTCAACTGTATGGACA+TGG | 0.593248 | 8_3:-12483012 | Msa1277300:CDS |
| AATGGGGTGCTAGAGAAGAC+TGG | 0.595480 | 8_3:-12482422 | Msa1277300:CDS |
| ATATGGAAAACATTGGTGGT+GGG | 0.596512 | 8_3:-12482376 | Msa1277300:CDS |
| CACATGTGTTAATGTCCTGT+CGG | 0.601910 | 8_3:+12480190 | None:intergenic |
| ATTGAAGAAGAAGAGAGCAT+TGG | 0.603170 | 8_3:+12482964 | None:intergenic |
| TTAGACGTGAAAAGTGGCAA+TGG | 0.603246 | 8_3:-12482440 | Msa1277300:CDS |
| TTGATGAGTGATAATTGTTG+AGG | 0.603485 | 8_3:+12483059 | None:intergenic |
| TGGCTCAATATAATTTGTGG+AGG | 0.605658 | 8_3:-12482521 | Msa1277300:CDS |
| GTCAACAATATGGAAAACAT+TGG | 0.608096 | 8_3:-12482383 | Msa1277300:CDS |
| ACCAAGTCCAAGATACTCAA+AGG | 0.615173 | 8_3:+12480774 | None:intergenic |
| TTTGCATGGAACCTTGGACA+TGG | 0.616196 | 8_3:-12480555 | Msa1277300:CDS |
| TAAAGGTCCATCCATGTCCA+AGG | 0.620673 | 8_3:+12480544 | None:intergenic |
| GTAATCCCTGTACTTGACAC+CGG | 0.623890 | 8_3:-12480645 | Msa1277300:CDS |
| CCGGCCTATGGTATTACAGC+CGG | 0.626049 | 8_3:-12480626 | Msa1277300:CDS |
| TCAAATCCAATCTAGTCACT+GGG | 0.631364 | 8_3:-12482915 | Msa1277300:intron |
| ATAGGCCGGTGTCAAGTACA+GGG | 0.634937 | 8_3:+12480640 | None:intergenic |
| CACCAAAGTAATTCGGACGC+CGG | 0.635129 | 8_3:+12480607 | None:intergenic |
| GTGCACAACATATAAAGGAA+GGG | 0.637619 | 8_3:+12480809 | None:intergenic |
| ATTACTTTGGTGAGACGCTG+TGG | 0.656576 | 8_3:-12480596 | Msa1277300:CDS |
| TTATGTGACTAGGCTTGTGG+AGG | 0.657735 | 8_3:-12480490 | Msa1277300:CDS |
| GTGTCAGTGTCTAAACATGT+TGG | 0.664724 | 8_3:-12480091 | Msa1277300:three_prime_UTR |
| AGTAATGAACAAGCATCACA+GGG | 0.679888 | 8_3:+12482559 | None:intergenic |
| ATGATTCTATCAAATAAACA+AGG | 0.681616 | 8_3:+12480272 | None:intergenic |
| ACAATCAAACACAAGTACAT+CGG | 0.681887 | 8_3:+12480222 | None:intergenic |
| GACGCCGGCTGTAATACCAT+AGG | 0.682562 | 8_3:+12480622 | None:intergenic |
| ATACAGTTGAGACAAAAGAA+GGG | 0.686916 | 8_3:+12483020 | None:intergenic |
| ACTTTGGTGAGACGCTGTGG+TGG | 0.689623 | 8_3:-12480593 | Msa1277300:CDS |
| CCGGCTGTAATACCATAGGC+CGG | 0.693621 | 8_3:+12480626 | None:intergenic |
| ATCAGAAGACAACTTCAGCG+TGG | 0.695728 | 8_3:-12480422 | Msa1277300:CDS |
| CATTGGCAAAGAGAAGAGGG+TGG | 0.704400 | 8_3:+12482981 | None:intergenic |
| AGACGTGAAAAGTGGCAATG+GGG | 0.716295 | 8_3:-12482438 | Msa1277300:CDS |
| AGTCACATAAGCTAAACACA+AGG | 0.719129 | 8_3:+12480503 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGAAATTTTACAATTTTA+GGG | - | chr8_3:12481206-12481225 | Msa1277300:intron | 10.0% |
| !!! | TATTAGTTATTTCTATTTTT+CGG | - | chr8_3:12481328-12481347 | Msa1277300:intron | 10.0% |
| !!! | ATGATTCAATTTTCAAATTT+TGG | - | chr8_3:12480568-12480587 | Msa1277300:CDS | 15.0% |
| !!! | AATTTTCAAATTTTGGTTTA+TGG | - | chr8_3:12480575-12480594 | Msa1277300:CDS | 15.0% |
| !!! | ATTTTCAAATTTTGGTTTAT+GGG | - | chr8_3:12480576-12480595 | Msa1277300:CDS | 15.0% |
| !!! | TTTTGGATAAATAATCAATT+TGG | - | chr8_3:12480965-12480984 | Msa1277300:intron | 15.0% |
| !!! | GATTGAAATTTTACAATTTT+AGG | - | chr8_3:12481205-12481224 | Msa1277300:intron | 15.0% |
| !! | TTGAATTATATATAATTTGG+AGG | - | chr8_3:12481235-12481254 | Msa1277300:intron | 15.0% |
| !! | TCAAAGAAAATTGATATATT+TGG | - | chr8_3:12481453-12481472 | Msa1277300:intron | 15.0% |
| !!! | CTGTTTTATTTTTTATAGAT+AGG | + | chr8_3:12481594-12481613 | None:intergenic | 15.0% |
| !!! | CTATTTTTATTATTTTAGTC+AGG | + | chr8_3:12481835-12481854 | None:intergenic | 15.0% |
| !!! | ACTTTTTTCTAACAATTAAA+TGG | - | chr8_3:12481986-12482005 | Msa1277300:intron | 15.0% |
| !! | ATAATTGAATGTAATTACGT+CGG | - | chr8_3:12480407-12480426 | Msa1277300:CDS | 20.0% |
| !! | ATTGAATCATTTAATCAACT+TGG | + | chr8_3:12480558-12480577 | None:intergenic | 20.0% |
| !!! | ATTAACATTTTGCAATTTCA+AGG | + | chr8_3:12481052-12481071 | None:intergenic | 20.0% |
| !! | AAAATAAGTGAATAATGTCT+GGG | - | chr8_3:12481144-12481163 | Msa1277300:intron | 20.0% |
| !!! | TTGCTTTTATTTTATATCAG+AGG | + | chr8_3:12481426-12481445 | None:intergenic | 20.0% |
| !!! | GATATATTTGGTTCAAAATT+TGG | - | chr8_3:12481465-12481484 | Msa1277300:intron | 20.0% |
| !! | TCAAAGAAAATTGATGTATT+TGG | + | chr8_3:12481492-12481511 | None:intergenic | 20.0% |
| !!! | TTATTTTTTATAGATAGGAC+TGG | + | chr8_3:12481589-12481608 | None:intergenic | 20.0% |
| !! | AAATATAGAAGATTAAGAGA+TGG | + | chr8_3:12482172-12482191 | None:intergenic | 20.0% |
| !!! | TAGATTTTTTTTTTGACAGA+AGG | + | chr8_3:12482195-12482214 | None:intergenic | 20.0% |
| !!! | TTCTTAATTTTAACATCTGA+AGG | + | chr8_3:12482849-12482868 | None:intergenic | 20.0% |
| !! | ATGATTCTATCAAATAAACA+AGG | + | chr8_3:12482955-12482974 | None:intergenic | 20.0% |
| !! | AAAATAAAAGTGATTGTATG+TGG | + | chr8_3:12483060-12483079 | None:intergenic | 20.0% |
| !!! | TGTCTGTTTGGTTTAATTTT+TGG | - | chr8_3:12480948-12480967 | Msa1277300:intron | 25.0% |
| ! | GAAAATAAGTGAATAATGTC+TGG | - | chr8_3:12481143-12481162 | Msa1277300:intron | 25.0% |
| ! | TTGATATCAGATTATGAAAG+AGG | - | chr8_3:12481173-12481192 | Msa1277300:intron | 25.0% |
| ! | TGATATCAGATTATGAAAGA+GGG | - | chr8_3:12481174-12481193 | Msa1277300:intron | 25.0% |
| ! | TCAAAAAAATTTGTCATGTG+CGG | + | chr8_3:12481393-12481412 | None:intergenic | 25.0% |
| !! | TTGCTTATATTTTGTAACAG+AGG | - | chr8_3:12481519-12481538 | Msa1277300:intron | 25.0% |
| !! | TGCTTATATTTTGTAACAGA+GGG | - | chr8_3:12481520-12481539 | Msa1277300:intron | 25.0% |
| !!! | ACATTTCATAGGATTTTTTG+TGG | - | chr8_3:12481672-12481691 | Msa1277300:intron | 25.0% |
| ! | AACATTAATATCGTTGTGTT+TGG | - | chr8_3:12482079-12482098 | Msa1277300:intron | 25.0% |
| TTGATGAGTGATAATTGTTG+AGG | + | chr8_3:12480168-12480187 | None:intergenic | 30.0% | |
| ATACAGTTGAGACAAAAGAA+GGG | + | chr8_3:12480207-12480226 | None:intergenic | 30.0% | |
| AGTGGAATATGATGAAAGAT+TGG | + | chr8_3:12480346-12480365 | None:intergenic | 30.0% | |
| TAATCAAAGATGTGTTTGTC+TGG | + | chr8_3:12480468-12480487 | None:intergenic | 30.0% | |
| ! | ACATCTTTGATTAGAAGTGT+CGG | - | chr8_3:12480475-12480494 | Msa1277300:CDS | 30.0% |
| ! | CTTTGGCTCAATATAATTTG+TGG | - | chr8_3:12480700-12480719 | Msa1277300:CDS | 30.0% |
| !! | ACATTGTGATTTTGTTGACT+TGG | - | chr8_3:12480730-12480749 | Msa1277300:CDS | 30.0% |
| !!! | CATTGTGATTTTGTTGACTT+GGG | - | chr8_3:12480731-12480750 | Msa1277300:CDS | 30.0% |
| ATTACTTTAGACGTGAAAAG+TGG | - | chr8_3:12480778-12480797 | Msa1277300:CDS | 30.0% | |
| GTCAACAATATGGAAAACAT+TGG | - | chr8_3:12480841-12480860 | Msa1277300:intron | 30.0% | |
| AACAATATGGAAAACATTGG+TGG | - | chr8_3:12480844-12480863 | Msa1277300:intron | 30.0% | |
| CAATTCATCAAACATGTTCA+AGG | + | chr8_3:12480930-12480949 | None:intergenic | 30.0% | |
| TGTTTGATGAATTGTCTGTT+TGG | - | chr8_3:12480936-12480955 | Msa1277300:intron | 30.0% | |
| !! | TGACATTAAGTTGGTAATGT+CGG | - | chr8_3:12481110-12481129 | Msa1277300:intron | 30.0% |
| !!! | ATTTCTATTTTTCGGTGTTG+AGG | - | chr8_3:12481336-12481355 | Msa1277300:intron | 30.0% |
| !!! | TTTCTATTTTTCGGTGTTGA+GGG | - | chr8_3:12481337-12481356 | Msa1277300:intron | 30.0% |
| GATAATTGGCACATTCTTAA+AGG | + | chr8_3:12481367-12481386 | None:intergenic | 30.0% | |
| TGGCGATAAAAACATTTCAT+AGG | - | chr8_3:12481661-12481680 | Msa1277300:intron | 30.0% | |
| ! | TGTGAAGAATTGATTTCTGT+AGG | - | chr8_3:12482018-12482037 | Msa1277300:intron | 30.0% |
| ATCTATATTTCCTTTGTGCT+AGG | - | chr8_3:12482210-12482229 | Msa1277300:intron | 30.0% | |
| AGAGTGAATTTGAATTGCAA+TGG | - | chr8_3:12482291-12482310 | Msa1277300:intron | 30.0% | |
| AATTGCAATGGAAATCAACA+CGG | - | chr8_3:12482303-12482322 | Msa1277300:intron | 30.0% | |
| ! | TTTTCAATGCACAAATGACA+AGG | + | chr8_3:12482351-12482370 | None:intergenic | 30.0% |
| !! | TTGTTGCAGATGTTTTTGAT+TGG | - | chr8_3:12482387-12482406 | Msa1277300:CDS | 30.0% |
| ACAAAGTGCACAACATATAA+AGG | + | chr8_3:12482423-12482442 | None:intergenic | 30.0% | |
| ATTAACCAAAGCTCCAATAA+AGG | + | chr8_3:12482700-12482719 | None:intergenic | 30.0% | |
| ACAATCAAACACAAGTACAT+CGG | + | chr8_3:12483005-12483024 | None:intergenic | 30.0% | |
| TAGAAGATGATTGATGGAAG+AGG | + | chr8_3:12480136-12480155 | None:intergenic | 35.0% | |
| GTGAGATAGAAGATGATTGA+TGG | + | chr8_3:12480142-12480161 | None:intergenic | 35.0% | |
| AGACAAAAGAAGGGTTGTTT+GGG | + | chr8_3:12480198-12480217 | None:intergenic | 35.0% | |
| CATACAGTTGAGACAAAAGA+AGG | + | chr8_3:12480208-12480227 | None:intergenic | 35.0% | |
| ! | CTTCTTTTGTCTCAACTGTA+TGG | - | chr8_3:12480206-12480225 | Msa1277300:three_prime_UTR | 35.0% |
| ! | ATTGAAGAAGAAGAGAGCAT+TGG | + | chr8_3:12480263-12480282 | None:intergenic | 35.0% |
| TCAATGTCAATCTTCTCTTC+TGG | - | chr8_3:12480278-12480297 | Msa1277300:three_prime_UTR | 35.0% | |
| TCAAATCCAATCTAGTCACT+GGG | - | chr8_3:12480309-12480328 | Msa1277300:three_prime_UTR | 35.0% | |
| TTCATCATATTCCACTGACA+CGG | - | chr8_3:12480350-12480369 | Msa1277300:three_prime_UTR | 35.0% | |
| TGCAGATGATTGATCCATAT+TGG | - | chr8_3:12480634-12480653 | Msa1277300:CDS | 35.0% | |
| AGTAATGAACAAGCATCACA+GGG | + | chr8_3:12480668-12480687 | None:intergenic | 35.0% | |
| TAGTAATGAACAAGCATCAC+AGG | + | chr8_3:12480669-12480688 | None:intergenic | 35.0% | |
| TTACTATGCAACACACTCTT+TGG | - | chr8_3:12480683-12480702 | Msa1277300:CDS | 35.0% | |
| ! | TGGCTCAATATAATTTGTGG+AGG | - | chr8_3:12480703-12480722 | Msa1277300:CDS | 35.0% |
| !!! | TGATTTTGTTGACTTGGGTT+TGG | - | chr8_3:12480736-12480755 | Msa1277300:CDS | 35.0% |
| AATATGGAAAACATTGGTGG+TGG | - | chr8_3:12480847-12480866 | Msa1277300:intron | 35.0% | |
| ! | ATATGGAAAACATTGGTGGT+GGG | - | chr8_3:12480848-12480867 | Msa1277300:intron | 35.0% |
| GATGCAGTTGTACAATTTCA+GGG | + | chr8_3:12480992-12481011 | None:intergenic | 35.0% | |
| TGATGCAGTTGTACAATTTC+AGG | + | chr8_3:12480993-12481012 | None:intergenic | 35.0% | |
| AATCAAATCCGTTCCTTTGT+TGG | - | chr8_3:12481069-12481088 | Msa1277300:intron | 35.0% | |
| TATCACTACCAACAAAGGAA+CGG | + | chr8_3:12481080-12481099 | None:intergenic | 35.0% | |
| !! | TTCCTTTGTTGGTAGTGATA+TGG | - | chr8_3:12481080-12481099 | Msa1277300:intron | 35.0% |
| GGACTAAAGTGACATTAAGT+TGG | - | chr8_3:12481101-12481120 | Msa1277300:intron | 35.0% | |
| !!! | TTCTATTTTTCGGTGTTGAG+GGG | - | chr8_3:12481338-12481357 | Msa1277300:intron | 35.0% |
| AAAAATTTGTCATGTGCGGA+CGG | + | chr8_3:12481389-12481408 | None:intergenic | 35.0% | |
| CTTGTCTCACTGAAATTTGA+TGG | - | chr8_3:12481641-12481660 | Msa1277300:intron | 35.0% | |
| ACGTGTGTGAAATTTGAACT+TGG | + | chr8_3:12481862-12481881 | None:intergenic | 35.0% | |
| CAAAAACAACGCTAACACAT+AGG | + | chr8_3:12481911-12481930 | None:intergenic | 35.0% | |
| !! | CTATGTGTTAGCGTTGTTTT+TGG | - | chr8_3:12481909-12481928 | Msa1277300:intron | 35.0% |
| !! | GGAATTTCTAGTTTCAGCTA+TGG | - | chr8_3:12482100-12482119 | Msa1277300:intron | 35.0% |
| AAATAACAGACCTAGCACAA+AGG | + | chr8_3:12482223-12482242 | None:intergenic | 35.0% | |
| !!! | CTAGGTCTGTTATTTTTCAG+CGG | - | chr8_3:12482228-12482247 | Msa1277300:intron | 35.0% |
| GTTATTGTGAGTTGTTAGTC+AGG | - | chr8_3:12482268-12482287 | Msa1277300:intron | 35.0% | |
| GTGCACAACATATAAAGGAA+GGG | + | chr8_3:12482418-12482437 | None:intergenic | 35.0% | |
| AGTGCACAACATATAAAGGA+AGG | + | chr8_3:12482419-12482438 | None:intergenic | 35.0% | |
| CAACAAACCTTTGAGTATCT+TGG | - | chr8_3:12482443-12482462 | Msa1277300:CDS | 35.0% | |
| GCTATTGTTGTCTGTTTAAG+TGG | - | chr8_3:12482474-12482493 | Msa1277300:CDS | 35.0% | |
| AACAACAAGTTCAAAGAGCT+TGG | - | chr8_3:12482549-12482568 | Msa1277300:CDS | 35.0% | |
| AGTCACATAAGCTAAACACA+AGG | + | chr8_3:12482724-12482743 | None:intergenic | 35.0% | |
| ! | TGTGTTTAGCTTATGTGACT+AGG | - | chr8_3:12482724-12482743 | Msa1277300:intron | 35.0% |
| GAAGGAAATGACTTAAACCA+AGG | + | chr8_3:12482831-12482850 | None:intergenic | 35.0% | |
| AAAACAATACAACACGTAGC+AGG | + | chr8_3:12482932-12482951 | None:intergenic | 35.0% | |
| AAAAGAAGGGTTGTTTGGGA+TGG | + | chr8_3:12480194-12480213 | None:intergenic | 40.0% | |
| GAGACAAAAGAAGGGTTGTT+TGG | + | chr8_3:12480199-12480218 | None:intergenic | 40.0% | |
| TTGTCTCAACTGTATGGACA+TGG | - | chr8_3:12480212-12480231 | Msa1277300:three_prime_UTR | 40.0% | |
| !! | AATCTTCTCTTCTGGCTCAT+TGG | - | chr8_3:12480286-12480305 | Msa1277300:three_prime_UTR | 40.0% |
| GTCAAATCCAATCTAGTCAC+TGG | - | chr8_3:12480308-12480327 | Msa1277300:three_prime_UTR | 40.0% | |
| TATGTACCCAGTGACTAGAT+TGG | + | chr8_3:12480318-12480337 | None:intergenic | 40.0% | |
| TTAGACGTGAAAAGTGGCAA+TGG | - | chr8_3:12480784-12480803 | Msa1277300:CDS | 40.0% | |
| TAGACGTGAAAAGTGGCAAT+GGG | - | chr8_3:12480785-12480804 | Msa1277300:CDS | 40.0% | |
| ACTGAGATGGGTCAACAATA+TGG | - | chr8_3:12480831-12480850 | Msa1277300:CDS | 40.0% | |
| GTCCATATCACTACCAACAA+AGG | + | chr8_3:12481085-12481104 | None:intergenic | 40.0% | |
| TTCACACACGTCAGTCAAAA+TGG | - | chr8_3:12481871-12481890 | Msa1277300:intron | 40.0% | |
| ACCTTTGAGTATCTTGGACT+TGG | - | chr8_3:12482449-12482468 | Msa1277300:CDS | 40.0% | |
| ACCAAGTCCAAGATACTCAA+AGG | + | chr8_3:12482453-12482472 | None:intergenic | 40.0% | |
| TTTGAGTATCTTGGACTTGG+TGG | - | chr8_3:12482452-12482471 | Msa1277300:CDS | 40.0% | |
| AGCGTCTCACCAAAGTAATT+CGG | + | chr8_3:12482627-12482646 | None:intergenic | 40.0% | |
| ATGGACCTTTATTGGAGCTT+TGG | - | chr8_3:12482692-12482711 | Msa1277300:intron | 40.0% | |
| CACATGTGTTAATGTCCTGT+CGG | + | chr8_3:12483037-12483056 | None:intergenic | 40.0% | |
| CTGACACATACACGAAAATC+AGG | + | chr8_3:12483120-12483139 | None:intergenic | 40.0% | |
| GTGTCAGTGTCTAAACATGT+TGG | - | chr8_3:12483133-12483152 | Msa1277300:CDS | 40.0% | |
| !! | GAGCATTGGCAAAGAGAAGA+GGG | + | chr8_3:12480249-12480268 | None:intergenic | 45.0% |
| !! | AGAGCATTGGCAAAGAGAAG+AGG | + | chr8_3:12480250-12480269 | None:intergenic | 45.0% |
| TGTTAATGTGTCCGTGTCAG+TGG | + | chr8_3:12480364-12480383 | None:intergenic | 45.0% | |
| ACAGGGATCACTGTCCAATA+TGG | + | chr8_3:12480651-12480670 | None:intergenic | 45.0% | |
| AGACGTGAAAAGTGGCAATG+GGG | - | chr8_3:12480786-12480805 | Msa1277300:CDS | 45.0% | |
| ! | TGCTGTTTATGTCTCTCAGC+AGG | - | chr8_3:12480881-12480900 | Msa1277300:intron | 45.0% |
| GTTTATGTCTCTCAGCAGGT+TGG | - | chr8_3:12480885-12480904 | Msa1277300:intron | 45.0% | |
| !!! | TCTCTCAGCAGGTTGGTTTT+TGG | - | chr8_3:12480892-12480911 | Msa1277300:intron | 45.0% |
| TGGTGGGATTTGACATGTTC+CGG | - | chr8_3:12481272-12481291 | Msa1277300:intron | 45.0% | |
| CAGAATGTAAGCCCATGTGT+TGG | + | chr8_3:12481307-12481326 | None:intergenic | 45.0% | |
| CACACGTCAGTCAAAATGGA+CGG | - | chr8_3:12481875-12481894 | Msa1277300:intron | 45.0% | |
| GTGTCAAGTACAGGGATTAC+AGG | + | chr8_3:12482579-12482598 | None:intergenic | 45.0% | |
| GTAATCCCTGTACTTGACAC+CGG | - | chr8_3:12482579-12482598 | Msa1277300:CDS | 45.0% | |
| ATTACTTTGGTGAGACGCTG+TGG | - | chr8_3:12482628-12482647 | Msa1277300:intron | 45.0% | |
| GTTGTGTTTGCATGGAACCT+TGG | - | chr8_3:12482663-12482682 | Msa1277300:intron | 45.0% | |
| TTTGCATGGAACCTTGGACA+TGG | - | chr8_3:12482669-12482688 | Msa1277300:intron | 45.0% | |
| TAAAGGTCCATCCATGTCCA+AGG | + | chr8_3:12482683-12482702 | None:intergenic | 45.0% | |
| GGACATGGATGGACCTTTAT+TGG | - | chr8_3:12482684-12482703 | Msa1277300:intron | 45.0% | |
| AGCTTATGTGACTAGGCTTG+TGG | - | chr8_3:12482731-12482750 | Msa1277300:intron | 45.0% | |
| TTATGTGACTAGGCTTGTGG+AGG | - | chr8_3:12482734-12482753 | Msa1277300:intron | 45.0% | |
| ATCAGAAGACAACTTCAGCG+TGG | - | chr8_3:12482802-12482821 | Msa1277300:intron | 45.0% | |
| !!! | ATTTTGAATTATATATAATT+TGG | - | chr8_3:12481232-12481251 | Msa1277300:intron | 5.0% |
| !!! | TTTTATTTTCTTAAAATATT+AGG | - | chr8_3:12483071-12483090 | Msa1277300:CDS | 5.0% |
| CATTGGCAAAGAGAAGAGGG+TGG | + | chr8_3:12480246-12480265 | None:intergenic | 50.0% | |
| GTCTGGTGTCTGACACATGT+CGG | + | chr8_3:12480451-12480470 | None:intergenic | 50.0% | |
| ! | AATGGGGTGCTAGAGAAGAC+TGG | - | chr8_3:12480802-12480821 | Msa1277300:CDS | 50.0% |
| AGACTGGCGTTTCACTGAGA+TGG | - | chr8_3:12480818-12480837 | Msa1277300:CDS | 50.0% | |
| GACTGGCGTTTCACTGAGAT+GGG | - | chr8_3:12480819-12480838 | Msa1277300:CDS | 50.0% | |
| TGGAGGACTAAGTTCCTGCT+TGG | - | chr8_3:12481252-12481271 | Msa1277300:intron | 50.0% | |
| AGGACTAAGTTCCTGCTTGG+TGG | - | chr8_3:12481255-12481274 | Msa1277300:intron | 50.0% | |
| GGACTAAGTTCCTGCTTGGT+GGG | - | chr8_3:12481256-12481275 | Msa1277300:intron | 50.0% | |
| CATGTCAAATCCCACCAAGC+AGG | + | chr8_3:12481269-12481288 | None:intergenic | 50.0% | |
| !! | CATGTGTTGGTGTTGGACAC+CGG | + | chr8_3:12481294-12481313 | None:intergenic | 50.0% |
| GGTGTCCAACACCAACACAT+GGG | - | chr8_3:12481293-12481312 | Msa1277300:intron | 50.0% | |
| ! | GTAAGCCCATGTGTTGGTGT+TGG | + | chr8_3:12481301-12481320 | None:intergenic | 50.0% |
| GTCATGTGCGGACGGATAAT+TGG | + | chr8_3:12481381-12481400 | None:intergenic | 50.0% | |
| ! | ATAGGCCGGTGTCAAGTACA+GGG | + | chr8_3:12482587-12482606 | None:intergenic | 50.0% |
| CACCAAAGTAATTCGGACGC+CGG | + | chr8_3:12482620-12482639 | None:intergenic | 50.0% | |
| CATGGAACCTTGGACATGGA+TGG | - | chr8_3:12482673-12482692 | Msa1277300:intron | 50.0% | |
| CAACTTCAGCGTGGATACCT+TGG | - | chr8_3:12482811-12482830 | Msa1277300:intron | 50.0% | |
| GATTGTTCGACACATCCGAC+AGG | - | chr8_3:12483019-12483038 | Msa1277300:CDS | 50.0% | |
| CGGTGTCCAACACCAACACA+TGG | - | chr8_3:12481292-12481311 | Msa1277300:intron | 55.0% | |
| ! | CATAGGCCGGTGTCAAGTAC+AGG | + | chr8_3:12482588-12482607 | None:intergenic | 55.0% |
| CTGTACTTGACACCGGCCTA+TGG | - | chr8_3:12482586-12482605 | Msa1277300:CDS | 55.0% | |
| CCGGCTGTAATACCATAGGC+CGG | + | chr8_3:12482601-12482620 | None:intergenic | 55.0% | |
| CCGGCCTATGGTATTACAGC+CGG | - | chr8_3:12482598-12482617 | Msa1277300:intron | 55.0% | |
| ! | GACGCCGGCTGTAATACCAT+AGG | + | chr8_3:12482605-12482624 | None:intergenic | 55.0% |
| AGCCGGCGTCCGAATTACTT+TGG | - | chr8_3:12482615-12482634 | Msa1277300:intron | 55.0% | |
| ACTTTGGTGAGACGCTGTGG+TGG | - | chr8_3:12482631-12482650 | Msa1277300:intron | 55.0% | |
| !! | GGGGACTGGTTGTGTTTGCA+TGG | - | chr8_3:12482655-12482674 | Msa1277300:intron | 55.0% |
| TTGGTGAGACGCTGTGGTGG+TGG | - | chr8_3:12482634-12482653 | Msa1277300:intron | 60.0% | |
| TGGTGAGACGCTGTGGTGGT+GGG | - | chr8_3:12482635-12482654 | Msa1277300:intron | 60.0% | |
| ! | GGTGAGACGCTGTGGTGGTG+GGG | - | chr8_3:12482636-12482655 | Msa1277300:intron | 65.0% |
| !! | GACGCTGTGGTGGTGGGGAC+TGG | - | chr8_3:12482641-12482660 | Msa1277300:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 12480085 | 12483161 | 12480085 | ID=Msa1277300;Name=Msa1277300 |
| chr8_3 | mRNA | 12480085 | 12483161 | 12480085 | ID=Msa1277300-mRNA-1;Parent=Msa1277300;Name=Msa1277300-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|1|0.66|1|1|1|3|286|329 |
| chr8_3 | exon | 12480085 | 12480850 | 12480085 | ID=Msa1277300-mRNA-1:exon:5074;Parent=Msa1277300-mRNA-1 |
| chr8_3 | exon | 12482344 | 12482607 | 12482344 | ID=Msa1277300-mRNA-1:exon:5073;Parent=Msa1277300-mRNA-1 |
| chr8_3 | exon | 12482916 | 12483161 | 12482916 | ID=Msa1277300-mRNA-1:exon:5072;Parent=Msa1277300-mRNA-1 |
| chr8_3 | CDS | 12482916 | 12483161 | 12482916 | ID=Msa1277300-mRNA-1:cds;Parent=Msa1277300-mRNA-1 |
| chr8_3 | CDS | 12482344 | 12482607 | 12482344 | ID=Msa1277300-mRNA-1:cds;Parent=Msa1277300-mRNA-1 |
| chr8_3 | CDS | 12480371 | 12480850 | 12480371 | ID=Msa1277300-mRNA-1:cds;Parent=Msa1277300-mRNA-1 |
| chr8_3 | three_prime_UTR | 12480085 | 12480370 | 12480085 | ID=Msa1277300-mRNA-1:three_prime_utr;Parent=Msa1277300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
