Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317600 | A0A072TMQ2 | 97.638 | 254 | 6 | 0 | 1 | 254 | 1 | 254 | 0.0 | 518 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0154270 | Msa1317600 | 0.810656 | 1.033946e-50 | -8.615850e-47 |
| Msa1317600 | Msa1406020 | 0.820651 | 6.128381e-53 | -8.615850e-47 |
| Msa0387970 | Msa1317600 | 0.825392 | 4.807376e-54 | -8.615850e-47 |
| Msa0432720 | Msa1317600 | 0.804869 | 1.755938e-49 | -8.615850e-47 |
| Msa0984000 | Msa1317600 | 0.825334 | 4.962005e-54 | -8.615850e-47 |
| Msa1069960 | Msa1317600 | 0.819732 | 9.953095e-53 | -8.615850e-47 |
| Msa1119860 | Msa1317600 | 0.823753 | 1.168641e-53 | -8.615850e-47 |
| Msa0525270 | Msa1317600 | 0.821484 | 3.939868e-53 | -8.615850e-47 |
| Msa0525280 | Msa1317600 | 0.834233 | 3.375018e-56 | -8.615850e-47 |
| Msa0548210 | Msa1317600 | 0.800082 | 1.702649e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317600 | MtrunA17_Chr8g0348061 | 97.638 | 254 | 6 | 0 | 1 | 254 | 1 | 254 | 0.0 | 518 |
| Msa1317600 | MtrunA17_Chr8g0357051 | 51.934 | 181 | 81 | 3 | 65 | 244 | 54 | 229 | 2.31e-68 | 212 |
| Msa1317600 | MtrunA17_Chr2g0310191 | 55.556 | 162 | 70 | 1 | 84 | 245 | 70 | 229 | 2.21e-65 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317600 | AT2G46220.1 | 56.000 | 250 | 94 | 3 | 1 | 246 | 1 | 238 | 1.15e-95 | 281 |
| Msa1317600 | AT1G79510.2 | 55.689 | 167 | 71 | 2 | 79 | 244 | 71 | 235 | 4.40e-67 | 209 |
| Msa1317600 | AT1G79510.1 | 55.689 | 167 | 71 | 2 | 79 | 244 | 71 | 235 | 4.40e-67 | 209 |
| Msa1317600 | AT1G16320.1 | 50.829 | 181 | 81 | 3 | 72 | 245 | 56 | 235 | 2.29e-64 | 202 |
Find 73 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAATTATTACTTGAATA+TGG | 0.136305 | 8_4:+19047965 | Msa1317600:CDS |
| GGATCCTCTGAATACGTTTA+TGG | 0.205720 | 8_4:+19050098 | Msa1317600:CDS |
| GAGATTATGTTGTGGATAAT+TGG | 0.235184 | 8_4:-19047588 | None:intergenic |
| TGAGGGGTAACGTGAATTTC+CGG | 0.243453 | 8_4:-19047720 | None:intergenic |
| AGAATTACAAATCGATCTTT+TGG | 0.258281 | 8_4:+19050127 | Msa1317600:CDS |
| GCCTGTTGAGAATGTAATTA+TGG | 0.286889 | 8_4:+19050215 | Msa1317600:CDS |
| AATGTGGATGGGTTTGGATT+AGG | 0.300340 | 8_4:-19047541 | None:intergenic |
| CGGGAAAATGTGGATGGGTT+TGG | 0.302517 | 8_4:-19047547 | None:intergenic |
| CAGAATTATTACTTGAATAT+GGG | 0.350053 | 8_4:+19047966 | Msa1317600:CDS |
| TATGCAAAATTGAACGCAAT+TGG | 0.355570 | 8_4:+19047795 | Msa1317600:CDS |
| TATACATAATATGCACAATT+TGG | 0.380734 | 8_4:-19050514 | None:intergenic |
| ACGCAATTGGGTCAAAGAAC+AGG | 0.385908 | 8_4:+19047808 | Msa1317600:CDS |
| CCGGGAAAATTGAATTATGA+AGG | 0.386360 | 8_4:-19047617 | None:intergenic |
| CAGGGATGATATTGTATTGA+AGG | 0.391549 | 8_4:+19050077 | Msa1317600:intron |
| GAGGGGTAACGTGAATTTCC+GGG | 0.402324 | 8_4:-19047719 | None:intergenic |
| GATCCTCTGAATACGTTTAT+GGG | 0.403315 | 8_4:+19050099 | Msa1317600:CDS |
| TTGCATAGGGTTTGAAATTG+TGG | 0.412813 | 8_4:-19047779 | None:intergenic |
| AACTTAGCTTTGATATCTAT+AGG | 0.428899 | 8_4:+19048039 | Msa1317600:CDS |
| ATGGTTCGCTGGACGGTTCA+CGG | 0.433992 | 8_4:+19050234 | Msa1317600:CDS |
| GAAAGCCGCGGTAGGTTTGA+TGG | 0.435547 | 8_4:+19050276 | Msa1317600:CDS |
| ACCATAATTACATTCTCAAC+AGG | 0.447606 | 8_4:-19050216 | None:intergenic |
| ATTTCAAAGTAAGTTGGTCC+TGG | 0.452612 | 8_4:-19050435 | None:intergenic |
| TGGTTCGCTGGACGGTTCAC+GGG | 0.459878 | 8_4:+19050235 | Msa1317600:CDS |
| TTTCTGTAACATATAACCTA+TGG | 0.463411 | 8_4:+19050594 | Msa1317600:three_prime_UTR |
| TCAACTAATTACAGCAGATC+AGG | 0.472001 | 8_4:-19050638 | None:intergenic |
| ATGCAAAATTGAACGCAATT+GGG | 0.472060 | 8_4:+19047796 | Msa1317600:CDS |
| GAAGAATTGATTCAATCTCT+TGG | 0.484168 | 8_4:+19050399 | Msa1317600:CDS |
| AGTTCTTTATAAAATAGATC+AGG | 0.492246 | 8_4:-19048020 | None:intergenic |
| CTTGGCTGTCCGCAGACCCC+AGG | 0.492505 | 8_4:+19050417 | Msa1317600:CDS |
| TTATGCTATACGAACTTTGA+GGG | 0.497026 | 8_4:+19047989 | Msa1317600:CDS |
| TTTCAAAGTAAGTTGGTCCT+GGG | 0.497418 | 8_4:-19050434 | None:intergenic |
| GAAGATATTTCAAAGTAAGT+TGG | 0.497988 | 8_4:-19050441 | None:intergenic |
| GTTATGCTATACGAACTTTG+AGG | 0.499486 | 8_4:+19047988 | Msa1317600:CDS |
| GATTTCGAACCACTCTTCAC+CGG | 0.503377 | 8_4:-19047918 | None:intergenic |
| CGGCTTTCCCATGGAACTCG+TGG | 0.505084 | 8_4:-19050261 | None:intergenic |
| AGTTATTAAGCGGGAAAATG+TGG | 0.505167 | 8_4:-19047557 | None:intergenic |
| GATCGGAACGTGAAGCAGTA+TGG | 0.508351 | 8_4:+19047882 | Msa1317600:CDS |
| TGTAATTATGGTTCGCTGGA+CGG | 0.510229 | 8_4:+19050227 | Msa1317600:CDS |
| CGGGAAAATTGAATTATGAA+GGG | 0.510510 | 8_4:-19047616 | None:intergenic |
| AGGCAAGATTTACGAACATC+GGG | 0.513299 | 8_4:+19050326 | Msa1317600:CDS |
| ACGGGATCCCACGAGTTCCA+TGG | 0.525112 | 8_4:+19050253 | Msa1317600:CDS |
| AACCTACCGCGGCTTTCCCA+TGG | 0.527295 | 8_4:-19050270 | None:intergenic |
| GAAGATTTCATGTGAAGTGA+AGG | 0.530001 | 8_4:+19047833 | Msa1317600:CDS |
| AGAATGTAATTATGGTTCGC+TGG | 0.530985 | 8_4:+19050223 | Msa1317600:CDS |
| CGGGATCCCACGAGTTCCAT+GGG | 0.531141 | 8_4:+19050254 | Msa1317600:CDS |
| ATTAAGCGGGAAAATGTGGA+TGG | 0.535756 | 8_4:-19047553 | None:intergenic |
| GACTCTTCTAGTACACTCCC+CGG | 0.556564 | 8_4:+19047701 | Msa1317600:CDS |
| ACTGACATCACTTTAAACCT+AGG | 0.556783 | 8_4:-19050375 | None:intergenic |
| CGCAATTGGGTCAAAGAACA+GGG | 0.559140 | 8_4:+19047809 | Msa1317600:CDS |
| GGCTTTCCCATGGAACTCGT+GGG | 0.560830 | 8_4:-19050260 | None:intergenic |
| TTAAGCGGGAAAATGTGGAT+GGG | 0.562964 | 8_4:-19047552 | None:intergenic |
| ATATCTTGCCATGGAATCGA+AGG | 0.566004 | 8_4:-19050152 | None:intergenic |
| AAGGCAAGATTTACGAACAT+CGG | 0.568854 | 8_4:+19050325 | Msa1317600:CDS |
| TTTGTCAAGTTTATACTCAG+AGG | 0.572049 | 8_4:-19050301 | None:intergenic |
| GATTTATTGAGTTATTAAGC+GGG | 0.575745 | 8_4:-19047566 | None:intergenic |
| GACATCACTTTAAACCTAGG+AGG | 0.582014 | 8_4:-19050372 | None:intergenic |
| GGATTTATTGAGTTATTAAG+CGG | 0.596461 | 8_4:-19047567 | None:intergenic |
| TAAGTTGGTCCTGGGGTCTG+CGG | 0.605321 | 8_4:-19050426 | None:intergenic |
| TTCAAAGTAAGTTGGTCCTG+GGG | 0.626091 | 8_4:-19050433 | None:intergenic |
| TAGGTTTAAAGTGATGTCAG+TGG | 0.634165 | 8_4:+19050377 | Msa1317600:CDS |
| ATCAGATACATATAAACCAT+AGG | 0.641419 | 8_4:-19050610 | None:intergenic |
| TGCTATACGAACTTTGAGGG+AGG | 0.642836 | 8_4:+19047992 | Msa1317600:CDS |
| AGGGGTAACGTGAATTTCCG+GGG | 0.645824 | 8_4:-19047718 | None:intergenic |
| TTCCATGGGAAAGCCGCGGT+AGG | 0.661780 | 8_4:+19050268 | Msa1317600:CDS |
| TGGTTCGAAATCGAGCAAAG+AGG | 0.665218 | 8_4:+19047929 | Msa1317600:CDS |
| TATGGTTTATATGTATCTGA+TGG | 0.666292 | 8_4:+19050612 | Msa1317600:three_prime_UTR |
| GGGAAAATGAGATTATGTTG+TGG | 0.667233 | 8_4:-19047596 | None:intergenic |
| GAGTATAAACTTGACAAACA+AGG | 0.672357 | 8_4:+19050306 | Msa1317600:CDS |
| ATACCCATAAACGTATTCAG+AGG | 0.674215 | 8_4:-19050102 | None:intergenic |
| CGAGTTCCATGGGAAAGCCG+CGG | 0.685486 | 8_4:+19050264 | Msa1317600:CDS |
| TTACAATATAAATATATACA+CGG | 0.686544 | 8_4:-19050671 | None:intergenic |
| AGGTTCCATCAAACCTACCG+CGG | 0.698339 | 8_4:-19050281 | None:intergenic |
| GGATAGACATAAACAGTGTG+TGG | 0.720922 | 8_4:+19050190 | Msa1317600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACAATATAAATATATACA+CGG | - | chr8_4:19050674-19050693 | None:intergenic | 10.0% |
| !!! | AGAAAATTTCAATTTTTTTC+CGG | - | chr8_4:19047639-19047658 | None:intergenic | 15.0% |
| !!! | TTTTTCAACTTATTTTCATA+AGG | + | chr8_4:19048328-19048347 | Msa1317600:intron | 15.0% |
| !! | AAATGGTCAATTTAATTATT+TGG | + | chr8_4:19048924-19048943 | Msa1317600:intron | 15.0% |
| !! | AATGGTCAATTTAATTATTT+GGG | + | chr8_4:19048925-19048944 | Msa1317600:intron | 15.0% |
| !!! | ATTTATAGTTGTGATATTTT+TGG | + | chr8_4:19049061-19049080 | Msa1317600:intron | 15.0% |
| !!! | ACTTTTTTTATAACCTATAT+TGG | + | chr8_4:19049149-19049168 | Msa1317600:intron | 15.0% |
| !!! | ACATATTTGATTTCATATAT+TGG | - | chr8_4:19049915-19049934 | None:intergenic | 15.0% |
| !!! | TTTGGATTAGGATATTTTTA+GGG | - | chr8_4:19047532-19047551 | None:intergenic | 20.0% |
| !!! | GAAAATTTCAATTTTTTTCC+GGG | - | chr8_4:19047638-19047657 | None:intergenic | 20.0% |
| !! | ACAGAATTATTACTTGAATA+TGG | + | chr8_4:19047965-19047984 | Msa1317600:CDS | 20.0% |
| !! | CAGAATTATTACTTGAATAT+GGG | + | chr8_4:19047966-19047985 | Msa1317600:CDS | 20.0% |
| !! | AGTTCTTTATAAAATAGATC+AGG | - | chr8_4:19048023-19048042 | None:intergenic | 20.0% |
| !! | TTAGTGATAGAAATCAATAT+TGG | + | chr8_4:19048570-19048589 | Msa1317600:intron | 20.0% |
| !! | TAGTGATAGAAATCAATATT+GGG | + | chr8_4:19048571-19048590 | Msa1317600:intron | 20.0% |
| !! | TTAGCAAATGATTTATGAAT+TGG | + | chr8_4:19048694-19048713 | Msa1317600:intron | 20.0% |
| !! | TAAATTGACCATTTATATGT+GGG | - | chr8_4:19048918-19048937 | None:intergenic | 20.0% |
| !! | TTAAATTGACCATTTATATG+TGG | - | chr8_4:19048919-19048938 | None:intergenic | 20.0% |
| !! | ATGGTCAATTTAATTATTTG+GGG | + | chr8_4:19048926-19048945 | Msa1317600:intron | 20.0% |
| !! | AAATAAATTCATCCAGTTAT+GGG | - | chr8_4:19049577-19049596 | None:intergenic | 20.0% |
| !!! | ATTTGATTTCATATATTGGA+TGG | - | chr8_4:19049911-19049930 | None:intergenic | 20.0% |
| !! | TATACATAATATGCACAATT+TGG | - | chr8_4:19050517-19050536 | None:intergenic | 20.0% |
| !!! | TTGGATTAGGATATTTTTAG+GGG | - | chr8_4:19047531-19047550 | None:intergenic | 25.0% |
| !!! | GTTTGGATTAGGATATTTTT+AGG | - | chr8_4:19047533-19047552 | None:intergenic | 25.0% |
| ! | GATTTATTGAGTTATTAAGC+GGG | - | chr8_4:19047569-19047588 | None:intergenic | 25.0% |
| ! | GGATTTATTGAGTTATTAAG+CGG | - | chr8_4:19047570-19047589 | None:intergenic | 25.0% |
| !!! | AACTTAGCTTTGATATCTAT+AGG | + | chr8_4:19048039-19048058 | Msa1317600:CDS | 25.0% |
| ! | TTTAGCGTAGAATGATAAAA+TGG | + | chr8_4:19048119-19048138 | Msa1317600:intron | 25.0% |
| !!! | AATATTTTTGGGAATAGAGT+AGG | - | chr8_4:19048197-19048216 | None:intergenic | 25.0% |
| !! | CCTTGCACTTAAATATTTTT+GGG | - | chr8_4:19048208-19048227 | None:intergenic | 25.0% |
| ! | ATGACAAGTTTGACTATTTA+GGG | - | chr8_4:19048521-19048540 | None:intergenic | 25.0% |
| !! | AAATCAATATTGGGTTTTCA+AGG | + | chr8_4:19048580-19048599 | Msa1317600:intron | 25.0% |
| !! | AATCAATATTGGGTTTTCAA+GGG | + | chr8_4:19048581-19048600 | Msa1317600:intron | 25.0% |
| ! | TTTGCTTACATTTATCTTGA+TGG | + | chr8_4:19049203-19049222 | Msa1317600:intron | 25.0% |
| ! | TTCTGTATTCAGAAAGAATT+TGG | + | chr8_4:19049350-19049369 | Msa1317600:intron | 25.0% |
| !!! | TCCTCTGAAATATAAAATGA+GGG | - | chr8_4:19049477-19049496 | None:intergenic | 25.0% |
| ! | GAAATAAATTCATCCAGTTA+TGG | - | chr8_4:19049578-19049597 | None:intergenic | 25.0% |
| !!! | ACAATTGTTGTTTTCTCATT+TGG | - | chr8_4:19049600-19049619 | None:intergenic | 25.0% |
| ! | GAGTATAGAAAACATTGATA+TGG | - | chr8_4:19050013-19050032 | None:intergenic | 25.0% |
| !! | AGAATTACAAATCGATCTTT+TGG | + | chr8_4:19050127-19050146 | Msa1317600:CDS | 25.0% |
| !!! | AGATATTTTTCAAAGCTTTG+TGG | + | chr8_4:19050169-19050188 | Msa1317600:CDS | 25.0% |
| ! | GAAGATATTTCAAAGTAAGT+TGG | - | chr8_4:19050444-19050463 | None:intergenic | 25.0% |
| !! | AGAAAAAGACATTTTCTCAA+AGG | - | chr8_4:19050579-19050598 | None:intergenic | 25.0% |
| ! | TTTCTGTAACATATAACCTA+TGG | + | chr8_4:19050594-19050613 | Msa1317600:three_prime_UTR | 25.0% |
| ! | ATCAGATACATATAAACCAT+AGG | - | chr8_4:19050613-19050632 | None:intergenic | 25.0% |
| ! | TATGGTTTATATGTATCTGA+TGG | + | chr8_4:19050612-19050631 | Msa1317600:three_prime_UTR | 25.0% |
| !!! | TTGTTTGACCCTACTTTTTA+TGG | - | chr8_4:19047507-19047526 | None:intergenic | 30.0% |
| GAGATTATGTTGTGGATAAT+TGG | - | chr8_4:19047591-19047610 | None:intergenic | 30.0% | |
| CGGGAAAATTGAATTATGAA+GGG | - | chr8_4:19047619-19047638 | None:intergenic | 30.0% | |
| ! | CCTTCATAATTCAATTTTCC+CGG | + | chr8_4:19047617-19047636 | Msa1317600:five_prime_UTR | 30.0% |
| ! | AAAGCTTCGATTTTTCTGTT+GGG | - | chr8_4:19047675-19047694 | None:intergenic | 30.0% |
| ! | ATTGCGTTCAATTTTGCATA+GGG | - | chr8_4:19047795-19047814 | None:intergenic | 30.0% |
| ! | AATTGCGTTCAATTTTGCAT+AGG | - | chr8_4:19047796-19047815 | None:intergenic | 30.0% |
| TATGCAAAATTGAACGCAAT+TGG | + | chr8_4:19047795-19047814 | Msa1317600:CDS | 30.0% | |
| ATGCAAAATTGAACGCAATT+GGG | + | chr8_4:19047796-19047815 | Msa1317600:CDS | 30.0% | |
| TTATGCTATACGAACTTTGA+GGG | + | chr8_4:19047989-19048008 | Msa1317600:CDS | 30.0% | |
| CCCAAAAATATTTAAGTGCA+AGG | + | chr8_4:19048205-19048224 | Msa1317600:intron | 30.0% | |
| ! | GCCTTGCACTTAAATATTTT+TGG | - | chr8_4:19048209-19048228 | None:intergenic | 30.0% |
| CATGACAAGTTTGACTATTT+AGG | - | chr8_4:19048522-19048541 | None:intergenic | 30.0% | |
| CTAAATAGTCAAACTTGTCA+TGG | + | chr8_4:19048520-19048539 | Msa1317600:intron | 30.0% | |
| ATGTAACGTGTTAGTCAAAA+TGG | + | chr8_4:19048733-19048752 | Msa1317600:intron | 30.0% | |
| TAATGACCAAAGTTAGTAGA+GGG | - | chr8_4:19048760-19048779 | None:intergenic | 30.0% | |
| CAACGACAACAATTAATAGA+GGG | - | chr8_4:19048846-19048865 | None:intergenic | 30.0% | |
| AATAACAAAGCAAGACTCAT+TGG | - | chr8_4:19049044-19049063 | None:intergenic | 30.0% | |
| GTGAGTAAGCTATAAGTAAA+GGG | - | chr8_4:19049131-19049150 | None:intergenic | 30.0% | |
| AGTGAGTAAGCTATAAGTAA+AGG | - | chr8_4:19049132-19049151 | None:intergenic | 30.0% | |
| AATACAGAAATGCAATGCTT+AGG | - | chr8_4:19049339-19049358 | None:intergenic | 30.0% | |
| ATACTAGCCAAAGTAATAAG+AGG | + | chr8_4:19049398-19049417 | Msa1317600:intron | 30.0% | |
| !! | GACCTGTTACTCTTTTAATT+GGG | + | chr8_4:19049420-19049439 | Msa1317600:intron | 30.0% |
| AACCCAATTAAAAGAGTAAC+AGG | - | chr8_4:19049425-19049444 | None:intergenic | 30.0% | |
| !! | CCTCTGAAATATAAAATGAG+GGG | - | chr8_4:19049476-19049495 | None:intergenic | 30.0% |
| !! | CTCCTCTGAAATATAAAATG+AGG | - | chr8_4:19049478-19049497 | None:intergenic | 30.0% |
| CAAAATCATATACTGTCCAT+TGG | + | chr8_4:19049501-19049520 | Msa1317600:intron | 30.0% | |
| ATAGAGATTTGAATGCAAAG+AGG | + | chr8_4:19049722-19049741 | Msa1317600:intron | 30.0% | |
| ATTTCATATATTGGATGGAG+TGG | - | chr8_4:19049906-19049925 | None:intergenic | 30.0% | |
| TCATATTCAAAGCAAGTAGT+GGG | - | chr8_4:19049941-19049960 | None:intergenic | 30.0% | |
| ATCATATTCAAAGCAAGTAG+TGG | - | chr8_4:19049942-19049961 | None:intergenic | 30.0% | |
| ! | CTACTTGCTTTGAATATGAT+AGG | + | chr8_4:19049942-19049961 | Msa1317600:intron | 30.0% |
| ! | TTGCTTTGAATATGATAGGT+TGG | + | chr8_4:19049946-19049965 | Msa1317600:intron | 30.0% |
| !! | AATATGATAGGTTGGTTACT+TGG | + | chr8_4:19049954-19049973 | Msa1317600:intron | 30.0% |
| ! | ACATCTCTTTTGTGTTTTTC+AGG | + | chr8_4:19050058-19050077 | Msa1317600:intron | 30.0% |
| ! | CATCTCTTTTGTGTTTTTCA+GGG | + | chr8_4:19050059-19050078 | Msa1317600:intron | 30.0% |
| ! | CTTTGAAAAATATCTTGCCA+TGG | - | chr8_4:19050164-19050183 | None:intergenic | 30.0% |
| ACCATAATTACATTCTCAAC+AGG | - | chr8_4:19050219-19050238 | None:intergenic | 30.0% | |
| TTTGTCAAGTTTATACTCAG+AGG | - | chr8_4:19050304-19050323 | None:intergenic | 30.0% | |
| GAGTATAAACTTGACAAACA+AGG | + | chr8_4:19050306-19050325 | Msa1317600:CDS | 30.0% | |
| ! | GAAGAATTGATTCAATCTCT+TGG | + | chr8_4:19050399-19050418 | Msa1317600:CDS | 30.0% |
| ! | TCATGCTCTTCAAAAAGTTT+TGG | + | chr8_4:19050490-19050509 | Msa1317600:three_prime_UTR | 30.0% |
| AGTTATTAAGCGGGAAAATG+TGG | - | chr8_4:19047560-19047579 | None:intergenic | 35.0% | |
| GGGAAAATGAGATTATGTTG+TGG | - | chr8_4:19047599-19047618 | None:intergenic | 35.0% | |
| CCGGGAAAATTGAATTATGA+AGG | - | chr8_4:19047620-19047639 | None:intergenic | 35.0% | |
| ! | GAAAGCTTCGATTTTTCTGT+TGG | - | chr8_4:19047676-19047695 | None:intergenic | 35.0% |
| ! | ATTTTCGCGAATTAGGGATA+GGG | - | chr8_4:19047758-19047777 | None:intergenic | 35.0% |
| ! | AATTTTCGCGAATTAGGGAT+AGG | - | chr8_4:19047759-19047778 | None:intergenic | 35.0% |
| ! | TGTGGAATTTTCGCGAATTA+GGG | - | chr8_4:19047764-19047783 | None:intergenic | 35.0% |
| ! | TTGTGGAATTTTCGCGAATT+AGG | - | chr8_4:19047765-19047784 | None:intergenic | 35.0% |
| ! | TTGCATAGGGTTTGAAATTG+TGG | - | chr8_4:19047782-19047801 | None:intergenic | 35.0% |
| GAAGATTTCATGTGAAGTGA+AGG | + | chr8_4:19047833-19047852 | Msa1317600:CDS | 35.0% | |
| ! | ATGTGAAGTGAAGGATTTTG+CGG | + | chr8_4:19047842-19047861 | Msa1317600:CDS | 35.0% |
| !!! | GATTTTGCGGTTTTGGAATT+GGG | + | chr8_4:19047855-19047874 | Msa1317600:CDS | 35.0% |
| !!! | TTTTGGAATTGGGTTTGGAT+CGG | + | chr8_4:19047865-19047884 | Msa1317600:CDS | 35.0% |
| ! | GAAGCAGTATGGTCAATTTT+CGG | + | chr8_4:19047893-19047912 | Msa1317600:CDS | 35.0% |
| GTTATGCTATACGAACTTTG+AGG | + | chr8_4:19047988-19048007 | Msa1317600:CDS | 35.0% | |
| ATAGTCAAACTTGTCATGGA+AGG | + | chr8_4:19048524-19048543 | Msa1317600:intron | 35.0% | |
| GACTAACACGTTACATTTCA+AGG | - | chr8_4:19048729-19048748 | None:intergenic | 35.0% | |
| AATGACCAAAGTTAGTAGAG+GGG | - | chr8_4:19048759-19048778 | None:intergenic | 35.0% | |
| CTAATGACCAAAGTTAGTAG+AGG | - | chr8_4:19048761-19048780 | None:intergenic | 35.0% | |
| TGACGCGTTAAATGTTCATT+TGG | + | chr8_4:19048792-19048811 | Msa1317600:intron | 35.0% | |
| CCAACGACAACAATTAATAG+AGG | - | chr8_4:19048847-19048866 | None:intergenic | 35.0% | |
| CCTCTATTAATTGTTGTCGT+TGG | + | chr8_4:19048844-19048863 | Msa1317600:intron | 35.0% | |
| ATTTATATGTGGGAACCCAA+TGG | - | chr8_4:19048908-19048927 | None:intergenic | 35.0% | |
| ATTGGGTTCCCACATATAAA+TGG | + | chr8_4:19048907-19048926 | Msa1317600:intron | 35.0% | |
| ATTTGGGGAACTAATTGTGT+TGG | + | chr8_4:19048941-19048960 | Msa1317600:intron | 35.0% | |
| TTATCAATTAGCATGCCACA+TGG | + | chr8_4:19048982-19049001 | Msa1317600:intron | 35.0% | |
| TATCAATTAGCATGCCACAT+GGG | + | chr8_4:19048983-19049002 | Msa1317600:intron | 35.0% | |
| ! | ACCTATATTGGCTATCATGA+TGG | + | chr8_4:19049161-19049180 | Msa1317600:intron | 35.0% |
| TCCATCATGATAGCCAATAT+AGG | - | chr8_4:19049165-19049184 | None:intergenic | 35.0% | |
| GTCACCTTATATTATGCCAA+AGG | + | chr8_4:19049278-19049297 | Msa1317600:intron | 35.0% | |
| ACGACCTTTGGCATAATATA+AGG | - | chr8_4:19049285-19049304 | None:intergenic | 35.0% | |
| AATTTGGCTAGAGTGTATTG+AGG | + | chr8_4:19049366-19049385 | Msa1317600:intron | 35.0% | |
| AACAGGTCCTCTTATTACTT+TGG | - | chr8_4:19049408-19049427 | None:intergenic | 35.0% | |
| ! | GGACCTGTTACTCTTTTAAT+TGG | + | chr8_4:19049419-19049438 | Msa1317600:intron | 35.0% |
| ! | CCCCTCATTTTATATTTCAG+AGG | + | chr8_4:19049473-19049492 | Msa1317600:intron | 35.0% |
| AATTCATCCAGTTATGGGAT+GGG | - | chr8_4:19049572-19049591 | None:intergenic | 35.0% | |
| AAATTCATCCAGTTATGGGA+TGG | - | chr8_4:19049573-19049592 | None:intergenic | 35.0% | |
| ! | CGATTTAGAACCCACATATT+TGG | + | chr8_4:19049795-19049814 | Msa1317600:intron | 35.0% |
| TTAGAACCCACATATTTGGA+AGG | + | chr8_4:19049799-19049818 | Msa1317600:intron | 35.0% | |
| TAGAACCCACATATTTGGAA+GGG | + | chr8_4:19049800-19049819 | Msa1317600:intron | 35.0% | |
| ATATTTGGAAGGGATCAGTA+GGG | + | chr8_4:19049810-19049829 | Msa1317600:intron | 35.0% | |
| CACAAAAGAGATGTTATAGC+AGG | - | chr8_4:19050052-19050071 | None:intergenic | 35.0% | |
| CAGGGATGATATTGTATTGA+AGG | + | chr8_4:19050077-19050096 | Msa1317600:intron | 35.0% | |
| GATCCTCTGAATACGTTTAT+GGG | + | chr8_4:19050099-19050118 | Msa1317600:CDS | 35.0% | |
| ATACCCATAAACGTATTCAG+AGG | - | chr8_4:19050105-19050124 | None:intergenic | 35.0% | |
| GCCTGTTGAGAATGTAATTA+TGG | + | chr8_4:19050215-19050234 | Msa1317600:CDS | 35.0% | |
| AGAATGTAATTATGGTTCGC+TGG | + | chr8_4:19050223-19050242 | Msa1317600:CDS | 35.0% | |
| AAGGCAAGATTTACGAACAT+CGG | + | chr8_4:19050325-19050344 | Msa1317600:CDS | 35.0% | |
| !! | TTGCTTTTAACAAACCTCCT+AGG | + | chr8_4:19050358-19050377 | Msa1317600:CDS | 35.0% |
| ACTGACATCACTTTAAACCT+AGG | - | chr8_4:19050378-19050397 | None:intergenic | 35.0% | |
| ! | TAGGTTTAAAGTGATGTCAG+TGG | + | chr8_4:19050377-19050396 | Msa1317600:CDS | 35.0% |
| !! | TTTCAAAGTAAGTTGGTCCT+GGG | - | chr8_4:19050437-19050456 | None:intergenic | 35.0% |
| !! | ATTTCAAAGTAAGTTGGTCC+TGG | - | chr8_4:19050438-19050457 | None:intergenic | 35.0% |
| TCAACTAATTACAGCAGATC+AGG | - | chr8_4:19050641-19050660 | None:intergenic | 35.0% | |
| ! | AATGTGGATGGGTTTGGATT+AGG | - | chr8_4:19047544-19047563 | None:intergenic | 40.0% |
| TTAAGCGGGAAAATGTGGAT+GGG | - | chr8_4:19047555-19047574 | None:intergenic | 40.0% | |
| ATTAAGCGGGAAAATGTGGA+TGG | - | chr8_4:19047556-19047575 | None:intergenic | 40.0% | |
| !! | TAGGGTTTTGTGCGAATTGA+GGG | - | chr8_4:19047740-19047759 | None:intergenic | 40.0% |
| !! | ATAGGGTTTTGTGCGAATTG+AGG | - | chr8_4:19047741-19047760 | None:intergenic | 40.0% |
| ! | AGTGAAGGATTTTGCGGTTT+TGG | + | chr8_4:19047848-19047867 | Msa1317600:CDS | 40.0% |
| !!! | GGATTTTGCGGTTTTGGAAT+TGG | + | chr8_4:19047854-19047873 | Msa1317600:CDS | 40.0% |
| ! | GTATGGTCAATTTTCGGTTC+CGG | + | chr8_4:19047899-19047918 | Msa1317600:CDS | 40.0% |
| !! | TAATAGAGGGAGCATTAACG+TGG | - | chr8_4:19048833-19048852 | None:intergenic | 40.0% |
| CGCGACACATTAAATGAACA+CGG | + | chr8_4:19048876-19048895 | Msa1317600:intron | 40.0% | |
| ATCAATTAGCATGCCACATG+GGG | + | chr8_4:19048984-19049003 | Msa1317600:intron | 40.0% | |
| TAAACAAGCACAACGACCTT+TGG | - | chr8_4:19049297-19049316 | None:intergenic | 40.0% | |
| ! | TACTGTCCATTGGTTGAGTT+AGG | + | chr8_4:19049511-19049530 | Msa1317600:intron | 40.0% |
| ! | TTTGAGTTTATTGCAGCAGC+AGG | + | chr8_4:19049619-19049638 | Msa1317600:intron | 40.0% |
| TTGAGTTTATTGCAGCAGCA+GGG | + | chr8_4:19049620-19049639 | Msa1317600:intron | 40.0% | |
| ! | AAACAGCATTGAGCATGACA+AGG | - | chr8_4:19049771-19049790 | None:intergenic | 40.0% |
| CTGATCCCTTCCAAATATGT+GGG | - | chr8_4:19049808-19049827 | None:intergenic | 40.0% | |
| ACTGATCCCTTCCAAATATG+TGG | - | chr8_4:19049809-19049828 | None:intergenic | 40.0% | |
| CATATTTGGAAGGGATCAGT+AGG | + | chr8_4:19049809-19049828 | Msa1317600:intron | 40.0% | |
| TAGGGCCAAAGACATTCTTA+GGG | + | chr8_4:19049828-19049847 | Msa1317600:intron | 40.0% | |
| AAAGGCCCTAAGAATGTCTT+TGG | - | chr8_4:19049836-19049855 | None:intergenic | 40.0% | |
| ATTCTTAGGGCCTTTGTCTT+TGG | + | chr8_4:19049841-19049860 | Msa1317600:intron | 40.0% | |
| ACAAGCATGTCCAAAGACAA+AGG | - | chr8_4:19049854-19049873 | None:intergenic | 40.0% | |
| ATATTGGATGGAGTGGAAAG+AGG | - | chr8_4:19049899-19049918 | None:intergenic | 40.0% | |
| GGATCCTCTGAATACGTTTA+TGG | + | chr8_4:19050098-19050117 | Msa1317600:CDS | 40.0% | |
| !!! | TTTTGGAACCTTCGATTCCA+TGG | + | chr8_4:19050144-19050163 | Msa1317600:CDS | 40.0% |
| ATATCTTGCCATGGAATCGA+AGG | - | chr8_4:19050155-19050174 | None:intergenic | 40.0% | |
| GGATAGACATAAACAGTGTG+TGG | + | chr8_4:19050190-19050209 | Msa1317600:CDS | 40.0% | |
| TGTAATTATGGTTCGCTGGA+CGG | + | chr8_4:19050227-19050246 | Msa1317600:CDS | 40.0% | |
| AGGCAAGATTTACGAACATC+GGG | + | chr8_4:19050326-19050345 | Msa1317600:CDS | 40.0% | |
| GACATCACTTTAAACCTAGG+AGG | - | chr8_4:19050375-19050394 | None:intergenic | 40.0% | |
| !! | TTCAAAGTAAGTTGGTCCTG+GGG | - | chr8_4:19050436-19050455 | None:intergenic | 40.0% |
| TGAGGGGTAACGTGAATTTC+CGG | - | chr8_4:19047723-19047742 | None:intergenic | 45.0% | |
| !! | AGGGTTTTGTGCGAATTGAG+GGG | - | chr8_4:19047739-19047758 | None:intergenic | 45.0% |
| ACGCAATTGGGTCAAAGAAC+AGG | + | chr8_4:19047808-19047827 | Msa1317600:CDS | 45.0% | |
| CGCAATTGGGTCAAAGAACA+GGG | + | chr8_4:19047809-19047828 | Msa1317600:CDS | 45.0% | |
| !!! | TGCGGTTTTGGAATTGGGTT+TGG | + | chr8_4:19047860-19047879 | Msa1317600:CDS | 45.0% |
| GATTTCGAACCACTCTTCAC+CGG | - | chr8_4:19047921-19047940 | None:intergenic | 45.0% | |
| TGGTTCGAAATCGAGCAAAG+AGG | + | chr8_4:19047929-19047948 | Msa1317600:CDS | 45.0% | |
| ! | TGCTATACGAACTTTGAGGG+AGG | + | chr8_4:19047992-19048011 | Msa1317600:CDS | 45.0% |
| AATGGCCCCTCTACTAACTT+TGG | + | chr8_4:19048751-19048770 | Msa1317600:intron | 45.0% | |
| ! | TGTTCATTTGGCCTTCCATG+TGG | + | chr8_4:19048804-19048823 | Msa1317600:intron | 45.0% |
| TAACGTGGTATCCACATGGA+AGG | - | chr8_4:19048818-19048837 | None:intergenic | 45.0% | |
| GCATTAACGTGGTATCCACA+TGG | - | chr8_4:19048822-19048841 | None:intergenic | 45.0% | |
| ATATGTGGGAACCCAATGGA+AGG | - | chr8_4:19048904-19048923 | None:intergenic | 45.0% | |
| ! | CCATTGGTTGAGTTAGGCAA+CGG | + | chr8_4:19049517-19049536 | Msa1317600:intron | 45.0% |
| ! | CATTGGTTGAGTTAGGCAAC+GGG | + | chr8_4:19049518-19049537 | Msa1317600:intron | 45.0% |
| !! | TAGGCAACGGGTTGTTAGTT+AGG | + | chr8_4:19049530-19049549 | Msa1317600:intron | 45.0% |
| ! | ACGGGTTGTTAGTTAGGAGT+AGG | + | chr8_4:19049536-19049555 | Msa1317600:intron | 45.0% |
| AACTGTTCCCATCCCATAAC+TGG | + | chr8_4:19049562-19049581 | Msa1317600:intron | 45.0% | |
| TTTATTGCAGCAGCAGGGTA+GGG | + | chr8_4:19049625-19049644 | Msa1317600:intron | 45.0% | |
| AGAGAGAGGATGGGGAATTA+TGG | + | chr8_4:19049658-19049677 | Msa1317600:intron | 45.0% | |
| GAGAGAGGATGGGGAATTAT+GGG | + | chr8_4:19049659-19049678 | Msa1317600:intron | 45.0% | |
| AGAGAGGATGGGGAATTATG+GGG | + | chr8_4:19049660-19049679 | Msa1317600:intron | 45.0% | |
| GTAGGGCCAAAGACATTCTT+AGG | + | chr8_4:19049827-19049846 | Msa1317600:intron | 45.0% | |
| !!! | TGCTTGTTTTGCAGAGCTTC+AGG | + | chr8_4:19049867-19049886 | Msa1317600:intron | 45.0% |
| ! | CGGGAAAATGTGGATGGGTT+TGG | - | chr8_4:19047550-19047569 | None:intergenic | 50.0% |
| GACTCTTCTAGTACACTCCC+CGG | + | chr8_4:19047701-19047720 | Msa1317600:CDS | 50.0% | |
| AGGGGTAACGTGAATTTCCG+GGG | - | chr8_4:19047721-19047740 | None:intergenic | 50.0% | |
| GAGGGGTAACGTGAATTTCC+GGG | - | chr8_4:19047722-19047741 | None:intergenic | 50.0% | |
| GATCGGAACGTGAAGCAGTA+TGG | + | chr8_4:19047882-19047901 | Msa1317600:CDS | 50.0% | |
| ! | TTTTCGGTTCCGGTGAAGAG+TGG | + | chr8_4:19047909-19047928 | Msa1317600:CDS | 50.0% |
| ATGAACACGGAGCCTTCCAT+TGG | + | chr8_4:19048889-19048908 | Msa1317600:intron | 50.0% | |
| TGAACACGGAGCCTTCCATT+GGG | + | chr8_4:19048890-19048909 | Msa1317600:intron | 50.0% | |
| !! | TGCCACATGGGGTATTGAAG+TGG | + | chr8_4:19048995-19049014 | Msa1317600:intron | 50.0% |
| !! | GCCACATGGGGTATTGAAGT+GGG | + | chr8_4:19048996-19049015 | Msa1317600:intron | 50.0% |
| CCGTTGCCTAACTCAACCAA+TGG | - | chr8_4:19049520-19049539 | None:intergenic | 50.0% | |
| GTTTATTGCAGCAGCAGGGT+AGG | + | chr8_4:19049624-19049643 | Msa1317600:intron | 50.0% | |
| AGGGGTAGAAAGAGAGAGGA+TGG | + | chr8_4:19049648-19049667 | Msa1317600:intron | 50.0% | |
| GGGGTAGAAAGAGAGAGGAT+GGG | + | chr8_4:19049649-19049668 | Msa1317600:intron | 50.0% | |
| GGGTAGAAAGAGAGAGGATG+GGG | + | chr8_4:19049650-19049669 | Msa1317600:intron | 50.0% | |
| GAGAGGATGGGGAATTATGG+GGG | + | chr8_4:19049661-19049680 | Msa1317600:intron | 50.0% | |
| GAATGCAAAGAGGATCAGCG+AGG | + | chr8_4:19049732-19049751 | Msa1317600:intron | 50.0% | |
| GATGGAGTGGAAAGAGGCTT+AGG | - | chr8_4:19049893-19049912 | None:intergenic | 50.0% | |
| AGGTTCCATCAAACCTACCG+CGG | - | chr8_4:19050284-19050303 | None:intergenic | 50.0% | |
| GCCCACTTCAATACCCCATG+TGG | - | chr8_4:19049000-19049019 | None:intergenic | 55.0% | |
| AGGGAGGGGTAGAAAGAGAG+AGG | + | chr8_4:19049644-19049663 | Msa1317600:intron | 55.0% | |
| !! | AGGATCAGCGAGGCATTGCA+TGG | + | chr8_4:19049742-19049761 | Msa1317600:intron | 55.0% |
| ATGGTTCGCTGGACGGTTCA+CGG | + | chr8_4:19050234-19050253 | Msa1317600:CDS | 55.0% | |
| GGCTTTCCCATGGAACTCGT+GGG | - | chr8_4:19050263-19050282 | None:intergenic | 55.0% | |
| GAAAGCCGCGGTAGGTTTGA+TGG | + | chr8_4:19050276-19050295 | Msa1317600:CDS | 55.0% | |
| !! | TAAGTTGGTCCTGGGGTCTG+CGG | - | chr8_4:19050429-19050448 | None:intergenic | 55.0% |
| ATTGCAGCAGCAGGGTAGGG+AGG | + | chr8_4:19049628-19049647 | Msa1317600:intron | 60.0% | |
| TTGCAGCAGCAGGGTAGGGA+GGG | + | chr8_4:19049629-19049648 | Msa1317600:intron | 60.0% | |
| TGGTTCGCTGGACGGTTCAC+GGG | + | chr8_4:19050235-19050254 | Msa1317600:CDS | 60.0% | |
| ACGGGATCCCACGAGTTCCA+TGG | + | chr8_4:19050253-19050272 | Msa1317600:CDS | 60.0% | |
| CGGGATCCCACGAGTTCCAT+GGG | + | chr8_4:19050254-19050273 | Msa1317600:CDS | 60.0% | |
| CGGCTTTCCCATGGAACTCG+TGG | - | chr8_4:19050264-19050283 | None:intergenic | 60.0% | |
| CGAGTTCCATGGGAAAGCCG+CGG | + | chr8_4:19050264-19050283 | Msa1317600:CDS | 60.0% | |
| TTCCATGGGAAAGCCGCGGT+AGG | + | chr8_4:19050268-19050287 | Msa1317600:CDS | 60.0% | |
| AACCTACCGCGGCTTTCCCA+TGG | - | chr8_4:19050273-19050292 | None:intergenic | 60.0% | |
| TGCAGCAGCAGGGTAGGGAG+GGG | + | chr8_4:19049630-19049649 | Msa1317600:intron | 65.0% | |
| CTTGGCTGTCCGCAGACCCC+AGG | + | chr8_4:19050417-19050436 | Msa1317600:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 19047497 | 19050714 | 19047497 | ID=Msa1317600;Name=Msa1317600 |
| chr8_4 | mRNA | 19047497 | 19050714 | 19047497 | ID=Msa1317600-mRNA-1;Parent=Msa1317600;Name=Msa1317600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=202|1|1|1|1|1|2|232|254 |
| chr8_4 | exon | 19047497 | 19048060 | 19047497 | ID=Msa1317600-mRNA-1:exon:7003;Parent=Msa1317600-mRNA-1 |
| chr8_4 | exon | 19050080 | 19050714 | 19050080 | ID=Msa1317600-mRNA-1:exon:7004;Parent=Msa1317600-mRNA-1 |
| chr8_4 | five_prime_UTR | 19047497 | 19047698 | 19047497 | ID=Msa1317600-mRNA-1:five_prime_utr;Parent=Msa1317600-mRNA-1 |
| chr8_4 | CDS | 19047699 | 19048060 | 19047699 | ID=Msa1317600-mRNA-1:cds;Parent=Msa1317600-mRNA-1 |
| chr8_4 | CDS | 19050080 | 19050482 | 19050080 | ID=Msa1317600-mRNA-1:cds;Parent=Msa1317600-mRNA-1 |
| chr8_4 | three_prime_UTR | 19050483 | 19050714 | 19050483 | ID=Msa1317600-mRNA-1:three_prime_utr;Parent=Msa1317600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
