AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0984000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0984000 MtrunA17_Chr1g0164721 96.226 477 18 0 1 477 1 477 0.0 940
Msa0984000 MtrunA17_Chr2g0319981 32.432 222 139 4 51 270 53 265 5.17e-30 119
Msa0984000 MtrunA17_Chr4g0041461 33.621 232 128 6 37 253 29 249 9.12e-29 116
Msa0984000 MtrunA17_Chr1g0164711 52.113 71 28 2 139 208 2 67 1.12e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0984000 AT5G23240.1 52.414 435 183 7 53 475 37 459 2.15e-155 450
Msa0984000 AT2G42750.1 31.944 216 136 4 57 270 65 271 1.93e-28 115

Find 92 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGGATGAATGGAATTTA+TGG 0.158588 6_4:-27644265 None:intergenic
AGTAACAGTAGACATGTTTA+TGG 0.187537 6_4:-27641525 None:intergenic
CTGACATTCTTGATTCTCTT+TGG 0.194662 6_4:-27644062 None:intergenic
TTTGCTATAGAATCAGTTTA+TGG 0.202414 6_4:+27642902 Msa0984000:CDS
TTTGACTTGTATGATCTTCT+AGG 0.212676 6_4:+27641677 Msa0984000:CDS
CAATTTCCAACTGGTTATAT+TGG 0.229177 6_4:+27644103 Msa0984000:CDS
CCTGATATTGCTGGTCCTTC+TGG 0.231877 6_4:+27641767 Msa0984000:CDS
TCTCTTAGCTTACTAAGATT+TGG 0.253936 6_4:-27644189 None:intergenic
ACTGGCAATCCCCGTCTAAT+TGG 0.257361 6_4:-27644429 None:intergenic
CCATTCATCCTGAGGAATAT+TGG 0.276497 6_4:+27644274 Msa0984000:CDS
GAGATCCAACCTTGCTGCTT+TGG 0.303926 6_4:+27643236 Msa0984000:CDS
TTGGTGCCAGTTGCACAATT+TGG 0.317679 6_4:-27644129 None:intergenic
CCAGTGGTTACTTCATTGTT+TGG 0.318448 6_4:+27644447 Msa0984000:CDS
CTCTTGGTTGCAATATATAT+TGG 0.333927 6_4:+27644563 Msa0984000:CDS
TTGGGGAGGTTCTCTAGCTT+TGG 0.348620 6_4:+27644527 Msa0984000:CDS
TGATGCTTATGCCATTCTTT+CGG 0.378520 6_4:+27641814 Msa0984000:CDS
CCAGAAGGACCAGCAATATC+AGG 0.385817 6_4:-27641767 None:intergenic
TGGTCCTTCTGGTCATGATA+TGG 0.387346 6_4:+27641778 Msa0984000:CDS
GATACATGTAATATAAAGTT+AGG 0.391057 6_4:+27644704 Msa0984000:three_prime_UTR
TTCATTCACCTGAGAATACT+TGG 0.395135 6_4:-27643394 None:intergenic
TCAGGATGAATGGAATTTAT+GGG 0.397759 6_4:-27644264 None:intergenic
GCAAATGTAGCCTTCTCAAT+TGG 0.398006 6_4:-27644348 None:intergenic
AAATTAATTAACCTTATCAT+AGG 0.400387 6_4:-27641855 None:intergenic
TGGAAATCGTTAACAGCTCT+TGG 0.411043 6_4:+27644547 Msa0984000:CDS
AGTTGAGTTGAAAGAGCATT+GGG 0.412413 6_4:+27644509 Msa0984000:CDS
CGATGTCATCCTGATATTGC+TGG 0.415641 6_4:+27641758 Msa0984000:CDS
TGGCAACCAAATTGTGCAAC+TGG 0.415840 6_4:+27644123 Msa0984000:CDS
TTTCTCTACTCTTACATGTA+AGG 0.416623 6_4:+27641619 Msa0984000:CDS
GAAGACCATTGTATTCAGTT+TGG 0.420412 6_4:+27642789 Msa0984000:CDS
ACATTCTTGATTCTCTTTGG+AGG 0.428803 6_4:-27644059 None:intergenic
ACAGAATTCAAAGGCTTCAC+TGG 0.429274 6_4:+27642767 Msa0984000:CDS
GAAGGAAGAACAACAGTTGA+TGG 0.432900 6_4:-27644300 None:intergenic
TCGATTTCTATTTCCAATGT+TGG 0.441877 6_4:-27644634 None:intergenic
GGTTACTTCATTGTTTGGTA+TGG 0.442830 6_4:+27644452 Msa0984000:CDS
CCAATATTCCTCAGGATGAA+TGG 0.445444 6_4:-27644274 None:intergenic
TCATAGGCAAAACGAGCAAA+TGG 0.458278 6_4:-27641839 None:intergenic
TGAAAATAGTCCAATTAGAC+GGG 0.464684 6_4:+27644419 Msa0984000:CDS
CAATAAGATCAATTTCCAAC+TGG 0.475149 6_4:+27644094 Msa0984000:CDS
GCAGCTACATGGTATGTGAT+TGG 0.477504 6_4:+27644588 Msa0984000:CDS
TTGAATTGCCTCATCAATTG+TGG 0.477513 6_4:-27642963 None:intergenic
GAGAAGGCTACATTTGCTAA+AGG 0.480645 6_4:+27644354 Msa0984000:CDS
AAGGGTTGCTGTAGAATTTG+TGG 0.483426 6_4:+27644611 Msa0984000:CDS
TGAATTGCCTCATCAATTGT+GGG 0.486266 6_4:-27642962 None:intergenic
AGCTTACTAAGATTTGGATC+AGG 0.486859 6_4:-27644183 None:intergenic
AGCAAATGGATCCGAAAGAA+TGG 0.495584 6_4:-27641825 None:intergenic
TGTTTGGTATGGCTGCAGTT+AGG 0.496837 6_4:+27644463 Msa0984000:CDS
GAACTCCAAAGCAGCAAGGT+TGG 0.505248 6_4:-27643241 None:intergenic
CTCAAACATATTTGTAGATG+TGG 0.509300 6_4:+27643329 Msa0984000:CDS
CAGTTGAGTTGAAAGAGCAT+TGG 0.510120 6_4:+27644508 Msa0984000:CDS
ATGAAAATAGTCCAATTAGA+CGG 0.517165 6_4:+27644418 Msa0984000:CDS
GTAGTAGTACTAGTTGAAGA+AGG 0.518499 6_4:-27644318 None:intergenic
ATGGTTTGAGTTTGAGAACA+AGG 0.519969 6_4:-27641506 None:intergenic
GTTGATGAAATAAAATGTGT+TGG 0.520242 6_4:+27642845 Msa0984000:CDS
AGCAAGGGTTGTTTCTCAGT+GGG 0.533941 6_4:+27642928 Msa0984000:CDS
AAAAGCTACCAAGTATTCTC+AGG 0.534346 6_4:+27643386 Msa0984000:CDS
GATGGAGTCCAATATTCCTC+AGG 0.534720 6_4:-27644282 None:intergenic
CTACATGGTATGTGATTGGA+AGG 0.538431 6_4:+27644592 Msa0984000:CDS
GTAGGTGCAAGTCATACAGC+AGG 0.546276 6_4:+27643297 Msa0984000:CDS
CAGGATGACATCGTTTCTGA+AGG 0.548079 6_4:-27641748 None:intergenic
GTAGAATTTGTGGCCAACAT+TGG 0.550242 6_4:+27644621 Msa0984000:CDS
CAGGATGAATGGAATTTATG+GGG 0.557366 6_4:-27644263 None:intergenic
ACTTACGAAATGCAGTTGAC+AGG 0.558378 6_4:-27642992 None:intergenic
ATCAGTTTATGGAAGAGCAA+GGG 0.573227 6_4:+27642913 Msa0984000:CDS
AATCAGTTTATGGAAGAGCA+AGG 0.576566 6_4:+27642912 Msa0984000:CDS
ATATATTGGTAGCAGCTACA+TGG 0.581246 6_4:+27644577 Msa0984000:CDS
CCATTGTATTCAGTTTGGTG+TGG 0.590749 6_4:+27642794 Msa0984000:CDS
ACATATTTGTAGATGTGGAG+AGG 0.591397 6_4:+27643334 Msa0984000:CDS
CCACGTGGCAATGTAAGAGT+AGG 0.594070 6_4:+27643279 Msa0984000:CDS
GCAGTTAGGTTACATGAAGT+AGG 0.596129 6_4:+27644477 Msa0984000:CDS
GCAAAGATCACAGAATTCAA+AGG 0.599426 6_4:+27642758 Msa0984000:CDS
TACTACTGCACCAATTGAGA+AGG 0.603819 6_4:+27644338 Msa0984000:CDS
CATAAATTCCATTCATCCTG+AGG 0.607786 6_4:+27644266 Msa0984000:CDS
GAACAAGGTGTGGCAGCAAG+AGG 0.611745 6_4:-27641491 None:intergenic
CCAAACAATGAAGTAACCAC+TGG 0.612811 6_4:-27644447 None:intergenic
TGGTTGCCAATATAACCAGT+TGG 0.615251 6_4:-27644109 None:intergenic
AGGATGACATCGTTTCTGAA+GGG 0.617366 6_4:-27641747 None:intergenic
AATTAGACGGGGATTGCCAG+TGG 0.621632 6_4:+27644431 Msa0984000:CDS
GAGCAAGGGTTGTTTCTCAG+TGG 0.633189 6_4:+27642927 Msa0984000:CDS
AGGATGAATGGAATTTATGG+GGG 0.638502 6_4:-27644262 None:intergenic
GAGTTGAAAGAGCATTGGGG+AGG 0.639356 6_4:+27644513 Msa0984000:CDS
TTCTGAACCCACAATTGATG+AGG 0.640325 6_4:+27642955 Msa0984000:CDS
ATAGCCATATCATGACCAGA+AGG 0.649543 6_4:-27641782 None:intergenic
TCAAGAACTCCAAAGCAGCA+AGG 0.655263 6_4:-27643245 None:intergenic
TGATCAGTCACAGATTAAGA+CGG 0.667093 6_4:+27641715 Msa0984000:CDS
CCACACCAAACTGAATACAA+TGG 0.683154 6_4:-27642794 None:intergenic
ATACAAGTCAAAATCCAACA+TGG 0.696805 6_4:-27641666 None:intergenic
GTTGAGTTGAAAGAGCATTG+GGG 0.697316 6_4:+27644510 Msa0984000:CDS
TTGAGTTTGAGAACAAGGTG+TGG 0.700536 6_4:-27641501 None:intergenic
GAAAATAGTCCAATTAGACG+GGG 0.710030 6_4:+27644420 Msa0984000:CDS
TTGATGTCGAAGCAGCCACG+TGG 0.734249 6_4:+27643264 Msa0984000:CDS
CCTACTCTTACATTGCCACG+TGG 0.735405 6_4:-27643279 None:intergenic
TACATGGTATGTGATTGGAA+GGG 0.767981 6_4:+27644593 Msa0984000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATAAACTAAAAAGAA+AGG - chr6_4:27641890-27641909 None:intergenic 10.0%
!!! TTTTTAGTTTATTATAATTG+TGG + chr6_4:27641893-27641912 Msa0984000:intron 10.0%
!! TTTATAACAAAATAACATTA+TGG + chr6_4:27642503-27642522 Msa0984000:intron 10.0%
!! AAATTAATTAACCTTATCAT+AGG - chr6_4:27641858-27641877 None:intergenic 15.0%
!!! CAATTTATAGTTCTAAATTA+AGG + chr6_4:27641975-27641994 Msa0984000:intron 15.0%
!!! GTTTCTATTTTAAGATTATA+AGG + chr6_4:27642309-27642328 Msa0984000:intron 15.0%
!! AAAACAAATAAGAATTCAAT+TGG - chr6_4:27642694-27642713 None:intergenic 15.0%
!!! ATTGAATTCTTATTTGTTTT+TGG + chr6_4:27642694-27642713 Msa0984000:intron 15.0%
!! AATTATTCAATGAATATACA+AGG - chr6_4:27643151-27643170 None:intergenic 15.0%
!! TTTGTATAATGATATCTGAT+TGG - chr6_4:27642480-27642499 None:intergenic 20.0%
!! TTGTAACTAAGAATTAAGAT+TGG + chr6_4:27642647-27642666 Msa0984000:intron 20.0%
!!! ATTCTTATTTGTTTTTGGTT+TGG + chr6_4:27642699-27642718 Msa0984000:intron 20.0%
!!! ATTGATTTTAGTATGTTTGA+AGG + chr6_4:27643466-27643485 Msa0984000:intron 20.0%
!! TATGAAGACTTATCATATAA+GGG + chr6_4:27643743-27643762 Msa0984000:intron 20.0%
!! GATACATGTAATATAAAGTT+AGG + chr6_4:27644704-27644723 Msa0984000:three_prime_UTR 20.0%
!!! TAGAAAAACAAGACTTGTTT+TGG - chr6_4:27641592-27641611 None:intergenic 25.0%
!!! GATTTTAGCAAAATCAATTC+TGG - chr6_4:27642122-27642141 None:intergenic 25.0%
! CAGTAAAATACAAGTAAACA+CGG - chr6_4:27642200-27642219 None:intergenic 25.0%
!! ACTTAACAAAAGCACAAATT+TGG - chr6_4:27642271-27642290 None:intergenic 25.0%
! ACAAATAAGAATTCAATTGG+AGG - chr6_4:27642691-27642710 None:intergenic 25.0%
!! GTTGATGAAATAAAATGTGT+TGG + chr6_4:27642845-27642864 Msa0984000:CDS 25.0%
!! TTTGCTATAGAATCAGTTTA+TGG + chr6_4:27642902-27642921 Msa0984000:CDS 25.0%
! TGTATAAACTATTCTGTACT+TGG + chr6_4:27643028-27643047 Msa0984000:intron 25.0%
!!! GAATTTTTGGATTCACTTTT+TGG + chr6_4:27643414-27643433 Msa0984000:intron 25.0%
! AAAGTGAGTTTATAGTGAAA+TGG - chr6_4:27643644-27643663 None:intergenic 25.0%
!! TTAAGTTGTTTATCGAACAA+AGG - chr6_4:27643709-27643728 None:intergenic 25.0%
! GTATGAAGACTTATCATATA+AGG + chr6_4:27643742-27643761 Msa0984000:intron 25.0%
! TTCATATAAGCTATAAACTG+TGG + chr6_4:27643814-27643833 Msa0984000:intron 25.0%
! AATTTATCCTAAAGAGCTTA+TGG + chr6_4:27643841-27643860 Msa0984000:intron 25.0%
! ATTATTTCCATAAGCTCTTT+AGG - chr6_4:27643851-27643870 None:intergenic 25.0%
! TAATTCACAGTGAAATAATG+AGG - chr6_4:27644009-27644028 None:intergenic 25.0%
! ATGAAAATAGTCCAATTAGA+CGG + chr6_4:27644418-27644437 Msa0984000:CDS 25.0%
AGTAACAGTAGACATGTTTA+TGG - chr6_4:27641528-27641547 None:intergenic 30.0%
!! TTTTGGAAATTTGAGGGTTT+TGG - chr6_4:27641575-27641594 None:intergenic 30.0%
!!! GACTTGTTTTGGAAATTTGA+GGG - chr6_4:27641581-27641600 None:intergenic 30.0%
!!! AGACTTGTTTTGGAAATTTG+AGG - chr6_4:27641582-27641601 None:intergenic 30.0%
TTTCTCTACTCTTACATGTA+AGG + chr6_4:27641619-27641638 Msa0984000:CDS 30.0%
ATACAAGTCAAAATCCAACA+TGG - chr6_4:27641669-27641688 None:intergenic 30.0%
!! TTTGACTTGTATGATCTTCT+AGG + chr6_4:27641677-27641696 Msa0984000:CDS 30.0%
TCTATTACTCATGTCATGTA+TGG + chr6_4:27641933-27641952 Msa0984000:intron 30.0%
!!! GTTTTAAAATTCTATGTCGC+TGG + chr6_4:27642029-27642048 Msa0984000:intron 30.0%
! GATCTCATAGGATTTTTGTA+TGG + chr6_4:27642154-27642173 Msa0984000:intron 30.0%
! CAGATTAAAGCTGTAGTTTT+AGG + chr6_4:27642411-27642430 Msa0984000:intron 30.0%
!! TCAGATGGATTGATTTAACA+AGG + chr6_4:27642562-27642581 Msa0984000:intron 30.0%
GCTTATAGTATGACAAAATG+TGG + chr6_4:27642724-27642743 Msa0984000:intron 30.0%
CTCAAACATATTTGTAGATG+TGG + chr6_4:27643329-27643348 Msa0984000:CDS 30.0%
! TTCTCAGGTGAATGAATTTT+TGG + chr6_4:27643401-27643420 Msa0984000:intron 30.0%
TGAAGGCAAGAGATTAAAAT+TGG + chr6_4:27643483-27643502 Msa0984000:intron 30.0%
TCAAGTTAGAATCAACTCTA+CGG - chr6_4:27643514-27643533 None:intergenic 30.0%
AAAACACATTCGAACTTTGA+TGG - chr6_4:27643560-27643579 None:intergenic 30.0%
TATTGTTCAACTCACTTTCA+CGG + chr6_4:27643593-27643612 Msa0984000:intron 30.0%
TAACTCAATCACTTTCACAT+TGG + chr6_4:27643664-27643683 Msa0984000:intron 30.0%
AAACATTTGTGAGACTGTAT+GGG - chr6_4:27643923-27643942 None:intergenic 30.0%
TAAACATTTGTGAGACTGTA+TGG - chr6_4:27643924-27643943 None:intergenic 30.0%
!! ATTCGTGCTTTGAAGATTAA+GGG - chr6_4:27643985-27644004 None:intergenic 30.0%
!! AATTCGTGCTTTGAAGATTA+AGG - chr6_4:27643986-27644005 None:intergenic 30.0%
! ACAAAAGAAGATCTCTTTTC+AGG + chr6_4:27644029-27644048 Msa0984000:intron 30.0%
CAATAAGATCAATTTCCAAC+TGG + chr6_4:27644094-27644113 Msa0984000:CDS 30.0%
CAATTTCCAACTGGTTATAT+TGG + chr6_4:27644103-27644122 Msa0984000:CDS 30.0%
TCTCTTAGCTTACTAAGATT+TGG - chr6_4:27644192-27644211 None:intergenic 30.0%
!! ATTTATGGGGGTTTTATGTT+TGG - chr6_4:27644253-27644272 None:intergenic 30.0%
TCAGGATGAATGGAATTTAT+GGG - chr6_4:27644267-27644286 None:intergenic 30.0%
TGAAAATAGTCCAATTAGAC+GGG + chr6_4:27644419-27644438 Msa0984000:CDS 30.0%
CTCTTGGTTGCAATATATAT+TGG + chr6_4:27644563-27644582 Msa0984000:CDS 30.0%
TCGATTTCTATTTCCAATGT+TGG - chr6_4:27644637-27644656 None:intergenic 30.0%
! ATGGTTTGAGTTTGAGAACA+AGG - chr6_4:27641509-27641528 None:intergenic 35.0%
!! AAGTTTTTCAGCATCCATGT+TGG + chr6_4:27641652-27641671 Msa0984000:CDS 35.0%
TGATCAGTCACAGATTAAGA+CGG + chr6_4:27641715-27641734 Msa0984000:CDS 35.0%
TGATGCTTATGCCATTCTTT+CGG + chr6_4:27641814-27641833 Msa0984000:CDS 35.0%
AAGGTATGCAACTTCAATTG+CGG + chr6_4:27641994-27642013 Msa0984000:intron 35.0%
TGTATGAGAGTAGTGTTAAG+AGG + chr6_4:27642363-27642382 Msa0984000:intron 35.0%
TGTAGAAGAGTCTATTCAGA+TGG + chr6_4:27642547-27642566 Msa0984000:intron 35.0%
ATGACTCAAATCCAAGACAT+CGG + chr6_4:27642596-27642615 Msa0984000:intron 35.0%
GCAAAGATCACAGAATTCAA+AGG + chr6_4:27642758-27642777 Msa0984000:CDS 35.0%
GAAGACCATTGTATTCAGTT+TGG + chr6_4:27642789-27642808 Msa0984000:CDS 35.0%
! CAGCTAACAAAGCACATTTT+AGG - chr6_4:27642874-27642893 None:intergenic 35.0%
AATCAGTTTATGGAAGAGCA+AGG + chr6_4:27642912-27642931 Msa0984000:CDS 35.0%
ATCAGTTTATGGAAGAGCAA+GGG + chr6_4:27642913-27642932 Msa0984000:CDS 35.0%
TGAATTGCCTCATCAATTGT+GGG - chr6_4:27642965-27642984 None:intergenic 35.0%
TTGAATTGCCTCATCAATTG+TGG - chr6_4:27642966-27642985 None:intergenic 35.0%
CTGAGAGTTGCAATCAAATA+CGG + chr6_4:27643081-27643100 Msa0984000:intron 35.0%
ACATATTTGTAGATGTGGAG+AGG + chr6_4:27643334-27643353 Msa0984000:CDS 35.0%
AAAAGCTACCAAGTATTCTC+AGG + chr6_4:27643386-27643405 Msa0984000:CDS 35.0%
TTCATTCACCTGAGAATACT+TGG - chr6_4:27643397-27643416 None:intergenic 35.0%
CAAGTTAGAATCAACTCTAC+GGG - chr6_4:27643513-27643532 None:intergenic 35.0%
AAAGGCTAAGCATAAAAGAG+TGG - chr6_4:27643691-27643710 None:intergenic 35.0%
ACATTCTTGATTCTCTTTGG+AGG - chr6_4:27644062-27644081 None:intergenic 35.0%
CTGACATTCTTGATTCTCTT+TGG - chr6_4:27644065-27644084 None:intergenic 35.0%
AGCTTACTAAGATTTGGATC+AGG - chr6_4:27644186-27644205 None:intergenic 35.0%
AGGATGAATGGAATTTATGG+GGG - chr6_4:27644265-27644284 None:intergenic 35.0%
CAGGATGAATGGAATTTATG+GGG - chr6_4:27644266-27644285 None:intergenic 35.0%
CTCAGGATGAATGGAATTTA+TGG - chr6_4:27644268-27644287 None:intergenic 35.0%
CATAAATTCCATTCATCCTG+AGG + chr6_4:27644266-27644285 Msa0984000:CDS 35.0%
GTAGTAGTACTAGTTGAAGA+AGG - chr6_4:27644321-27644340 None:intergenic 35.0%
GAAAATAGTCCAATTAGACG+GGG + chr6_4:27644420-27644439 Msa0984000:CDS 35.0%
GGTTACTTCATTGTTTGGTA+TGG + chr6_4:27644452-27644471 Msa0984000:CDS 35.0%
!! AGTTGAGTTGAAAGAGCATT+GGG + chr6_4:27644509-27644528 Msa0984000:CDS 35.0%
! ATATATTGGTAGCAGCTACA+TGG + chr6_4:27644577-27644596 Msa0984000:CDS 35.0%
TACATGGTATGTGATTGGAA+GGG + chr6_4:27644593-27644612 Msa0984000:CDS 35.0%
TTGAGTTTGAGAACAAGGTG+TGG - chr6_4:27641504-27641523 None:intergenic 40.0%
AGGATGACATCGTTTCTGAA+GGG - chr6_4:27641750-27641769 None:intergenic 40.0%
ATAGCCATATCATGACCAGA+AGG - chr6_4:27641785-27641804 None:intergenic 40.0%
AGCAAATGGATCCGAAAGAA+TGG - chr6_4:27641828-27641847 None:intergenic 40.0%
TCATAGGCAAAACGAGCAAA+TGG - chr6_4:27641842-27641861 None:intergenic 40.0%
! TGCTCGTTTTGCCTATGATA+AGG + chr6_4:27641844-27641863 Msa0984000:CDS 40.0%
AATCAATTCTGGACGCACAA+GGG - chr6_4:27642111-27642130 None:intergenic 40.0%
AAATCAATTCTGGACGCACA+AGG - chr6_4:27642112-27642131 None:intergenic 40.0%
GTGAGATTGTACGATCTCAT+AGG + chr6_4:27642142-27642161 Msa0984000:intron 40.0%
TCATCTCTTAACCGATGTCT+TGG - chr6_4:27642610-27642629 None:intergenic 40.0%
AGTATGACAAAATGTGGTGC+AGG + chr6_4:27642730-27642749 Msa0984000:intron 40.0%
ACAGAATTCAAAGGCTTCAC+TGG + chr6_4:27642767-27642786 Msa0984000:CDS 40.0%
CCACACCAAACTGAATACAA+TGG - chr6_4:27642797-27642816 None:intergenic 40.0%
! CCATTGTATTCAGTTTGGTG+TGG + chr6_4:27642794-27642813 Msa0984000:CDS 40.0%
TTCTGAACCCACAATTGATG+AGG + chr6_4:27642955-27642974 Msa0984000:CDS 40.0%
ACTTACGAAATGCAGTTGAC+AGG - chr6_4:27642995-27643014 None:intergenic 40.0%
!! TTGAAGATTAAGGGCTGGTT+TGG - chr6_4:27643976-27643995 None:intergenic 40.0%
TGGTTGCCAATATAACCAGT+TGG - chr6_4:27644112-27644131 None:intergenic 40.0%
! CGCAACTTTTGTCATGCTTT+TGG - chr6_4:27644151-27644170 None:intergenic 40.0%
CCAATATTCCTCAGGATGAA+TGG - chr6_4:27644277-27644296 None:intergenic 40.0%
CCATTCATCCTGAGGAATAT+TGG + chr6_4:27644274-27644293 Msa0984000:CDS 40.0%
GAAGGAAGAACAACAGTTGA+TGG - chr6_4:27644303-27644322 None:intergenic 40.0%
TACTACTGCACCAATTGAGA+AGG + chr6_4:27644338-27644357 Msa0984000:CDS 40.0%
GCAAATGTAGCCTTCTCAAT+TGG - chr6_4:27644351-27644370 None:intergenic 40.0%
! GAGAAGGCTACATTTGCTAA+AGG + chr6_4:27644354-27644373 Msa0984000:CDS 40.0%
CCAAACAATGAAGTAACCAC+TGG - chr6_4:27644450-27644469 None:intergenic 40.0%
CCAGTGGTTACTTCATTGTT+TGG + chr6_4:27644447-27644466 Msa0984000:CDS 40.0%
GCAGTTAGGTTACATGAAGT+AGG + chr6_4:27644477-27644496 Msa0984000:CDS 40.0%
!! CAGTTGAGTTGAAAGAGCAT+TGG + chr6_4:27644508-27644527 Msa0984000:CDS 40.0%
!! GTTGAGTTGAAAGAGCATTG+GGG + chr6_4:27644510-27644529 Msa0984000:CDS 40.0%
TGGAAATCGTTAACAGCTCT+TGG + chr6_4:27644547-27644566 Msa0984000:CDS 40.0%
CTACATGGTATGTGATTGGA+AGG + chr6_4:27644592-27644611 Msa0984000:CDS 40.0%
AAGGGTTGCTGTAGAATTTG+TGG + chr6_4:27644611-27644630 Msa0984000:CDS 40.0%
GTAGAATTTGTGGCCAACAT+TGG + chr6_4:27644621-27644640 Msa0984000:CDS 40.0%
!!! GAGGGTTTTGGAGTGAAGAA+AGG - chr6_4:27641563-27641582 None:intergenic 45.0%
CAGGATGACATCGTTTCTGA+AGG - chr6_4:27641751-27641770 None:intergenic 45.0%
CGATGTCATCCTGATATTGC+TGG + chr6_4:27641758-27641777 Msa0984000:CDS 45.0%
TGGTCCTTCTGGTCATGATA+TGG + chr6_4:27641778-27641797 Msa0984000:CDS 45.0%
! ATTCTATGTCGCTGGTGTCA+AGG + chr6_4:27642037-27642056 Msa0984000:intron 45.0%
ATCAATTCTGGACGCACAAG+GGG - chr6_4:27642110-27642129 None:intergenic 45.0%
!! AGCAAGGGTTGTTTCTCAGT+GGG + chr6_4:27642928-27642947 Msa0984000:CDS 45.0%
TGTCTATGCGACAGCAATTG+AGG - chr6_4:27643107-27643126 None:intergenic 45.0%
TCAAGAACTCCAAAGCAGCA+AGG - chr6_4:27643248-27643267 None:intergenic 45.0%
!! GTGCTTTGAAGATTAAGGGC+TGG - chr6_4:27643981-27644000 None:intergenic 45.0%
TGGCAACCAAATTGTGCAAC+TGG + chr6_4:27644123-27644142 Msa0984000:CDS 45.0%
!! TTGGTGCCAGTTGCACAATT+TGG - chr6_4:27644132-27644151 None:intergenic 45.0%
GATGGAGTCCAATATTCCTC+AGG - chr6_4:27644285-27644304 None:intergenic 45.0%
TGTTTGGTATGGCTGCAGTT+AGG + chr6_4:27644463-27644482 Msa0984000:CDS 45.0%
GCAGCTACATGGTATGTGAT+TGG + chr6_4:27644588-27644607 Msa0984000:CDS 45.0%
CCAGAAGGACCAGCAATATC+AGG - chr6_4:27641770-27641789 None:intergenic 50.0%
CCTGATATTGCTGGTCCTTC+TGG + chr6_4:27641767-27641786 Msa0984000:CDS 50.0%
!! GAGCAAGGGTTGTTTCTCAG+TGG + chr6_4:27642927-27642946 Msa0984000:CDS 50.0%
! GAGATCCAACCTTGCTGCTT+TGG + chr6_4:27643236-27643255 Msa0984000:CDS 50.0%
GAACTCCAAAGCAGCAAGGT+TGG - chr6_4:27643244-27643263 None:intergenic 50.0%
CCTACTCTTACATTGCCACG+TGG - chr6_4:27643282-27643301 None:intergenic 50.0%
CCACGTGGCAATGTAAGAGT+AGG + chr6_4:27643279-27643298 Msa0984000:CDS 50.0%
GTAGGTGCAAGTCATACAGC+AGG + chr6_4:27643297-27643316 Msa0984000:CDS 50.0%
ACTGGCAATCCCCGTCTAAT+TGG - chr6_4:27644432-27644451 None:intergenic 50.0%
AATTAGACGGGGATTGCCAG+TGG + chr6_4:27644431-27644450 Msa0984000:CDS 50.0%
!! GAGTTGAAAGAGCATTGGGG+AGG + chr6_4:27644513-27644532 Msa0984000:CDS 50.0%
! TTGGGGAGGTTCTCTAGCTT+TGG + chr6_4:27644527-27644546 Msa0984000:CDS 50.0%
GAACAAGGTGTGGCAGCAAG+AGG - chr6_4:27641494-27641513 None:intergenic 55.0%
TTGATGTCGAAGCAGCCACG+TGG + chr6_4:27643264-27643283 Msa0984000:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 27641472 27644791 27641472 ID=Msa0984000;Name=Msa0984000
chr6_4 mRNA 27641472 27644791 27641472 ID=Msa0984000-mRNA-1;Parent=Msa0984000;Name=Msa0984000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=7|1|1|1|1|1|4|132|477
chr6_4 exon 27641472 27641865 27641472 ID=Msa0984000-mRNA-1:exon:7800;Parent=Msa0984000-mRNA-1
chr6_4 exon 27642752 27643008 27642752 ID=Msa0984000-mRNA-1:exon:7801;Parent=Msa0984000-mRNA-1
chr6_4 exon 27643227 27643407 27643227 ID=Msa0984000-mRNA-1:exon:7802;Parent=Msa0984000-mRNA-1
chr6_4 exon 27644051 27644791 27644051 ID=Msa0984000-mRNA-1:exon:7803;Parent=Msa0984000-mRNA-1
chr6_4 five_prime_UTR 27641472 27641478 27641472 ID=Msa0984000-mRNA-1:five_prime_utr;Parent=Msa0984000-mRNA-1
chr6_4 CDS 27641479 27641865 27641479 ID=Msa0984000-mRNA-1:cds;Parent=Msa0984000-mRNA-1
chr6_4 CDS 27642752 27643008 27642752 ID=Msa0984000-mRNA-1:cds;Parent=Msa0984000-mRNA-1
chr6_4 CDS 27643227 27643407 27643227 ID=Msa0984000-mRNA-1:cds;Parent=Msa0984000-mRNA-1
chr6_4 CDS 27644051 27644659 27644051 ID=Msa0984000-mRNA-1:cds;Parent=Msa0984000-mRNA-1
chr6_4 three_prime_UTR 27644660 27644791 27644660 ID=Msa0984000-mRNA-1:three_prime_utr;Parent=Msa0984000-mRNA-1
Gene Sequence

>Msa0984000

ATGATGTCTTATCCTCTTGCTGCCACACCTTGTTCTCAAACTCAAACCATAAACATGTCTACTGTTACTTCTACATCTCTTCCTTTCTTCACTCCAAAACCCTCAAATTTCCAAAACAAGTCTTGTTTTTCTAAATCAAATTTCTCTACTCTTACATGTAAGGCATCATCATCAAGTTTTTCAGCATCCATGTTGGATTTTGACTTGTATGATCTTCTAGGAATTGATAGTTCATGTGATCAGTCACAGATTAAGACGGCGTATCGATCCCTTCAGAAACGATGTCATCCTGATATTGCTGGTCCTTCTGGTCATGATATGGCTATCATTCTTAATGATGCTTATGCCATTCTTTCGGATCCATTTGCTCGTTTTGCCTATGATAAGGAGCATGCAAAGATCACAGAATTCAAAGGCTTCACTGGAAGACCATTGTATTCAGTTTGGTGTGGTTCACAAAGTGAACAGAGAGCTATATTTGTTGATGAAATAAAATGTGTTGGATGCCTAAAATGTGCTTTGTTAGCTGAAAAAACTTTTGCTATAGAATCAGTTTATGGAAGAGCAAGGGTTGTTTCTCAGTGGGCTGATTCTGAACCCACAATTGATGAGGCAATTCAAGCTTGTCCTGTCAACTGCATTTCAGTTGTTGAGAGATCCAACCTTGCTGCTTTGGAGTTCTTGATGTCGAAGCAGCCACGTGGCAATGTAAGAGTAGGTGCAAGTCATACAGCAGGTGCTCGTGTCTCAAACATATTTGTAGATGTGGAGAGGTTTCAGACTAGATTTCAAGAGACAATGCAAAAAGCTACCAAGTATTCTCAGGAAACAGACCTCCAAAGAGAATCAAGAATGTCAGCAATTCAAGCAATAAGATCAATTTCCAACTGGTTATATTGGCAACCAAATTGTGCAACTGGCACCAAAAGCATGACAAAAGTTGCGCAAAAATTACTACCTGATCCAAATCTTAGTAAGCTAAGAGATGCAGCTGCAAAGAGAAAATTAAAAGATACACAAAAAACCAAACATAAAACCCCCATAAATTCCATTCATCCTGAGGAATATTGGACTCCATCAACTGTTGTTCTTCCTTCTTCAACTAGTACTACTACTACTGCACCAATTGAGAAGGCTACATTTGCTAAAGGAAAGAAACAAAGAATAAGAAGTGATATTGAAACATATGAGAATGAAAATAGTCCAATTAGACGGGGATTGCCAGTGGTTACTTCATTGTTTGGTATGGCTGCAGTTAGGTTACATGAAGTAGGATCATCAACAGTTGAGTTGAAAGAGCATTGGGGAGGTTCTCTAGCTTTGGAAATCGTTAACAGCTCTTGGTTGCAATATATATTGGTAGCAGCTACATGGTATGTGATTGGAAGGGTTGCTGTAGAATTTGTGGCCAACATTGGAAATAGAAATCGATAG

Protein sequence

>Msa0984000

MMSYPLAATPCSQTQTINMSTVTSTSLPFFTPKPSNFQNKSCFSKSNFSTLTCKASSSSFSASMLDFDLYDLLGIDSSCDQSQIKTAYRSLQKRCHPDIAGPSGHDMAIILNDAYAILSDPFARFAYDKEHAKITEFKGFTGRPLYSVWCGSQSEQRAIFVDEIKCVGCLKCALLAEKTFAIESVYGRARVVSQWADSEPTIDEAIQACPVNCISVVERSNLAALEFLMSKQPRGNVRVGASHTAGARVSNIFVDVERFQTRFQETMQKATKYSQETDLQRESRMSAIQAIRSISNWLYWQPNCATGTKSMTKVAQKLLPDPNLSKLRDAAAKRKLKDTQKTKHKTPINSIHPEEYWTPSTVVLPSSTSTTTTAPIEKATFAKGKKQRIRSDIETYENENSPIRRGLPVVTSLFGMAAVRLHEVGSSTVELKEHWGGSLALEIVNSSWLQYILVAATWYVIGRVAVEFVANIGNRNR*