Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281660 | XP_003627756.1 | 91.743 | 436 | 28 | 2 | 1 | 433 | 1 | 431 | 0.0 | 824 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281660 | sp|Q9SXD5|GSXL3_ARATH | 52.558 | 430 | 188 | 5 | 4 | 422 | 13 | 437 | 3.61e-154 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281660 | G7LEJ7 | 91.743 | 436 | 28 | 2 | 1 | 433 | 1 | 431 | 0.0 | 824 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051960 | Msa1281660 | 0.802859 | 4.593790e-49 | -8.615850e-47 |
| Msa0094710 | Msa1281660 | 0.817158 | 3.813346e-52 | -8.615850e-47 |
| Msa0101960 | Msa1281660 | 0.811858 | 5.673242e-51 | -8.615850e-47 |
| Msa0613420 | Msa1281660 | 0.818508 | 1.889564e-52 | -8.615850e-47 |
| Msa0635270 | Msa1281660 | 0.803674 | 3.115019e-49 | -8.615850e-47 |
| Msa0641130 | Msa1281660 | 0.842409 | 2.631866e-58 | -8.615850e-47 |
| Msa0823370 | Msa1281660 | 0.815583 | 8.582289e-52 | -8.615850e-47 |
| Msa0823540 | Msa1281660 | 0.805929 | 1.052806e-49 | -8.615850e-47 |
| Msa1238600 | Msa1281660 | 0.808538 | 2.948425e-50 | -8.615850e-47 |
| Msa1256060 | Msa1281660 | 0.830328 | 3.123765e-55 | -8.615850e-47 |
| Msa1259860 | Msa1281660 | 0.800922 | 1.148192e-48 | -8.615850e-47 |
| Msa1281660 | Msa1281690 | 0.817770 | 2.776195e-52 | -8.615850e-47 |
| Msa1281660 | Msa1306830 | 0.818369 | 2.031686e-52 | -8.615850e-47 |
| Msa1281660 | Msa1319560 | 0.806011 | 1.011837e-49 | -8.615850e-47 |
| Msa1281660 | Msa1320850 | 0.830088 | 3.575293e-55 | -8.615850e-47 |
| Msa1281660 | Msa1320860 | 0.840806 | 6.965705e-58 | -8.615850e-47 |
| Msa1281660 | Msa1419840 | 0.806247 | 9.025297e-50 | -8.615850e-47 |
| Msa0403470 | Msa1281660 | -0.808737 | 2.673484e-50 | -8.615850e-47 |
| Msa1011250 | Msa1281660 | 0.817954 | 2.522836e-52 | -8.615850e-47 |
| Msa1069890 | Msa1281660 | 0.805484 | 1.305274e-49 | -8.615850e-47 |
| Msa0355550 | Msa1281660 | 0.812062 | 5.121949e-51 | -8.615850e-47 |
| Msa1122150 | Msa1281660 | 0.804019 | 2.641145e-49 | -8.615850e-47 |
| Msa1160560 | Msa1281660 | 0.802386 | 5.749671e-49 | -8.615850e-47 |
| Msa1181140 | Msa1281660 | 0.807970 | 3.896419e-50 | -8.615850e-47 |
| Msa1186160 | Msa1281660 | 0.816006 | 6.907715e-52 | -8.615850e-47 |
| Msa1208990 | Msa1281660 | 0.819556 | 1.091709e-52 | -8.615850e-47 |
| Msa0517270 | Msa1281660 | 0.887372 | 1.511435e-72 | -8.615850e-47 |
| Msa0545050 | Msa1281660 | 0.833132 | 6.358065e-56 | -8.615850e-47 |
| Msa0600590 | Msa1281660 | 0.843190 | 1.631290e-58 | -8.615850e-47 |
| Msa0862620 | Msa1281660 | 0.800669 | 1.292898e-48 | -8.615850e-47 |
| Msa0944020 | Msa1281660 | 0.801991 | 6.934629e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281660 | MtrunA17_Chr8g0352481 | 91.743 | 436 | 28 | 2 | 1 | 433 | 1 | 431 | 0.0 | 824 |
| Msa1281660 | MtrunA17_Chr8g0352461 | 83.982 | 437 | 61 | 3 | 1 | 433 | 1 | 432 | 0.0 | 752 |
| Msa1281660 | MtrunA17_Chr5g0399001 | 51.376 | 436 | 193 | 7 | 4 | 428 | 33 | 460 | 2.09e-146 | 425 |
| Msa1281660 | MtrunA17_Chr3g0091441 | 40.961 | 437 | 227 | 11 | 4 | 421 | 13 | 437 | 1.35e-107 | 325 |
| Msa1281660 | MtrunA17_Chr3g0139441 | 28.095 | 210 | 121 | 6 | 6 | 211 | 41 | 224 | 6.22e-17 | 82.4 |
| Msa1281660 | MtrunA17_Chr2g0304651 | 26.877 | 253 | 127 | 8 | 3 | 221 | 4 | 232 | 5.62e-16 | 80.1 |
| Msa1281660 | MtrunA17_Chr7g0268621 | 23.488 | 281 | 174 | 6 | 4 | 278 | 6 | 251 | 1.09e-15 | 78.6 |
| Msa1281660 | MtrunA17_Chr2g0304721 | 26.877 | 253 | 127 | 8 | 3 | 221 | 4 | 232 | 2.23e-15 | 78.2 |
| Msa1281660 | MtrunA17_Chr2g0305211 | 25.820 | 244 | 123 | 8 | 4 | 213 | 5 | 224 | 4.72e-15 | 77.0 |
| Msa1281660 | MtrunA17_Chr2g0305231 | 25.820 | 244 | 123 | 8 | 4 | 213 | 5 | 224 | 4.72e-15 | 77.0 |
| Msa1281660 | MtrunA17_Chr1g0148801 | 24.038 | 208 | 128 | 6 | 6 | 211 | 18 | 197 | 2.41e-14 | 74.3 |
| Msa1281660 | MtrunA17_Chr2g0301471 | 27.404 | 208 | 99 | 7 | 3 | 183 | 13 | 195 | 6.38e-14 | 73.6 |
| Msa1281660 | MtrunA17_Chr2g0301661 | 27.885 | 208 | 98 | 7 | 3 | 183 | 13 | 195 | 7.97e-14 | 73.2 |
| Msa1281660 | MtrunA17_Chr7g0268611 | 24.681 | 235 | 143 | 5 | 3 | 230 | 7 | 214 | 1.33e-13 | 72.0 |
| Msa1281660 | MtrunA17_Chr1g0182991 | 24.413 | 213 | 124 | 5 | 6 | 211 | 27 | 209 | 2.90e-13 | 71.2 |
| Msa1281660 | MtrunA17_Chr5g0412881 | 24.880 | 209 | 131 | 4 | 4 | 210 | 6 | 190 | 2.06e-12 | 68.6 |
| Msa1281660 | MtrunA17_Chr1g0147221 | 24.880 | 209 | 128 | 6 | 6 | 211 | 44 | 226 | 1.57e-11 | 65.9 |
| Msa1281660 | MtrunA17_Chr8g0350371 | 22.667 | 225 | 147 | 5 | 4 | 226 | 6 | 205 | 2.87e-11 | 64.7 |
| Msa1281660 | MtrunA17_Chr6g0485621 | 24.883 | 213 | 127 | 5 | 6 | 211 | 34 | 220 | 7.27e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281660 | AT1G62620.1 | 52.558 | 430 | 188 | 5 | 4 | 422 | 13 | 437 | 3.67e-155 | 447 |
| Msa1281660 | AT1G12140.1 | 53.147 | 429 | 188 | 4 | 2 | 422 | 11 | 434 | 6.18e-155 | 446 |
| Msa1281660 | AT1G12140.3 | 53.147 | 429 | 188 | 4 | 2 | 422 | 11 | 434 | 6.18e-155 | 446 |
| Msa1281660 | AT1G63370.1 | 52.093 | 430 | 190 | 5 | 4 | 422 | 13 | 437 | 3.45e-153 | 442 |
| Msa1281660 | AT1G12200.1 | 53.580 | 433 | 181 | 6 | 4 | 422 | 14 | 440 | 8.28e-153 | 441 |
| Msa1281660 | AT1G12140.2 | 52.681 | 429 | 188 | 5 | 2 | 422 | 11 | 432 | 1.79e-151 | 437 |
| Msa1281660 | AT1G62600.1 | 51.620 | 432 | 191 | 5 | 4 | 422 | 13 | 439 | 2.15e-148 | 430 |
| Msa1281660 | AT1G62580.2 | 52.791 | 430 | 186 | 6 | 4 | 422 | 14 | 437 | 1.93e-145 | 422 |
| Msa1281660 | AT1G12160.1 | 49.099 | 444 | 192 | 8 | 4 | 421 | 12 | 447 | 4.10e-145 | 422 |
| Msa1281660 | AT1G62620.2 | 55.000 | 380 | 158 | 4 | 4 | 375 | 13 | 387 | 8.68e-144 | 416 |
| Msa1281660 | AT1G65860.1 | 49.061 | 426 | 204 | 5 | 4 | 421 | 13 | 433 | 1.54e-142 | 415 |
| Msa1281660 | AT1G12130.1 | 50.444 | 450 | 189 | 8 | 4 | 428 | 13 | 453 | 2.74e-142 | 415 |
| Msa1281660 | AT1G62560.1 | 48.485 | 429 | 203 | 7 | 4 | 421 | 13 | 434 | 1.10e-141 | 413 |
| Msa1281660 | AT1G62580.1 | 49.673 | 459 | 189 | 8 | 4 | 422 | 14 | 470 | 7.81e-141 | 412 |
| Msa1281660 | AT1G62540.1 | 50.235 | 426 | 199 | 5 | 4 | 421 | 13 | 433 | 1.39e-139 | 407 |
| Msa1281660 | AT1G62540.2 | 48.430 | 446 | 202 | 6 | 4 | 421 | 13 | 458 | 2.34e-137 | 402 |
| Msa1281660 | AT1G62570.1 | 49.533 | 428 | 199 | 6 | 4 | 421 | 13 | 433 | 8.26e-137 | 400 |
| Msa1281660 | AT1G62600.2 | 53.665 | 382 | 162 | 4 | 4 | 375 | 13 | 389 | 9.45e-137 | 398 |
| Msa1281660 | AT1G62560.2 | 50.781 | 384 | 174 | 6 | 4 | 379 | 13 | 389 | 8.40e-133 | 388 |
| Msa1281660 | AT1G63340.1 | 48.131 | 428 | 169 | 6 | 4 | 422 | 14 | 397 | 2.78e-130 | 382 |
| Msa1281660 | AT1G62540.3 | 48.122 | 426 | 190 | 6 | 4 | 421 | 13 | 415 | 2.15e-129 | 381 |
| Msa1281660 | AT1G63370.2 | 56.075 | 321 | 133 | 3 | 4 | 316 | 13 | 333 | 2.40e-124 | 364 |
| Msa1281660 | AT1G12200.2 | 57.276 | 323 | 127 | 3 | 4 | 316 | 14 | 335 | 1.24e-121 | 359 |
| Msa1281660 | AT5G61290.1 | 44.292 | 438 | 212 | 9 | 4 | 421 | 16 | 441 | 9.02e-118 | 352 |
| Msa1281660 | AT1G62580.3 | 55.287 | 331 | 130 | 3 | 4 | 316 | 14 | 344 | 2.90e-113 | 337 |
| Msa1281660 | AT5G07800.1 | 41.723 | 441 | 223 | 11 | 3 | 421 | 15 | 443 | 2.31e-109 | 330 |
| Msa1281660 | AT1G63390.1 | 58.042 | 143 | 52 | 2 | 4 | 138 | 13 | 155 | 5.02e-42 | 146 |
| Msa1281660 | AT5G45180.1 | 24.536 | 485 | 236 | 22 | 3 | 394 | 12 | 459 | 8.22e-19 | 89.0 |
| Msa1281660 | AT4G13260.2 | 23.558 | 208 | 133 | 4 | 6 | 211 | 30 | 213 | 6.97e-13 | 69.7 |
| Msa1281660 | AT4G13260.1 | 23.558 | 208 | 133 | 4 | 6 | 211 | 30 | 213 | 1.43e-12 | 69.3 |
| Msa1281660 | AT5G11320.2 | 23.301 | 206 | 130 | 4 | 6 | 211 | 19 | 196 | 1.57e-12 | 68.9 |
| Msa1281660 | AT5G11320.1 | 23.301 | 206 | 130 | 4 | 6 | 211 | 19 | 196 | 4.19e-12 | 68.2 |
| Msa1281660 | AT1G04610.1 | 22.535 | 213 | 130 | 4 | 6 | 210 | 39 | 224 | 7.11e-11 | 64.3 |
Find 130 sgRNAs with CRISPR-Local
Find 440 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACAGGTTGTGATCTTAAT+TGG | 0.129363 | 8_3:-21367708 | Msa1281660:intron |
| AGAATATAGTTTGAAGTATT+TGG | 0.138986 | 8_3:-21361254 | Msa1281660:three_prime_UTR |
| CTGTGATCCGAGAACGTTTC+CGG | 0.221154 | 8_3:-21368654 | Msa1281660:CDS |
| TCATTCCATACGTCCGTTTC+AGG | 0.249205 | 8_3:-21366848 | Msa1281660:intron |
| GAAGAATTTGCAGGTGAGTT+TGG | 0.263053 | 8_3:-21368605 | Msa1281660:CDS |
| CCAAGACATGCTTTGGTTCC+TGG | 0.277481 | 8_3:-21368437 | Msa1281660:CDS |
| GCTCCATGGCTCTCTTTCAT+TGG | 0.284807 | 8_3:-21367127 | Msa1281660:CDS |
| CAAATACCACATTCCTTTCC+TGG | 0.326620 | 8_3:-21367224 | Msa1281660:CDS |
| TTACTATTCCATTAGTTTCC+AGG | 0.333072 | 8_3:+21367206 | None:intergenic |
| GCAGGTGAGTTTGGAATTCA+TGG | 0.347435 | 8_3:-21368596 | Msa1281660:CDS |
| ATTCCTTTCCTGGAAACTAA+TGG | 0.347863 | 8_3:-21367214 | Msa1281660:CDS |
| GAATGAATCAGCTTCCTAAA+AGG | 0.358411 | 8_3:-21361324 | Msa1281660:exon |
| TTACCCTGTACAGTGAATTA+TGG | 0.368004 | 8_3:+21367370 | None:intergenic |
| CACCACCTCTGTTTCAAATC+GGG | 0.375170 | 8_3:+21368568 | None:intergenic |
| GGTTGCCTCCGTTAGAAGAT+TGG | 0.375234 | 8_3:-21361436 | Msa1281660:CDS |
| TCACCACCTCTGTTTCAAAT+CGG | 0.375247 | 8_3:+21368567 | None:intergenic |
| AACTTCATACCCTTCAATAG+TGG | 0.379745 | 8_3:+21367606 | None:intergenic |
| ATGACTGGGATGATAACTAT+TGG | 0.380916 | 8_3:-21361361 | Msa1281660:CDS |
| CTGTGAACTGTTTCTCTGGT+TGG | 0.381244 | 8_3:+21368758 | None:intergenic |
| TGTAGAACCAAGACATGCTT+TGG | 0.386407 | 8_3:-21368444 | Msa1281660:CDS |
| CATGTCTTGGTTCTACAAAA+TGG | 0.387592 | 8_3:+21368450 | None:intergenic |
| ATACCCTTCAATAGTGGATT+CGG | 0.390856 | 8_3:+21367612 | None:intergenic |
| TGTGAACTGTTTCTCTGGTT+GGG | 0.399952 | 8_3:+21368759 | None:intergenic |
| TGTGATCCGAGAACGTTTCC+GGG | 0.400644 | 8_3:-21368653 | Msa1281660:CDS |
| TCATGACCCGGAAACGTTCT+CGG | 0.402567 | 8_3:+21368647 | None:intergenic |
| GGCGATGAGGCCGGAGACTC+CGG | 0.404278 | 8_3:+21368895 | None:intergenic |
| TTGAGAGGAAAGGGAAGGAC+TGG | 0.407090 | 8_3:-21368541 | Msa1281660:CDS |
| CAATGGCTAGCGGCACAGAT+TGG | 0.414104 | 8_3:-21361458 | Msa1281660:CDS |
| TGGTGAAAGTTGAGAGGAAA+GGG | 0.417022 | 8_3:-21368550 | Msa1281660:CDS |
| AGATTCCATCATTTCTTCTT+CGG | 0.421032 | 8_3:+21366924 | None:intergenic |
| GCCTTCCTGTTGTAGCTCCT+TGG | 0.421074 | 8_3:+21368871 | None:intergenic |
| GAAGCGGTTGTTGTATGTTC+TGG | 0.424267 | 8_3:-21368473 | Msa1281660:CDS |
| TTCCTCCTTCGCTGGCTCCA+TGG | 0.424941 | 8_3:-21367141 | Msa1281660:CDS |
| GACATCTCAAAAGATATTGC+AGG | 0.428767 | 8_3:-21367666 | Msa1281660:CDS |
| TACAGGTTGTGATCTTAATT+GGG | 0.433986 | 8_3:-21367707 | Msa1281660:intron |
| TTACAATAGAAATAGTTTCC+TGG | 0.434054 | 8_3:+21367004 | None:intergenic |
| AAATCTTCCAAGGCAAATCA+TGG | 0.439066 | 8_3:-21368711 | Msa1281660:CDS |
| ATTAAATGTGTATATGAAGA+TGG | 0.442499 | 8_3:-21367434 | Msa1281660:CDS |
| TTTCTAGACTTGCCGTGGCC+AGG | 0.444580 | 8_3:-21367022 | Msa1281660:intron |
| GTGATCGGCGCCGGAGTCTC+CGG | 0.449086 | 8_3:-21368905 | Msa1281660:CDS |
| CCTGGTATTGAAAACTTTCG+TGG | 0.451982 | 8_3:-21368419 | Msa1281660:CDS |
| TTGTTCACATAAATAAAGAT+TGG | 0.454646 | 8_3:-21361140 | Msa1281660:three_prime_UTR |
| CGCCGCCAAGGAGCTACAAC+AGG | 0.458403 | 8_3:-21368876 | Msa1281660:CDS |
| GGCTTGGTTGTCTTTGAAGA+TGG | 0.458513 | 8_3:-21367413 | Msa1281660:CDS |
| ACTGCTGTGAACTGTTTCTC+TGG | 0.461299 | 8_3:+21368754 | None:intergenic |
| AGGATTCTCGCTTGGACAAA+GGG | 0.470355 | 8_3:+21368675 | None:intergenic |
| TTTAATGCTGATTGTTACAT+TGG | 0.471408 | 8_3:-21361286 | Msa1281660:three_prime_UTR |
| CGGATCACAGGATTCTCGCT+TGG | 0.472811 | 8_3:+21368667 | None:intergenic |
| AAGAATCCCATGATTTGCCT+TGG | 0.478861 | 8_3:+21368704 | None:intergenic |
| ACCTACCGAAGAAGAAATGA+TGG | 0.482196 | 8_3:-21366929 | Msa1281660:CDS |
| ATGGTTAAAGTTGCAGTGAT+CGG | 0.483813 | 8_3:-21368920 | Msa1281660:CDS |
| AATGGCTAGCGGCACAGATT+GGG | 0.485605 | 8_3:-21361457 | Msa1281660:CDS |
| CAGGATTCTCGCTTGGACAA+AGG | 0.488933 | 8_3:+21368674 | None:intergenic |
| GAGAAGAACAACCGCGTTGG+AGG | 0.491903 | 8_3:-21368830 | Msa1281660:CDS |
| TTGGATGGACAATATGTTGA+TGG | 0.492691 | 8_3:-21361417 | Msa1281660:CDS |
| ACTATTGAAGGGTATGAAGT+TGG | 0.493692 | 8_3:-21367604 | Msa1281660:CDS |
| CTCCTTGGCGGCGATGAGGC+CGG | 0.501222 | 8_3:+21368886 | None:intergenic |
| TAAAGACATATATCGCATCT+TGG | 0.506300 | 8_3:-21366899 | Msa1281660:CDS |
| AGGACTGGGTTGTTGAGTCT+AGG | 0.506737 | 8_3:-21368526 | Msa1281660:CDS |
| AGCTGATTCATTCTGAATGA+TGG | 0.509144 | 8_3:+21361334 | None:intergenic |
| TTAATGCTGATTGTTACATT+GGG | 0.513347 | 8_3:-21361285 | Msa1281660:three_prime_UTR |
| TGACTGGGATGATAACTATT+GGG | 0.515543 | 8_3:-21361360 | Msa1281660:CDS |
| CGAAGCATTTCTTCATGACC+CGG | 0.517432 | 8_3:+21368635 | None:intergenic |
| GGACTGGGTTGTTGAGTCTA+GGG | 0.521342 | 8_3:-21368525 | Msa1281660:CDS |
| ATTCCATTAGTTTCCAGGAA+AGG | 0.523441 | 8_3:+21367211 | None:intergenic |
| ATGGAATGAGTGTAACGCTT+GGG | 0.523974 | 8_3:+21366862 | None:intergenic |
| AGCCATGGAGCCAGCGAAGG+AGG | 0.524115 | 8_3:+21367139 | None:intergenic |
| AAATACCTGAAACGGACGTA+TGG | 0.525652 | 8_3:+21366843 | None:intergenic |
| TGAGAGGAAAGGGAAGGACT+GGG | 0.526653 | 8_3:-21368540 | Msa1281660:CDS |
| CTCCGGCCTCATCGCCGCCA+AGG | 0.529871 | 8_3:-21368888 | Msa1281660:CDS |
| GATGCCATAATTCACTGTAC+AGG | 0.531205 | 8_3:-21367374 | Msa1281660:CDS |
| TATCACGTTCTTAACATGCA+TGG | 0.531481 | 8_3:+21369030 | None:intergenic |
| TCCTCACTCTTTCAAAGACC+AGG | 0.534154 | 8_3:-21368366 | Msa1281660:intron |
| ACAGACGCAAATACCTGAAA+CGG | 0.534676 | 8_3:+21366835 | None:intergenic |
| CAGGTGAGTTTGGAATTCAT+GGG | 0.536690 | 8_3:-21368595 | Msa1281660:CDS |
| TTTGAGATGTCAAATGAACT+AGG | 0.538090 | 8_3:+21367678 | None:intergenic |
| TTCCTGTTGTAGCTCCTTGG+CGG | 0.540823 | 8_3:+21368874 | None:intergenic |
| TAGAAATAGTTTCCTGGCCA+CGG | 0.545910 | 8_3:+21367010 | None:intergenic |
| CGATTGAAGATAATCGCGTT+GGG | 0.546471 | 8_3:-21367183 | Msa1281660:CDS |
| CGGAAACGTTCTCGGATCAC+AGG | 0.547744 | 8_3:+21368655 | None:intergenic |
| TCTCGAAAACGACGACGTTG+TGG | 0.551159 | 8_3:+21368849 | None:intergenic |
| CCAGGAACCAAAGCATGTCT+TGG | 0.554091 | 8_3:+21368437 | None:intergenic |
| ACAACCGCGTTGGAGGAACC+TGG | 0.554708 | 8_3:-21368823 | Msa1281660:CDS |
| ATGAAATGTATAGAGATGAC+TGG | 0.555017 | 8_3:-21361376 | Msa1281660:CDS |
| GTTGTGATCTTAATTGGGCT+AGG | 0.557914 | 8_3:-21367702 | Msa1281660:CDS |
| ACGATTGAAGATAATCGCGT+TGG | 0.558753 | 8_3:-21367184 | Msa1281660:CDS |
| TAAAACTCTTGCAACCCACT+TGG | 0.561189 | 8_3:+21366969 | None:intergenic |
| ATCTTTATTTATGTGAACAA+AGG | 0.561797 | 8_3:+21361143 | None:intergenic |
| TCCATCATTTCTTCTTCGGT+AGG | 0.562596 | 8_3:+21366928 | None:intergenic |
| AAAGTTGCAGTGATCGGCGC+CGG | 0.565896 | 8_3:-21368914 | Msa1281660:CDS |
| GTGGTGAAAGTTGAGAGGAA+AGG | 0.568850 | 8_3:-21368551 | Msa1281660:CDS |
| CTTTACGCACAAATCTTCCA+AGG | 0.568859 | 8_3:-21368721 | Msa1281660:CDS |
| TTCGAGAAGAACAACCGCGT+TGG | 0.570371 | 8_3:-21368833 | Msa1281660:CDS |
| AAAACCGAATCCACTATTGA+AGG | 0.571520 | 8_3:-21367616 | Msa1281660:CDS |
| GAGAGCCATGGAGCCAGCGA+AGG | 0.571530 | 8_3:+21367136 | None:intergenic |
| CAGAGGTGGTGAAAGTTGAG+AGG | 0.575528 | 8_3:-21368556 | Msa1281660:CDS |
| GTAGCTCCTTGGCGGCGATG+AGG | 0.577088 | 8_3:+21368882 | None:intergenic |
| GCCTCCGTTAGAAGATTGGA+TGG | 0.580895 | 8_3:-21361432 | Msa1281660:CDS |
| AATCTTCCAAGGCAAATCAT+GGG | 0.585719 | 8_3:-21368710 | Msa1281660:CDS |
| AGATATTGCAGGAGTTGCAA+AGG | 0.586378 | 8_3:-21367655 | Msa1281660:CDS |
| AAACCGAATCCACTATTGAA+GGG | 0.595030 | 8_3:-21367615 | Msa1281660:CDS |
| CTGGTTGGGTCTATACTAAG+AGG | 0.600004 | 8_3:+21368773 | None:intergenic |
| GCCAAGGAGCTACAACAGGA+AGG | 0.605200 | 8_3:-21368872 | Msa1281660:CDS |
| GAAGATTTGTGCGTAAAGAG+TGG | 0.607471 | 8_3:+21368726 | None:intergenic |
| TGGGTCTATACTAAGAGGAT+CGG | 0.608316 | 8_3:+21368778 | None:intergenic |
| ATGTGTATATGAAGATGGCT+TGG | 0.608479 | 8_3:-21367429 | Msa1281660:CDS |
| TAATATTTCTAGACTTGCCG+TGG | 0.612132 | 8_3:-21367027 | Msa1281660:intron |
| TTGTCCATCCAATCTTCTAA+CGG | 0.613321 | 8_3:+21361428 | None:intergenic |
| TATGGAATGAGTGTAACGCT+TGG | 0.615376 | 8_3:+21366861 | None:intergenic |
| GAAAGTTGAGAGGAAAGGGA+AGG | 0.618934 | 8_3:-21368546 | Msa1281660:CDS |
| AATTGAGTTACAAGCCAAGT+GGG | 0.620693 | 8_3:-21366983 | Msa1281660:CDS |
| GGTATGAAGTTGGAAAATGC+TGG | 0.621768 | 8_3:-21367594 | Msa1281660:CDS |
| GAGTCAAGAAGTGTTTGAAG+CGG | 0.623772 | 8_3:-21368489 | Msa1281660:CDS |
| ATGCCATAATTCACTGTACA+GGG | 0.625503 | 8_3:-21367373 | Msa1281660:intron |
| TAGTTTCCAGGAAAGGAATG+TGG | 0.628193 | 8_3:+21367218 | None:intergenic |
| CAATATATGTTTCCATACTG+TGG | 0.630725 | 8_3:-21367571 | Msa1281660:intron |
| TGGGTTGTTGAGTCTAGGGG+AGG | 0.634206 | 8_3:-21368521 | Msa1281660:CDS |
| ACCTGGTCTTTGAAAGAGTG+AGG | 0.636343 | 8_3:+21368365 | None:intergenic |
| AAACCAATGAAAGAGAGCCA+TGG | 0.638563 | 8_3:+21367124 | None:intergenic |
| GACCCGATTTGAAACAGAGG+TGG | 0.641010 | 8_3:-21368570 | Msa1281660:CDS |
| GACTGGGTTGTTGAGTCTAG+GGG | 0.643870 | 8_3:-21368524 | Msa1281660:CDS |
| TGCTTGTCTACTAATCACGA+TGG | 0.655242 | 8_3:-21368939 | Msa1281660:exon |
| TGAAATGTATAGAGATGACT+GGG | 0.657076 | 8_3:-21361375 | Msa1281660:CDS |
| TAATTGAGTTACAAGCCAAG+TGG | 0.658830 | 8_3:-21366984 | Msa1281660:CDS |
| TCCATCCAATCTTCTAACGG+AGG | 0.663161 | 8_3:+21361431 | None:intergenic |
| AGACATATATCGCATCTTGG+AGG | 0.672722 | 8_3:-21366896 | Msa1281660:CDS |
| GTCAGGCTGACTACAAACAA+TGG | 0.679900 | 8_3:-21361475 | Msa1281660:intron |
| TGACTACAAACAATGGCTAG+CGG | 0.698143 | 8_3:-21361468 | Msa1281660:CDS |
| GTTGACCCGATTTGAAACAG+AGG | 0.712999 | 8_3:-21368573 | Msa1281660:CDS |
| ATATCCAGGTTCCTCCAACG+CGG | 0.760535 | 8_3:+21368819 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAATAAGTTGAAATTAT+TGG | - | chr8_3:21361902-21361921 | Msa1281660:intron | 10.0% |
| !!! | AAATATTTAGATTTAGATTT+TGG | - | chr8_3:21361973-21361992 | Msa1281660:intron | 10.0% |
| !!! | ATTAATTTTCCAAATAAAAT+AGG | + | chr8_3:21362464-21362483 | None:intergenic | 10.0% |
| !!! | ATTTTATTTGGAAAATTAAT+TGG | - | chr8_3:21362464-21362483 | Msa1281660:intron | 10.0% |
| !! | AATAGTAAAAAAATACATAA+CGG | - | chr8_3:21363875-21363894 | Msa1281660:intron | 10.0% |
| !!! | TTTTTTATTAAATGACTTAA+TGG | + | chr8_3:21366080-21366099 | None:intergenic | 10.0% |
| !!! | GTTTATTTTATTTGATTTTT+TGG | + | chr8_3:21366163-21366182 | None:intergenic | 10.0% |
| !!! | TTTTAAAGTTTTAAAAAGTT+GGG | + | chr8_3:21366400-21366419 | None:intergenic | 10.0% |
| !!! | CAATTAAATTTTTAATTAGT+AGG | - | chr8_3:21368124-21368143 | Msa1281660:intron | 10.0% |
| !! | TATATGTTACATTAAAAAAT+TGG | + | chr8_3:21368296-21368315 | None:intergenic | 10.0% |
| !! | TATATCTTACATTAAAAAAT+TGG | + | chr8_3:21368369-21368388 | None:intergenic | 10.0% |
| !!! | TAAAAGAAAAGATATTTTCA+GGG | + | chr8_3:21361153-21361172 | None:intergenic | 15.0% |
| !!! | TTAAAAGAAAAGATATTTTC+AGG | + | chr8_3:21361154-21361173 | None:intergenic | 15.0% |
| !!! | ATTTTCCAAATTTGAAAAAA+TGG | - | chr8_3:21361870-21361889 | Msa1281660:intron | 15.0% |
| !!! | TAAAACCATTTTTTCAAATT+TGG | + | chr8_3:21361878-21361897 | None:intergenic | 15.0% |
| !! | AATATCTATCATATAAAGTA+TGG | + | chr8_3:21362697-21362716 | None:intergenic | 15.0% |
| !! | ATATAAACTAATATTGTAAC+AGG | - | chr8_3:21362956-21362975 | Msa1281660:intron | 15.0% |
| !!! | TTCTTTCAATTTTAAATATG+AGG | + | chr8_3:21365113-21365132 | None:intergenic | 15.0% |
| !!! | TACAATTTTGTATTACATTA+AGG | - | chr8_3:21366316-21366335 | Msa1281660:intron | 15.0% |
| !!! | CTTTTAAAGTTTTAAAAAGT+TGG | + | chr8_3:21366401-21366420 | None:intergenic | 15.0% |
| !!! | CAACTTTTTAAAACTTTAAA+AGG | - | chr8_3:21366399-21366418 | Msa1281660:intron | 15.0% |
| !!! | CTTTTATTCTTATGATATTT+TGG | + | chr8_3:21366577-21366596 | None:intergenic | 15.0% |
| !!! | TAGTATAATGTTATTTTGTA+TGG | + | chr8_3:21367075-21367094 | None:intergenic | 15.0% |
| !! | CAAAATAACATTATACTAAA+AGG | - | chr8_3:21367077-21367096 | Msa1281660:intron | 15.0% |
| !!! | TTATGAAGTTAATTTTTTGT+AGG | + | chr8_3:21368012-21368031 | None:intergenic | 15.0% |
| !!! | ATTGTAGTAATTAGTTTTTA+AGG | + | chr8_3:21368108-21368127 | None:intergenic | 15.0% |
| !! | GTATTAGATTAACATTTATA+CGG | + | chr8_3:21368240-21368259 | None:intergenic | 15.0% |
| !!! | AAATTGTACATTTTTTTTGA+AGG | + | chr8_3:21368471-21368490 | None:intergenic | 15.0% |
| !! | TAAGCTTGTATTAAAAAATT+AGG | - | chr8_3:21368533-21368552 | Msa1281660:CDS | 15.0% |
| !!! | AAAAGAAAAGATATTTTCAG+GGG | + | chr8_3:21361152-21361171 | None:intergenic | 20.0% |
| !!! | ATTAAGATGAAGTATTTCAA+TGG | - | chr8_3:21361930-21361949 | Msa1281660:intron | 20.0% |
| !! | AATATTGTACAATTTAATCC+AGG | - | chr8_3:21362011-21362030 | Msa1281660:intron | 20.0% |
| !!! | TGTTTAATGCCTATTTTATT+TGG | - | chr8_3:21362452-21362471 | Msa1281660:intron | 20.0% |
| !! | ATTAAATGTGTATATGAAGA+TGG | - | chr8_3:21362771-21362790 | Msa1281660:intron | 20.0% |
| !! | TAAAAGAAAAAATACGTTGA+AGG | + | chr8_3:21362884-21362903 | None:intergenic | 20.0% |
| !!! | CTAAGAAATTAATCATTTTG+AGG | - | chr8_3:21362932-21362951 | Msa1281660:intron | 20.0% |
| !! | ATATAAATCACCTTCTTATA+GGG | + | chr8_3:21363817-21363836 | None:intergenic | 20.0% |
| !! | TATATAAATCACCTTCTTAT+AGG | + | chr8_3:21363818-21363837 | None:intergenic | 20.0% |
| !! | GGTACGATTAAAAAAAAAAA+CGG | - | chr8_3:21363896-21363915 | Msa1281660:intron | 20.0% |
| !! | TAATATTACATTAGATGCAA+TGG | - | chr8_3:21364310-21364329 | Msa1281660:intron | 20.0% |
| !! | TGAACTTAGAGTTAAAAAAA+TGG | - | chr8_3:21364503-21364522 | Msa1281660:intron | 20.0% |
| !!! | AATCTCTAGATTTTACAAAT+TGG | + | chr8_3:21364900-21364919 | None:intergenic | 20.0% |
| !!! | ACAAAAAGAAGGTATATTTT+GGG | - | chr8_3:21365561-21365580 | Msa1281660:intron | 20.0% |
| !! | TAGAAGGTAGAAATAAAAAA+CGG | - | chr8_3:21365623-21365642 | Msa1281660:intron | 20.0% |
| !! | TTTAAACAAATAGGATGATT+TGG | + | chr8_3:21366274-21366293 | None:intergenic | 20.0% |
| !!! | TAAAACTTTAAAAGGATGTT+TGG | - | chr8_3:21366407-21366426 | Msa1281660:intron | 20.0% |
| !! | ATCAACCTTAAATAATAACT+CGG | - | chr8_3:21366499-21366518 | Msa1281660:intron | 20.0% |
| !!! | AGAGCTTTGTATTATAAAAT+AGG | - | chr8_3:21366654-21366673 | Msa1281660:intron | 20.0% |
| !! | ATGTGTTAATAACAAACTTA+AGG | - | chr8_3:21366834-21366853 | Msa1281660:intron | 20.0% |
| !!! | TACTTTTGTATCTTAATGAT+AGG | + | chr8_3:21367451-21367470 | None:intergenic | 20.0% |
| !! | GCAAAAAATAAATTGTTTCA+AGG | + | chr8_3:21367562-21367581 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTGCCAACATAA+TGG | - | chr8_3:21367570-21367589 | Msa1281660:intron | 20.0% |
| !! | ATAGAAAAATAGTACCATAA+CGG | - | chr8_3:21367930-21367949 | Msa1281660:intron | 20.0% |
| !! | TTAATTGATATTAACCGTTA+TGG | + | chr8_3:21367947-21367966 | None:intergenic | 20.0% |
| !!! | TATACGGTACATTAAAATTT+TGG | + | chr8_3:21368224-21368243 | None:intergenic | 20.0% |
| !! | TTGTACATAAAATACATAGT+TGG | + | chr8_3:21368438-21368457 | None:intergenic | 20.0% |
| !!! | AAAAAATTAGGAGAGATTTT+TGG | - | chr8_3:21368545-21368564 | Msa1281660:CDS | 20.0% |
| !! | TACAAGTAAATAGTTAAACT+CGG | + | chr8_3:21368700-21368719 | None:intergenic | 20.0% |
| !!! | AGAATATAGTTTGAAGTATT+TGG | - | chr8_3:21368951-21368970 | Msa1281660:five_prime_UTR | 20.0% |
| !!! | ATCTTTATTTATGTGAACAA+AGG | + | chr8_3:21369065-21369084 | None:intergenic | 20.0% |
| ! | TGTATTAGAGAAAGACAAAT+AGG | - | chr8_3:21362074-21362093 | Msa1281660:intron | 25.0% |
| !! | AGGAGAAAGTTCATTATTTT+TGG | - | chr8_3:21362190-21362209 | Msa1281660:intron | 25.0% |
| !!! | AATTGTGTTTTTGTTTGAGT+CGG | - | chr8_3:21362343-21362362 | Msa1281660:intron | 25.0% |
| !! | ATTTTTAACATACCACAGTA+TGG | + | chr8_3:21362649-21362668 | None:intergenic | 25.0% |
| ! | TGGAGATATTTATTATGAGA+CGG | + | chr8_3:21362677-21362696 | None:intergenic | 25.0% |
| ! | TTACAATAGAAATAGTTTCC+TGG | + | chr8_3:21363204-21363223 | None:intergenic | 25.0% |
| !! | GGATAATTTTGCTCAATTAA+CGG | - | chr8_3:21363408-21363427 | Msa1281660:intron | 25.0% |
| !!! | TCAATTAACGGATTTAAGAT+AGG | - | chr8_3:21363420-21363439 | Msa1281660:intron | 25.0% |
| !! | TCATCTGAAATTGTATGTAA+TGG | - | chr8_3:21363588-21363607 | Msa1281660:intron | 25.0% |
| !!! | AGATGATTGTTTTAGTTGTT+TGG | - | chr8_3:21363724-21363743 | Msa1281660:intron | 25.0% |
| !! | TATTTGTGAGTTGAATTTGA+GGG | - | chr8_3:21364214-21364233 | Msa1281660:intron | 25.0% |
| !! | CACATCTATATGTTTTCATA+GGG | - | chr8_3:21364374-21364393 | Msa1281660:intron | 25.0% |
| !!! | TTATGTCATGTTTTTTCTAG+AGG | - | chr8_3:21364646-21364665 | Msa1281660:intron | 25.0% |
| !!! | GTTACTAGAGAATGTTTTAA+AGG | - | chr8_3:21364843-21364862 | Msa1281660:intron | 25.0% |
| ! | ATCGTTAAAATTATAAGCAC+CGG | + | chr8_3:21364930-21364949 | None:intergenic | 25.0% |
| ! | TTGTGAGAATGATAAAATAG+TGG | - | chr8_3:21365189-21365208 | Msa1281660:intron | 25.0% |
| ! | TGTGAGAATGATAAAATAGT+GGG | - | chr8_3:21365190-21365209 | Msa1281660:intron | 25.0% |
| !!! | GACAAAAAGAAGGTATATTT+TGG | - | chr8_3:21365560-21365579 | Msa1281660:intron | 25.0% |
| !!! | GTTTTTTATTTCTACCTTCT+AGG | + | chr8_3:21365624-21365643 | None:intergenic | 25.0% |
| !! | ATCTTCACAATCTTTTTAAC+CGG | - | chr8_3:21365908-21365927 | Msa1281660:intron | 25.0% |
| ! | TCCAATTAAATAACACCTTT+CGG | - | chr8_3:21366010-21366029 | Msa1281660:intron | 25.0% |
| !!! | ACTGTTTGAAACAATTTTTG+TGG | + | chr8_3:21366352-21366371 | None:intergenic | 25.0% |
| !!! | ATTCTTATGATATTTTGGCA+GGG | + | chr8_3:21366572-21366591 | None:intergenic | 25.0% |
| !!! | TATTCTTATGATATTTTGGC+AGG | + | chr8_3:21366573-21366592 | None:intergenic | 25.0% |
| !! | CAAAGCTCTAATATTTACTT+TGG | + | chr8_3:21366643-21366662 | None:intergenic | 25.0% |
| ! | AATACATATGACAATGTTGT+TGG | - | chr8_3:21366684-21366703 | Msa1281660:intron | 25.0% |
| !! | ATTTAAGTTAGCATATACCT+AGG | - | chr8_3:21366890-21366909 | Msa1281660:CDS | 25.0% |
| ! | AATAAGTGAGATTATTGATG+GGG | + | chr8_3:21367018-21367037 | None:intergenic | 25.0% |
| ! | CAATAAGTGAGATTATTGAT+GGG | + | chr8_3:21367019-21367038 | None:intergenic | 25.0% |
| ! | ACAATAAGTGAGATTATTGA+TGG | + | chr8_3:21367020-21367039 | None:intergenic | 25.0% |
| !! | CATTTTAAACGTACTCTTTT+TGG | + | chr8_3:21367658-21367677 | None:intergenic | 25.0% |
| !! | AAAGAGTACGTTTAAAATGA+TGG | - | chr8_3:21367659-21367678 | Msa1281660:CDS | 25.0% |
| !! | TATATAAATAGTAGCGCTTT+TGG | + | chr8_3:21367913-21367932 | None:intergenic | 25.0% |
| ! | AAGAATTTATAATCGGATAC+AGG | + | chr8_3:21368677-21368696 | None:intergenic | 25.0% |
| ! | AACTCGGAAGAATTTATAAT+CGG | + | chr8_3:21368684-21368703 | None:intergenic | 25.0% |
| !! | ATTCAATATCTTTGCCTTTT+AGG | + | chr8_3:21368898-21368917 | None:intergenic | 25.0% |
| !! | TTTAATGCTGATTGTTACAT+TGG | - | chr8_3:21368919-21368938 | Msa1281660:CDS | 25.0% |
| !! | TTAATGCTGATTGTTACATT+GGG | - | chr8_3:21368920-21368939 | Msa1281660:CDS | 25.0% |
| !! | TTGTGTTTTTCTTTTGAAGG+AGG | + | chr8_3:21361211-21361230 | None:intergenic | 30.0% |
| ! | CACTTGTGTTTTTCTTTTGA+AGG | + | chr8_3:21361214-21361233 | None:intergenic | 30.0% |
| !!! | TGAAGAAATGCTTCGTTTTT+TGG | - | chr8_3:21361578-21361597 | Msa1281660:intron | 30.0% |
| TTTGGAAAATGTAATGTACC+TGG | + | chr8_3:21361860-21361879 | None:intergenic | 30.0% | |
| CAATGGATATTAATGCAAGT+AGG | - | chr8_3:21361947-21361966 | Msa1281660:intron | 30.0% | |
| AGACTAAAACGATTAACACA+TGG | + | chr8_3:21362043-21362062 | None:intergenic | 30.0% | |
| ATTAGAGAAAGACAAATAGG+CGG | - | chr8_3:21362077-21362096 | Msa1281660:intron | 30.0% | |
| ACTAGTAGAGTCAACAAAAT+TGG | + | chr8_3:21362123-21362142 | None:intergenic | 30.0% | |
| ACTAGTACTAACACATTTGT+TGG | - | chr8_3:21362137-21362156 | Msa1281660:intron | 30.0% | |
| AATGAACTTTCTCCTATGAA+TGG | + | chr8_3:21362185-21362204 | None:intergenic | 30.0% | |
| TCAAAGATCAAAGTGACTAA+TGG | - | chr8_3:21362301-21362320 | Msa1281660:intron | 30.0% | |
| ! | AATTGGTAATTACTACCTAC+AGG | - | chr8_3:21362481-21362500 | Msa1281660:intron | 30.0% |
| TACAGGTTGTGATCTTAATT+GGG | - | chr8_3:21362498-21362517 | Msa1281660:intron | 30.0% | |
| ! | TTTGAGATGTCAAATGAACT+AGG | + | chr8_3:21362530-21362549 | None:intergenic | 30.0% |
| CAATATATGTTTCCATACTG+TGG | - | chr8_3:21362634-21362653 | Msa1281660:intron | 30.0% | |
| ! | TTACTATTCCATTAGTTTCC+AGG | + | chr8_3:21363002-21363021 | None:intergenic | 30.0% |
| GGAAAAACATGTTTGTATAG+TGG | + | chr8_3:21363048-21363067 | None:intergenic | 30.0% | |
| AGATTCCATCATTTCTTCTT+CGG | + | chr8_3:21363284-21363303 | None:intergenic | 30.0% | |
| TAAAGACATATATCGCATCT+TGG | - | chr8_3:21363306-21363325 | Msa1281660:intron | 30.0% | |
| GTCTGTTAAAGACATTTCAT+TGG | - | chr8_3:21363387-21363406 | Msa1281660:intron | 30.0% | |
| ! | AAGCATCGTTCAATTGTTAA+AGG | - | chr8_3:21363491-21363510 | Msa1281660:intron | 30.0% |
| TTGAGCATTTCTCTAAACAA+TGG | - | chr8_3:21363523-21363542 | Msa1281660:intron | 30.0% | |
| ! | AATGGAGACTTTTCGTTTAT+AGG | - | chr8_3:21363541-21363560 | Msa1281660:intron | 30.0% |
| GTAAGAGGAAAGATTGTTAA+AGG | - | chr8_3:21363669-21363688 | Msa1281660:intron | 30.0% | |
| ! | GTTAAAGGAAAGAAAGTATG+AGG | - | chr8_3:21363684-21363703 | Msa1281660:intron | 30.0% |
| GAAAGTGAAAAGAAAGTGAA+AGG | - | chr8_3:21363754-21363773 | Msa1281660:intron | 30.0% | |
| ACTAAGATATCCCTATAAGA+AGG | - | chr8_3:21363804-21363823 | Msa1281660:intron | 30.0% | |
| ! | TTGTAAAGCATTTGCTTTGT+GGG | - | chr8_3:21363977-21363996 | Msa1281660:intron | 30.0% |
| ! | CGCAGAAACATATTTTGTAT+GGG | - | chr8_3:21364056-21364075 | Msa1281660:intron | 30.0% |
| ! | GCAGAAACATATTTTGTATG+GGG | - | chr8_3:21364057-21364076 | Msa1281660:intron | 30.0% |
| TTGACATTCTTTCCTTTGTT+TGG | + | chr8_3:21364124-21364143 | None:intergenic | 30.0% | |
| ! | GTATTTGTGAGTTGAATTTG+AGG | - | chr8_3:21364213-21364232 | Msa1281660:intron | 30.0% |
| !!! | TTGAATTTGAGGGTTTTGAA+GGG | - | chr8_3:21364224-21364243 | Msa1281660:intron | 30.0% |
| CCTATGAAAACATATAGATG+TGG | + | chr8_3:21364376-21364395 | None:intergenic | 30.0% | |
| ! | CCACATCTATATGTTTTCAT+AGG | - | chr8_3:21364373-21364392 | Msa1281660:intron | 30.0% |
| ! | ATATGTTTTCATAGGGAACT+AGG | - | chr8_3:21364381-21364400 | Msa1281660:intron | 30.0% |
| ! | TATGTTTTCATAGGGAACTA+GGG | - | chr8_3:21364382-21364401 | Msa1281660:intron | 30.0% |
| AAATTAGTTCCTTATAGAGC+TGG | + | chr8_3:21364615-21364634 | None:intergenic | 30.0% | |
| !!! | GTTTTTTCTAGAGGAAGTTT+AGG | - | chr8_3:21364655-21364674 | Msa1281660:intron | 30.0% |
| !!! | AATCTAGAGATTGTTTTGAC+CGG | - | chr8_3:21364908-21364927 | Msa1281660:intron | 30.0% |
| ACTGCATAATGTCAAAATTC+TGG | + | chr8_3:21365083-21365102 | None:intergenic | 30.0% | |
| TAATTCCATTGTCAATGACA+TGG | - | chr8_3:21365785-21365804 | Msa1281660:intron | 30.0% | |
| GTTCTTAACGTACCAAAATA+AGG | + | chr8_3:21365812-21365831 | None:intergenic | 30.0% | |
| TACATGGAACATTGACATAA+TGG | - | chr8_3:21365833-21365852 | Msa1281660:intron | 30.0% | |
| TTACCAACAAATGAAGATTG+TGG | + | chr8_3:21365956-21365975 | None:intergenic | 30.0% | |
| CCAATTAAATAACACCTTTC+GGG | - | chr8_3:21366011-21366030 | Msa1281660:intron | 30.0% | |
| GTGTGCATGTTTAAACAAAT+AGG | + | chr8_3:21366283-21366302 | None:intergenic | 30.0% | |
| ! | TGGTACCGAGTTATTATTTA+AGG | + | chr8_3:21366507-21366526 | None:intergenic | 30.0% |
| TTATTTGATCGAGATGTTTC+TGG | + | chr8_3:21366745-21366764 | None:intergenic | 30.0% | |
| !! | TTATTTTGTATGGTGATGCA+TGG | + | chr8_3:21367065-21367084 | None:intergenic | 30.0% |
| ATTCTTCAACTTCTTGATAG+TGG | - | chr8_3:21367152-21367171 | Msa1281660:CDS | 30.0% | |
| AAATACAAATTCTCCTGCAT+CGG | + | chr8_3:21367247-21367266 | None:intergenic | 30.0% | |
| TTGATGAAACAAAGGAACTA+AGG | + | chr8_3:21367372-21367391 | None:intergenic | 30.0% | |
| ! | TCCTTTGTTTCATCAATTTC+AGG | - | chr8_3:21367376-21367395 | Msa1281660:CDS | 30.0% |
| TCCTGAAATTGATGAAACAA+AGG | + | chr8_3:21367380-21367399 | None:intergenic | 30.0% | |
| ! | GTTCTTCTTTTTCTGTTATC+TGG | + | chr8_3:21367861-21367880 | None:intergenic | 30.0% |
| AGGTTAATGTCATAGTGTAA+CGG | - | chr8_3:21368144-21368163 | Msa1281660:intron | 30.0% | |
| !! | CGGTACATTAAAATTTTGGT+AGG | + | chr8_3:21368220-21368239 | None:intergenic | 30.0% |
| ACTTGTAAAATTACTCTGTC+AGG | - | chr8_3:21368713-21368732 | Msa1281660:CDS | 30.0% | |
| ATGAAATGTATAGAGATGAC+TGG | - | chr8_3:21368829-21368848 | Msa1281660:CDS | 30.0% | |
| TGAAATGTATAGAGATGACT+GGG | - | chr8_3:21368830-21368849 | Msa1281660:CDS | 30.0% | |
| TATCACGTTCTTAACATGCA+TGG | + | chr8_3:21361178-21361197 | None:intergenic | 35.0% | |
| !!! | GACTGTTTTAGTCAAAGTTC+AGG | + | chr8_3:21361239-21361258 | None:intergenic | 35.0% |
| ATGGTTAAAGTTGCAGTGAT+CGG | - | chr8_3:21361285-21361304 | Msa1281660:three_prime_UTR | 35.0% | |
| !!! | TGTTTTTGGAGTGTATATCC+AGG | + | chr8_3:21361403-21361422 | None:intergenic | 35.0% |
| AAATCTTCCAAGGCAAATCA+TGG | - | chr8_3:21361494-21361513 | Msa1281660:intron | 35.0% | |
| AATCTTCCAAGGCAAATCAT+GGG | - | chr8_3:21361495-21361514 | Msa1281660:intron | 35.0% | |
| !!! | CGTTTTTTGGAAGAATTTGC+AGG | - | chr8_3:21361591-21361610 | Msa1281660:intron | 35.0% |
| !! | CATGTCTTGGTTCTACAAAA+TGG | + | chr8_3:21361758-21361777 | None:intergenic | 35.0% |
| ATTAACACATGGAACAATCC+TGG | + | chr8_3:21362032-21362051 | None:intergenic | 35.0% | |
| GACTCTACTAAACCATTCAT+AGG | - | chr8_3:21362170-21362189 | Msa1281660:intron | 35.0% | |
| ! | TATAGCGCAAACCATCATTT+TGG | + | chr8_3:21362403-21362422 | None:intergenic | 35.0% |
| CAATTAAGATCACAACCTGT+AGG | + | chr8_3:21362499-21362518 | None:intergenic | 35.0% | |
| CTACAGGTTGTGATCTTAAT+TGG | - | chr8_3:21362497-21362516 | Msa1281660:intron | 35.0% | |
| GACATCTCAAAAGATATTGC+AGG | - | chr8_3:21362539-21362558 | Msa1281660:intron | 35.0% | |
| AAAACCGAATCCACTATTGA+AGG | - | chr8_3:21362589-21362608 | Msa1281660:intron | 35.0% | |
| AAACCGAATCCACTATTGAA+GGG | - | chr8_3:21362590-21362609 | Msa1281660:intron | 35.0% | |
| !! | ATACCCTTCAATAGTGGATT+CGG | + | chr8_3:21362596-21362615 | None:intergenic | 35.0% |
| AACTTCATACCCTTCAATAG+TGG | + | chr8_3:21362602-21362621 | None:intergenic | 35.0% | |
| ! | ACTATTGAAGGGTATGAAGT+TGG | - | chr8_3:21362601-21362620 | Msa1281660:intron | 35.0% |
| ATGTGTATATGAAGATGGCT+TGG | - | chr8_3:21362776-21362795 | Msa1281660:intron | 35.0% | |
| ATGCCATAATTCACTGTACA+GGG | - | chr8_3:21362832-21362851 | Msa1281660:intron | 35.0% | |
| TTACCCTGTACAGTGAATTA+TGG | + | chr8_3:21362838-21362857 | None:intergenic | 35.0% | |
| ATTCCTTTCCTGGAAACTAA+TGG | - | chr8_3:21362991-21363010 | Msa1281660:intron | 35.0% | |
| ! | ATTCCATTAGTTTCCAGGAA+AGG | + | chr8_3:21362997-21363016 | None:intergenic | 35.0% |
| !! | TAATATTTCTAGACTTGCCG+TGG | - | chr8_3:21363178-21363197 | Msa1281660:intron | 35.0% |
| TAATTGAGTTACAAGCCAAG+TGG | - | chr8_3:21363221-21363240 | Msa1281660:intron | 35.0% | |
| AATTGAGTTACAAGCCAAGT+GGG | - | chr8_3:21363222-21363241 | Msa1281660:intron | 35.0% | |
| CATCGTTCAATTGTTAAAGG+TGG | - | chr8_3:21363494-21363513 | Msa1281660:intron | 35.0% | |
| ATCTTTCCTCTCACTTTCTT+TGG | + | chr8_3:21363648-21363667 | None:intergenic | 35.0% | |
| ! | GAAAGTATGAGGAAAGTGAA+TGG | - | chr8_3:21363695-21363714 | Msa1281660:intron | 35.0% |
| ! | GTTGTAAAGCATTTGCTTTG+TGG | - | chr8_3:21363976-21363995 | Msa1281660:intron | 35.0% |
| ! | GCGCAGAAACATATTTTGTA+TGG | - | chr8_3:21364055-21364074 | Msa1281660:intron | 35.0% |
| ! | TTTGGAACCACATCAAAATG+GGG | + | chr8_3:21364106-21364125 | None:intergenic | 35.0% |
| ! | GTTTGGAACCACATCAAAAT+GGG | + | chr8_3:21364107-21364126 | None:intergenic | 35.0% |
| ! | TGTTTGGAACCACATCAAAA+TGG | + | chr8_3:21364108-21364127 | None:intergenic | 35.0% |
| TTTGATGTGGTTCCAAACAA+AGG | - | chr8_3:21364109-21364128 | Msa1281660:intron | 35.0% | |
| GAAGAAGGATAGAAAGTAGT+AGG | + | chr8_3:21364148-21364167 | None:intergenic | 35.0% | |
| CTAGTAGGAAAGATTGAAGA+AGG | + | chr8_3:21364163-21364182 | None:intergenic | 35.0% | |
| !!! | TTGTTTTGGGTGAAACTAGT+AGG | + | chr8_3:21364178-21364197 | None:intergenic | 35.0% |
| !! | CCTAATGGTCTGTTTGTTTT+GGG | + | chr8_3:21364191-21364210 | None:intergenic | 35.0% |
| CCAAAACAAACAGACCATTA+GGG | - | chr8_3:21364189-21364208 | Msa1281660:intron | 35.0% | |
| AACTCACAAATACACCCTAA+TGG | + | chr8_3:21364206-21364225 | None:intergenic | 35.0% | |
| !! | GTTGAATTTGAGGGTTTTGA+AGG | - | chr8_3:21364223-21364242 | Msa1281660:intron | 35.0% |
| !! | GAACTATTATCGAGTTGGTT+CGG | + | chr8_3:21364419-21364438 | None:intergenic | 35.0% |
| GAACCAACTCGATAATAGTT+CGG | - | chr8_3:21364418-21364437 | Msa1281660:intron | 35.0% | |
| GACAATTAACTCGTTGAACT+TGG | - | chr8_3:21364451-21364470 | Msa1281660:intron | 35.0% | |
| TGACTCGATAAGAATTGACT+CGG | + | chr8_3:21364558-21364577 | None:intergenic | 35.0% | |
| TGATGTGACACGTTAATATG+CGG | + | chr8_3:21364798-21364817 | None:intergenic | 35.0% | |
| AATAAAATGTATCCCGTGCT+TGG | + | chr8_3:21364986-21365005 | None:intergenic | 35.0% | |
| CAACTAAATGATGACCTTGA+AGG | + | chr8_3:21365350-21365369 | None:intergenic | 35.0% | |
| !! | ATTTTGGGTCAAGATTGCTT+TGG | - | chr8_3:21365576-21365595 | Msa1281660:intron | 35.0% |
| TTTATTGAAGGGTCAATACG+TGG | - | chr8_3:21365732-21365751 | Msa1281660:intron | 35.0% | |
| !! | CAATGACATGGACCTTATTT+TGG | - | chr8_3:21365797-21365816 | Msa1281660:intron | 35.0% |
| TGGTACGTTAAGAACATACA+TGG | - | chr8_3:21365817-21365836 | Msa1281660:intron | 35.0% | |
| GTTCCACAATCTTCATTTGT+TGG | - | chr8_3:21365950-21365969 | Msa1281660:intron | 35.0% | |
| ! | GTTGGTAAGATTCTCTTCTT+AGG | - | chr8_3:21365968-21365987 | Msa1281660:intron | 35.0% |
| !! | CCCGAAAGGTGTTATTTAAT+TGG | + | chr8_3:21366014-21366033 | None:intergenic | 35.0% |
| AAATTGTCTTCGAAGCATAC+CGG | - | chr8_3:21366229-21366248 | Msa1281660:intron | 35.0% | |
| TGAGTGTTAGATTCAACTCT+AGG | + | chr8_3:21366478-21366497 | None:intergenic | 35.0% | |
| AATGAGATTGCACAATTGGT+TGG | + | chr8_3:21366527-21366546 | None:intergenic | 35.0% | |
| AACCAATTGTGCAATCTCAT+TGG | - | chr8_3:21366526-21366545 | Msa1281660:intron | 35.0% | |
| ACCAATTGTGCAATCTCATT+GGG | - | chr8_3:21366527-21366546 | Msa1281660:intron | 35.0% | |
| TCATTGGGTAAATCATGAGA+TGG | - | chr8_3:21366542-21366561 | Msa1281660:intron | 35.0% | |
| GTTCAAAATCAAGATTCGAG+TGG | + | chr8_3:21366797-21366816 | None:intergenic | 35.0% | |
| ! | GGCTCATCTTTTATTGTCTT+GGG | + | chr8_3:21367044-21367063 | None:intergenic | 35.0% |
| ! | TGGCTCATCTTTTATTGTCT+TGG | + | chr8_3:21367045-21367064 | None:intergenic | 35.0% |
| AGTTTCTCAAACTTACTCCT+AGG | + | chr8_3:21367179-21367198 | None:intergenic | 35.0% | |
| AATACAAATTCTCCTGCATC+GGG | + | chr8_3:21367246-21367265 | None:intergenic | 35.0% | |
| TTCATCAATTTCAGGATCGA+AGG | - | chr8_3:21367384-21367403 | Msa1281660:CDS | 35.0% | |
| ! | GAAAATGCATTTTGCAATGC+TGG | - | chr8_3:21367421-21367440 | Msa1281660:CDS | 35.0% |
| ! | AACAGCAATTTGAGATTCAC+AGG | - | chr8_3:21367597-21367616 | Msa1281660:CDS | 35.0% |
| !! | TCTTTTTGGAGAGTATGTTG+AGG | + | chr8_3:21367644-21367663 | None:intergenic | 35.0% |
| AAGAAAACAATCGTGGACAT+TGG | + | chr8_3:21367745-21367764 | None:intergenic | 35.0% | |
| ! | AATGTCCACGATTGTTTTCT+TGG | - | chr8_3:21367744-21367763 | Msa1281660:intron | 35.0% |
| !!! | TTTTGGAACAAATGCCAAGT+AGG | - | chr8_3:21368562-21368581 | Msa1281660:CDS | 35.0% |
| CACATCATCATATTCCTACT+TGG | + | chr8_3:21368579-21368598 | None:intergenic | 35.0% | |
| ! | CAAGTAGGAATATGATGATG+TGG | - | chr8_3:21368577-21368596 | Msa1281660:CDS | 35.0% |
| !! | ATCTTTAGAGGAGAGGATTT+TGG | - | chr8_3:21368602-21368621 | Msa1281660:CDS | 35.0% |
| TTGTCCATCCAATCTTCTAA+CGG | + | chr8_3:21368780-21368799 | None:intergenic | 35.0% | |
| TTGGATGGACAATATGTTGA+TGG | - | chr8_3:21368788-21368807 | Msa1281660:CDS | 35.0% | |
| ATGACTGGGATGATAACTAT+TGG | - | chr8_3:21368844-21368863 | Msa1281660:CDS | 35.0% | |
| TGACTGGGATGATAACTATT+GGG | - | chr8_3:21368845-21368864 | Msa1281660:CDS | 35.0% | |
| ! | AGCTGATTCATTCTGAATGA+TGG | + | chr8_3:21368874-21368893 | None:intergenic | 35.0% |
| GAATGAATCAGCTTCCTAAA+AGG | - | chr8_3:21368881-21368900 | Msa1281660:CDS | 35.0% | |
| TGCTTGTCTACTAATCACGA+TGG | - | chr8_3:21361266-21361285 | Msa1281660:three_prime_UTR | 40.0% | |
| TGGGTCTATACTAAGAGGAT+CGG | + | chr8_3:21361430-21361449 | None:intergenic | 40.0% | |
| ! | TGTGAACTGTTTCTCTGGTT+GGG | + | chr8_3:21361449-21361468 | None:intergenic | 40.0% |
| GAAGATTTGTGCGTAAAGAG+TGG | + | chr8_3:21361482-21361501 | None:intergenic | 40.0% | |
| CTTTACGCACAAATCTTCCA+AGG | - | chr8_3:21361484-21361503 | Msa1281660:intron | 40.0% | |
| ! | AAGAATCCCATGATTTGCCT+TGG | + | chr8_3:21361504-21361523 | None:intergenic | 40.0% |
| GAAGAATTTGCAGGTGAGTT+TGG | - | chr8_3:21361600-21361619 | Msa1281660:intron | 40.0% | |
| ! | CAGGTGAGTTTGGAATTCAT+GGG | - | chr8_3:21361610-21361629 | Msa1281660:intron | 40.0% |
| TCACCACCTCTGTTTCAAAT+CGG | + | chr8_3:21361641-21361660 | None:intergenic | 40.0% | |
| TGGTGAAAGTTGAGAGGAAA+GGG | - | chr8_3:21361655-21361674 | Msa1281660:intron | 40.0% | |
| !! | GAGTCAAGAAGTGTTTGAAG+CGG | - | chr8_3:21361716-21361735 | Msa1281660:intron | 40.0% |
| TGTAGAACCAAGACATGCTT+TGG | - | chr8_3:21361761-21361780 | Msa1281660:intron | 40.0% | |
| ! | CCACGAAAGTTTTCAATACC+AGG | + | chr8_3:21361789-21361808 | None:intergenic | 40.0% |
| ! | CCTGGTATTGAAAACTTTCG+TGG | - | chr8_3:21361786-21361805 | Msa1281660:intron | 40.0% |
| AGACTTCTGATGCGTTATCA+GGG | + | chr8_3:21362233-21362252 | None:intergenic | 40.0% | |
| TAGACTTCTGATGCGTTATC+AGG | + | chr8_3:21362234-21362253 | None:intergenic | 40.0% | |
| ACTTCCAGAGACCAAAATGA+TGG | - | chr8_3:21362389-21362408 | Msa1281660:intron | 40.0% | |
| !! | CAAACCATCATTTTGGTCTC+TGG | + | chr8_3:21362396-21362415 | None:intergenic | 40.0% |
| GTTGTGATCTTAATTGGGCT+AGG | - | chr8_3:21362503-21362522 | Msa1281660:intron | 40.0% | |
| AGATATTGCAGGAGTTGCAA+AGG | - | chr8_3:21362550-21362569 | Msa1281660:intron | 40.0% | |
| GGTATGAAGTTGGAAAATGC+TGG | - | chr8_3:21362611-21362630 | Msa1281660:intron | 40.0% | |
| GATGCCATAATTCACTGTAC+AGG | - | chr8_3:21362831-21362850 | Msa1281660:intron | 40.0% | |
| CGTTGAAGGTGAGAAAATGT+TGG | + | chr8_3:21362870-21362889 | None:intergenic | 40.0% | |
| CAAATACCACATTCCTTTCC+TGG | - | chr8_3:21362981-21363000 | Msa1281660:intron | 40.0% | |
| TAGTTTCCAGGAAAGGAATG+TGG | + | chr8_3:21362990-21363009 | None:intergenic | 40.0% | |
| ACGATTGAAGATAATCGCGT+TGG | - | chr8_3:21363021-21363040 | Msa1281660:intron | 40.0% | |
| CGATTGAAGATAATCGCGTT+GGG | - | chr8_3:21363022-21363041 | Msa1281660:intron | 40.0% | |
| AAACCAATGAAAGAGAGCCA+TGG | + | chr8_3:21363084-21363103 | None:intergenic | 40.0% | |
| TAGAAATAGTTTCCTGGCCA+CGG | + | chr8_3:21363198-21363217 | None:intergenic | 40.0% | |
| TAAAACTCTTGCAACCCACT+TGG | + | chr8_3:21363239-21363258 | None:intergenic | 40.0% | |
| !! | TGGGTTGCAAGAGTTTTATC+TGG | - | chr8_3:21363241-21363260 | Msa1281660:intron | 40.0% |
| ACCTACCGAAGAAGAAATGA+TGG | - | chr8_3:21363276-21363295 | Msa1281660:intron | 40.0% | |
| TCCATCATTTCTTCTTCGGT+AGG | + | chr8_3:21363280-21363299 | None:intergenic | 40.0% | |
| AGACATATATCGCATCTTGG+AGG | - | chr8_3:21363309-21363328 | Msa1281660:intron | 40.0% | |
| ATGGAATGAGTGTAACGCTT+GGG | + | chr8_3:21363346-21363365 | None:intergenic | 40.0% | |
| TATGGAATGAGTGTAACGCT+TGG | + | chr8_3:21363347-21363366 | None:intergenic | 40.0% | |
| AAATACCTGAAACGGACGTA+TGG | + | chr8_3:21363365-21363384 | None:intergenic | 40.0% | |
| ACAGACGCAAATACCTGAAA+CGG | + | chr8_3:21363373-21363392 | None:intergenic | 40.0% | |
| TGGTCAAAATAGAGTCCCTT+AGG | - | chr8_3:21363608-21363627 | Msa1281660:intron | 40.0% | |
| GGTCAAAATAGAGTCCCTTA+GGG | - | chr8_3:21363609-21363628 | Msa1281660:intron | 40.0% | |
| GTGAGAGGAAAGATTGTAAG+AGG | - | chr8_3:21363654-21363673 | Msa1281660:intron | 40.0% | |
| ! | AATATGTTTCTGCGCTCTTG+AGG | + | chr8_3:21364050-21364069 | None:intergenic | 40.0% |
| TTGGAACCACATCAAAATGG+GGG | + | chr8_3:21364105-21364124 | None:intergenic | 40.0% | |
| CCCAAAACAAACAGACCATT+AGG | - | chr8_3:21364188-21364207 | Msa1281660:intron | 40.0% | |
| ! | CCCTAATGGTCTGTTTGTTT+TGG | + | chr8_3:21364192-21364211 | None:intergenic | 40.0% |
| CAATGGCATTGCACATGTAT+TGG | - | chr8_3:21364327-21364346 | Msa1281660:intron | 40.0% | |
| GTTCCGAACTATTATCGAGT+TGG | + | chr8_3:21364424-21364443 | None:intergenic | 40.0% | |
| ! | CAGTTCAAGTTCAGCTCATT+TGG | + | chr8_3:21364485-21364504 | None:intergenic | 40.0% |
| GACTCATTTCCAGCTCTATA+AGG | - | chr8_3:21364603-21364622 | Msa1281660:intron | 40.0% | |
| AAATGATGACCTTGAAGGAG+AGG | + | chr8_3:21365345-21365364 | None:intergenic | 40.0% | |
| TCATTTAGTTGTCGTGTGAG+TGG | - | chr8_3:21365359-21365378 | Msa1281660:intron | 40.0% | |
| AGATGAGGATAGAGTCGATT+TGG | - | chr8_3:21365412-21365431 | Msa1281660:intron | 40.0% | |
| ! | CGGGTCTTTTGACAAAAAGA+AGG | - | chr8_3:21365550-21365569 | Msa1281660:intron | 40.0% |
| ! | GTGGTCTTGAGTTACATTTC+TGG | - | chr8_3:21365598-21365617 | Msa1281660:intron | 40.0% |
| !! | AGTTACATTTCTGGCCTAGA+AGG | - | chr8_3:21365607-21365626 | Msa1281660:intron | 40.0% |
| AAGGTCCATGTCATTGACAA+TGG | + | chr8_3:21365793-21365812 | None:intergenic | 40.0% | |
| AACTGACGCAATTGTTCAAC+CGG | + | chr8_3:21365930-21365949 | None:intergenic | 40.0% | |
| GGTAAGATTCTCTTCTTAGG+AGG | - | chr8_3:21365971-21365990 | Msa1281660:intron | 40.0% | |
| !! | TCCATAGATGATGGAGTTGT+GGG | - | chr8_3:21366034-21366053 | Msa1281660:intron | 40.0% |
| TTGAACCTGCAATTCATAGC+CGG | + | chr8_3:21366251-21366270 | None:intergenic | 40.0% | |
| TTAAAAAGTTGGGACACTCG+AGG | + | chr8_3:21366390-21366409 | None:intergenic | 40.0% | |
| ACCCAATGAGATTGCACAAT+TGG | + | chr8_3:21366531-21366550 | None:intergenic | 40.0% | |
| !! | ATTCGAGTGGTTGATAACAG+CGG | + | chr8_3:21366784-21366803 | None:intergenic | 40.0% |
| TTGAACGTGCATCAAACAGT+TGG | - | chr8_3:21366811-21366830 | Msa1281660:intron | 40.0% | |
| AGATTATTGATGGGGATGGA+TGG | + | chr8_3:21367010-21367029 | None:intergenic | 40.0% | |
| AGTGAGATTATTGATGGGGA+TGG | + | chr8_3:21367014-21367033 | None:intergenic | 40.0% | |
| !! | AACTTCTTGATAGTGGTCCT+AGG | - | chr8_3:21367159-21367178 | Msa1281660:CDS | 40.0% |
| TTCTCGCATGCATGTAAATG+AGG | + | chr8_3:21367202-21367221 | None:intergenic | 40.0% | |
| TTTCGCCAAGAAAACAATCG+TGG | + | chr8_3:21367752-21367771 | None:intergenic | 40.0% | |
| GATGATGTGGACATCTTTAG+AGG | - | chr8_3:21368590-21368609 | Msa1281660:CDS | 40.0% | |
| !!! | AGAGGAGAGGATTTTGGAAT+AGG | - | chr8_3:21368608-21368627 | Msa1281660:CDS | 40.0% |
| TGACTACAAACAATGGCTAG+CGG | - | chr8_3:21368737-21368756 | Msa1281660:CDS | 40.0% | |
| ! | AGAGGATCGGAGTCTGTTTT+TGG | + | chr8_3:21361417-21361436 | None:intergenic | 45.0% |
| CTGGTTGGGTCTATACTAAG+AGG | + | chr8_3:21361435-21361454 | None:intergenic | 45.0% | |
| ! | CTGTGAACTGTTTCTCTGGT+TGG | + | chr8_3:21361450-21361469 | None:intergenic | 45.0% |
| ! | ACTGCTGTGAACTGTTTCTC+TGG | + | chr8_3:21361454-21361473 | None:intergenic | 45.0% |
| AGGATTCTCGCTTGGACAAA+GGG | + | chr8_3:21361533-21361552 | None:intergenic | 45.0% | |
| ! | CGAAGCATTTCTTCATGACC+CGG | + | chr8_3:21361573-21361592 | None:intergenic | 45.0% |
| ! | GCAGGTGAGTTTGGAATTCA+TGG | - | chr8_3:21361609-21361628 | Msa1281660:intron | 45.0% |
| ! | GTTGACCCGATTTGAAACAG+AGG | - | chr8_3:21361632-21361651 | Msa1281660:intron | 45.0% |
| CACCACCTCTGTTTCAAATC+GGG | + | chr8_3:21361640-21361659 | None:intergenic | 45.0% | |
| GTGGTGAAAGTTGAGAGGAA+AGG | - | chr8_3:21361654-21361673 | Msa1281660:intron | 45.0% | |
| GAAAGTTGAGAGGAAAGGGA+AGG | - | chr8_3:21361659-21361678 | Msa1281660:intron | 45.0% | |
| GAAGCGGTTGTTGTATGTTC+TGG | - | chr8_3:21361732-21361751 | Msa1281660:intron | 45.0% | |
| TCCTCACTCTTTCAAAGACC+AGG | - | chr8_3:21361839-21361858 | Msa1281660:intron | 45.0% | |
| ! | ACCTGGTCTTTGAAAGAGTG+AGG | + | chr8_3:21361843-21361862 | None:intergenic | 45.0% |
| GACGACGTGTACTAATGAGA+AGG | + | chr8_3:21362262-21362281 | None:intergenic | 45.0% | |
| ! | GGCTTGGTTGTCTTTGAAGA+TGG | - | chr8_3:21362792-21362811 | Msa1281660:intron | 45.0% |
| ! | ACATGTTTTTCCTCCTTCGC+TGG | - | chr8_3:21363056-21363075 | Msa1281660:intron | 45.0% |
| TCATTCCATACGTCCGTTTC+AGG | - | chr8_3:21363357-21363376 | Msa1281660:intron | 45.0% | |
| GTGATCCAAACACACCCTAA+GGG | + | chr8_3:21363626-21363645 | None:intergenic | 45.0% | |
| GGATCACCAAAGAAAGTGAG+AGG | - | chr8_3:21363639-21363658 | Msa1281660:intron | 45.0% | |
| !! | GAGGAAAGGTACTGTTGACT+GGG | + | chr8_3:21364083-21364102 | None:intergenic | 45.0% |
| ACATCAAAATGGGGGAGGAA+AGG | + | chr8_3:21364097-21364116 | None:intergenic | 45.0% | |
| !! | TTTCCTCCCCCATTTTGATG+TGG | - | chr8_3:21364096-21364115 | Msa1281660:intron | 45.0% |
| !! | ACATGGAAAGTAGTGGACGA+CGG | + | chr8_3:21365317-21365336 | None:intergenic | 45.0% |
| GGACACAACATGGAAAGTAG+TGG | + | chr8_3:21365324-21365343 | None:intergenic | 45.0% | |
| TTGAAGGAGAGGACACAACA+TGG | + | chr8_3:21365334-21365353 | None:intergenic | 45.0% | |
| ATGTTGTGTCCTCTCCTTCA+AGG | - | chr8_3:21365333-21365352 | Msa1281660:intron | 45.0% | |
| CTCTATCCTCATCTGTGAAG+TGG | + | chr8_3:21365406-21365425 | None:intergenic | 45.0% | |
| GTGTTGTGAAACAAGTCACG+GGG | + | chr8_3:21365491-21365510 | None:intergenic | 45.0% | |
| CGTGTTGTGAAACAAGTCAC+GGG | + | chr8_3:21365492-21365511 | None:intergenic | 45.0% | |
| CCGTGTTGTGAAACAAGTCA+CGG | + | chr8_3:21365493-21365512 | None:intergenic | 45.0% | |
| !! | CCGTGACTTGTTTCACAACA+CGG | - | chr8_3:21365490-21365509 | Msa1281660:intron | 45.0% |
| TTGGGTCAAGATTGCTTTGG+TGG | - | chr8_3:21365579-21365598 | Msa1281660:intron | 45.0% | |
| !! | GTCCATAGATGATGGAGTTG+TGG | - | chr8_3:21366033-21366052 | Msa1281660:intron | 45.0% |
| TCCCACAACTCCATCATCTA+TGG | + | chr8_3:21366038-21366057 | None:intergenic | 45.0% | |
| ATGTTGTGCATGTCACACCT+AGG | + | chr8_3:21366910-21366929 | None:intergenic | 45.0% | |
| TTATTGATGGGGATGGATGG+TGG | + | chr8_3:21367007-21367026 | None:intergenic | 45.0% | |
| ACATGCATGCGAGAAGAATC+TGG | - | chr8_3:21367207-21367226 | Msa1281660:CDS | 45.0% | |
| TGCGAGAAGAATCTGGTAAC+TGG | - | chr8_3:21367214-21367233 | Msa1281660:CDS | 45.0% | |
| AGGATCGAAGGTGATTCTAG+TGG | - | chr8_3:21367396-21367415 | Msa1281660:CDS | 45.0% | |
| TGCTGTTGCAGCCATTATGT+TGG | + | chr8_3:21367584-21367603 | None:intergenic | 45.0% | |
| TTGTGAGAGTTGTTCGTGCT+TGG | + | chr8_3:21367722-21367741 | None:intergenic | 45.0% | |
| ! | TGTGGACATCTTTAGAGGAG+AGG | - | chr8_3:21368595-21368614 | Msa1281660:CDS | 45.0% |
| GTCAGGCTGACTACAAACAA+TGG | - | chr8_3:21368730-21368749 | Msa1281660:CDS | 45.0% | |
| TCCATCCAATCTTCTAACGG+AGG | + | chr8_3:21368777-21368796 | None:intergenic | 45.0% | |
| !! | TATGAATAATTAATATATTA+TGG | - | chr8_3:21365247-21365266 | Msa1281660:intron | 5.0% |
| !! | ATGAATAATTAATATATTAT+GGG | - | chr8_3:21365248-21365267 | Msa1281660:intron | 5.0% |
| !!! | TTTAAATATTTTTTTATTGA+AGG | - | chr8_3:21365720-21365739 | Msa1281660:intron | 5.0% |
| !!! | TTAAATATTTTTTTATTGAA+GGG | - | chr8_3:21365721-21365740 | Msa1281660:intron | 5.0% |
| !!! | ATAAATTATATTTTGAATTT+TGG | + | chr8_3:21368171-21368190 | None:intergenic | 5.0% |
| !! | ATTTAATGTTAAATAAAAAA+CGG | - | chr8_3:21368487-21368506 | Msa1281660:CDS | 5.0% |
| TTCCTGTTGTAGCTCCTTGG+CGG | + | chr8_3:21361334-21361353 | None:intergenic | 50.0% | |
| TCTCGAAAACGACGACGTTG+TGG | + | chr8_3:21361359-21361378 | None:intergenic | 50.0% | |
| TTCGAGAAGAACAACCGCGT+TGG | - | chr8_3:21361372-21361391 | Msa1281660:CDS | 50.0% | |
| ATATCCAGGTTCCTCCAACG+CGG | + | chr8_3:21361389-21361408 | None:intergenic | 50.0% | |
| CAGGATTCTCGCTTGGACAA+AGG | + | chr8_3:21361534-21361553 | None:intergenic | 50.0% | |
| CTGTGATCCGAGAACGTTTC+CGG | - | chr8_3:21361551-21361570 | Msa1281660:intron | 50.0% | |
| TGTGATCCGAGAACGTTTCC+GGG | - | chr8_3:21361552-21361571 | Msa1281660:intron | 50.0% | |
| TCATGACCCGGAAACGTTCT+CGG | + | chr8_3:21361561-21361580 | None:intergenic | 50.0% | |
| ! | GACCCGATTTGAAACAGAGG+TGG | - | chr8_3:21361635-21361654 | Msa1281660:intron | 50.0% |
| CAGAGGTGGTGAAAGTTGAG+AGG | - | chr8_3:21361649-21361668 | Msa1281660:intron | 50.0% | |
| TTGAGAGGAAAGGGAAGGAC+TGG | - | chr8_3:21361664-21361683 | Msa1281660:intron | 50.0% | |
| TGAGAGGAAAGGGAAGGACT+GGG | - | chr8_3:21361665-21361684 | Msa1281660:intron | 50.0% | |
| AGGACTGGGTTGTTGAGTCT+AGG | - | chr8_3:21361679-21361698 | Msa1281660:intron | 50.0% | |
| GGACTGGGTTGTTGAGTCTA+GGG | - | chr8_3:21361680-21361699 | Msa1281660:intron | 50.0% | |
| GACTGGGTTGTTGAGTCTAG+GGG | - | chr8_3:21361681-21361700 | Msa1281660:intron | 50.0% | |
| CCAGGAACCAAAGCATGTCT+TGG | + | chr8_3:21361771-21361790 | None:intergenic | 50.0% | |
| ! | CCAAGACATGCTTTGGTTCC+TGG | - | chr8_3:21361768-21361787 | Msa1281660:intron | 50.0% |
| ! | GCGGTTGATGTGTGTTCTCA+TGG | - | chr8_3:21362096-21362115 | Msa1281660:intron | 50.0% |
| GCTCCATGGCTCTCTTTCAT+TGG | - | chr8_3:21363078-21363097 | Msa1281660:intron | 50.0% | |
| AGAGTCCCTTAGGGTGTGTT+TGG | - | chr8_3:21363618-21363637 | Msa1281660:intron | 50.0% | |
| GGTGATCCAAACACACCCTA+AGG | + | chr8_3:21363627-21363646 | None:intergenic | 50.0% | |
| GCTCTTGAGGATGGAAAGCA+TGG | + | chr8_3:21364037-21364056 | None:intergenic | 50.0% | |
| ! | TGTTTCTGCGCTCTTGAGGA+TGG | + | chr8_3:21364046-21364065 | None:intergenic | 50.0% |
| !! | GGAGGAAAGGTACTGTTGAC+TGG | + | chr8_3:21364084-21364103 | None:intergenic | 50.0% |
| GAACCACATCAAAATGGGGG+AGG | + | chr8_3:21364102-21364121 | None:intergenic | 50.0% | |
| AATGTATCCCGTGCTTGGCA+CGG | + | chr8_3:21364981-21365000 | None:intergenic | 50.0% | |
| !! | AAAGTAGTGGACGACGGCTA+GGG | + | chr8_3:21365311-21365330 | None:intergenic | 50.0% |
| TAGTTGTCGTGTGAGTGGTG+TGG | - | chr8_3:21365364-21365383 | Msa1281660:intron | 50.0% | |
| GTTGCACCACTTCACAGATG+AGG | - | chr8_3:21365397-21365416 | Msa1281660:intron | 50.0% | |
| ATGAACGAGCCCAAATCGAC+CGG | + | chr8_3:21365452-21365471 | None:intergenic | 50.0% | |
| TTGGGCTCGTTCATAGTCAC+TGG | - | chr8_3:21365458-21365477 | Msa1281660:intron | 50.0% | |
| ! | CGTTCTCACTTGGTGGTTCA+AGG | - | chr8_3:21365519-21365538 | Msa1281660:intron | 50.0% |
| GGTGGTTCAAGGTCTTAGTG+CGG | - | chr8_3:21365530-21365549 | Msa1281660:intron | 50.0% | |
| GTGGTTCAAGGTCTTAGTGC+GGG | - | chr8_3:21365531-21365550 | Msa1281660:intron | 50.0% | |
| CCATCATCTATGGACCCGAA+AGG | + | chr8_3:21366028-21366047 | None:intergenic | 50.0% | |
| ! | CCTTTCGGGTCCATAGATGA+TGG | - | chr8_3:21366025-21366044 | Msa1281660:intron | 50.0% |
| ! | GCATACCGGCTATGAATTGC+AGG | - | chr8_3:21366243-21366262 | Msa1281660:intron | 50.0% |
| GGTGTGACATGCACAACATG+AGG | - | chr8_3:21366911-21366930 | Msa1281660:CDS | 50.0% | |
| AACTGGATCAATCCCGATGC+AGG | - | chr8_3:21367231-21367250 | Msa1281660:intron | 50.0% | |
| AATGGCTAGCGGCACAGATT+GGG | - | chr8_3:21368748-21368767 | Msa1281660:CDS | 50.0% | |
| GGTTGCCTCCGTTAGAAGAT+TGG | - | chr8_3:21368769-21368788 | Msa1281660:CDS | 50.0% | |
| GCCTCCGTTAGAAGATTGGA+TGG | - | chr8_3:21368773-21368792 | Msa1281660:CDS | 50.0% | |
| AAAGTTGCAGTGATCGGCGC+CGG | - | chr8_3:21361291-21361310 | Msa1281660:three_prime_UTR | 55.0% | |
| GCCAAGGAGCTACAACAGGA+AGG | - | chr8_3:21361333-21361352 | Msa1281660:CDS | 55.0% | |
| GCCTTCCTGTTGTAGCTCCT+TGG | + | chr8_3:21361337-21361356 | None:intergenic | 55.0% | |
| GAGAAGAACAACCGCGTTGG+AGG | - | chr8_3:21361375-21361394 | Msa1281660:CDS | 55.0% | |
| CGGATCACAGGATTCTCGCT+TGG | + | chr8_3:21361541-21361560 | None:intergenic | 55.0% | |
| CGGAAACGTTCTCGGATCAC+AGG | + | chr8_3:21361553-21361572 | None:intergenic | 55.0% | |
| TGGGTTGTTGAGTCTAGGGG+AGG | - | chr8_3:21361684-21361703 | Msa1281660:intron | 55.0% | |
| TTTCTAGACTTGCCGTGGCC+AGG | - | chr8_3:21363183-21363202 | Msa1281660:intron | 55.0% | |
| GAGTCGAACTCGTCTGAGCT+CGG | + | chr8_3:21364583-21364602 | None:intergenic | 55.0% | |
| ATGTATCCCGTGCTTGGCAC+GGG | + | chr8_3:21364980-21364999 | None:intergenic | 55.0% | |
| !! | GAAAGTAGTGGACGACGGCT+AGG | + | chr8_3:21365312-21365331 | None:intergenic | 55.0% |
| ACGGTCTCGTCGTTCTCACT+TGG | - | chr8_3:21365509-21365528 | Msa1281660:intron | 55.0% | |
| GTCTCGTCGTTCTCACTTGG+TGG | - | chr8_3:21365512-21365531 | Msa1281660:intron | 55.0% | |
| CAATGGCTAGCGGCACAGAT+TGG | - | chr8_3:21368747-21368766 | Msa1281660:CDS | 55.0% | |
| ACAACCGCGTTGGAGGAACC+TGG | - | chr8_3:21361382-21361401 | Msa1281660:CDS | 60.0% | |
| !! | TTCCTCCTTCGCTGGCTCCA+TGG | - | chr8_3:21363064-21363083 | Msa1281660:intron | 60.0% |
| GTAACGTCCCGTGCCAAGCA+CGG | - | chr8_3:21364970-21364989 | Msa1281660:intron | 60.0% | |
| TAACGTCCCGTGCCAAGCAC+GGG | - | chr8_3:21364971-21364990 | Msa1281660:intron | 60.0% | |
| AAATCGACCGGCGGCAACGT+GGG | + | chr8_3:21365440-21365459 | None:intergenic | 60.0% | |
| ! | ACGTTGCCGCCGGTCGATTT+GGG | - | chr8_3:21365440-21365459 | Msa1281660:intron | 60.0% |
| AACGAGCCCAAATCGACCGG+CGG | + | chr8_3:21365449-21365468 | None:intergenic | 60.0% | |
| GTAGCTCCTTGGCGGCGATG+AGG | + | chr8_3:21361326-21361345 | None:intergenic | 65.0% | |
| CGCCGCCAAGGAGCTACAAC+AGG | - | chr8_3:21361329-21361348 | Msa1281660:CDS | 65.0% | |
| AGCCATGGAGCCAGCGAAGG+AGG | + | chr8_3:21363069-21363088 | None:intergenic | 65.0% | |
| GAGAGCCATGGAGCCAGCGA+AGG | + | chr8_3:21363072-21363091 | None:intergenic | 65.0% | |
| !! | TTTGGTGCCCACGTTGCCGC+CGG | - | chr8_3:21365430-21365449 | Msa1281660:intron | 65.0% |
| CAAATCGACCGGCGGCAACG+TGG | + | chr8_3:21365441-21365460 | None:intergenic | 65.0% | |
| CACGTTGCCGCCGGTCGATT+TGG | - | chr8_3:21365439-21365458 | Msa1281660:intron | 65.0% | |
| ! | GTGATCGGCGCCGGAGTCTC+CGG | - | chr8_3:21361300-21361319 | Msa1281660:three_prime_UTR | 70.0% |
| GGCGATGAGGCCGGAGACTC+CGG | + | chr8_3:21361313-21361332 | None:intergenic | 70.0% | |
| CTCCTTGGCGGCGATGAGGC+CGG | + | chr8_3:21361322-21361341 | None:intergenic | 70.0% | |
| CTCCGGCCTCATCGCCGCCA+AGG | - | chr8_3:21361317-21361336 | Msa1281660:exon | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 21361140 | 21369087 | 21361140 | ID=Msa1281660;Name=Msa1281660 |
| chr8_3 | mRNA | 21361140 | 21369087 | 21361140 | ID=Msa1281660-mRNA-1;Parent=Msa1281660;Name=Msa1281660-mRNA-1;_AED=0.36;_eAED=0.36;_QI=119|0.83|0.85|1|0.83|0.71|7|188|433 |
| chr8_3 | exon | 21361140 | 21361492 | 21361140 | ID=Msa1281660-mRNA-1:exon:7803;Parent=Msa1281660-mRNA-1 |
| chr8_3 | exon | 21366849 | 21367037 | 21366849 | ID=Msa1281660-mRNA-1:exon:7802;Parent=Msa1281660-mRNA-1 |
| chr8_3 | exon | 21367114 | 21367249 | 21367114 | ID=Msa1281660-mRNA-1:exon:7801;Parent=Msa1281660-mRNA-1 |
| chr8_3 | exon | 21367374 | 21367456 | 21367374 | ID=Msa1281660-mRNA-1:exon:7800;Parent=Msa1281660-mRNA-1 |
| chr8_3 | exon | 21367572 | 21367724 | 21367572 | ID=Msa1281660-mRNA-1:exon:7799;Parent=Msa1281660-mRNA-1 |
| chr8_3 | exon | 21368367 | 21369006 | 21368367 | ID=Msa1281660-mRNA-1:exon:7798;Parent=Msa1281660-mRNA-1 |
| chr8_3 | exon | 21369033 | 21369087 | 21369033 | ID=Msa1281660-mRNA-1:exon:7797;Parent=Msa1281660-mRNA-1 |
| chr8_3 | five_prime_UTR | 21369033 | 21369087 | 21369033 | ID=Msa1281660-mRNA-1:five_prime_utr;Parent=Msa1281660-mRNA-1 |
| chr8_3 | five_prime_UTR | 21368943 | 21369006 | 21368943 | ID=Msa1281660-mRNA-1:five_prime_utr;Parent=Msa1281660-mRNA-1 |
| chr8_3 | CDS | 21368367 | 21368942 | 21368367 | ID=Msa1281660-mRNA-1:cds;Parent=Msa1281660-mRNA-1 |
| chr8_3 | CDS | 21367572 | 21367724 | 21367572 | ID=Msa1281660-mRNA-1:cds;Parent=Msa1281660-mRNA-1 |
| chr8_3 | CDS | 21367374 | 21367456 | 21367374 | ID=Msa1281660-mRNA-1:cds;Parent=Msa1281660-mRNA-1 |
| chr8_3 | CDS | 21367114 | 21367249 | 21367114 | ID=Msa1281660-mRNA-1:cds;Parent=Msa1281660-mRNA-1 |
| chr8_3 | CDS | 21366849 | 21367037 | 21366849 | ID=Msa1281660-mRNA-1:cds;Parent=Msa1281660-mRNA-1 |
| chr8_3 | CDS | 21361328 | 21361492 | 21361328 | ID=Msa1281660-mRNA-1:cds;Parent=Msa1281660-mRNA-1 |
| chr8_3 | three_prime_UTR | 21361140 | 21361327 | 21361140 | ID=Msa1281660-mRNA-1:three_prime_utr;Parent=Msa1281660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
