AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126210 MtrunA17_Chr1g0189111 95.630 389 13 1 1 385 1 389 0.0 697
Msa0126210 MtrunA17_Chr2g0321511 58.187 342 138 3 10 348 6 345 2.24e-143 413
Msa0126210 MtrunA17_Chr4g0043851 53.760 359 160 3 5 359 3 359 2.52e-140 406
Msa0126210 MtrunA17_Chr4g0026321 58.567 321 132 1 30 349 28 348 7.60e-140 404
Msa0126210 MtrunA17_Chr2g0285901 51.026 341 156 3 17 347 1 340 7.52e-122 359
Msa0126210 MtrunA17_Chr4g0003281 48.179 357 177 3 1 349 4 360 4.49e-116 344
Msa0126210 MtrunA17_Chr4g0064021 51.097 319 154 2 32 348 27 345 5.69e-110 328
Msa0126210 MtrunA17_Chr5g0439251 48.968 339 169 4 26 361 20 357 5.19e-102 311
Msa0126210 MtrunA17_Chr1g0177171 47.917 336 171 4 27 359 34 368 9.10e-102 311
Msa0126210 MtrunA17_Chr3g0144531 45.326 353 186 4 13 361 8 357 7.06e-101 307
Msa0126210 MtrunA17_Chr1g0155001 46.273 322 170 3 31 349 24 345 9.52e-100 303
Msa0126210 MtrunA17_Chr3g0119541 46.377 345 181 4 24 365 19 362 6.02e-99 299
Msa0126210 MtrunA17_Chr4g0034901 42.408 382 202 6 13 388 9 378 8.81e-98 300
Msa0126210 MtrunA17_Chr8g0389741 47.678 323 162 4 31 349 28 347 1.64e-96 298
Msa0126210 MtrunA17_Chr1g0146831 45.210 334 174 5 16 345 16 344 3.64e-96 293
Msa0126210 MtrunA17_Chr6g0487261 41.867 375 206 6 10 375 5 376 1.00e-92 288
Msa0126210 MtrunA17_Chr7g0223961 44.308 325 172 7 26 347 18 336 1.96e-90 280
Msa0126210 MtrunA17_Chr8g0339191 41.691 343 193 5 13 349 11 352 6.98e-85 266
Msa0126210 MtrunA17_Chr4g0043511 44.985 329 175 6 22 347 53 378 1.58e-81 260
Msa0126210 MtrunA17_Chr7g0234821 41.049 324 184 5 32 349 27 349 1.81e-80 255
Msa0126210 MtrunA17_Chr4g0046311 37.853 354 211 5 14 359 6 358 8.13e-80 253
Msa0126210 MtrunA17_Chr8g0378621 39.755 327 191 4 31 352 26 351 2.69e-76 245
Msa0126210 MtrunA17_Chr3g0121271 36.290 372 222 7 16 373 7 377 3.96e-74 239
Msa0126210 MtrunA17_Chr4g0038971 37.798 336 196 8 15 349 6 329 5.81e-72 229
Msa0126210 MtrunA17_Chr4g0075031 39.521 334 195 5 31 358 45 377 1.19e-71 234
Msa0126210 MtrunA17_Chr1g0161011 40.432 324 181 5 31 346 24 343 2.85e-71 232
Msa0126210 MtrunA17_Chr4g0039011 40.122 329 186 7 21 349 32 349 8.22e-71 227
Msa0126210 MtrunA17_Chr5g0434591 35.946 370 223 7 16 377 6 369 2.35e-70 229
Msa0126210 MtrunA17_Chr3g0110371 34.677 372 232 6 12 377 4 370 2.28e-69 227
Msa0126210 MtrunA17_Chr4g0038941 39.198 324 185 6 26 349 47 358 3.10e-69 223
Msa0126210 MtrunA17_Chr4g0038961 37.202 336 198 9 15 349 6 329 1.41e-66 215
Msa0126210 MtrunA17_Chr4g0038981 37.798 336 196 9 15 349 6 329 3.10e-66 214
Msa0126210 MtrunA17_Chr7g0250301 37.107 318 189 7 31 346 8 316 9.15e-66 213
Msa0126210 MtrunA17_Chr2g0294601 36.494 348 211 8 4 348 31 371 8.43e-65 212
Msa0126210 MtrunA17_Chr2g0294591 37.386 329 195 8 24 349 23 343 1.67e-61 202
Msa0126210 MtrunA17_Chr4g0039071 37.383 321 194 5 28 347 22 336 2.36e-61 203
Msa0126210 MtrunA17_Chr4g0039021 38.435 294 169 8 59 349 9 293 1.16e-59 196
Msa0126210 MtrunA17_Chr1g0174261 38.667 300 174 7 60 356 1 293 1.07e-55 187
Msa0126210 MtrunA17_Chr2g0290821 35.312 337 201 12 24 350 22 351 1.74e-53 185
Msa0126210 MtrunA17_Chr7g0250321 34.737 285 177 5 13 296 10 286 4.45e-53 179
Msa0126210 MtrunA17_Chr1g0148391 34.203 345 206 13 13 346 9 343 2.18e-52 182
Msa0126210 MtrunA17_Chr3g0138741 33.598 378 218 14 8 374 8 363 2.34e-52 182
Msa0126210 MtrunA17_Chr8g0383311 35.366 328 196 11 31 349 43 363 2.62e-52 182
Msa0126210 MtrunA17_Chr7g0253091 33.333 351 210 13 13 349 7 347 7.27e-52 181
Msa0126210 MtrunA17_Chr6g0461601 32.267 344 210 11 15 344 10 344 6.02e-50 176
Msa0126210 MtrunA17_Chr4g0062771 33.148 359 218 13 1 346 1 350 9.99e-49 172
Msa0126210 MtrunA17_Chr4g0069801 34.181 354 210 15 7 347 5 348 3.52e-47 168
Msa0126210 MtrunA17_Chr3g0129341 33.945 327 200 12 31 349 34 352 6.11e-46 165
Msa0126210 MtrunA17_Chr4g0076581 31.897 348 217 12 16 350 14 354 2.08e-43 158
Msa0126210 MtrunA17_Chr5g0436361 35.276 326 191 12 31 345 33 349 2.07e-42 153
Msa0126210 MtrunA17_Chr2g0306311 30.874 366 207 13 19 346 18 375 8.13e-41 151
Msa0126210 MtrunA17_Chr3g0105981 29.607 331 217 10 24 346 20 342 6.37e-32 125
Msa0126210 MtrunA17_Chr2g0294581 31.925 213 129 6 24 227 69 274 3.69e-20 90.1
Msa0126210 MtrunA17_Chr4g0018771 43.363 113 58 3 253 365 86 192 2.96e-16 77.4
Msa0126210 MtrunA17_Chr4g0018861 46.364 110 51 5 257 365 88 190 1.45e-15 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126210 AT1G32860.1 65.994 347 114 2 8 351 7 352 6.28e-166 473
Msa0126210 AT5G42100.2 67.081 322 102 2 30 347 26 347 2.37e-159 456
Msa0126210 AT5G42100.1 67.081 322 102 2 30 347 26 347 4.11e-159 455
Msa0126210 AT2G27500.2 61.846 325 122 2 27 349 25 349 7.09e-149 427
Msa0126210 AT2G27500.1 61.846 325 122 2 27 349 25 349 1.63e-148 427
Msa0126210 AT1G30080.2 54.462 325 147 1 24 347 29 353 5.26e-128 374
Msa0126210 AT4G18340.2 49.568 347 173 2 13 357 16 362 8.02e-128 374
Msa0126210 AT4G18340.1 49.568 347 173 2 13 357 16 362 8.10e-128 374
Msa0126210 AT1G30080.1 54.462 325 147 1 24 347 29 353 1.39e-127 374
Msa0126210 AT2G27500.3 62.731 271 99 2 81 349 1 271 1.31e-122 358
Msa0126210 AT3G15800.1 53.894 321 145 3 32 349 44 364 3.72e-118 350
Msa0126210 AT2G26600.1 51.562 320 153 2 32 349 35 354 1.19e-112 335
Msa0126210 AT4G26830.1 47.368 361 177 7 13 370 8 358 2.47e-106 322
Msa0126210 AT4G26830.2 48.424 349 168 6 25 370 23 362 2.40e-105 319
Msa0126210 AT2G05790.1 48.596 356 173 6 30 382 24 372 1.14e-103 315
Msa0126210 AT5G42720.1 47.059 340 174 4 16 349 8 347 1.00e-102 312
Msa0126210 AT4G34480.2 48.780 328 166 2 31 356 26 353 4.01e-102 307
Msa0126210 AT5G24318.4 46.646 328 167 5 24 347 22 345 1.09e-101 307
Msa0126210 AT5G24318.2 45.402 348 180 6 13 356 13 354 9.81e-101 307
Msa0126210 AT5G24318.1 45.402 348 180 6 13 356 13 354 2.22e-100 306
Msa0126210 AT5G55180.2 46.726 336 169 5 31 363 27 355 2.34e-99 304
Msa0126210 AT5G55180.1 46.726 336 169 5 31 363 27 355 3.77e-99 303
Msa0126210 AT4G34480.1 48.598 321 163 2 31 349 26 346 1.95e-98 303
Msa0126210 AT2G16230.1 46.084 332 177 2 31 360 25 356 1.03e-97 301
Msa0126210 AT2G26600.2 52.362 254 120 1 97 349 7 260 2.43e-90 275
Msa0126210 AT5G56590.1 44.720 322 175 3 31 349 26 347 1.03e-89 281
Msa0126210 AT3G07320.1 43.642 346 187 6 32 370 26 370 3.27e-88 275
Msa0126210 AT4G29360.1 45.133 339 180 4 13 349 12 346 2.94e-86 272
Msa0126210 AT4G29360.2 45.897 329 172 4 23 349 32 356 4.21e-85 270
Msa0126210 AT4G14080.1 41.210 347 190 6 8 349 27 364 3.28e-84 265
Msa0126210 AT3G23770.1 41.787 347 189 6 28 362 34 379 2.24e-82 261
Msa0126210 AT2G01630.2 41.975 324 182 4 31 349 23 345 1.49e-81 256
Msa0126210 AT2G01630.3 41.975 324 182 4 31 349 23 345 5.15e-81 256
Msa0126210 AT3G13560.4 42.633 319 177 4 31 344 26 343 5.39e-81 258
Msa0126210 AT3G13560.1 42.633 319 177 4 31 344 26 343 5.39e-81 258
Msa0126210 AT3G13560.2 42.633 319 177 4 31 344 26 343 5.39e-81 258
Msa0126210 AT3G13560.5 42.633 319 177 4 31 344 26 343 5.39e-81 258
Msa0126210 AT3G13560.3 42.633 319 177 4 31 344 26 343 5.39e-81 258
Msa0126210 AT2G01630.1 41.975 324 182 4 31 349 23 345 4.88e-80 255
Msa0126210 AT1G11820.1 41.049 324 185 4 31 349 44 366 1.14e-77 246
Msa0126210 AT1G11820.3 41.049 324 185 4 31 349 44 366 1.91e-76 245
Msa0126210 AT1G11820.2 41.049 324 185 4 31 349 44 366 4.62e-76 245
Msa0126210 AT2G39640.1 38.674 362 213 5 5 365 4 357 2.88e-75 244
Msa0126210 AT3G55430.1 39.776 357 197 11 18 365 17 364 7.08e-75 240
Msa0126210 AT3G46570.1 44.272 323 168 10 31 347 27 343 6.73e-74 235
Msa0126210 AT4G16260.1 37.647 340 201 6 13 349 4 335 1.45e-71 229
Msa0126210 AT3G61810.1 37.313 335 195 5 22 349 46 372 2.00e-71 229
Msa0126210 AT4G34480.3 50.644 233 114 1 118 349 3 235 2.96e-70 227
Msa0126210 AT3G57270.1 39.752 322 183 7 30 348 26 339 3.78e-70 225
Msa0126210 AT1G66250.1 37.879 330 198 5 25 349 26 353 2.43e-67 222
Msa0126210 AT4G16260.2 37.700 313 186 5 38 349 2 306 6.51e-65 210
Msa0126210 AT5G20340.1 38.110 328 190 9 23 346 35 353 2.44e-63 207
Msa0126210 AT5G24318.3 47.032 219 110 3 140 356 1 215 2.47e-63 206
Msa0126210 AT5G20330.1 36.207 348 205 10 7 346 6 344 2.77e-63 207
Msa0126210 AT5G20390.1 36.416 346 207 9 5 346 7 343 5.34e-62 204
Msa0126210 AT1G33220.1 36.280 328 188 8 22 346 25 334 2.33e-59 197
Msa0126210 AT1G77780.1 35.876 354 208 12 13 359 2 343 3.89e-59 197
Msa0126210 AT3G57260.1 34.513 339 208 8 13 349 13 339 7.34e-58 193
Msa0126210 AT3G57260.2 34.513 339 208 8 13 349 29 355 8.82e-58 193
Msa0126210 AT1G77790.1 33.143 350 221 8 1 346 1 341 3.23e-55 186
Msa0126210 AT3G57240.1 36.250 320 190 9 31 349 35 341 3.58e-55 186
Msa0126210 AT5G58090.1 35.542 332 196 12 25 346 16 339 6.54e-51 178
Msa0126210 AT4G31140.1 32.773 357 220 12 16 363 12 357 1.51e-49 175
Msa0126210 AT1G64760.1 33.141 347 214 11 13 349 7 345 3.83e-47 168
Msa0126210 AT1G64760.2 33.141 347 214 11 13 349 7 345 3.83e-47 168
Msa0126210 AT5G20560.1 32.931 331 210 9 11 338 15 336 4.09e-45 159
Msa0126210 AT5G18220.1 31.579 342 212 10 14 344 13 343 4.43e-45 163
Msa0126210 AT2G19440.2 33.233 331 203 11 29 349 19 341 1.74e-44 161
Msa0126210 AT2G19440.1 33.233 331 203 11 29 349 19 341 1.74e-44 161
Msa0126210 AT4G17180.1 33.131 329 201 11 30 350 24 341 2.87e-44 160
Msa0126210 AT3G55780.1 33.227 313 196 10 44 349 48 354 4.91e-44 157
Msa0126210 AT5G64790.1 31.940 335 212 11 24 349 21 348 5.62e-44 160
Msa0126210 AT3G24330.1 29.730 407 241 15 11 404 21 395 6.49e-44 160
Msa0126210 AT5G20870.1 33.524 349 197 16 20 346 19 354 1.86e-42 156
Msa0126210 AT3G04010.1 31.714 350 211 13 13 348 17 352 2.13e-41 153
Msa0126210 AT5G58480.1 30.931 333 214 10 26 349 21 346 7.03e-39 146

Find 134 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGCCCCTTGTATCTTCTT+TGG 0.185133 1_3:-55150698 None:intergenic
TTGTGACAGTGATTTGTTTA+TGG 0.189858 1_3:-55149509 None:intergenic
TTATCCTTACTTTGCTTATA+AGG 0.190578 1_3:+55149665 Msa0126210:CDS
CAAAATGAGAACCAATAAAA+TGG 0.193587 1_3:-55151554 None:intergenic
CCAACTTCTGAGAGGAATTA+TGG 0.228803 1_3:+55150032 Msa0126210:CDS
GGGAATCCTGTTTATAATCT+TGG 0.235486 1_3:+55150071 Msa0126210:CDS
GCGAAAGCTTTGAGAACTTT+TGG 0.247516 1_3:-55149252 None:intergenic
TCCATGCTTGAGCTTGTTTA+GGG 0.266792 1_3:-55149335 None:intergenic
ATCCATGCTTGAGCTTGTTT+AGG 0.272003 1_3:-55149336 None:intergenic
CATGATGAGAAAGGAGTAAA+AGG 0.273853 1_3:+55150746 Msa0126210:three_prime_UTR
TAATGGCACGGTGATATTAA+TGG 0.281195 1_3:+55148808 Msa0126210:five_prime_UTR
CACACTGCACTCATAGTTCT+TGG 0.288580 1_3:+55149483 Msa0126210:CDS
AACAATAATATGATATGATA+TGG 0.309271 1_3:+55151591 Msa0126210:three_prime_UTR
TTTGTATGACCCAGATTTAA+TGG 0.317738 1_3:+55148791 Msa0126210:five_prime_UTR
TATCACCGTGCCATTAAATC+TGG 0.326421 1_3:-55148801 None:intergenic
GGATCAACCATTCCTTGGTT+TGG 0.327470 1_3:-55149729 None:intergenic
TTAAGCTTTCAATCCAAAAC+TGG 0.338481 1_3:+55149621 Msa0126210:CDS
TATTCTGCGCTTGGAGCATT+AGG 0.348295 1_3:+55149804 Msa0126210:CDS
ACTTCTTATCCACCTTCTTC+CGG 0.351800 1_3:+55149558 Msa0126210:CDS
TCGAATGATGGTGGTAATAA+TGG 0.352748 1_3:+55150134 Msa0126210:CDS
GTGTGAACACTTTGCATTGC+TGG 0.359796 1_3:-55149465 None:intergenic
GAAAATGCGAGAAAGTATAA+TGG 0.372959 1_3:+55149906 Msa0126210:CDS
TAATCTAACGATATTTGCTT+AGG 0.376376 1_3:-55149693 None:intergenic
AACTTCAAAATCATCAATAA+TGG 0.381024 1_3:-55150646 None:intergenic
CCGGTGCATATTTCTGAAAC+AGG 0.382721 1_3:+55149840 Msa0126210:CDS
GGTGGTAATAATGGTACTAT+TGG 0.395208 1_3:+55150143 Msa0126210:CDS
TAAATATTCAAATCAACTTC+AGG 0.401550 1_3:-55149972 None:intergenic
AGTAAATAATCTGGCATGGC+GGG 0.402195 1_3:-55151519 None:intergenic
GCAACAAAATCTGAATCAAT+TGG 0.409686 1_3:+55149126 Msa0126210:CDS
AAAATGCGAGAAAGTATAAT+GGG 0.428212 1_3:+55149907 Msa0126210:CDS
AATGAATGAGAGTGGGTTGA+GGG 0.430072 1_3:-55148904 None:intergenic
GACGCTGTTTATTCTGCGCT+TGG 0.433976 1_3:+55149795 Msa0126210:CDS
ACATAAATAAGTAAATAATC+TGG 0.434217 1_3:-55151528 None:intergenic
TATATCAGAACGAAAAGTTC+CGG 0.437960 1_3:-55149577 None:intergenic
GAGAGTGGGTTGAGGGAAGG+TGG 0.439333 1_3:-55148897 None:intergenic
TTAATGTCTCATGCCGGTCT+AGG 0.443906 1_3:+55151466 Msa0126210:three_prime_UTR
CATGTATGGATCTGAGGATT+GGG 0.445535 1_3:-55148947 None:intergenic
ATAGAATTCATGGTAGGGCT+TGG 0.457900 1_3:+55149285 Msa0126210:CDS
GAGAATCCAAGATTATAAAC+AGG 0.458638 1_3:-55150077 None:intergenic
CAACACGGGTATAGAATTCA+TGG 0.462411 1_3:+55149275 Msa0126210:CDS
AATCTAACGATATTTGCTTA+GGG 0.465599 1_3:-55149692 None:intergenic
GAAAAGGGAATGAATGAGAG+TGG 0.466093 1_3:-55148912 None:intergenic
CCATAATTCCTCTCAGAAGT+TGG 0.473439 1_3:-55150032 None:intergenic
GGGAATGTGAATAGTGAAAA+GGG 0.474637 1_3:-55148927 None:intergenic
AAAATGAGAACCAATAAAAT+GGG 0.477239 1_3:-55151553 None:intergenic
TGGGAATGTGAATAGTGAAA+AGG 0.478171 1_3:-55148928 None:intergenic
ATAATGAAATCCCAAGCATA+TGG 0.481891 1_3:-55150612 None:intergenic
GAATGAATGAGAGTGGGTTG+AGG 0.484057 1_3:-55148905 None:intergenic
TATGGATTGTTTAAGCCTGA+TGG 0.485868 1_3:+55150050 Msa0126210:CDS
TCCACATTTCCTTCCTAGAC+CGG 0.488051 1_3:-55151479 None:intergenic
CATCCTCCAACTTCTTCCTC+CGG 0.488695 1_3:+55150185 Msa0126210:CDS
CAGGAGAGATACCATATGCT+TGG 0.489037 1_3:+55150601 Msa0126210:intron
GAGTAAAGGCATGATGAGAA+AGG 0.489767 1_3:+55150737 Msa0126210:three_prime_UTR
ATCTGGCATGGCGGGGCACA+AGG 0.494737 1_3:-55151511 None:intergenic
TTTGGATTGAAAGCTTAAGA+TGG 0.495529 1_3:-55149616 None:intergenic
ATAAAGTTGAGTAGTAAGAA+AGG 0.495740 1_3:+55149936 Msa0126210:CDS
TCGAGTCCTCCTTCGAATGA+TGG 0.500599 1_3:+55150122 Msa0126210:CDS
CATCAATAATGGTAGAAGAA+AGG 0.502229 1_3:-55150635 None:intergenic
TTATAAACAGGATTCCCATC+AGG 0.504478 1_3:-55150065 None:intergenic
GAACGAAAAGTTCCGGAAGA+AGG 0.505186 1_3:-55149570 None:intergenic
ATGGATTGTTTAAGCCTGAT+GGG 0.506000 1_3:+55150051 Msa0126210:CDS
CCATGTATGGATCTGAGGAT+TGG 0.507597 1_3:-55148948 None:intergenic
GGAAGGAAATGTGGACATCA+AGG 0.508761 1_3:+55151487 Msa0126210:three_prime_UTR
TGAAGTTGCAATAGCGGTGC+CGG 0.509145 1_3:-55148984 None:intergenic
AGGAGAGATACCATATGCTT+GGG 0.509590 1_3:+55150602 Msa0126210:intron
AGAGTGGGTTGAGGGAAGGT+GGG 0.509779 1_3:-55148896 None:intergenic
TTCCTCTCAGAAGTTGGACC+AGG 0.511117 1_3:-55150026 None:intergenic
AATGTAGGATGATCCATGTA+TGG 0.511687 1_3:-55148961 None:intergenic
AATAATGGTACTATTGGATC+TGG 0.512155 1_3:+55150149 Msa0126210:CDS
TTGTGGAAGGAAGGTAGGGT+TGG 0.515859 1_3:-55149371 None:intergenic
CAATAGCGGTGCCGGAATGT+AGG 0.516742 1_3:-55148976 None:intergenic
ACATGGATCATCCTACATTC+CGG 0.525681 1_3:+55148965 Msa0126210:exon
GTTTCAACCAAACCAAGGAA+TGG 0.532105 1_3:+55149722 Msa0126210:CDS
TAGTTCGGAGATCAAACAAA+CGG 0.533677 1_3:+55151714 Msa0126210:three_prime_UTR
GACAATTTAGAGAAGAGTAA+AGG 0.534461 1_3:+55150723 Msa0126210:three_prime_UTR
CTCAAAGCTTTCGCCAACAC+GGG 0.535437 1_3:+55149261 Msa0126210:CDS
TTATCCTTATAAGCAAAGTA+AGG 0.538288 1_3:-55149669 None:intergenic
TGCATATTTCTGAAACAGGT+TGG 0.538422 1_3:+55149844 Msa0126210:CDS
CCAATCCTCAGATCCATACA+TGG 0.539084 1_3:+55148948 Msa0126210:exon
ATGTTGAATTGAATGTAGGT+AGG 0.540641 1_3:-55148861 None:intergenic
AAATAACCGGAGGAAGAAGT+TGG 0.548180 1_3:-55150191 None:intergenic
GTAACCCTAATAAAATGCAT+TGG 0.548583 1_3:+55149198 Msa0126210:CDS
TGTTGAATTGAATGTAGGTA+GGG 0.549256 1_3:-55148860 None:intergenic
TTCTCTTTAATGTCTCATGC+CGG 0.552007 1_3:+55151460 Msa0126210:three_prime_UTR
ACCCTAAACAAGCTCAAGCA+TGG 0.553134 1_3:+55149334 Msa0126210:CDS
GTGTTAAAGACTCAAACAAA+AGG 0.556735 1_3:-55151664 None:intergenic
GGTTGGCCTTCGAAAGGAGA+TGG 0.560352 1_3:+55149861 Msa0126210:CDS
TGTCTCATGCCGGTCTAGGA+AGG 0.561199 1_3:+55151470 Msa0126210:three_prime_UTR
TTTGTTTGAGTCTTTAACAC+CGG 0.562011 1_3:+55151667 Msa0126210:three_prime_UTR
ACGGGTATAGAATTCATGGT+AGG 0.563473 1_3:+55149279 Msa0126210:CDS
GAGGAAGAAGTTGGAGGATG+CGG 0.566760 1_3:-55150182 None:intergenic
ATCACCGTGCCATTAAATCT+GGG 0.568547 1_3:-55148800 None:intergenic
GAATCAATTGGAATAAACTA+CGG 0.568633 1_3:+55149138 Msa0126210:CDS
GAAACAGGTTGGCCTTCGAA+AGG 0.569337 1_3:+55149855 Msa0126210:CDS
ACAGCATGCTATCATAATGC+AGG 0.570006 1_3:-55149761 None:intergenic
GTGAATCCAAAGAAGATACA+AGG 0.570723 1_3:+55150692 Msa0126210:exon
TGCACGTATGTGATAGTCGT+GGG 0.576145 1_3:-55151641 None:intergenic
AAAGGAGATGGAGATGAGGT+TGG 0.576671 1_3:+55149873 Msa0126210:CDS
ATGATCCATGTATGGATCTG+AGG 0.580676 1_3:-55148953 None:intergenic
AATGAGAGTGGGTTGAGGGA+AGG 0.581439 1_3:-55148900 None:intergenic
GTAAATAATCTGGCATGGCG+GGG 0.582624 1_3:-55151518 None:intergenic
CTTAAGATGGAAGCAATGCA+TGG 0.582736 1_3:-55149603 None:intergenic
AATAAGTAAATAATCTGGCA+TGG 0.583154 1_3:-55151523 None:intergenic
AGTAATGTTGAATTGAATGT+AGG 0.584117 1_3:-55148865 None:intergenic
CGAAAAGTTCCGGAAGAAGG+TGG 0.586411 1_3:-55149567 None:intergenic
CGGTAAATAAAACCTAGGTA+AGG 0.587112 1_3:+55151734 Msa0126210:three_prime_UTR
CATGAATTCTATACCCGTGT+TGG 0.588082 1_3:-55149274 None:intergenic
CGGGTATAGAATTCATGGTA+GGG 0.589149 1_3:+55149280 Msa0126210:CDS
GAAGGAAATGTGGACATCAA+GGG 0.594648 1_3:+55151488 Msa0126210:three_prime_UTR
TCATCTCCATCTCCTTTCGA+AGG 0.594882 1_3:-55149867 None:intergenic
TCTCAAAGCTTTCGCCAACA+CGG 0.595063 1_3:+55149260 Msa0126210:CDS
GAAGAAGTTGGAGGATGCGG+CGG 0.595408 1_3:-55150179 None:intergenic
GTATGAAATGATCCTTACCT+AGG 0.597877 1_3:-55151746 None:intergenic
TTTAATGAGAATTTGAAACC+TGG 0.603078 1_3:+55150008 Msa0126210:CDS
TAACCGGAGGAAGAAGTTGG+AGG 0.618276 1_3:-55150188 None:intergenic
GTTTGAGTCTTTAACACCGG+TGG 0.622658 1_3:+55151670 Msa0126210:three_prime_UTR
AAGTAAATAATCTGGCATGG+CGG 0.623238 1_3:-55151520 None:intergenic
CCTGTTTCAGAAATATGCAC+CGG 0.625689 1_3:-55149840 None:intergenic
TTATTACCACCATCATTCGA+AGG 0.630115 1_3:-55150131 None:intergenic
ACAAACGGTAAATAAAACCT+AGG 0.630500 1_3:+55151729 Msa0126210:three_prime_UTR
TTCGAAAGGAGATGGAGATG+AGG 0.634668 1_3:+55149869 Msa0126210:CDS
AATGGTACTATTGGATCTGG+TGG 0.638028 1_3:+55150152 Msa0126210:CDS
ATTAGGTTACGATAAAATGC+CGG 0.638184 1_3:+55149821 Msa0126210:CDS
GTGCACGTATGTGATAGTCG+TGG 0.640982 1_3:-55151642 None:intergenic
GCCGGTCTAGGAAGGAAATG+TGG 0.641614 1_3:+55151478 Msa0126210:three_prime_UTR
AAATCAACTTCAGGTCTCAA+CGG 0.641716 1_3:-55149963 None:intergenic
TGAATCCAAAGAAGATACAA+GGG 0.657656 1_3:+55150693 Msa0126210:exon
AGTCCTCCTTCGAATGATGG+TGG 0.666041 1_3:+55150125 Msa0126210:CDS
ATGACCCAGATTTAATGGCA+CGG 0.667459 1_3:+55148796 Msa0126210:five_prime_UTR
TTACCACCATCATTCGAAGG+AGG 0.670183 1_3:-55150128 None:intergenic
GAATCCAAAGAAGATACAAG+GGG 0.681565 1_3:+55150694 Msa0126210:exon
AAAAGGGAATGAATGAGAGT+GGG 0.687006 1_3:-55148911 None:intergenic
TGATGATGAAGTTGCAATAG+CGG 0.687297 1_3:-55148990 None:intergenic
AACCTGGTCCAACTTCTGAG+AGG 0.694615 1_3:+55150024 Msa0126210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTATTATTTTACTTTTA+GGG + chr1_3:55150473-55150492 Msa0126210:intron 10.0%
!! TAATAATTTAGTAAAAAAAC+AGG + chr1_3:55150524-55150543 Msa0126210:intron 10.0%
!! AATAATTTAGTAAAAAAACA+GGG + chr1_3:55150525-55150544 Msa0126210:intron 10.0%
!! ATATAATAATAAGATGTAGT+AGG - chr1_3:55149052-55149071 None:intergenic 15.0%
!!! CGTTTTATTATTTTACTTTT+AGG + chr1_3:55150472-55150491 Msa0126210:intron 15.0%
!! TATAAAATTTCGATGAATAT+TGG - chr1_3:55151122-55151141 None:intergenic 15.0%
!! CTAAAATAATGTATTATGTA+GGG - chr1_3:55151163-55151182 None:intergenic 15.0%
!! ACTAAAATAATGTATTATGT+AGG - chr1_3:55151164-55151183 None:intergenic 15.0%
!! ACATAAATAAGTAAATAATC+TGG - chr1_3:55151531-55151550 None:intergenic 15.0%
!! AACAATAATATGATATGATA+TGG + chr1_3:55151591-55151610 Msa0126210:three_prime_UTR 15.0%
!! TAAATATTCAAATCAACTTC+AGG - chr1_3:55149975-55149994 None:intergenic 20.0%
!! AACTTCAAAATCATCAATAA+TGG - chr1_3:55150649-55150668 None:intergenic 20.0%
!!! ATTTATGTATCCCATTTTAT+TGG + chr1_3:55151543-55151562 Msa0126210:three_prime_UTR 20.0%
!! AAAATGAGAACCAATAAAAT+GGG - chr1_3:55151556-55151575 None:intergenic 20.0%
!!! TAAAGAAAAGAGTTTTAGTT+CGG + chr1_3:55151699-55151718 Msa0126210:three_prime_UTR 20.0%
! AGTAATGTTGAATTGAATGT+AGG - chr1_3:55148868-55148887 None:intergenic 25.0%
!! ATCATTAGCATTTTCATTAC+AGG + chr1_3:55149012-55149031 Msa0126210:CDS 25.0%
! GAATCAATTGGAATAAACTA+CGG + chr1_3:55149138-55149157 Msa0126210:CDS 25.0%
!! AAAAATGGAAGTGATTTTTG+TGG - chr1_3:55149391-55149410 None:intergenic 25.0%
!!! AAAATCACTTCCATTTTTGT+AGG + chr1_3:55149393-55149412 Msa0126210:CDS 25.0%
! AACTTCATTTCCTACAAAAA+TGG - chr1_3:55149406-55149425 None:intergenic 25.0%
! TTATCCTTACTTTGCTTATA+AGG + chr1_3:55149665-55149684 Msa0126210:CDS 25.0%
! TTATCCTTATAAGCAAAGTA+AGG - chr1_3:55149672-55149691 None:intergenic 25.0%
! AATCTAACGATATTTGCTTA+GGG - chr1_3:55149695-55149714 None:intergenic 25.0%
! TAATCTAACGATATTTGCTT+AGG - chr1_3:55149696-55149715 None:intergenic 25.0%
!! AAAATGCGAGAAAGTATAAT+GGG + chr1_3:55149907-55149926 Msa0126210:CDS 25.0%
! ATAAAGTTGAGTAGTAAGAA+AGG + chr1_3:55149936-55149955 Msa0126210:CDS 25.0%
!! TTTAATGAGAATTTGAAACC+TGG + chr1_3:55150008-55150027 Msa0126210:CDS 25.0%
! AAACGAGTTAATATCATAGT+GGG - chr1_3:55150457-55150476 None:intergenic 25.0%
! AAAACGAGTTAATATCATAG+TGG - chr1_3:55150458-55150477 None:intergenic 25.0%
! TCCTTGTTGAACTTAAAAAT+AGG - chr1_3:55150499-55150518 None:intergenic 25.0%
!!! TTGATGATTTTGAAGTTTTG+AGG + chr1_3:55150652-55150671 Msa0126210:CDS 25.0%
! TATAATAACTCAACTTCTGT+TGG - chr1_3:55150781-55150800 None:intergenic 25.0%
! GTTGAGTTATTATATTCATG+TGG + chr1_3:55150787-55150806 Msa0126210:intron 25.0%
! TGAAATAATTCCAAAAGCAA+AGG - chr1_3:55150841-55150860 None:intergenic 25.0%
! ATATCTACTCTACAGATAAA+TGG - chr1_3:55150989-55151008 None:intergenic 25.0%
!! ATTTTTGTCATAAACTAAGC+TGG + chr1_3:55151201-55151220 Msa0126210:intron 25.0%
! GTATTAATATTCGAAACCTA+TGG - chr1_3:55151293-55151312 None:intergenic 25.0%
! GCAAAAGGAAAACATAAAAA+GGG - chr1_3:55151419-55151438 None:intergenic 25.0%
! TGCAAAAGGAAAACATAAAA+AGG - chr1_3:55151420-55151439 None:intergenic 25.0%
!! TTTTTATGTTTTCCTTTTGC+AGG + chr1_3:55151419-55151438 Msa0126210:intron 25.0%
! AATAAGTAAATAATCTGGCA+TGG - chr1_3:55151526-55151545 None:intergenic 25.0%
! CAAAATGAGAACCAATAAAA+TGG - chr1_3:55151557-55151576 None:intergenic 25.0%
TTTGTATGACCCAGATTTAA+TGG + chr1_3:55148791-55148810 Msa0126210:five_prime_UTR 30.0%
TGTTGAATTGAATGTAGGTA+GGG - chr1_3:55148863-55148882 None:intergenic 30.0%
ATGTTGAATTGAATGTAGGT+AGG - chr1_3:55148864-55148883 None:intergenic 30.0%
GCAACAAAATCTGAATCAAT+TGG + chr1_3:55149126-55149145 Msa0126210:CDS 30.0%
GTAACCCTAATAAAATGCAT+TGG + chr1_3:55149198-55149217 Msa0126210:CDS 30.0%
! TGCTCCAATGCATTTTATTA+GGG - chr1_3:55149205-55149224 None:intergenic 30.0%
! TTGCTCCAATGCATTTTATT+AGG - chr1_3:55149206-55149225 None:intergenic 30.0%
!! TTGTGACAGTGATTTGTTTA+TGG - chr1_3:55149512-55149531 None:intergenic 30.0%
TATATCAGAACGAAAAGTTC+CGG - chr1_3:55149580-55149599 None:intergenic 30.0%
TTTGGATTGAAAGCTTAAGA+TGG - chr1_3:55149619-55149638 None:intergenic 30.0%
TTAAGCTTTCAATCCAAAAC+TGG + chr1_3:55149621-55149640 Msa0126210:CDS 30.0%
GGATAAGCGTTTATCAAAAA+AGG - chr1_3:55149651-55149670 None:intergenic 30.0%
!! TCATAATGCAGGTTTGTTTT+TGG - chr1_3:55149753-55149772 None:intergenic 30.0%
ATTAGGTTACGATAAAATGC+CGG + chr1_3:55149821-55149840 Msa0126210:CDS 30.0%
! GAAAATGCGAGAAAGTATAA+TGG + chr1_3:55149906-55149925 Msa0126210:CDS 30.0%
GAGAATCCAAGATTATAAAC+AGG - chr1_3:55150080-55150099 None:intergenic 30.0%
AATAATGGTACTATTGGATC+TGG + chr1_3:55150149-55150168 Msa0126210:CDS 30.0%
!!! GCCTATTTTTAAGTTCAACA+AGG + chr1_3:55150495-55150514 Msa0126210:intron 30.0%
! GTATAGTTTTTCTTTGACTC+AGG + chr1_3:55150582-55150601 Msa0126210:intron 30.0%
ATAATGAAATCCCAAGCATA+TGG - chr1_3:55150615-55150634 None:intergenic 30.0%
CATCAATAATGGTAGAAGAA+AGG - chr1_3:55150638-55150657 None:intergenic 30.0%
TGAATCCAAAGAAGATACAA+GGG + chr1_3:55150693-55150712 Msa0126210:exon 30.0%
GACAATTTAGAGAAGAGTAA+AGG + chr1_3:55150723-55150742 Msa0126210:three_prime_UTR 30.0%
TTGTTACTAACTTTGTGAGT+TGG + chr1_3:55151080-55151099 Msa0126210:intron 30.0%
ATCACACACTTTAATGTTGT+TGG + chr1_3:55151346-55151365 Msa0126210:intron 30.0%
TCACACACTTTAATGTTGTT+GGG + chr1_3:55151347-55151366 Msa0126210:intron 30.0%
GTGTTAAAGACTCAAACAAA+AGG - chr1_3:55151667-55151686 None:intergenic 30.0%
TTTGTTTGAGTCTTTAACAC+CGG + chr1_3:55151667-55151686 Msa0126210:three_prime_UTR 30.0%
ACAAACGGTAAATAAAACCT+AGG + chr1_3:55151729-55151748 Msa0126210:three_prime_UTR 30.0%
! CATACTCAGATTTTCTCAAA+CGG + chr1_3:55151764-55151783 Msa0126210:three_prime_UTR 30.0%
TAATGGCACGGTGATATTAA+TGG + chr1_3:55148808-55148827 Msa0126210:five_prime_UTR 35.0%
AAAAGGGAATGAATGAGAGT+GGG - chr1_3:55148914-55148933 None:intergenic 35.0%
GGGAATGTGAATAGTGAAAA+GGG - chr1_3:55148930-55148949 None:intergenic 35.0%
TGGGAATGTGAATAGTGAAA+AGG - chr1_3:55148931-55148950 None:intergenic 35.0%
AATGTAGGATGATCCATGTA+TGG - chr1_3:55148964-55148983 None:intergenic 35.0%
! TGATGATGAAGTTGCAATAG+CGG - chr1_3:55148993-55149012 None:intergenic 35.0%
! ATTAGGGTTACTACGTTTTC+TGG - chr1_3:55149189-55149208 None:intergenic 35.0%
! ATTTTTGTGGAAGGAAGGTA+GGG - chr1_3:55149378-55149397 None:intergenic 35.0%
! AAGTGATTTTTGTGGAAGGA+AGG - chr1_3:55149383-55149402 None:intergenic 35.0%
! ATGGAAGTGATTTTTGTGGA+AGG - chr1_3:55149387-55149406 None:intergenic 35.0%
! CAAAAAAGGTGAACCAGTTT+TGG - chr1_3:55149637-55149656 None:intergenic 35.0%
!!! GTTTTGTTTCAACCAAACCA+AGG + chr1_3:55149717-55149736 Msa0126210:CDS 35.0%
! TTTTTGGATCAACCATTCCT+TGG - chr1_3:55149737-55149756 None:intergenic 35.0%
!! TGCATATTTCTGAAACAGGT+TGG + chr1_3:55149844-55149863 Msa0126210:CDS 35.0%
AAATCAACTTCAGGTCTCAA+CGG - chr1_3:55149966-55149985 None:intergenic 35.0%
! TATGGATTGTTTAAGCCTGA+TGG + chr1_3:55150050-55150069 Msa0126210:CDS 35.0%
! ATGGATTGTTTAAGCCTGAT+GGG + chr1_3:55150051-55150070 Msa0126210:CDS 35.0%
TTATAAACAGGATTCCCATC+AGG - chr1_3:55150068-55150087 None:intergenic 35.0%
GGGAATCCTGTTTATAATCT+TGG + chr1_3:55150071-55150090 Msa0126210:CDS 35.0%
TTATTACCACCATCATTCGA+AGG - chr1_3:55150134-55150153 None:intergenic 35.0%
!! TCGAATGATGGTGGTAATAA+TGG + chr1_3:55150134-55150153 Msa0126210:CDS 35.0%
GGTGGTAATAATGGTACTAT+TGG + chr1_3:55150143-55150162 Msa0126210:CDS 35.0%
AACAGGGCTTAAGACAAAAA+TGG + chr1_3:55150541-55150560 Msa0126210:intron 35.0%
GTGAATCCAAAGAAGATACA+AGG + chr1_3:55150692-55150711 Msa0126210:exon 35.0%
GAATCCAAAGAAGATACAAG+GGG + chr1_3:55150694-55150713 Msa0126210:exon 35.0%
CATGATGAGAAAGGAGTAAA+AGG + chr1_3:55150746-55150765 Msa0126210:three_prime_UTR 35.0%
GTTATTATATTCATGTGGCG+TGG + chr1_3:55150792-55150811 Msa0126210:intron 35.0%
CATTGAGAAACGACACTTTA+TGG - chr1_3:55150925-55150944 None:intergenic 35.0%
!! CATAAAGTGTCGTTTCTCAA+TGG + chr1_3:55150923-55150942 Msa0126210:intron 35.0%
ACTAAGCTGGTTGCAATAAT+TGG + chr1_3:55151214-55151233 Msa0126210:intron 35.0%
CTAGCATTATTGTATCCGTT+AGG + chr1_3:55151312-55151331 Msa0126210:intron 35.0%
TGATTCTGTCAGTTTCCTAA+CGG - chr1_3:55151330-55151349 None:intergenic 35.0%
GTATGTATTCTTCCTGCAAA+AGG - chr1_3:55151434-55151453 None:intergenic 35.0%
TTCTCTTTAATGTCTCATGC+CGG + chr1_3:55151460-55151479 Msa0126210:three_prime_UTR 35.0%
AAGTAAATAATCTGGCATGG+CGG - chr1_3:55151523-55151542 None:intergenic 35.0%
!!! CTTTTCTTTAGAACTACCAC+CGG - chr1_3:55151689-55151708 None:intergenic 35.0%
TAGTTCGGAGATCAAACAAA+CGG + chr1_3:55151714-55151733 Msa0126210:three_prime_UTR 35.0%
CGGTAAATAAAACCTAGGTA+AGG + chr1_3:55151734-55151753 Msa0126210:three_prime_UTR 35.0%
GTATGAAATGATCCTTACCT+AGG - chr1_3:55151749-55151768 None:intergenic 35.0%
ATGACCCAGATTTAATGGCA+CGG + chr1_3:55148796-55148815 Msa0126210:five_prime_UTR 40.0%
! ATCACCGTGCCATTAAATCT+GGG - chr1_3:55148803-55148822 None:intergenic 40.0%
! TATCACCGTGCCATTAAATC+TGG - chr1_3:55148804-55148823 None:intergenic 40.0%
!! AATGAATGAGAGTGGGTTGA+GGG - chr1_3:55148907-55148926 None:intergenic 40.0%
GAAAAGGGAATGAATGAGAG+TGG - chr1_3:55148915-55148934 None:intergenic 40.0%
CATGTATGGATCTGAGGATT+GGG - chr1_3:55148950-55148969 None:intergenic 40.0%
ATGATCCATGTATGGATCTG+AGG - chr1_3:55148956-55148975 None:intergenic 40.0%
ACATGGATCATCCTACATTC+CGG + chr1_3:55148965-55148984 Msa0126210:exon 40.0%
AAACAGTGTCCTATTTGTGC+AGG + chr1_3:55149099-55149118 Msa0126210:intron 40.0%
!! GTTACTACGTTTTCTGGTGA+TGG - chr1_3:55149183-55149202 None:intergenic 40.0%
!!! GCGAAAGCTTTGAGAACTTT+TGG - chr1_3:55149255-55149274 None:intergenic 40.0%
CATGAATTCTATACCCGTGT+TGG - chr1_3:55149277-55149296 None:intergenic 40.0%
CAACACGGGTATAGAATTCA+TGG + chr1_3:55149275-55149294 Msa0126210:CDS 40.0%
ACGGGTATAGAATTCATGGT+AGG + chr1_3:55149279-55149298 Msa0126210:CDS 40.0%
CGGGTATAGAATTCATGGTA+GGG + chr1_3:55149280-55149299 Msa0126210:CDS 40.0%
ATAGAATTCATGGTAGGGCT+TGG + chr1_3:55149285-55149304 Msa0126210:CDS 40.0%
! TCCATGCTTGAGCTTGTTTA+GGG - chr1_3:55149338-55149357 None:intergenic 40.0%
! ATCCATGCTTGAGCTTGTTT+AGG - chr1_3:55149339-55149358 None:intergenic 40.0%
! GATTTTTGTGGAAGGAAGGT+AGG - chr1_3:55149379-55149398 None:intergenic 40.0%
ACTTCTTATCCACCTTCTTC+CGG + chr1_3:55149558-55149577 Msa0126210:CDS 40.0%
CTTAAGATGGAAGCAATGCA+TGG - chr1_3:55149606-55149625 None:intergenic 40.0%
GTTTCAACCAAACCAAGGAA+TGG + chr1_3:55149722-55149741 Msa0126210:CDS 40.0%
ACAGCATGCTATCATAATGC+AGG - chr1_3:55149764-55149783 None:intergenic 40.0%
CCTGTTTCAGAAATATGCAC+CGG - chr1_3:55149843-55149862 None:intergenic 40.0%
CCATAATTCCTCTCAGAAGT+TGG - chr1_3:55150035-55150054 None:intergenic 40.0%
! CCAACTTCTGAGAGGAATTA+TGG + chr1_3:55150032-55150051 Msa0126210:CDS 40.0%
AATGGTACTATTGGATCTGG+TGG + chr1_3:55150152-55150171 Msa0126210:CDS 40.0%
AAATAACCGGAGGAAGAAGT+TGG - chr1_3:55150194-55150213 None:intergenic 40.0%
AACTTCTTCCTCCGGTTATT+TGG + chr1_3:55150193-55150212 Msa0126210:intron 40.0%
TCCAGAAATGGCCAAATAAC+CGG - chr1_3:55150207-55150226 None:intergenic 40.0%
!! CTATCATTTTGATCTTCCCC+CGG + chr1_3:55150354-55150373 Msa0126210:intron 40.0%
TTTACGAGACTCGTGTTATC+CGG - chr1_3:55150376-55150395 None:intergenic 40.0%
AGGAGAGATACCATATGCTT+GGG + chr1_3:55150602-55150621 Msa0126210:intron 40.0%
! GAGTAAAGGCATGATGAGAA+AGG + chr1_3:55150737-55150756 Msa0126210:three_prime_UTR 40.0%
! CTTTGCTTGTCCTTTGCTTT+TGG + chr1_3:55150828-55150847 Msa0126210:intron 40.0%
GGCAAATTTCAGTTTCCAAG+AGG - chr1_3:55150904-55150923 None:intergenic 40.0%
! GTGTACTACTAGAGTACTAG+TGG - chr1_3:55150967-55150986 None:intergenic 40.0%
AAGAGATTTCACGCTAGAAG+CGG + chr1_3:55151021-55151040 Msa0126210:intron 40.0%
CTATGGTTCAAGATTGTCAC+TGG - chr1_3:55151276-55151295 None:intergenic 40.0%
CAGTGACAATCTTGAACCAT+AGG + chr1_3:55151274-55151293 Msa0126210:intron 40.0%
CACACTTTAATGTTGTTGGG+CGG + chr1_3:55151350-55151369 Msa0126210:intron 40.0%
GAAGGAAATGTGGACATCAA+GGG + chr1_3:55151488-55151507 Msa0126210:three_prime_UTR 40.0%
AGTAAATAATCTGGCATGGC+GGG - chr1_3:55151522-55151541 None:intergenic 40.0%
! CTCAAACGGTTTTACTGATG+AGG + chr1_3:55151778-55151797 Msa0126210:three_prime_UTR 40.0%
!! GAATGAATGAGAGTGGGTTG+AGG - chr1_3:55148908-55148927 None:intergenic 45.0%
CCATGTATGGATCTGAGGAT+TGG - chr1_3:55148951-55148970 None:intergenic 45.0%
CCAATCCTCAGATCCATACA+TGG + chr1_3:55148948-55148967 Msa0126210:exon 45.0%
GTTGCTAGTCCTGCACAAAT+AGG - chr1_3:55149111-55149130 None:intergenic 45.0%
!!! CTACGTTTTCTGGTGATGGT+AGG - chr1_3:55149179-55149198 None:intergenic 45.0%
TCTCAAAGCTTTCGCCAACA+CGG + chr1_3:55149260-55149279 Msa0126210:CDS 45.0%
ACCCTAAACAAGCTCAAGCA+TGG + chr1_3:55149334-55149353 Msa0126210:CDS 45.0%
GTGTGAACACTTTGCATTGC+TGG - chr1_3:55149468-55149487 None:intergenic 45.0%
CACACTGCACTCATAGTTCT+TGG + chr1_3:55149483-55149502 Msa0126210:CDS 45.0%
GAACGAAAAGTTCCGGAAGA+AGG - chr1_3:55149573-55149592 None:intergenic 45.0%
GGATCAACCATTCCTTGGTT+TGG - chr1_3:55149732-55149751 None:intergenic 45.0%
! TATTCTGCGCTTGGAGCATT+AGG + chr1_3:55149804-55149823 Msa0126210:CDS 45.0%
!! CCGGTGCATATTTCTGAAAC+AGG + chr1_3:55149840-55149859 Msa0126210:CDS 45.0%
TCATCTCCATCTCCTTTCGA+AGG - chr1_3:55149870-55149889 None:intergenic 45.0%
TTCGAAAGGAGATGGAGATG+AGG + chr1_3:55149869-55149888 Msa0126210:CDS 45.0%
AAAGGAGATGGAGATGAGGT+TGG + chr1_3:55149873-55149892 Msa0126210:CDS 45.0%
TTACCACCATCATTCGAAGG+AGG - chr1_3:55150131-55150150 None:intergenic 45.0%
AGAAATGGCCAAATAACCGG+AGG - chr1_3:55150204-55150223 None:intergenic 45.0%
TCCGGTTATTTGGCCATTTC+TGG + chr1_3:55150203-55150222 Msa0126210:intron 45.0%
CAGTGAAGTAGCTCCAGAAA+TGG - chr1_3:55150219-55150238 None:intergenic 45.0%
!! CATTTCTGGAGCTACTTCAC+TGG + chr1_3:55150217-55150236 Msa0126210:intron 45.0%
TTACGAGACTCGTGTTATCC+GGG - chr1_3:55150375-55150394 None:intergenic 45.0%
CAGGAGAGATACCATATGCT+TGG + chr1_3:55150601-55150620 Msa0126210:intron 45.0%
GATGCCCCTTGTATCTTCTT+TGG - chr1_3:55150701-55150720 None:intergenic 45.0%
CAGTTTCCAAGAGGAGACAA+CGG - chr1_3:55150895-55150914 None:intergenic 45.0%
TTAATGTCTCATGCCGGTCT+AGG + chr1_3:55151466-55151485 Msa0126210:three_prime_UTR 45.0%
TCCACATTTCCTTCCTAGAC+CGG - chr1_3:55151482-55151501 None:intergenic 45.0%
GGAAGGAAATGTGGACATCA+AGG + chr1_3:55151487-55151506 Msa0126210:three_prime_UTR 45.0%
GTAAATAATCTGGCATGGCG+GGG - chr1_3:55151521-55151540 None:intergenic 45.0%
TGCACGTATGTGATAGTCGT+GGG - chr1_3:55151644-55151663 None:intergenic 45.0%
GTTTGAGTCTTTAACACCGG+TGG + chr1_3:55151670-55151689 Msa0126210:three_prime_UTR 45.0%
!! AATGAGAGTGGGTTGAGGGA+AGG - chr1_3:55148903-55148922 None:intergenic 50.0%
TGAAGTTGCAATAGCGGTGC+CGG - chr1_3:55148987-55149006 None:intergenic 50.0%
CTCAAAGCTTTCGCCAACAC+GGG + chr1_3:55149261-55149280 Msa0126210:CDS 50.0%
TTGTGGAAGGAAGGTAGGGT+TGG - chr1_3:55149374-55149393 None:intergenic 50.0%
CGAAAAGTTCCGGAAGAAGG+TGG - chr1_3:55149570-55149589 None:intergenic 50.0%
GACGCTGTTTATTCTGCGCT+TGG + chr1_3:55149795-55149814 Msa0126210:CDS 50.0%
!! GAAACAGGTTGGCCTTCGAA+AGG + chr1_3:55149855-55149874 Msa0126210:CDS 50.0%
AACCTGGTCCAACTTCTGAG+AGG + chr1_3:55150024-55150043 Msa0126210:CDS 50.0%
TTCCTCTCAGAAGTTGGACC+AGG - chr1_3:55150029-55150048 None:intergenic 50.0%
TCGAGTCCTCCTTCGAATGA+TGG + chr1_3:55150122-55150141 Msa0126210:CDS 50.0%
AGTCCTCCTTCGAATGATGG+TGG + chr1_3:55150125-55150144 Msa0126210:CDS 50.0%
GAGGAAGAAGTTGGAGGATG+CGG - chr1_3:55150185-55150204 None:intergenic 50.0%
CATCCTCCAACTTCTTCCTC+CGG + chr1_3:55150185-55150204 Msa0126210:CDS 50.0%
TAACCGGAGGAAGAAGTTGG+AGG - chr1_3:55150191-55150210 None:intergenic 50.0%
TACGAGACTCGTGTTATCCG+GGG - chr1_3:55150374-55150393 None:intergenic 50.0%
AACGTACCGTTGTCTCCTCT+TGG + chr1_3:55150886-55150905 Msa0126210:intron 50.0%
GCGGCACATGTTATGCTAGT+TGG + chr1_3:55151369-55151388 Msa0126210:intron 50.0%
GTGCACGTATGTGATAGTCG+TGG - chr1_3:55151645-55151664 None:intergenic 50.0%
!! AGAGTGGGTTGAGGGAAGGT+GGG - chr1_3:55148899-55148918 None:intergenic 55.0%
! CAATAGCGGTGCCGGAATGT+AGG - chr1_3:55148979-55148998 None:intergenic 55.0%
!! GGTTGGCCTTCGAAAGGAGA+TGG + chr1_3:55149861-55149880 Msa0126210:CDS 55.0%
GAAGAAGTTGGAGGATGCGG+CGG - chr1_3:55150182-55150201 None:intergenic 55.0%
ACGAGACTCGTGTTATCCGG+GGG - chr1_3:55150373-55150392 None:intergenic 55.0%
TGTCTCATGCCGGTCTAGGA+AGG + chr1_3:55151470-55151489 Msa0126210:three_prime_UTR 55.0%
GCCGGTCTAGGAAGGAAATG+TGG + chr1_3:55151478-55151497 Msa0126210:three_prime_UTR 55.0%
!! GAGAGTGGGTTGAGGGAAGG+TGG - chr1_3:55148900-55148919 None:intergenic 60.0%
! ATCTGGCATGGCGGGGCACA+AGG - chr1_3:55151514-55151533 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55148782 55151803 55148782 ID=Msa0126210;Name=Msa0126210
chr1_3 mRNA 55148782 55151803 55148782 ID=Msa0126210-mRNA-1;Parent=Msa0126210;Name=Msa0126210-mRNA-1;_AED=0.15;_eAED=0.15;_QI=185|0.66|0.75|1|0.66|0.5|4|435|414
chr1_3 exon 55148782 55149033 55148782 ID=Msa0126210-mRNA-1:exon:17056;Parent=Msa0126210-mRNA-1
chr1_3 exon 55149121 55150206 55149121 ID=Msa0126210-mRNA-1:exon:17057;Parent=Msa0126210-mRNA-1
chr1_3 exon 55150604 55150767 55150604 ID=Msa0126210-mRNA-1:exon:17058;Parent=Msa0126210-mRNA-1
chr1_3 exon 55151441 55151803 55151441 ID=Msa0126210-mRNA-1:exon:17059;Parent=Msa0126210-mRNA-1
chr1_3 five_prime_UTR 55148782 55148966 55148782 ID=Msa0126210-mRNA-1:five_prime_utr;Parent=Msa0126210-mRNA-1
chr1_3 CDS 55148967 55149033 55148967 ID=Msa0126210-mRNA-1:cds;Parent=Msa0126210-mRNA-1
chr1_3 CDS 55149121 55150206 55149121 ID=Msa0126210-mRNA-1:cds;Parent=Msa0126210-mRNA-1
chr1_3 CDS 55150604 55150695 55150604 ID=Msa0126210-mRNA-1:cds;Parent=Msa0126210-mRNA-1
chr1_3 three_prime_UTR 55150696 55150767 55150696 ID=Msa0126210-mRNA-1:three_prime_utr;Parent=Msa0126210-mRNA-1
chr1_3 three_prime_UTR 55151441 55151803 55151441 ID=Msa0126210-mRNA-1:three_prime_utr;Parent=Msa0126210-mRNA-1
Gene Sequence

>Msa0126210

ATGGATCATCCTACATTCCGGCACCGCTATTGCAACTTCATCATCATCATTAGCATTTTCATTACAGGACTAGCAACAAAATCTGAATCAATTGGAATAAACTACGGTCAAATAGCAAACAACCTACCATCACCAGAAAACGTAGTAACCCTAATAAAATGCATTGGAGCAACAAAAGTAAAACTCTACGACGCAGATCCAAAAGTTCTCAAAGCTTTCGCCAACACGGGTATAGAATTCATGGTAGGGCTTGGAAATGAATATCTCTCTAAAATGAAAGACCCTAAACAAGCTCAAGCATGGATCAAAACAAATCTCCAACCCTACCTTCCTTCCACAAAAATCACTTCCATTTTTGTAGGAAATGAAGTTCTCACTTTCAATGACTCTTCTTTAACATCTTCTCTTCTACCAGCAATGCAAAGTGTTCACACTGCACTCATAGTTCTTGGTCTCCATAAACAAATCACTGTCACAACAACTCATTCATTAGCTATACTACAAACTTCTTATCCACCTTCTTCCGGAACTTTTCGTTCTGATATAGCTCCATGCATTGCTTCCATCTTAAGCTTTCAATCCAAAACTGGTTCACCTTTTTTGATAAACGCTTATCCTTACTTTGCTTATAAGGATAACCCTAAGCAAATATCGTTAGATTATGTTTTGTTTCAACCAAACCAAGGAATGGTTGATCCAAAAACAAACCTGCATTATGATAGCATGCTGTTTGCGCAGATCGACGCTGTTTATTCTGCGCTTGGAGCATTAGGTTACGATAAAATGCCGGTGCATATTTCTGAAACAGGTTGGCCTTCGAAAGGAGATGGAGATGAGGTTGGTGCTAATGTTGAAAATGCGAGAAAGTATAATGGGAATGTGATAAAGTTGAGTAGTAAGAAAGGAACACCGTTGAGACCTGAAGTTGATTTGAATATTTATGTTTTTGCACTTTTTAATGAGAATTTGAAACCTGGTCCAACTTCTGAGAGGAATTATGGATTGTTTAAGCCTGATGGGAATCCTGTTTATAATCTTGGATTCTCGCTGTCTTCGTTTTCTTCGAATTCGAGTCCTCCTTCGAATGATGGTGGTAATAATGGTACTATTGGATCTGGTGGTGCTCCGCCGCATCCTCCAACTTCTTCCTCCGGAGAGATACCATATGCTTGGGATTTCATTATCCTTTCTTCTACCATTATTGATGATTTTGAAGTTTTGAGGATTTTTTTCACTATGAAGTGA
Protein sequence

>Msa0126210

MDHPTFRHRYCNFIIIISIFITGLATKSESIGINYGQIANNLPSPENVVTLIKCIGATKVKLYDADPKVLKAFANTGIEFMVGLGNEYLSKMKDPKQAQAWIKTNLQPYLPSTKITSIFVGNEVLTFNDSSLTSSLLPAMQSVHTALIVLGLHKQITVTTTHSLAILQTSYPPSSGTFRSDIAPCIASILSFQSKTGSPFLINAYPYFAYKDNPKQISLDYVLFQPNQGMVDPKTNLHYDSMLFAQIDAVYSALGALGYDKMPVHISETGWPSKGDGDEVGANVENARKYNGNVIKLSSKKGTPLRPEVDLNIYVFALFNENLKPGPTSERNYGLFKPDGNPVYNLGFSLSSFSSNSSPPSNDGGNNGTIGSGGAPPHPPTSSSGEIPYAWDFIILSSTIIDDFEVLRIFFTMK*