AlfalfaGEDB | Msa1352920

M. sativa cultivar zhongmu-4 / Msa1352920

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1352920	XP_003600619.2	97.561	205	5	0	1	205	1	205	1.52e-139	398

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1352920	sp\|Q9LVB9\|OXS3_ARATH	51.613	93	42	1	75	164	74	166	5.06e-17	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1352920	I3S5Y6	97.561	205	5	0	1	205	1	205	7.25e-140	398

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0046950	Msa1352920	0.813070	3.082450e-51	-8.615850e-47
Msa0233920	Msa1352920	0.803113	4.070612e-49	-8.615850e-47
Msa0403750	Msa1352920	0.847823	9.062801e-60	-8.615850e-47
Msa0403790	Msa1352920	0.912232	2.465422e-83	-8.615850e-47
Msa0403860	Msa1352920	0.892957	9.823400e-75	-8.615850e-47
Msa0460760	Msa1352920	0.849654	2.815097e-60	-8.615850e-47
Msa0484400	Msa1352920	0.812115	4.987195e-51	-8.615850e-47
Msa0689300	Msa1352920	0.837049	6.538484e-57	-8.615850e-47
Msa0982550	Msa1352920	0.806512	7.935379e-50	-8.615850e-47
Msa1129420	Msa1352920	0.806521	7.901417e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1352920	MtrunA17_Chr3g0109691	97.561	205	5	0	1	205	1	205	1.40e-143	398
Msa1352920	MtrunA17_Chr6g0487221	46.491	114	50	4	76	187	102	206	4.61e-21	86.7
Msa1352920	MtrunA17_Chr8g0389751	55.556	63	26	2	75	135	75	137	5.12e-15	69.3
Msa1352920	MtrunA17_Chr3g0136361	40.659	91	50	2	74	160	64	154	1.79e-12	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1352920	AT5G56550.1	51.613	93	42	1	75	164	74	166	5.15e-18	78.2
Msa1352920	AT4G26288.1	56.061	66	21	2	75	136	59	120	1.90e-12	62.8
Msa1352920	AT5G21940.1	50.847	59	21	1	75	125	74	132	8.22e-11	60.1

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Find 48 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGGTGATATAGTTT+GGG	0.350977	tig0012925:+48528	None:intergenic
AAATGAGGTGATATAGTTTG+GGG	0.632419	tig0012925:+48529	None:intergenic
AACAAATGTGAAGAGTTTGG+AGG	0.582899	tig0012925:-47976	Msa1352920:CDS
AACTGCTTTGTTTGCTTGAA+AGG	0.362454	tig0012925:-47694	Msa1352920:exon
AAGGCTTGTTTCTAAGAGGG+GGG	0.642551	tig0012925:-47853	Msa1352920:CDS
AAGTCATGTAGAAGCTATGG+AGG	0.581269	tig0012925:-47915	Msa1352920:CDS
ACATGCACTTTAATTTGTCT+AGG	0.527593	tig0012925:+48500	None:intergenic
ACTGCTTTGTTTGCTTGAAA+GGG	0.445401	tig0012925:-47693	Msa1352920:exon
AGAGAAGACATATCACTTAA+TGG	0.324873	tig0012925:+48195	None:intergenic
AGGATGAAGAAGATGAAGTA+GGG	0.381879	tig0012925:+48247	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAGGTGATATAGTTTG+GGG	+	tig0012925:47707-47726	None:intergenic	30.0%
TCATCATAGTCTTCATGAAA+TGG	+	tig0012925:47867-47886	None:intergenic	30.0%
AGAGAAGACATATCACTTAA+TGG	+	tig0012925:48041-48060	None:intergenic	30.0%
TTCTTCTTTGAATGCAAGAA+AGG	-	tig0012925:48431-48450	Msa1352920:exon	30.0%
TCTTCTTTGAATGCAAGAAA+GGG	-	tig0012925:48432-48451	Msa1352920:exon	30.0%
GAAGTAACTTTATGGGTAAT+AGG	-	tig0012925:48460-48479	Msa1352920:five_prime_UTR	30.0%
GATCTATTATGAGGATGAAT+TGG	+	tig0012925:48489-48508	None:intergenic	30.0%
CTAGTAGATGATCTATTATG+AGG	+	tig0012925:48498-48517	None:intergenic	30.0%
ATTTATGGAGTTGTGATTTG+CGG	-	tig0012925:48607-48626	Msa1352920:five_prime_UTR	30.0%
AAATGAGGTGATATAGTTTG+GGG	+	tig0012925:47707-47726	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0012925	gene	47619	48636	47619	ID=Msa1352920;Name=Msa1352920
tig0012925	mRNA	47619	48636	47619	ID=Msa1352920-mRNA-1;Parent=Msa1352920;Name=Msa1352920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=197\|1\|1\|1\|1\|1\|2\|79\|205
tig0012925	exon	47619	48049	47619	ID=Msa1352920-mRNA-1:exon:8415;Parent=Msa1352920-mRNA-1
tig0012925	exon	48174	48636	48174	ID=Msa1352920-mRNA-1:exon:8414;Parent=Msa1352920-mRNA-1
tig0012925	five_prime_UTR	48440	48636	48440	ID=Msa1352920-mRNA-1:five_prime_utr;Parent=Msa1352920-mRNA-1
tig0012925	CDS	48174	48439	48174	ID=Msa1352920-mRNA-1:cds;Parent=Msa1352920-mRNA-1
tig0012925	CDS	47698	48049	47698	ID=Msa1352920-mRNA-1:cds;Parent=Msa1352920-mRNA-1
tig0012925	three_prime_UTR	47619	47697	47619	ID=Msa1352920-mRNA-1:three_prime_utr;Parent=Msa1352920-mRNA-1

Gene Sequence

>Msa1352920

ATGGAACAAAAAATGAACAATCCTATGATTGAATCACCAAAGAAAAGACCATTTCATGAAGACTATGATGATATTATAGATGGTTCTTTCTTTTCTTCTGATTCTGAAGTTTCAAATGGTAATTCATCATCAGAATTATCAGAATCTGATTCATTTGAAGATGTTACATCCCCTACTTCATCTTCTTCATCCTCATCTACTCATCAACTTGAAGCAGCTGATCCATTAAGTGATATGTCTTCTCTGTTTCAACAACTTCCAATCAAGAGGGGACTTTCAAAATTCTACCAAGGAAAATCACAATCTTTTACTTCATTAACAAATGTGAAGAGTTTGGAGGATCTTGCAAAGCCAGAGAGTCCTTACAACAAGAGGTTGAAGTCATGTAGAAGCTATGGAGGGTTTTATGAGAGCCAAGAATCAAGTTTTAAATCTATGTCAAGGCTTGTTTCTAAGAGGGGGGTGAATTCAGCAAGTTCAAGGGGTTCATGTTCTTCTTTGAATGCAAGAAAGGGAAGTGGAAGTAACTTTATGGGTAATAGGCCACCAATTCATCCTCATAATAGATCATCTACTAGCACCAACAATATCTCTAATCAAACTGCTTTGTTTGCTTGA

Protein sequence

>Msa1352920

MEQKMNNPMIESPKKRPFHEDYDDIIDGSFFSSDSEVSNGNSSSELSESDSFEDVTSPTSSSSSSSTHQLEAADPLSDMSSLFQQLPIKRGLSKFYQGKSQSFTSLTNVKSLEDLAKPESPYNKRLKSCRSYGGFYESQESSFKSMSRLVSKRGVNSASSRGSCSSLNARKGSGSNFMGNRPPIHPHNRSSTSTNNISNQTALFA*