Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689300 | XP_003600619.2 | 98.049 | 205 | 4 | 0 | 1 | 205 | 1 | 205 | 4.54e-140 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689300 | sp|Q9LVB9|OXS3_ARATH | 51.613 | 93 | 42 | 1 | 75 | 164 | 74 | 166 | 6.12e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689300 | I3S5Y6 | 98.049 | 205 | 4 | 0 | 1 | 205 | 1 | 205 | 2.17e-140 | 399 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046950 | Msa0689300 | 0.835823 | 1.340998e-56 | -8.615850e-47 |
| Msa0053640 | Msa0689300 | 0.851423 | 8.963471e-61 | -8.615850e-47 |
| Msa0099260 | Msa0689300 | 0.824196 | 9.199887e-54 | -8.615850e-47 |
| Msa0689300 | Msa0832760 | 0.809629 | 1.721851e-50 | -8.615850e-47 |
| Msa0689300 | Msa1087890 | 0.827947 | 1.180522e-54 | -8.615850e-47 |
| Msa0689300 | Msa1129420 | 0.834081 | 3.683520e-56 | -8.615850e-47 |
| Msa0689300 | Msa1352920 | 0.837049 | 6.538484e-57 | -8.615850e-47 |
| Msa0689300 | Msa1385970 | 0.818544 | 1.854263e-52 | -8.615850e-47 |
| Msa0689300 | Msa1417110 | 0.818763 | 1.654097e-52 | -8.615850e-47 |
| Msa0148040 | Msa0689300 | 0.824637 | 7.244858e-54 | -8.615850e-47 |
| Msa0233920 | Msa0689300 | 0.821855 | 3.234162e-53 | -8.615850e-47 |
| Msa0403750 | Msa0689300 | 0.964846 | 7.634628e-124 | -8.615850e-47 |
| Msa0403790 | Msa0689300 | 0.936643 | 1.250345e-97 | -8.615850e-47 |
| Msa0403860 | Msa0689300 | 0.936287 | 2.211381e-97 | -8.615850e-47 |
| Msa0460760 | Msa0689300 | 0.910712 | 1.377468e-82 | -8.615850e-47 |
| Msa0312640 | Msa0689300 | 0.850171 | 2.017768e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689300 | MtrunA17_Chr3g0109691 | 98.049 | 205 | 4 | 0 | 1 | 205 | 1 | 205 | 4.18e-144 | 399 |
| Msa0689300 | MtrunA17_Chr6g0487221 | 47.368 | 114 | 49 | 4 | 76 | 187 | 102 | 206 | 1.36e-21 | 88.2 |
| Msa0689300 | MtrunA17_Chr8g0389751 | 55.556 | 63 | 26 | 2 | 75 | 135 | 75 | 137 | 5.34e-15 | 69.3 |
| Msa0689300 | MtrunA17_Chr3g0136361 | 40.659 | 91 | 50 | 2 | 74 | 160 | 64 | 154 | 1.67e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689300 | AT5G56550.1 | 51.613 | 93 | 42 | 1 | 75 | 164 | 74 | 166 | 6.22e-18 | 77.8 |
| Msa0689300 | AT4G26288.1 | 56.061 | 66 | 21 | 2 | 75 | 136 | 59 | 120 | 1.84e-12 | 63.2 |
| Msa0689300 | AT5G21940.1 | 50.847 | 59 | 21 | 1 | 75 | 125 | 74 | 132 | 8.38e-11 | 60.1 |
Find 46 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAGTGGAAGTAACTTTA+TGG | 0.218762 | 4_4:+56321448 | Msa0689300:CDS |
| TAAAATGAGGTGATATAGTT+TGG | 0.239625 | 4_4:-56320705 | None:intergenic |
| TAGATTTAAAACTTGATTCT+TGG | 0.251748 | 4_4:-56321349 | None:intergenic |
| ATTAACAAATGTGAAGAGTT+TGG | 0.281541 | 4_4:+56321250 | Msa0689300:CDS |
| TTCTTTGGTGATTCAATCAT+AGG | 0.303697 | 4_4:-56320836 | None:intergenic |
| AGAGAAGACATATCACTTAA+TGG | 0.324873 | 4_4:-56321037 | None:intergenic |
| GATATAGTTTGGGGAATGTT+TGG | 0.329757 | 4_4:-56320694 | None:intergenic |
| AAAATGAGGTGATATAGTTT+GGG | 0.350977 | 4_4:-56320704 | None:intergenic |
| AACTGCTTTGTTTGCTTGAA+AGG | 0.362454 | 4_4:+56321535 | Msa0689300:exon |
| AGGATGAAGAAGATGAAGTA+GGG | 0.381879 | 4_4:-56320985 | None:intergenic |
| CTCTTGTTGTAAGGACTCTC+TGG | 0.389294 | 4_4:-56321287 | None:intergenic |
| TTCTTCTTTGAATGCAAGAA+AGG | 0.409881 | 4_4:+56321427 | Msa0689300:CDS |
| TCATCATAGTCTTCATGAAA+TGG | 0.421118 | 4_4:-56320863 | None:intergenic |
| GAGGATGAAGAAGATGAAGT+AGG | 0.424863 | 4_4:-56320986 | None:intergenic |
| GACTATGATGATATTATAGA+TGG | 0.427357 | 4_4:+56320875 | Msa0689300:CDS |
| GACTTCAACCTCTTGTTGTA+AGG | 0.429013 | 4_4:-56321296 | None:intergenic |
| GATCTATTATGAGGATGAAT+TGG | 0.430717 | 4_4:-56321482 | None:intergenic |
| TCTGATTCTGAAGTTTCAAA+TGG | 0.436088 | 4_4:+56320911 | Msa0689300:CDS |
| ACTGCTTTGTTTGCTTGAAA+GGG | 0.445401 | 4_4:+56321536 | Msa0689300:exon |
| GGAAGTGGAAGTAACTTTAT+GGG | 0.451892 | 4_4:+56321449 | Msa0689300:CDS |
| GGGTGAATTCAGCAAGTTCA+AGG | 0.456612 | 4_4:+56321396 | Msa0689300:CDS |
| GAAGTAACTTTATGGGTAGT+AGG | 0.457592 | 4_4:+56321456 | Msa0689300:CDS |
| ATTTATGGAGTTGTGATTTG+CGG | 0.468608 | 4_4:+56321603 | Msa0689300:three_prime_UTR |
| TGTCAAGGCTTGTTTCTAAG+AGG | 0.473310 | 4_4:+56321372 | Msa0689300:CDS |
| GTGTTTGTAATTGTTGCTTG+TGG | 0.494459 | 4_4:+56320753 | Msa0689300:five_prime_UTR |
| GTCAAGGCTTGTTTCTAAGA+GGG | 0.514801 | 4_4:+56321373 | Msa0689300:CDS |
| AGTTTGATTAGAGATATTGT+TGG | 0.516221 | 4_4:-56321516 | None:intergenic |
| CTAGTAGATGATCTATTATG+AGG | 0.516955 | 4_4:-56321491 | None:intergenic |
| TTGAATGCAAGAAAGGGAAG+TGG | 0.520993 | 4_4:+56321434 | Msa0689300:CDS |
| TTGAAGTCGTGTAGAAGCTA+TGG | 0.524825 | 4_4:+56321311 | Msa0689300:CDS |
| TCTTCTTTGAATGCAAGAAA+GGG | 0.526225 | 4_4:+56321428 | Msa0689300:CDS |
| CAGAGAGTCCTTACAACAAG+AGG | 0.555710 | 4_4:+56321288 | Msa0689300:CDS |
| TGAAGATATCTAATTAGAGA+TGG | 0.556375 | 4_4:+56320796 | Msa0689300:exon |
| CAAGGCTTGTTTCTAAGAGG+GGG | 0.561375 | 4_4:+56321375 | Msa0689300:CDS |
| GGATGAAGAAGATGAAGTAG+GGG | 0.561740 | 4_4:-56320984 | None:intergenic |
| GGTGAATTCAGCAAGTTCAA+GGG | 0.566478 | 4_4:+56321397 | Msa0689300:CDS |
| AACAAATGTGAAGAGTTTGG+AGG | 0.582899 | 4_4:+56321253 | Msa0689300:CDS |
| CTATTATGAGGATGAATTGG+TGG | 0.590564 | 4_4:-56321479 | None:intergenic |
| GTGAATTCAGCAAGTTCAAG+GGG | 0.594667 | 4_4:+56321398 | Msa0689300:CDS |
| AAGTCGTGTAGAAGCTATGG+AGG | 0.596687 | 4_4:+56321314 | Msa0689300:CDS |
| TCAAGGCTTGTTTCTAAGAG+GGG | 0.607183 | 4_4:+56321374 | Msa0689300:CDS |
| GGACTTTCAAAATTCTACCA+AGG | 0.610945 | 4_4:+56321206 | Msa0689300:CDS |
| AAATGAGGTGATATAGTTTG+GGG | 0.632419 | 4_4:-56320703 | None:intergenic |
| AAGGCTTGTTTCTAAGAGGG+GGG | 0.642551 | 4_4:+56321376 | Msa0689300:CDS |
| TTCAAGTTGATGAGTAGATG+AGG | 0.689907 | 4_4:-56321005 | None:intergenic |
| AGTCGTGTAGAAGCTATGGA+GGG | 0.698235 | 4_4:+56321315 | Msa0689300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATAAGAAAAAAAAGA+AGG | - | chr4_4:56320661-56320680 | None:intergenic | 10.0% |
| !! | ATTAAAAAAAGCTATAAAAA+TGG | - | chr4_4:56321101-56321120 | None:intergenic | 10.0% |
| !!! | ATTTTTATAGCTTTTTTTAA+TGG | + | chr4_4:56321100-56321119 | Msa0689300:intron | 10.0% |
| !!! | TTTTTATAGCTTTTTTTAAT+GGG | + | chr4_4:56321101-56321120 | Msa0689300:intron | 10.0% |
| !!! | TTTTTGTTTAATCAAATTTT+TGG | + | chr4_4:56321571-56321590 | Msa0689300:three_prime_UTR | 10.0% |
| !! | TATATATAAGAAAAAAAAGA+AGG | - | chr4_4:56320661-56320680 | None:intergenic | 10.0% |
| !! | ATTAAAAAAAGCTATAAAAA+TGG | - | chr4_4:56321101-56321120 | None:intergenic | 10.0% |
| !!! | ATTTTTATAGCTTTTTTTAA+TGG | + | chr4_4:56321100-56321119 | Msa0689300:intron | 10.0% |
| !!! | TTTTTATAGCTTTTTTTAAT+GGG | + | chr4_4:56321101-56321120 | Msa0689300:intron | 10.0% |
| !!! | TTTTTGTTTAATCAAATTTT+TGG | + | chr4_4:56321571-56321590 | Msa0689300:three_prime_UTR | 10.0% |
| !!! | TTTTCTAGGAAAATAAAATG+AGG | - | chr4_4:56320721-56320740 | None:intergenic | 20.0% |
| !! | AAAAAAAGCTATAAAAATGG+TGG | - | chr4_4:56321098-56321117 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCATATTTGCTTT+TGG | + | chr4_4:56321132-56321151 | Msa0689300:intron | 20.0% |
| !!! | TTCTTTTCATATTTGCTTTT+GGG | + | chr4_4:56321133-56321152 | Msa0689300:intron | 20.0% |
| !!! | CTAAAGTTTGTGTTTTTTAT+AGG | + | chr4_4:56321180-56321199 | Msa0689300:intron | 20.0% |
| !!! | TAGATTTAAAACTTGATTCT+TGG | - | chr4_4:56321352-56321371 | None:intergenic | 20.0% |
| !!! | TTTTGGATGTTGTTAATTTA+TGG | + | chr4_4:56321588-56321607 | Msa0689300:three_prime_UTR | 20.0% |
| !!! | TTTTCTAGGAAAATAAAATG+AGG | - | chr4_4:56320721-56320740 | None:intergenic | 20.0% |
| !! | AAAAAAAGCTATAAAAATGG+TGG | - | chr4_4:56321098-56321117 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCATATTTGCTTT+TGG | + | chr4_4:56321132-56321151 | Msa0689300:intron | 20.0% |
| !!! | TTCTTTTCATATTTGCTTTT+GGG | + | chr4_4:56321133-56321152 | Msa0689300:intron | 20.0% |
| !!! | CTAAAGTTTGTGTTTTTTAT+AGG | + | chr4_4:56321180-56321199 | Msa0689300:intron | 20.0% |
| !!! | TAGATTTAAAACTTGATTCT+TGG | - | chr4_4:56321352-56321371 | None:intergenic | 20.0% |
| !!! | TTTTGGATGTTGTTAATTTA+TGG | + | chr4_4:56321588-56321607 | Msa0689300:three_prime_UTR | 20.0% |
| !! | AAGAAAAAAAAGAAGGTATG+AGG | - | chr4_4:56320654-56320673 | None:intergenic | 25.0% |
| ! | AAAATGAGGTGATATAGTTT+GGG | - | chr4_4:56320707-56320726 | None:intergenic | 25.0% |
| ! | TAAAATGAGGTGATATAGTT+TGG | - | chr4_4:56320708-56320727 | None:intergenic | 25.0% |
| !!! | ACATGCACTTTAATTTTTCT+AGG | - | chr4_4:56320735-56320754 | None:intergenic | 25.0% |
| ! | TGAAGATATCTAATTAGAGA+TGG | + | chr4_4:56320796-56320815 | Msa0689300:exon | 25.0% |
| ! | GACTATGATGATATTATAGA+TGG | + | chr4_4:56320875-56320894 | Msa0689300:CDS | 25.0% |
| ! | GACAAAAAAACTTACTTGAT+TGG | - | chr4_4:56321076-56321095 | None:intergenic | 25.0% |
| !!! | AAGTTTGTGTTTTTTATAGG+AGG | + | chr4_4:56321183-56321202 | Msa0689300:intron | 25.0% |
| !!! | AGTTTGTGTTTTTTATAGGA+GGG | + | chr4_4:56321184-56321203 | Msa0689300:intron | 25.0% |
| !! | TAAAAGATTGTGATTTTCCT+TGG | - | chr4_4:56321226-56321245 | None:intergenic | 25.0% |
| ! | ATTAACAAATGTGAAGAGTT+TGG | + | chr4_4:56321250-56321269 | Msa0689300:CDS | 25.0% |
| !!! | CAAGTTTTAAATCTATGTCA+AGG | + | chr4_4:56321357-56321376 | Msa0689300:CDS | 25.0% |
| ! | AGTTTGATTAGAGATATTGT+TGG | - | chr4_4:56321519-56321538 | None:intergenic | 25.0% |
| !! | AAGAAAAAAAAGAAGGTATG+AGG | - | chr4_4:56320654-56320673 | None:intergenic | 25.0% |
| ! | AAAATGAGGTGATATAGTTT+GGG | - | chr4_4:56320707-56320726 | None:intergenic | 25.0% |
| ! | TAAAATGAGGTGATATAGTT+TGG | - | chr4_4:56320708-56320727 | None:intergenic | 25.0% |
| !!! | ACATGCACTTTAATTTTTCT+AGG | - | chr4_4:56320735-56320754 | None:intergenic | 25.0% |
| ! | TGAAGATATCTAATTAGAGA+TGG | + | chr4_4:56320796-56320815 | Msa0689300:exon | 25.0% |
| ! | GACTATGATGATATTATAGA+TGG | + | chr4_4:56320875-56320894 | Msa0689300:CDS | 25.0% |
| ! | GACAAAAAAACTTACTTGAT+TGG | - | chr4_4:56321076-56321095 | None:intergenic | 25.0% |
| !!! | AAGTTTGTGTTTTTTATAGG+AGG | + | chr4_4:56321183-56321202 | Msa0689300:intron | 25.0% |
| !!! | AGTTTGTGTTTTTTATAGGA+GGG | + | chr4_4:56321184-56321203 | Msa0689300:intron | 25.0% |
| !! | TAAAAGATTGTGATTTTCCT+TGG | - | chr4_4:56321226-56321245 | None:intergenic | 25.0% |
| ! | ATTAACAAATGTGAAGAGTT+TGG | + | chr4_4:56321250-56321269 | Msa0689300:CDS | 25.0% |
| !!! | CAAGTTTTAAATCTATGTCA+AGG | + | chr4_4:56321357-56321376 | Msa0689300:CDS | 25.0% |
| ! | AGTTTGATTAGAGATATTGT+TGG | - | chr4_4:56321519-56321538 | None:intergenic | 25.0% |
| ! | AAAAAAAAGAAGGTATGAGG+TGG | - | chr4_4:56320651-56320670 | None:intergenic | 30.0% |
| AAATGAGGTGATATAGTTTG+GGG | - | chr4_4:56320706-56320725 | None:intergenic | 30.0% | |
| ! | TTCTTTGGTGATTCAATCAT+AGG | - | chr4_4:56320839-56320858 | None:intergenic | 30.0% |
| ! | TCATGAAATGGTCTTTTCTT+TGG | - | chr4_4:56320854-56320873 | None:intergenic | 30.0% |
| TCATCATAGTCTTCATGAAA+TGG | - | chr4_4:56320866-56320885 | None:intergenic | 30.0% | |
| !! | TCTGATTCTGAAGTTTCAAA+TGG | + | chr4_4:56320911-56320930 | Msa0689300:CDS | 30.0% |
| AGAGAAGACATATCACTTAA+TGG | - | chr4_4:56321040-56321059 | None:intergenic | 30.0% | |
| !!! | GTTTGTGTTTTTTATAGGAG+GGG | + | chr4_4:56321185-56321204 | Msa0689300:intron | 30.0% |
| TTCTTCTTTGAATGCAAGAA+AGG | + | chr4_4:56321427-56321446 | Msa0689300:CDS | 30.0% | |
| TCTTCTTTGAATGCAAGAAA+GGG | + | chr4_4:56321428-56321447 | Msa0689300:CDS | 30.0% | |
| GATCTATTATGAGGATGAAT+TGG | - | chr4_4:56321485-56321504 | None:intergenic | 30.0% | |
| CTAGTAGATGATCTATTATG+AGG | - | chr4_4:56321494-56321513 | None:intergenic | 30.0% | |
| ATTTATGGAGTTGTGATTTG+CGG | + | chr4_4:56321603-56321622 | Msa0689300:three_prime_UTR | 30.0% | |
| ! | AAAAAAAAGAAGGTATGAGG+TGG | - | chr4_4:56320651-56320670 | None:intergenic | 30.0% |
| AAATGAGGTGATATAGTTTG+GGG | - | chr4_4:56320706-56320725 | None:intergenic | 30.0% | |
| ! | TTCTTTGGTGATTCAATCAT+AGG | - | chr4_4:56320839-56320858 | None:intergenic | 30.0% |
| ! | TCATGAAATGGTCTTTTCTT+TGG | - | chr4_4:56320854-56320873 | None:intergenic | 30.0% |
| TCATCATAGTCTTCATGAAA+TGG | - | chr4_4:56320866-56320885 | None:intergenic | 30.0% | |
| !! | TCTGATTCTGAAGTTTCAAA+TGG | + | chr4_4:56320911-56320930 | Msa0689300:CDS | 30.0% |
| AGAGAAGACATATCACTTAA+TGG | - | chr4_4:56321040-56321059 | None:intergenic | 30.0% | |
| !!! | GTTTGTGTTTTTTATAGGAG+GGG | + | chr4_4:56321185-56321204 | Msa0689300:intron | 30.0% |
| TTCTTCTTTGAATGCAAGAA+AGG | + | chr4_4:56321427-56321446 | Msa0689300:CDS | 30.0% | |
| TCTTCTTTGAATGCAAGAAA+GGG | + | chr4_4:56321428-56321447 | Msa0689300:CDS | 30.0% | |
| GATCTATTATGAGGATGAAT+TGG | - | chr4_4:56321485-56321504 | None:intergenic | 30.0% | |
| CTAGTAGATGATCTATTATG+AGG | - | chr4_4:56321494-56321513 | None:intergenic | 30.0% | |
| ATTTATGGAGTTGTGATTTG+CGG | + | chr4_4:56321603-56321622 | Msa0689300:three_prime_UTR | 30.0% | |
| GATATAGTTTGGGGAATGTT+TGG | - | chr4_4:56320697-56320716 | None:intergenic | 35.0% | |
| ! | GTGTTTGTAATTGTTGCTTG+TGG | + | chr4_4:56320753-56320772 | Msa0689300:five_prime_UTR | 35.0% |
| AGGATGAAGAAGATGAAGTA+GGG | - | chr4_4:56320988-56321007 | None:intergenic | 35.0% | |
| !! | TTCAAGTTGATGAGTAGATG+AGG | - | chr4_4:56321008-56321027 | None:intergenic | 35.0% |
| GGACTTTCAAAATTCTACCA+AGG | + | chr4_4:56321206-56321225 | Msa0689300:CDS | 35.0% | |
| AACAAATGTGAAGAGTTTGG+AGG | + | chr4_4:56321253-56321272 | Msa0689300:CDS | 35.0% | |
| GGAAGTGGAAGTAACTTTAT+GGG | + | chr4_4:56321449-56321468 | Msa0689300:CDS | 35.0% | |
| GAAGTAACTTTATGGGTAGT+AGG | + | chr4_4:56321456-56321475 | Msa0689300:CDS | 35.0% | |
| CTATTATGAGGATGAATTGG+TGG | - | chr4_4:56321482-56321501 | None:intergenic | 35.0% | |
| !! | AACTGCTTTGTTTGCTTGAA+AGG | + | chr4_4:56321535-56321554 | Msa0689300:exon | 35.0% |
| !! | ACTGCTTTGTTTGCTTGAAA+GGG | + | chr4_4:56321536-56321555 | Msa0689300:exon | 35.0% |
| GATATAGTTTGGGGAATGTT+TGG | - | chr4_4:56320697-56320716 | None:intergenic | 35.0% | |
| ! | GTGTTTGTAATTGTTGCTTG+TGG | + | chr4_4:56320753-56320772 | Msa0689300:five_prime_UTR | 35.0% |
| AGGATGAAGAAGATGAAGTA+GGG | - | chr4_4:56320988-56321007 | None:intergenic | 35.0% | |
| !! | TTCAAGTTGATGAGTAGATG+AGG | - | chr4_4:56321008-56321027 | None:intergenic | 35.0% |
| GGACTTTCAAAATTCTACCA+AGG | + | chr4_4:56321206-56321225 | Msa0689300:CDS | 35.0% | |
| AACAAATGTGAAGAGTTTGG+AGG | + | chr4_4:56321253-56321272 | Msa0689300:CDS | 35.0% | |
| GGAAGTGGAAGTAACTTTAT+GGG | + | chr4_4:56321449-56321468 | Msa0689300:CDS | 35.0% | |
| GAAGTAACTTTATGGGTAGT+AGG | + | chr4_4:56321456-56321475 | Msa0689300:CDS | 35.0% | |
| CTATTATGAGGATGAATTGG+TGG | - | chr4_4:56321482-56321501 | None:intergenic | 35.0% | |
| !! | AACTGCTTTGTTTGCTTGAA+AGG | + | chr4_4:56321535-56321554 | Msa0689300:exon | 35.0% |
| !! | ACTGCTTTGTTTGCTTGAAA+GGG | + | chr4_4:56321536-56321555 | Msa0689300:exon | 35.0% |
| ! | AAAAAGAAGGTATGAGGTGG+TGG | - | chr4_4:56320648-56320667 | None:intergenic | 40.0% |
| GGATGAAGAAGATGAAGTAG+GGG | - | chr4_4:56320987-56321006 | None:intergenic | 40.0% | |
| GAGGATGAAGAAGATGAAGT+AGG | - | chr4_4:56320989-56321008 | None:intergenic | 40.0% | |
| ! | GACTTCAACCTCTTGTTGTA+AGG | - | chr4_4:56321299-56321318 | None:intergenic | 40.0% |
| TTGAAGTCGTGTAGAAGCTA+TGG | + | chr4_4:56321311-56321330 | Msa0689300:CDS | 40.0% | |
| !! | TGTCAAGGCTTGTTTCTAAG+AGG | + | chr4_4:56321372-56321391 | Msa0689300:CDS | 40.0% |
| !! | GTCAAGGCTTGTTTCTAAGA+GGG | + | chr4_4:56321373-56321392 | Msa0689300:CDS | 40.0% |
| !! | TCAAGGCTTGTTTCTAAGAG+GGG | + | chr4_4:56321374-56321393 | Msa0689300:CDS | 40.0% |
| GGTGAATTCAGCAAGTTCAA+GGG | + | chr4_4:56321397-56321416 | Msa0689300:CDS | 40.0% | |
| GTGAATTCAGCAAGTTCAAG+GGG | + | chr4_4:56321398-56321417 | Msa0689300:CDS | 40.0% | |
| TTGAATGCAAGAAAGGGAAG+TGG | + | chr4_4:56321434-56321453 | Msa0689300:CDS | 40.0% | |
| GGGAAGTGGAAGTAACTTTA+TGG | + | chr4_4:56321448-56321467 | Msa0689300:CDS | 40.0% | |
| ! | AAAAAGAAGGTATGAGGTGG+TGG | - | chr4_4:56320648-56320667 | None:intergenic | 40.0% |
| GGATGAAGAAGATGAAGTAG+GGG | - | chr4_4:56320987-56321006 | None:intergenic | 40.0% | |
| GAGGATGAAGAAGATGAAGT+AGG | - | chr4_4:56320989-56321008 | None:intergenic | 40.0% | |
| ! | GACTTCAACCTCTTGTTGTA+AGG | - | chr4_4:56321299-56321318 | None:intergenic | 40.0% |
| TTGAAGTCGTGTAGAAGCTA+TGG | + | chr4_4:56321311-56321330 | Msa0689300:CDS | 40.0% | |
| !! | TGTCAAGGCTTGTTTCTAAG+AGG | + | chr4_4:56321372-56321391 | Msa0689300:CDS | 40.0% |
| !! | GTCAAGGCTTGTTTCTAAGA+GGG | + | chr4_4:56321373-56321392 | Msa0689300:CDS | 40.0% |
| !! | TCAAGGCTTGTTTCTAAGAG+GGG | + | chr4_4:56321374-56321393 | Msa0689300:CDS | 40.0% |
| GGTGAATTCAGCAAGTTCAA+GGG | + | chr4_4:56321397-56321416 | Msa0689300:CDS | 40.0% | |
| GTGAATTCAGCAAGTTCAAG+GGG | + | chr4_4:56321398-56321417 | Msa0689300:CDS | 40.0% | |
| TTGAATGCAAGAAAGGGAAG+TGG | + | chr4_4:56321434-56321453 | Msa0689300:CDS | 40.0% | |
| GGGAAGTGGAAGTAACTTTA+TGG | + | chr4_4:56321448-56321467 | Msa0689300:CDS | 40.0% | |
| ! | CTCTTGTTGTAAGGACTCTC+TGG | - | chr4_4:56321290-56321309 | None:intergenic | 45.0% |
| CAGAGAGTCCTTACAACAAG+AGG | + | chr4_4:56321288-56321307 | Msa0689300:CDS | 45.0% | |
| AAGTCGTGTAGAAGCTATGG+AGG | + | chr4_4:56321314-56321333 | Msa0689300:CDS | 45.0% | |
| AGTCGTGTAGAAGCTATGGA+GGG | + | chr4_4:56321315-56321334 | Msa0689300:CDS | 45.0% | |
| !! | CAAGGCTTGTTTCTAAGAGG+GGG | + | chr4_4:56321375-56321394 | Msa0689300:CDS | 45.0% |
| !! | AAGGCTTGTTTCTAAGAGGG+GGG | + | chr4_4:56321376-56321395 | Msa0689300:CDS | 45.0% |
| GGGTGAATTCAGCAAGTTCA+AGG | + | chr4_4:56321396-56321415 | Msa0689300:CDS | 45.0% | |
| ! | CTCTTGTTGTAAGGACTCTC+TGG | - | chr4_4:56321290-56321309 | None:intergenic | 45.0% |
| CAGAGAGTCCTTACAACAAG+AGG | + | chr4_4:56321288-56321307 | Msa0689300:CDS | 45.0% | |
| AAGTCGTGTAGAAGCTATGG+AGG | + | chr4_4:56321314-56321333 | Msa0689300:CDS | 45.0% | |
| AGTCGTGTAGAAGCTATGGA+GGG | + | chr4_4:56321315-56321334 | Msa0689300:CDS | 45.0% | |
| !! | CAAGGCTTGTTTCTAAGAGG+GGG | + | chr4_4:56321375-56321394 | Msa0689300:CDS | 45.0% |
| !! | AAGGCTTGTTTCTAAGAGGG+GGG | + | chr4_4:56321376-56321395 | Msa0689300:CDS | 45.0% |
| GGGTGAATTCAGCAAGTTCA+AGG | + | chr4_4:56321396-56321415 | Msa0689300:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 56320617 | 56321632 | 56320617 | ID=Msa0689300;Name=Msa0689300 |
| chr4_4 | mRNA | 56320617 | 56321632 | 56320617 | ID=Msa0689300-mRNA-1;Parent=Msa0689300;Name=Msa0689300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=198|1|1|1|1|1|2|79|205 |
| chr4_4 | exon | 56320617 | 56321080 | 56320617 | ID=Msa0689300-mRNA-1:exon:14823;Parent=Msa0689300-mRNA-1 |
| chr4_4 | exon | 56321202 | 56321632 | 56321202 | ID=Msa0689300-mRNA-1:exon:14824;Parent=Msa0689300-mRNA-1 |
| chr4_4 | five_prime_UTR | 56320617 | 56320814 | 56320617 | ID=Msa0689300-mRNA-1:five_prime_utr;Parent=Msa0689300-mRNA-1 |
| chr4_4 | CDS | 56320815 | 56321080 | 56320815 | ID=Msa0689300-mRNA-1:cds;Parent=Msa0689300-mRNA-1 |
| chr4_4 | CDS | 56321202 | 56321553 | 56321202 | ID=Msa0689300-mRNA-1:cds;Parent=Msa0689300-mRNA-1 |
| chr4_4 | three_prime_UTR | 56321554 | 56321632 | 56321554 | ID=Msa0689300-mRNA-1:three_prime_utr;Parent=Msa0689300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
