AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0151380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151380 MtrunA17_Chr1g0159921 98.998 499 5 0 1 499 1 499 0.0 1031
Msa0151380 MtrunA17_Chr3g0136771 26.645 304 189 12 210 492 99 389 9.77e-26 110
Msa0151380 MtrunA17_Chr8g0378671 23.373 338 179 18 213 498 85 394 2.08e-12 69.3
Msa0151380 MtrunA17_Chr8g0378721 21.084 332 195 13 213 498 85 395 1.20e-11 67.0
Msa0151380 MtrunA17_Chr8g0378701 21.594 389 221 16 121 455 8 366 2.64e-11 65.5
Msa0151380 MtrunA17_Chr4g0027961 25.862 174 109 6 210 364 93 265 3.39e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151380 AT1G44446.1 75.595 504 116 2 3 499 4 507 0.0 786
Msa0151380 AT1G44446.2 75.362 483 111 3 1 475 1 483 0.0 745
Msa0151380 AT1G44446.4 78.519 405 87 0 95 499 1 405 0.0 671
Msa0151380 AT1G44446.3 72.280 386 99 3 1 378 1 386 0.0 559
Msa0151380 AT2G24820.1 25.658 304 187 11 213 492 88 376 7.56e-25 108
Msa0151380 AT3G44880.1 26.667 225 138 9 210 410 85 306 6.81e-12 68.2

Find 160 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACAACAATCCCCTTTA+AGG 0.138946 1_4:-13492822 None:intergenic
TGCTTTCTCTGCTGACTTAA+AGG 0.172252 1_4:+13490127 Msa0151380:CDS
ATCCTAATTTAAAGAATTTC+TGG 0.191900 1_4:+13490096 Msa0151380:CDS
AGGAACCATGGGTTATCTTT+AGG 0.213560 1_4:+13490329 Msa0151380:CDS
CAGGGTTTGAAAGGTAAATT+TGG 0.219218 1_4:+13488966 Msa0151380:intron
ACAGTGTTAAATCCAATTTA+TGG 0.235520 1_4:+13492764 Msa0151380:three_prime_UTR
GCTTTGTCCTTTCAATTTCC+CGG 0.258774 1_4:-13491690 None:intergenic
CTCCATAGATGTTCCATAAA+AGG 0.264680 1_4:-13491830 None:intergenic
CAGGTGTGTTGAACATTCTT+TGG 0.268435 1_4:-13491714 None:intergenic
TACCAGAAATTCTTTAAATT+AGG 0.270588 1_4:-13490098 None:intergenic
TGGTATAACCACACCCTTAA+AGG 0.278106 1_4:+13492808 Msa0151380:three_prime_UTR
GGTTGAACACGGATTACTTT+TGG 0.283837 1_4:+13490936 Msa0151380:CDS
CATCTGGTCTGCAAGGATAT+TGG 0.286825 1_4:+13491597 Msa0151380:CDS
CTTTATTCATTCTCTCTTGT+TGG 0.291005 1_4:-13492391 None:intergenic
CCTTCTTTACTACCTCCTTC+TGG 0.291205 1_4:+13490744 Msa0151380:CDS
CTTAGTGGCGCTTTAGATCT+TGG 0.291618 1_4:-13489056 None:intergenic
AAGATGGTGAAACCATAAAT+TGG 0.296753 1_4:-13492776 None:intergenic
GGAACCATGGGTTATCTTTA+GGG 0.299759 1_4:+13490330 Msa0151380:CDS
TATGGTTTCACCATCTTAGA+TGG 0.312209 1_4:+13492782 Msa0151380:three_prime_UTR
GTCGATTGGCACCATGAAAA+AGG 0.314224 1_4:+13489723 Msa0151380:CDS
AATGTCGAAGTATGAGTAAA+AGG 0.321362 1_4:-13490985 None:intergenic
AAACTCTTGCTTCAGATATA+TGG 0.329301 1_4:-13489887 None:intergenic
ATCTGGTCTGCAAGGATATT+GGG 0.329604 1_4:+13491598 Msa0151380:CDS
AGCAAGAGTTTCTACTGCTT+TGG 0.334343 1_4:+13489899 Msa0151380:CDS
ACATTTAGCATTCGAGTAGA+TGG 0.343874 1_4:-13490639 None:intergenic
AACCTTGCATTAGAACTTCA+TGG 0.356961 1_4:+13492621 Msa0151380:three_prime_UTR
AAAGGATCTAGCTGGGTTGC+AGG 0.360380 1_4:+13489741 Msa0151380:CDS
ACAGATTGTCATGGAACTTC+CGG 0.364114 1_4:+13490915 Msa0151380:intron
ACACTGTACACAAATTTAAG+AGG 0.365108 1_4:-13492748 None:intergenic
ACTAAGTAAAGGAAAAGTTT+TGG 0.365161 1_4:+13489073 Msa0151380:CDS
TTTGGAGTGTTTGCTGTGTT+TGG 0.368010 1_4:+13488984 Msa0151380:CDS
ATGCTTCTTAAGATCCAATA+AGG 0.383649 1_4:+13492567 Msa0151380:three_prime_UTR
AAGAAAAGCTTAAATGTATC+AGG 0.384915 1_4:+13490056 Msa0151380:CDS
ACTCGCTTACATGGAAGAAT+TGG 0.386034 1_4:+13489926 Msa0151380:CDS
CATACAACAATCCCCTTTAA+GGG 0.387303 1_4:-13492821 None:intergenic
ATCATGCCTAGCTACTTCTA+TGG 0.388459 1_4:-13489108 None:intergenic
AAGAAGGGATGATCTGGATT+TGG 0.390925 1_4:+13490691 Msa0151380:CDS
CCAAGCTTGTCATAGGTAAC+TGG 0.395981 1_4:-13492436 None:intergenic
GGATCCCTATCCGATTGATA+TGG 0.397893 1_4:+13491619 Msa0151380:CDS
GGTATAACCACACCCTTAAA+GGG 0.399225 1_4:+13492809 Msa0151380:three_prime_UTR
CTTCCAAGCTTGACACCAAA+AGG 0.403732 1_4:+13487972 Msa0151380:CDS
TGAATAAAGGTGCAAATGTA+TGG 0.404916 1_4:+13492405 Msa0151380:CDS
GGAGTTTCGACCACCTTGTA+TGG 0.406336 1_4:+13491640 Msa0151380:CDS
TTGAGAAAGAAGGGATGATC+TGG 0.411706 1_4:+13490685 Msa0151380:CDS
TTGGAGGGATGCATTGGAAA+AGG 0.412803 1_4:+13492474 Msa0151380:three_prime_UTR
CTAAGGGATGGAGTGTTCCT+AGG 0.413929 1_4:+13491010 Msa0151380:CDS
CCTTACTCCAAGCTTGTCAT+AGG 0.414297 1_4:-13492443 None:intergenic
AGCAGTAGCTATGGCATTCA+TGG 0.421129 1_4:-13487918 None:intergenic
TTGGAGTAAGGTATAGGCTT+TGG 0.424370 1_4:+13492455 Msa0151380:exon
AAGAAAGAGAGGTACCCTTT+TGG 0.427629 1_4:-13487987 None:intergenic
GTATGGTTCTATCAACCATT+GGG 0.429913 1_4:+13491657 Msa0151380:CDS
TTGGAAGTTCTACAAAAGAT+AGG 0.437166 1_4:-13487956 None:intergenic
TCATATCAACACAACATTCC+CGG 0.445027 1_4:-13492669 None:intergenic
TTAATTATTGTGTGTGTTGA+AGG 0.445378 1_4:-13492512 None:intergenic
ACAAGCTTGGAGTAAGGTAT+AGG 0.446291 1_4:+13492449 Msa0151380:exon
AAAAGTAATCCGTGTTCAAC+CGG 0.447132 1_4:-13490934 None:intergenic
AAGTCAGCAGAGAAAGCAAC+AGG 0.447177 1_4:-13490122 None:intergenic
CTTTGTCCTTTCAATTTCCC+GGG 0.450716 1_4:-13491689 None:intergenic
TTAGGATGGTATGACTGAAC+TGG 0.452128 1_4:-13490080 None:intergenic
GGGTGCGATATTTGATGTAC+AGG 0.456724 1_4:+13489031 Msa0151380:CDS
AGGGGTAAAGATGGCAAACC+TGG 0.457895 1_4:+13490349 Msa0151380:CDS
CCAGAAGGAGGTAGTAAAGA+AGG 0.468373 1_4:-13490744 None:intergenic
TAAAAGGCATATGCTTAAGA+AGG 0.468665 1_4:-13491814 None:intergenic
CAACAAGAGAGAATGAATAA+AGG 0.472000 1_4:+13492392 Msa0151380:CDS
ATGTCGAAGTATGAGTAAAA+GGG 0.472157 1_4:-13490984 None:intergenic
ATGATATTGAGTACTTAGAT+TGG 0.472398 1_4:+13489126 Msa0151380:CDS
TGTATGGTTCTATCAACCAT+TGG 0.476351 1_4:+13491656 Msa0151380:CDS
CATCATGCTCCTCCATGAAA+AGG 0.476387 1_4:+13489172 Msa0151380:CDS
TAAAGCAGAAGCAGTAGCTA+TGG 0.478061 1_4:-13487927 None:intergenic
TCATCTTGGCTCTGTAAATG+AGG 0.484207 1_4:+13490411 Msa0151380:CDS
ATCCCTTCTTTCTCAAAACA+TGG 0.488856 1_4:-13490678 None:intergenic
GGTTCCTCAAAACATTCCAT+TGG 0.490124 1_4:-13490313 None:intergenic
AACAATCCCCTTTAAGGGTG+TGG 0.490466 1_4:-13492816 None:intergenic
TAGGCTTTGGAGGGATGCAT+TGG 0.491835 1_4:+13492468 Msa0151380:three_prime_UTR
GAGTAAGGTATAGGCTTTGG+AGG 0.496119 1_4:+13492458 Msa0151380:exon
GTTATCTTTAGGGGTAAAGA+TGG 0.497489 1_4:+13490340 Msa0151380:CDS
GTTCCTCAAAACATTCCATT+GGG 0.498608 1_4:-13490312 None:intergenic
AGAGCATGTCCCCTTCATCT+TGG 0.499561 1_4:+13490397 Msa0151380:CDS
ACCATTGGGATTTCGAAGCC+CGG 0.501562 1_4:+13491671 Msa0151380:CDS
TTTGGATAAACTCGCTTACA+TGG 0.502971 1_4:+13489917 Msa0151380:CDS
TGGAGGGATGCATTGGAAAA+GGG 0.507380 1_4:+13492475 Msa0151380:three_prime_UTR
TTCACCATCTTAGATGGTGG+TGG 0.507584 1_4:+13492788 Msa0151380:three_prime_UTR
AGAAATTCTTTAAATTAGGA+TGG 0.513147 1_4:-13490094 None:intergenic
CTATGAAAGTGATGAGAAGA+AGG 0.513839 1_4:-13487895 None:intergenic
ACAGATTTATCAGAAGTACT+TGG 0.516953 1_4:-13490008 None:intergenic
GATTGTAACTCAAACCAGTC+AGG 0.519297 1_4:-13492876 None:intergenic
AAACTCCATATCAATCGGAT+AGG 0.523237 1_4:-13491624 None:intergenic
TCATACTTCGACATTTGCTA+AGG 0.523457 1_4:+13490993 Msa0151380:CDS
ATCAACCTAGTGAAGCTACC+CGG 0.523575 1_4:+13492650 Msa0151380:three_prime_UTR
AGCAGACATGTAGTTGGTGC+AGG 0.524754 1_4:-13491733 None:intergenic
CGATGAATACTAACCGTGGT+AGG 0.526765 1_4:-13490449 None:intergenic
ATTGCTATATAGAATGTCAC+TGG 0.528652 1_4:+13491781 Msa0151380:CDS
GGTCGAAACTCCATATCAAT+CGG 0.530169 1_4:-13491629 None:intergenic
GTTGATTAAGAATTCCTGAC+TGG 0.530223 1_4:+13492862 Msa0151380:three_prime_UTR
AAGAAGGAAGTGATGCTGCT+GGG 0.530413 1_4:-13490728 None:intergenic
TTTCACAAAACAGATTGTCA+TGG 0.531019 1_4:+13490906 Msa0151380:intron
TCTAAAGCGCCACTAAGTAA+AGG 0.531979 1_4:+13489062 Msa0151380:CDS
CATTTACAGAGCCAAGATGA+AGG 0.535455 1_4:-13490408 None:intergenic
TCGAAGCCCGGGAAATTGAA+AGG 0.535602 1_4:+13491683 Msa0151380:CDS
CATTCCCGGGTAGCTTCACT+AGG 0.537575 1_4:-13492655 None:intergenic
AGTACTTAGATTGGCGAGCT+CGG 0.538321 1_4:+13489135 Msa0151380:CDS
AAAGAAGGAAGTGATGCTGC+TGG 0.539768 1_4:-13490729 None:intergenic
CCTATGACAAGCTTGGAGTA+AGG 0.541938 1_4:+13492443 Msa0151380:CDS
GGTTTCACCATCTTAGATGG+TGG 0.543297 1_4:+13492785 Msa0151380:three_prime_UTR
AGGGTAAGCAGACATGTAGT+TGG 0.544078 1_4:-13491739 None:intergenic
CCATTGGGATTTCGAAGCCC+GGG 0.544164 1_4:+13491672 Msa0151380:CDS
TGGAAGAATTGGTAAATGAC+AGG 0.544909 1_4:+13489937 Msa0151380:CDS
GGGATGATCTGGATTTGGCC+TGG 0.548326 1_4:+13490696 Msa0151380:CDS
CATACTTCGACATTTGCTAA+GGG 0.548563 1_4:+13490994 Msa0151380:CDS
CATATCAACACAACATTCCC+GGG 0.548627 1_4:-13492668 None:intergenic
AACTCCATATCAATCGGATA+GGG 0.548896 1_4:-13491623 None:intergenic
CCCGGGCTTCGAAATCCCAA+TGG 0.553272 1_4:-13491672 None:intergenic
CTTCGACATTTGCTAAGGGA+TGG 0.553640 1_4:+13490998 Msa0151380:CDS
AAAAGGCATATGCTTAAGAA+GGG 0.554581 1_4:-13491813 None:intergenic
ATCAGAAGTACTTGGAGAAG+AGG 0.554772 1_4:-13490000 None:intergenic
CTGTACATACTGAAAGAAGA+AGG 0.555644 1_4:+13490027 Msa0151380:CDS
CCAGTTACCTATGACAAGCT+TGG 0.556416 1_4:+13492436 Msa0151380:CDS
GCTCGTGAATTCAAGTCGAT+TGG 0.558329 1_4:+13489709 Msa0151380:CDS
ATTAGCAGAAGCACACAGAC+AGG 0.563331 1_4:+13489768 Msa0151380:CDS
TGACTTAAAGGATGATTCCA+TGG 0.565498 1_4:+13490139 Msa0151380:CDS
TATACCACCACCATCTAAGA+TGG 0.570781 1_4:-13492792 None:intergenic
ATTTACAGAGCCAAGATGAA+GGG 0.571447 1_4:-13490407 None:intergenic
GAGGATCTACGGCTAGTAGT+TGG 0.571790 1_4:+13492368 Msa0151380:CDS
AGAAGGAAGTGATGCTGCTG+GGG 0.573018 1_4:-13490727 None:intergenic
GGCTGGGAATATACGACAGA+CGG 0.577816 1_4:+13490600 Msa0151380:intron
TTCCAAGCTTGACACCAAAA+GGG 0.583881 1_4:+13487973 Msa0151380:CDS
AGCAGACAAGAAAAGTGCGT+GGG 0.586221 1_4:+13489010 Msa0151380:CDS
TTCAAGCCATAGAAGTAGCT+AGG 0.586372 1_4:+13489102 Msa0151380:CDS
TATCCTTGCAGACCAGATGC+CGG 0.588286 1_4:-13491593 None:intergenic
ACTTATTAAATACCTCGGCA+TGG 0.591232 1_4:-13490776 None:intergenic
TTCCCTATTCCAGATCCCAA+TGG 0.592203 1_4:+13490297 Msa0151380:intron
CATCTTGGCTCTGTAAATGA+GGG 0.592271 1_4:+13490412 Msa0151380:CDS
AGCCATGAAGTTCTAATGCA+AGG 0.595362 1_4:-13492623 None:intergenic
TCAACCTAGTGAAGCTACCC+GGG 0.600321 1_4:+13492651 Msa0151380:three_prime_UTR
GGGCGTGCGCAAGATCCAAA+AGG 0.603628 1_4:-13490963 None:intergenic
GACTTGAATTCACGAGCTAG+AGG 0.604846 1_4:-13489703 None:intergenic
GATGAATACTAACCGTGGTA+GGG 0.606402 1_4:-13490448 None:intergenic
ATGGAACTTCCGGTTGAACA+CGG 0.610594 1_4:+13490925 Msa0151380:CDS
ACACCGGCATCTGGTCTGCA+AGG 0.613320 1_4:+13491590 Msa0151380:CDS
TAATTATTGTGTGTGTTGAA+GGG 0.617559 1_4:-13492511 None:intergenic
TGTTCCTTTGTAGAATGACA+AGG 0.617585 1_4:+13492695 Msa0151380:three_prime_UTR
TTACCCCTAAAGATAACCCA+TGG 0.624924 1_4:-13490334 None:intergenic
TGTCGAAGTATGAGTAAAAG+GGG 0.625361 1_4:-13490983 None:intergenic
ACTTGGAGAAGAGGACGTCT+CGG 0.627193 1_4:-13489991 None:intergenic
TTTACAGAGCCAAGATGAAG+GGG 0.628748 1_4:-13490406 None:intergenic
GAACCATGGGTTATCTTTAG+GGG 0.632156 1_4:+13490331 Msa0151380:CDS
ATGGTTGATAGAACCATACA+AGG 0.639943 1_4:-13491653 None:intergenic
AGTAAGGTATAGGCTTTGGA+GGG 0.643282 1_4:+13492459 Msa0151380:exon
AAAGGCATATGCTTAAGAAG+GGG 0.645865 1_4:-13491812 None:intergenic
TGGATTTATAGTCCATGCCG+AGG 0.645907 1_4:+13490764 Msa0151380:CDS
GCATGGACTATAAATCCAGA+AGG 0.652893 1_4:-13490759 None:intergenic
GTATAACCACACCCTTAAAG+GGG 0.658662 1_4:+13492810 Msa0151380:three_prime_UTR
GAAGGAAGTGATGCTGCTGG+GGG 0.661858 1_4:-13490726 None:intergenic
ACAACCTTGTCATTCTACAA+AGG 0.662518 1_4:-13492699 None:intergenic
TGGACTATAAATCCAGAAGG+AGG 0.679360 1_4:-13490756 None:intergenic
AAGCAGACAAGAAAAGTGCG+TGG 0.679985 1_4:+13489009 Msa0151380:CDS
AATGACAAGGTTGTACTCTG+AGG 0.680999 1_4:+13492708 Msa0151380:three_prime_UTR
GCAGACAAGAAAAGTGCGTG+GGG 0.696719 1_4:+13489011 Msa0151380:CDS
GTTGATAGAACCATACAAGG+TGG 0.758266 1_4:-13491650 None:intergenic
CGTATCGCATGTCCCTACCA+CGG 0.775057 1_4:+13490436 Msa0151380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATCTAAATTTAATAG+CGG - chr1_4:13488491-13488510 None:intergenic 10.0%
!! ATTAAGTTTAAATTTAACAA+TGG - chr1_4:13488816-13488835 None:intergenic 10.0%
!! AATCAAAAGAACAAAAAAAA+AGG - chr1_4:13488036-13488055 None:intergenic 15.0%
!! TATAAATTTAGTCACTATTT+AGG + chr1_4:13488238-13488257 Msa0151380:intron 15.0%
!! TTATGAAATGATAGATTTAT+AGG + chr1_4:13491520-13491539 Msa0151380:intron 15.0%
!!! TATCATACATTGTTTCTTTT+AGG + chr1_4:13488443-13488462 Msa0151380:intron 20.0%
!!! GTTTCTTTTAGGTTTTTAAT+AGG + chr1_4:13488454-13488473 Msa0151380:intron 20.0%
!!! TTTATGTTTTTTGTGTAAAC+TGG + chr1_4:13488513-13488532 Msa0151380:intron 20.0%
!!! TTCTTTAGCTTATACTTTTT+TGG + chr1_4:13488931-13488950 Msa0151380:intron 20.0%
!!! TCTTTAGCTTATACTTTTTT+GGG + chr1_4:13488932-13488951 Msa0151380:intron 20.0%
!! TCTTAATAATCAGAAACTAT+TGG + chr1_4:13489657-13489676 Msa0151380:intron 20.0%
!! AGAAATTCTTTAAATTAGGA+TGG - chr1_4:13490097-13490116 None:intergenic 20.0%
!! ATCCTAATTTAAAGAATTTC+TGG + chr1_4:13490096-13490115 Msa0151380:CDS 20.0%
!! TACCAGAAATTCTTTAAATT+AGG - chr1_4:13490101-13490120 None:intergenic 20.0%
!! ACTATACTTATTAAATACCT+CGG - chr1_4:13490784-13490803 None:intergenic 20.0%
!! AAAAAAGAAGATAAAAGTCA+TGG + chr1_4:13490866-13490885 Msa0151380:intron 20.0%
!! TTGAATCATATCACTTATAA+GGG - chr1_4:13491051-13491070 None:intergenic 20.0%
!! ATTGAATCATATCACTTATA+AGG - chr1_4:13491052-13491071 None:intergenic 20.0%
!! TTCATGTATCATAATAACTT+AGG + chr1_4:13491184-13491203 Msa0151380:intron 20.0%
!! TCATGTATCATAATAACTTA+GGG + chr1_4:13491185-13491204 Msa0151380:intron 20.0%
!! TCAAATAAGCAAATTAAAAC+AGG - chr1_4:13491211-13491230 None:intergenic 20.0%
!! TGTTTAAATTGATGAGTATA+TGG + chr1_4:13492003-13492022 Msa0151380:intron 20.0%
!!! ATTTTTCTGAAATCAAGTTA+TGG - chr1_4:13492179-13492198 None:intergenic 20.0%
!! AAAGAGAAAAATATCCTTAT+TGG - chr1_4:13492584-13492603 None:intergenic 20.0%
!! TTCAAACTCGAATTCTAAAA+TGG - chr1_4:13488380-13488399 None:intergenic 25.0%
!! AATATTATGTCCTTTTACTC+TGG + chr1_4:13488685-13488704 Msa0151380:intron 25.0%
! AAACCATACTCTTTCATATA+TGG - chr1_4:13488907-13488926 None:intergenic 25.0%
!! AAAACTTTTCCTTTACTTAG+TGG - chr1_4:13489074-13489093 None:intergenic 25.0%
!! ACTAAGTAAAGGAAAAGTTT+TGG + chr1_4:13489073-13489092 Msa0151380:CDS 25.0%
! ATGATATTGAGTACTTAGAT+TGG + chr1_4:13489126-13489145 Msa0151380:CDS 25.0%
! TCAATTCAAACAAACATAGA+TGG - chr1_4:13489324-13489343 None:intergenic 25.0%
! TGATTATTAAGATAAGCACA+TGG - chr1_4:13489649-13489668 None:intergenic 25.0%
! ATAAGTTAATGAATTACTGC+AGG + chr1_4:13489863-13489882 Msa0151380:intron 25.0%
!! GATACATTTAAGCTTTTCTT+CGG - chr1_4:13490056-13490075 None:intergenic 25.0%
! AAGAAAAGCTTAAATGTATC+AGG + chr1_4:13490056-13490075 Msa0151380:CDS 25.0%
! CAAAAAATGGTATATTTGCA+AGG - chr1_4:13490222-13490241 None:intergenic 25.0%
! AAAGGACTAAAAGCAAAAAA+TGG - chr1_4:13490235-13490254 None:intergenic 25.0%
! AGACGACAAATATCTTTAAA+AGG - chr1_4:13490253-13490272 None:intergenic 25.0%
! TCTCATAGAAATAAATCTGT+TGG - chr1_4:13490547-13490566 None:intergenic 25.0%
! TCAATATGCGAAAATGAAAT+TGG + chr1_4:13491067-13491086 Msa0151380:intron 25.0%
! AATAAGCAGAAAACAACTTA+TGG - chr1_4:13491303-13491322 None:intergenic 25.0%
!!! CTTGTTTTATCTTTTGAAGA+GGG - chr1_4:13491761-13491780 None:intergenic 25.0%
!!! TCTTGTTTTATCTTTTGAAG+AGG - chr1_4:13491762-13491781 None:intergenic 25.0%
! TTGTGAATTGACATCAAAAA+GGG - chr1_4:13491887-13491906 None:intergenic 25.0%
! ATTGTGAATTGACATCAAAA+AGG - chr1_4:13491888-13491907 None:intergenic 25.0%
!! CTTCAAAAGGAACAAATTTT+GGG + chr1_4:13491953-13491972 Msa0151380:intron 25.0%
!!! GAACAAATTTTGGGTATTTA+TGG + chr1_4:13491962-13491981 Msa0151380:intron 25.0%
! GATTATTAACTACTCAACAT+TGG + chr1_4:13492114-13492133 Msa0151380:intron 25.0%
!!! ATCTTTCTTGTGTTTGTTTT+TGG + chr1_4:13492261-13492280 Msa0151380:intron 25.0%
! TAATTATTGTGTGTGTTGAA+GGG - chr1_4:13492514-13492533 None:intergenic 25.0%
! TTAATTATTGTGTGTGTTGA+AGG - chr1_4:13492515-13492534 None:intergenic 25.0%
! ACAGTGTTAAATCCAATTTA+TGG + chr1_4:13492764-13492783 Msa0151380:three_prime_UTR 25.0%
TTGGAAGTTCTACAAAAGAT+AGG - chr1_4:13487959-13487978 None:intergenic 30.0%
!!! GATTAGTTGCTTGTTTTGTA+AGG + chr1_4:13488052-13488071 Msa0151380:intron 30.0%
!! GTAAACTTAGCTTTTAGTCT+TGG + chr1_4:13488150-13488169 Msa0151380:intron 30.0%
!! TGACTTTAAGTTGACTTGTA+AGG + chr1_4:13488186-13488205 Msa0151380:intron 30.0%
!! TTAAGTTGACTTGTAAGGTA+AGG + chr1_4:13488191-13488210 Msa0151380:intron 30.0%
!! TAAGTTGACTTGTAAGGTAA+GGG + chr1_4:13488192-13488211 Msa0151380:intron 30.0%
! CAATTGATCTAAGATAGGTT+CGG + chr1_4:13488351-13488370 Msa0151380:intron 30.0%
TCTAAATTTAATAGCGGCAT+AGG - chr1_4:13488485-13488504 None:intergenic 30.0%
GAACTTAGAGAAACGAATTT+CGG + chr1_4:13488642-13488661 Msa0151380:intron 30.0%
! TAAAAGTACACCAGAGTAAA+AGG - chr1_4:13488698-13488717 None:intergenic 30.0%
ATACTCTTTCATATATGGAC+CGG - chr1_4:13488902-13488921 None:intergenic 30.0%
! AATTAGCTGAAACCTTTTCA+TGG - chr1_4:13489187-13489206 None:intergenic 30.0%
! GGTACTATATAACTTTTGAC+TGG + chr1_4:13489295-13489314 Msa0151380:intron 30.0%
GACATATTTGAGCTTATCTA+TGG + chr1_4:13489342-13489361 Msa0151380:intron 30.0%
CTTATTTCCATAAACTCTCT+AGG + chr1_4:13489438-13489457 Msa0151380:intron 30.0%
ATATAGGGAGAATACAACAA+CGG - chr1_4:13489608-13489627 None:intergenic 30.0%
GATGCTTTATAGCACATATA+GGG - chr1_4:13489623-13489642 None:intergenic 30.0%
TATTAAGATAAGCACATGGT+GGG - chr1_4:13489645-13489664 None:intergenic 30.0%
TTATTAAGATAAGCACATGG+TGG - chr1_4:13489646-13489665 None:intergenic 30.0%
TAATCAGAAACTATTGGTGT+AGG + chr1_4:13489663-13489682 Msa0151380:intron 30.0%
! CAAATACGAATTTGAAGCTT+TGG - chr1_4:13489829-13489848 None:intergenic 30.0%
AAACTCTTGCTTCAGATATA+TGG - chr1_4:13489890-13489909 None:intergenic 30.0%
!! ACAGATTTATCAGAAGTACT+TGG - chr1_4:13490011-13490030 None:intergenic 30.0%
CAGAAACTGAAATTTCCTAA+TGG + chr1_4:13490567-13490586 Msa0151380:intron 30.0%
AACTGAAATTTCCTAATGGT+TGG + chr1_4:13490571-13490590 Msa0151380:intron 30.0%
!!! ATTCCATGTTTTGAGAAAGA+AGG + chr1_4:13490675-13490694 Msa0151380:CDS 30.0%
!!! TTCCATGTTTTGAGAAAGAA+GGG + chr1_4:13490676-13490695 Msa0151380:CDS 30.0%
TAAGTATAGTCTGTCCTAAT+AGG + chr1_4:13490794-13490813 Msa0151380:intron 30.0%
CATAGCTTAGAATACCTATT+AGG - chr1_4:13490811-13490830 None:intergenic 30.0%
! TCTGTTTTGTGAAAAGATAC+CGG - chr1_4:13490900-13490919 None:intergenic 30.0%
TTTCACAAAACAGATTGTCA+TGG + chr1_4:13490906-13490925 Msa0151380:intron 30.0%
!! ATTACTTTTGGACAACCTTT+TGG + chr1_4:13490948-13490967 Msa0151380:CDS 30.0%
ATGTCGAAGTATGAGTAAAA+GGG - chr1_4:13490987-13491006 None:intergenic 30.0%
AATGTCGAAGTATGAGTAAA+AGG - chr1_4:13490988-13491007 None:intergenic 30.0%
! GAAGTCTTTTTCTTTTGACA+AGG + chr1_4:13491129-13491148 Msa0151380:intron 30.0%
CTTATTTGAGCTTATTTACC+TGG + chr1_4:13491222-13491241 Msa0151380:intron 30.0%
! ATGATATGCTTTTATGATGC+AGG + chr1_4:13491415-13491434 Msa0151380:intron 30.0%
!!! CTTTGTGAATTTTTTGACAC+CGG + chr1_4:13491574-13491593 Msa0151380:CDS 30.0%
ATTGCTATATAGAATGTCAC+TGG + chr1_4:13491781-13491800 Msa0151380:CDS 30.0%
! AAAAGGCATATGCTTAAGAA+GGG - chr1_4:13491816-13491835 None:intergenic 30.0%
! TAAAAGGCATATGCTTAAGA+AGG - chr1_4:13491817-13491836 None:intergenic 30.0%
! TCTTAAGCATATGCCTTTTA+TGG + chr1_4:13491817-13491836 Msa0151380:CDS 30.0%
!!! TTTTGAAGCGTAACTCATTT+TGG - chr1_4:13491941-13491960 None:intergenic 30.0%
AAAATGAGTTACGCTTCAAA+AGG + chr1_4:13491940-13491959 Msa0151380:intron 30.0%
! GCTTCAAAAGGAACAAATTT+TGG + chr1_4:13491952-13491971 Msa0151380:intron 30.0%
! TATCTGATTTTCTAACCACT+CGG - chr1_4:13492049-13492068 None:intergenic 30.0%
ACATATGACTCACTTTCTTA+TGG - chr1_4:13492072-13492091 None:intergenic 30.0%
GCACATATGATGAATAGTTA+TGG - chr1_4:13492157-13492176 None:intergenic 30.0%
! CTCGTTTAAAACCTAAAGTA+TGG - chr1_4:13492351-13492370 None:intergenic 30.0%
!!! CATACTTTAGGTTTTAAACG+AGG + chr1_4:13492349-13492368 Msa0151380:intron 30.0%
CTTTATTCATTCTCTCTTGT+TGG - chr1_4:13492394-13492413 None:intergenic 30.0%
CAACAAGAGAGAATGAATAA+AGG + chr1_4:13492392-13492411 Msa0151380:CDS 30.0%
! TGAATAAAGGTGCAAATGTA+TGG + chr1_4:13492405-13492424 Msa0151380:CDS 30.0%
ATGCTTCTTAAGATCCAATA+AGG + chr1_4:13492567-13492586 Msa0151380:three_prime_UTR 30.0%
ACACTGTACACAAATTTAAG+AGG - chr1_4:13492751-13492770 None:intergenic 30.0%
AAGATGGTGAAACCATAAAT+TGG - chr1_4:13492779-13492798 None:intergenic 30.0%
CTATGAAAGTGATGAGAAGA+AGG - chr1_4:13487898-13487917 None:intergenic 35.0%
AGAAGAAGAAGAAGAAAGAG+AGG - chr1_4:13488001-13488020 None:intergenic 35.0%
GTGAGTGGTTTAATAATAGG+TGG + chr1_4:13488326-13488345 Msa0151380:intron 35.0%
! TGGCTCAATTGATCTAAGAT+AGG + chr1_4:13488346-13488365 Msa0151380:intron 35.0%
TGAACATAACTCGACAAAGT+TGG + chr1_4:13488396-13488415 Msa0151380:intron 35.0%
! TGACAACTTGTCATCCATTT+TGG - chr1_4:13488582-13488601 None:intergenic 35.0%
AACACTTCGTACAAAACTGT+AGG - chr1_4:13488770-13488789 None:intergenic 35.0%
AAGAAAGTTTCTCCTGTGTA+GGG + chr1_4:13488866-13488885 Msa0151380:intron 35.0%
GGTCCATATATGAAAGAGTA+TGG + chr1_4:13488901-13488920 Msa0151380:intron 35.0%
!!! GCTTATACTTTTTTGGGTTG+TGG + chr1_4:13488938-13488957 Msa0151380:intron 35.0%
!!! TTTTTGGGTTGTGGATTTTC+AGG + chr1_4:13488947-13488966 Msa0151380:intron 35.0%
!!! TTTTGGGTTGTGGATTTTCA+GGG + chr1_4:13488948-13488967 Msa0151380:intron 35.0%
CAGGGTTTGAAAGGTAAATT+TGG + chr1_4:13488966-13488985 Msa0151380:intron 35.0%
GTTGGATCAAATTAGAGACT+TGG + chr1_4:13489274-13489293 Msa0151380:intron 35.0%
AATAAGCTGAAAGCAGCTTA+TGG - chr1_4:13489424-13489443 None:intergenic 35.0%
AAGCTATCCTAGAGAGTTTA+TGG - chr1_4:13489448-13489467 None:intergenic 35.0%
AAGCTGTTTATCCAAACAAG+TGG + chr1_4:13489570-13489589 Msa0151380:intron 35.0%
AGCTGTTTATCCAAACAAGT+GGG + chr1_4:13489571-13489590 Msa0151380:intron 35.0%
CAAACTTTATCCCACTTGTT+TGG - chr1_4:13489584-13489603 None:intergenic 35.0%
CAAACAAGTGGGATAAAGTT+TGG + chr1_4:13489582-13489601 Msa0151380:intron 35.0%
GGATGCTTTATAGCACATAT+AGG - chr1_4:13489624-13489643 None:intergenic 35.0%
! ATACGAATTTGAAGCTTTGG+TGG - chr1_4:13489826-13489845 None:intergenic 35.0%
TTTGGATAAACTCGCTTACA+TGG + chr1_4:13489917-13489936 Msa0151380:CDS 35.0%
TGGAAGAATTGGTAAATGAC+AGG + chr1_4:13489937-13489956 Msa0151380:CDS 35.0%
CTGTACATACTGAAAGAAGA+AGG + chr1_4:13490027-13490046 Msa0151380:CDS 35.0%
TGACTTAAAGGATGATTCCA+TGG + chr1_4:13490139-13490158 Msa0151380:CDS 35.0%
GTTCCTCAAAACATTCCATT+GGG - chr1_4:13490315-13490334 None:intergenic 35.0%
! GTTATCTTTAGGGGTAAAGA+TGG + chr1_4:13490340-13490359 Msa0151380:CDS 35.0%
!! CATGTATTTTGAACACATCC+AGG - chr1_4:13490370-13490389 None:intergenic 35.0%
ATTTACAGAGCCAAGATGAA+GGG - chr1_4:13490410-13490429 None:intergenic 35.0%
TAGTAGTGAGTTACATGACA+TGG + chr1_4:13490521-13490540 Msa0151380:intron 35.0%
TTTCCTAATGGTTGGATATC+AGG + chr1_4:13490579-13490598 Msa0151380:intron 35.0%
ACATTTAGCATTCGAGTAGA+TGG - chr1_4:13490642-13490661 None:intergenic 35.0%
ATCCCTTCTTTCTCAAAACA+TGG - chr1_4:13490681-13490700 None:intergenic 35.0%
ACTTATTAAATACCTCGGCA+TGG - chr1_4:13490779-13490798 None:intergenic 35.0%
AAAAGTCATGGTTTCTTACC+CGG + chr1_4:13490878-13490897 Msa0151380:intron 35.0%
! CTGTTTTGTGAAAAGATACC+GGG - chr1_4:13490899-13490918 None:intergenic 35.0%
AAAAGTAATCCGTGTTCAAC+CGG - chr1_4:13490937-13490956 None:intergenic 35.0%
TGTCGAAGTATGAGTAAAAG+GGG - chr1_4:13490986-13491005 None:intergenic 35.0%
! TCATACTTCGACATTTGCTA+AGG + chr1_4:13490993-13491012 Msa0151380:CDS 35.0%
! CATACTTCGACATTTGCTAA+GGG + chr1_4:13490994-13491013 Msa0151380:CDS 35.0%
GGTATAAACGAAACAAACCT+AGG - chr1_4:13491030-13491049 None:intergenic 35.0%
TTATTTCCATGAGTTCTCCA+AGG + chr1_4:13491318-13491337 Msa0151380:intron 35.0%
ATTTACATAAGCTGCTACCT+TGG - chr1_4:13491338-13491357 None:intergenic 35.0%
GCGCAAATCAGAAATATCTA+AGG - chr1_4:13491461-13491480 None:intergenic 35.0%
AACTCCATATCAATCGGATA+GGG - chr1_4:13491626-13491645 None:intergenic 35.0%
AAACTCCATATCAATCGGAT+AGG - chr1_4:13491627-13491646 None:intergenic 35.0%
!! ATGGTTGATAGAACCATACA+AGG - chr1_4:13491656-13491675 None:intergenic 35.0%
! TGTATGGTTCTATCAACCAT+TGG + chr1_4:13491656-13491675 Msa0151380:CDS 35.0%
! GTATGGTTCTATCAACCATT+GGG + chr1_4:13491657-13491676 Msa0151380:CDS 35.0%
! AAAGGCATATGCTTAAGAAG+GGG - chr1_4:13491815-13491834 None:intergenic 35.0%
! TGCCTTTTATGGAACATCTA+TGG + chr1_4:13491828-13491847 Msa0151380:CDS 35.0%
CTCCATAGATGTTCCATAAA+AGG - chr1_4:13491833-13491852 None:intergenic 35.0%
! CTTTTATGGAACATCTATGG+AGG + chr1_4:13491831-13491850 Msa0151380:CDS 35.0%
CAATTGATTGTGTTTGAGCA+AGG + chr1_4:13491904-13491923 Msa0151380:intron 35.0%
GTGTTTGAGCAAGGAATAAA+AGG + chr1_4:13491913-13491932 Msa0151380:intron 35.0%
!!! AGGTTTTAAACGAGGATCTA+CGG + chr1_4:13492357-13492376 Msa0151380:intron 35.0%
AACCTTGCATTAGAACTTCA+TGG + chr1_4:13492621-13492640 Msa0151380:three_prime_UTR 35.0%
TCATATCAACACAACATTCC+CGG - chr1_4:13492672-13492691 None:intergenic 35.0%
TGTTCCTTTGTAGAATGACA+AGG + chr1_4:13492695-13492714 Msa0151380:three_prime_UTR 35.0%
ACAACCTTGTCATTCTACAA+AGG - chr1_4:13492702-13492721 None:intergenic 35.0%
TATGGTTTCACCATCTTAGA+TGG + chr1_4:13492782-13492801 Msa0151380:three_prime_UTR 35.0%
CATACAACAATCCCCTTTAA+GGG - chr1_4:13492824-13492843 None:intergenic 35.0%
TCATACAACAATCCCCTTTA+AGG - chr1_4:13492825-13492844 None:intergenic 35.0%
GTTGATTAAGAATTCCTGAC+TGG + chr1_4:13492862-13492881 Msa0151380:three_prime_UTR 35.0%
TAAAGCAGAAGCAGTAGCTA+TGG - chr1_4:13487930-13487949 None:intergenic 40.0%
TTCCAAGCTTGACACCAAAA+GGG + chr1_4:13487973-13487992 Msa0151380:CDS 40.0%
!!! AAGAAAGAGAGGTACCCTTT+TGG - chr1_4:13487990-13488009 None:intergenic 40.0%
!!! GTCACAGGTTTTGAGATTGA+GGG - chr1_4:13488302-13488321 None:intergenic 40.0%
!!! AGTCACAGGTTTTGAGATTG+AGG - chr1_4:13488303-13488322 None:intergenic 40.0%
CAATCTCAAAACCTGTGACT+CGG + chr1_4:13488303-13488322 Msa0151380:intron 40.0%
AATCTCAAAACCTGTGACTC+GGG + chr1_4:13488304-13488323 Msa0151380:intron 40.0%
CGGGTGAGTGGTTTAATAAT+AGG + chr1_4:13488323-13488342 Msa0151380:intron 40.0%
ACATAACTCGACAAAGTTGG+AGG + chr1_4:13488399-13488418 Msa0151380:intron 40.0%
ACCCTAATTTGAGCATGCAA+CGG - chr1_4:13488620-13488639 None:intergenic 40.0%
GAAGAAAGTTTCTCCTGTGT+AGG + chr1_4:13488865-13488884 Msa0151380:intron 40.0%
!! GTGGATTTTCAGGGTTTGAA+AGG + chr1_4:13488957-13488976 Msa0151380:intron 40.0%
!! TTTGGAGTGTTTGCTGTGTT+TGG + chr1_4:13488984-13489003 Msa0151380:CDS 40.0%
! TCTAAAGCGCCACTAAGTAA+AGG + chr1_4:13489062-13489081 Msa0151380:CDS 40.0%
TTCAAGCCATAGAAGTAGCT+AGG + chr1_4:13489102-13489121 Msa0151380:CDS 40.0%
ATCATGCCTAGCTACTTCTA+TGG - chr1_4:13489111-13489130 None:intergenic 40.0%
! TAGCTGAAACCTTTTCATGG+AGG - chr1_4:13489184-13489203 None:intergenic 40.0%
GTCTCTAATTTGATCCAACG+AGG - chr1_4:13489273-13489292 None:intergenic 40.0%
TAAGCCCTTGTGAGACTATT+TGG + chr1_4:13489368-13489387 Msa0151380:intron 40.0%
AAGCCCTTGTGAGACTATTT+GGG + chr1_4:13489369-13489388 Msa0151380:intron 40.0%
TCTCCCAAATAGTCTCACAA+GGG - chr1_4:13489375-13489394 None:intergenic 40.0%
TCAGAAACTATTGGTGTAGG+TGG + chr1_4:13489666-13489685 Msa0151380:intron 40.0%
ACCATGAAAAAGGATCTAGC+TGG + chr1_4:13489733-13489752 Msa0151380:CDS 40.0%
CCATGAAAAAGGATCTAGCT+GGG + chr1_4:13489734-13489753 Msa0151380:CDS 40.0%
AGCAAGAGTTTCTACTGCTT+TGG + chr1_4:13489899-13489918 Msa0151380:CDS 40.0%
ACTCGCTTACATGGAAGAAT+TGG + chr1_4:13489926-13489945 Msa0151380:CDS 40.0%
!! ATCAGAAGTACTTGGAGAAG+AGG - chr1_4:13490003-13490022 None:intergenic 40.0%
TTAGGATGGTATGACTGAAC+TGG - chr1_4:13490083-13490102 None:intergenic 40.0%
!! TGCTTTCTCTGCTGACTTAA+AGG + chr1_4:13490127-13490146 Msa0151380:CDS 40.0%
GGATTGATATCGACATACCA+TGG - chr1_4:13490159-13490178 None:intergenic 40.0%
! TTCCATTGGGATCTGGAATA+GGG - chr1_4:13490302-13490321 None:intergenic 40.0%
! ATTCCATTGGGATCTGGAAT+AGG - chr1_4:13490303-13490322 None:intergenic 40.0%
CAAAACATTCCATTGGGATC+TGG - chr1_4:13490309-13490328 None:intergenic 40.0%
! GATCCCAATGGAATGTTTTG+AGG + chr1_4:13490309-13490328 Msa0151380:intron 40.0%
GGTTCCTCAAAACATTCCAT+TGG - chr1_4:13490316-13490335 None:intergenic 40.0%
!!! TGGAATGTTTTGAGGAACCA+TGG + chr1_4:13490317-13490336 Msa0151380:CDS 40.0%
!!! GGAATGTTTTGAGGAACCAT+GGG + chr1_4:13490318-13490337 Msa0151380:CDS 40.0%
! AGGAACCATGGGTTATCTTT+AGG + chr1_4:13490329-13490348 Msa0151380:CDS 40.0%
! GGAACCATGGGTTATCTTTA+GGG + chr1_4:13490330-13490349 Msa0151380:CDS 40.0%
! GAACCATGGGTTATCTTTAG+GGG + chr1_4:13490331-13490350 Msa0151380:CDS 40.0%
TTACCCCTAAAGATAACCCA+TGG - chr1_4:13490337-13490356 None:intergenic 40.0%
TTTACAGAGCCAAGATGAAG+GGG - chr1_4:13490409-13490428 None:intergenic 40.0%
CATTTACAGAGCCAAGATGA+AGG - chr1_4:13490411-13490430 None:intergenic 40.0%
!! TCATCTTGGCTCTGTAAATG+AGG + chr1_4:13490411-13490430 Msa0151380:CDS 40.0%
!! CATCTTGGCTCTGTAAATGA+GGG + chr1_4:13490412-13490431 Msa0151380:CDS 40.0%
GATGAATACTAACCGTGGTA+GGG - chr1_4:13490451-13490470 None:intergenic 40.0%
CTACCACGGTTAGTATTCAT+CGG + chr1_4:13490450-13490469 Msa0151380:intron 40.0%
TAATGGTTGGATATCAGGCT+GGG + chr1_4:13490584-13490603 Msa0151380:intron 40.0%
TTGAGAAAGAAGGGATGATC+TGG + chr1_4:13490685-13490704 Msa0151380:CDS 40.0%
AAGAAGGGATGATCTGGATT+TGG + chr1_4:13490691-13490710 Msa0151380:CDS 40.0%
TGGACTATAAATCCAGAAGG+AGG - chr1_4:13490759-13490778 None:intergenic 40.0%
! GCATGGACTATAAATCCAGA+AGG - chr1_4:13490762-13490781 None:intergenic 40.0%
ACAGATTGTCATGGAACTTC+CGG + chr1_4:13490915-13490934 Msa0151380:intron 40.0%
!! GGTTGAACACGGATTACTTT+TGG + chr1_4:13490936-13490955 Msa0151380:CDS 40.0%
!!! AATTTTTTGACACCGGCATC+TGG + chr1_4:13491581-13491600 Msa0151380:CDS 40.0%
ATCTGGTCTGCAAGGATATT+GGG + chr1_4:13491598-13491617 Msa0151380:CDS 40.0%
GGTCGAAACTCCATATCAAT+CGG - chr1_4:13491632-13491651 None:intergenic 40.0%
! GTTGATAGAACCATACAAGG+TGG - chr1_4:13491653-13491672 None:intergenic 40.0%
CTTTGTCCTTTCAATTTCCC+GGG - chr1_4:13491692-13491711 None:intergenic 40.0%
GCTTTGTCCTTTCAATTTCC+CGG - chr1_4:13491693-13491712 None:intergenic 40.0%
CAGGTGTGTTGAACATTCTT+TGG - chr1_4:13491717-13491736 None:intergenic 40.0%
GTGAGTCATATGTGCCTAAT+TGG + chr1_4:13492079-13492098 Msa0151380:intron 40.0%
TCTCCATCGAAGAACCAATT+AGG - chr1_4:13492096-13492115 None:intergenic 40.0%
ACAAGCTTGGAGTAAGGTAT+AGG + chr1_4:13492449-13492468 Msa0151380:exon 40.0%
TTGGAGTAAGGTATAGGCTT+TGG + chr1_4:13492455-13492474 Msa0151380:exon 40.0%
!! AGTAAGGTATAGGCTTTGGA+GGG + chr1_4:13492459-13492478 Msa0151380:exon 40.0%
! AGCCATGAAGTTCTAATGCA+AGG - chr1_4:13492626-13492645 None:intergenic 40.0%
CATATCAACACAACATTCCC+GGG - chr1_4:13492671-13492690 None:intergenic 40.0%
AATGACAAGGTTGTACTCTG+AGG + chr1_4:13492708-13492727 Msa0151380:three_prime_UTR 40.0%
TATACCACCACCATCTAAGA+TGG - chr1_4:13492795-13492814 None:intergenic 40.0%
TGGTATAACCACACCCTTAA+AGG + chr1_4:13492808-13492827 Msa0151380:three_prime_UTR 40.0%
GGTATAACCACACCCTTAAA+GGG + chr1_4:13492809-13492828 Msa0151380:three_prime_UTR 40.0%
GTATAACCACACCCTTAAAG+GGG + chr1_4:13492810-13492829 Msa0151380:three_prime_UTR 40.0%
GATTGTAACTCAAACCAGTC+AGG - chr1_4:13492879-13492898 None:intergenic 40.0%
AGCAGTAGCTATGGCATTCA+TGG - chr1_4:13487921-13487940 None:intergenic 45.0%
CTTCCAAGCTTGACACCAAA+AGG + chr1_4:13487972-13487991 Msa0151380:CDS 45.0%
!!! TACCCTTTTGGTGTCAAGCT+TGG - chr1_4:13487978-13487997 None:intergenic 45.0%
!! TCATCCATTTTGGTCCCACA+AGG - chr1_4:13488572-13488591 None:intergenic 45.0%
TGCAACGGCGTTAAAACTCT+TGG - chr1_4:13488605-13488624 None:intergenic 45.0%
GCCGTTGCATGCTCAAATTA+GGG + chr1_4:13488616-13488635 Msa0151380:intron 45.0%
TGTGTAGGGTCTACATCTTC+CGG + chr1_4:13488880-13488899 Msa0151380:intron 45.0%
! AAGCAGACAAGAAAAGTGCG+TGG + chr1_4:13489009-13489028 Msa0151380:CDS 45.0%
! AGCAGACAAGAAAAGTGCGT+GGG + chr1_4:13489010-13489029 Msa0151380:CDS 45.0%
GGGTGCGATATTTGATGTAC+AGG + chr1_4:13489031-13489050 Msa0151380:CDS 45.0%
! CTTAGTGGCGCTTTAGATCT+TGG - chr1_4:13489059-13489078 None:intergenic 45.0%
AGTACTTAGATTGGCGAGCT+CGG + chr1_4:13489135-13489154 Msa0151380:CDS 45.0%
!! CTTTTCATGGAGGAGCATGA+TGG - chr1_4:13489174-13489193 None:intergenic 45.0%
CATCATGCTCCTCCATGAAA+AGG + chr1_4:13489172-13489191 Msa0151380:CDS 45.0%
CTCTCCCAAATAGTCTCACA+AGG - chr1_4:13489376-13489395 None:intergenic 45.0%
GACTTGAATTCACGAGCTAG+AGG - chr1_4:13489706-13489725 None:intergenic 45.0%
GCTCGTGAATTCAAGTCGAT+TGG + chr1_4:13489709-13489728 Msa0151380:CDS 45.0%
GTCGATTGGCACCATGAAAA+AGG + chr1_4:13489723-13489742 Msa0151380:CDS 45.0%
!! CCCAGCTAGATCCTTTTTCA+TGG - chr1_4:13489737-13489756 None:intergenic 45.0%
! ATTAGCAGAAGCACACAGAC+AGG + chr1_4:13489768-13489787 Msa0151380:CDS 45.0%
AAGTCAGCAGAGAAAGCAAC+AGG - chr1_4:13490125-13490144 None:intergenic 45.0%
! ATTGGGATCTGGAATAGGGA+AGG - chr1_4:13490298-13490317 None:intergenic 45.0%
TTCCCTATTCCAGATCCCAA+TGG + chr1_4:13490297-13490316 Msa0151380:intron 45.0%
CGATGAATACTAACCGTGGT+AGG - chr1_4:13490452-13490471 None:intergenic 45.0%
GTTCCGATGAATACTAACCG+TGG - chr1_4:13490456-13490475 None:intergenic 45.0%
CAGCCTGATATCCAACCATT+AGG - chr1_4:13490585-13490604 None:intergenic 45.0%
CTAATGGTTGGATATCAGGC+TGG + chr1_4:13490583-13490602 Msa0151380:intron 45.0%
AAGAAGGAAGTGATGCTGCT+GGG - chr1_4:13490731-13490750 None:intergenic 45.0%
AAAGAAGGAAGTGATGCTGC+TGG - chr1_4:13490732-13490751 None:intergenic 45.0%
CCAGAAGGAGGTAGTAAAGA+AGG - chr1_4:13490747-13490766 None:intergenic 45.0%
CCTTCTTTACTACCTCCTTC+TGG + chr1_4:13490744-13490763 Msa0151380:CDS 45.0%
TGGATTTATAGTCCATGCCG+AGG + chr1_4:13490764-13490783 Msa0151380:CDS 45.0%
ATGGAACTTCCGGTTGAACA+CGG + chr1_4:13490925-13490944 Msa0151380:CDS 45.0%
! CTTCGACATTTGCTAAGGGA+TGG + chr1_4:13490998-13491017 Msa0151380:CDS 45.0%
TTACCTGGCATAAGCACTTG+TGG + chr1_4:13491237-13491256 Msa0151380:intron 45.0%
TACCTGGCATAAGCACTTGT+GGG + chr1_4:13491238-13491257 Msa0151380:intron 45.0%
TAAGCACTTGTGGGACTGTT+TGG + chr1_4:13491247-13491266 Msa0151380:intron 45.0%
CATCTGGTCTGCAAGGATAT+TGG + chr1_4:13491597-13491616 Msa0151380:CDS 45.0%
GGATCCCTATCCGATTGATA+TGG + chr1_4:13491619-13491638 Msa0151380:CDS 45.0%
AGGGTAAGCAGACATGTAGT+TGG - chr1_4:13491742-13491761 None:intergenic 45.0%
!!! ATGGAGGCATTTTGCAGAAC+AGG + chr1_4:13491847-13491866 Msa0151380:CDS 45.0%
TAACCACTCGGACAAATCAC+AGG - chr1_4:13492037-13492056 None:intergenic 45.0%
! GTGCCTAATTGGTTCTTCGA+TGG + chr1_4:13492090-13492109 Msa0151380:intron 45.0%
CCAAGCTTGTCATAGGTAAC+TGG - chr1_4:13492439-13492458 None:intergenic 45.0%
CCAGTTACCTATGACAAGCT+TGG + chr1_4:13492436-13492455 Msa0151380:CDS 45.0%
CCTTACTCCAAGCTTGTCAT+AGG - chr1_4:13492446-13492465 None:intergenic 45.0%
CCTATGACAAGCTTGGAGTA+AGG + chr1_4:13492443-13492462 Msa0151380:CDS 45.0%
! GAGTAAGGTATAGGCTTTGG+AGG + chr1_4:13492458-13492477 Msa0151380:exon 45.0%
TTGGAGGGATGCATTGGAAA+AGG + chr1_4:13492474-13492493 Msa0151380:three_prime_UTR 45.0%
TGGAGGGATGCATTGGAAAA+GGG + chr1_4:13492475-13492494 Msa0151380:three_prime_UTR 45.0%
ATCAACCTAGTGAAGCTACC+CGG + chr1_4:13492650-13492669 Msa0151380:three_prime_UTR 45.0%
GGTTTCACCATCTTAGATGG+TGG + chr1_4:13492785-13492804 Msa0151380:three_prime_UTR 45.0%
! TTCACCATCTTAGATGGTGG+TGG + chr1_4:13492788-13492807 Msa0151380:three_prime_UTR 45.0%
! AACAATCCCCTTTAAGGGTG+TGG - chr1_4:13492819-13492838 None:intergenic 45.0%
!!! ATCATTTTTTTTAAATAAAA+AGG - chr1_4:13490180-13490199 None:intergenic 5.0%
ACTCGACAAAGTTGGAGGTG+TGG + chr1_4:13488404-13488423 Msa0151380:intron 50.0%
CGCCGTTGCATGCTCAAATT+AGG + chr1_4:13488615-13488634 Msa0151380:intron 50.0%
GGAAGATGTAGACCCTACAC+AGG - chr1_4:13488881-13488900 None:intergenic 50.0%
! GCAGACAAGAAAAGTGCGTG+GGG + chr1_4:13489011-13489030 Msa0151380:CDS 50.0%
AAAGGATCTAGCTGGGTTGC+AGG + chr1_4:13489741-13489760 Msa0151380:CDS 50.0%
ACTTGGAGAAGAGGACGTCT+CGG - chr1_4:13489994-13490013 None:intergenic 50.0%
AGGGGTAAAGATGGCAAACC+TGG + chr1_4:13490349-13490368 Msa0151380:CDS 50.0%
AGAGCATGTCCCCTTCATCT+TGG + chr1_4:13490397-13490416 Msa0151380:CDS 50.0%
GGCTGGGAATATACGACAGA+CGG + chr1_4:13490600-13490619 Msa0151380:intron 50.0%
AGAAGGAAGTGATGCTGCTG+GGG - chr1_4:13490730-13490749 None:intergenic 50.0%
! CTAAGGGATGGAGTGTTCCT+AGG + chr1_4:13491010-13491029 Msa0151380:CDS 50.0%
CTGCTACCTTGGAGAACTCA+TGG - chr1_4:13491327-13491346 None:intergenic 50.0%
TATCCTTGCAGACCAGATGC+CGG - chr1_4:13491596-13491615 None:intergenic 50.0%
GGAGTTTCGACCACCTTGTA+TGG + chr1_4:13491640-13491659 Msa0151380:CDS 50.0%
ACCATTGGGATTTCGAAGCC+CGG + chr1_4:13491671-13491690 Msa0151380:CDS 50.0%
TCGAAGCCCGGGAAATTGAA+AGG + chr1_4:13491683-13491702 Msa0151380:CDS 50.0%
! AGCAGACATGTAGTTGGTGC+AGG - chr1_4:13491736-13491755 None:intergenic 50.0%
CACTCGGACAAATCACAGGT+TGG - chr1_4:13492033-13492052 None:intergenic 50.0%
! CAACCTGTGATTTGTCCGAG+TGG + chr1_4:13492031-13492050 Msa0151380:intron 50.0%
GAGGATCTACGGCTAGTAGT+TGG + chr1_4:13492368-13492387 Msa0151380:CDS 50.0%
!! TAGGCTTTGGAGGGATGCAT+TGG + chr1_4:13492468-13492487 Msa0151380:three_prime_UTR 50.0%
TCAACCTAGTGAAGCTACCC+GGG + chr1_4:13492651-13492670 Msa0151380:three_prime_UTR 50.0%
! AAACCTGTGACTCGGGTGAG+TGG + chr1_4:13488311-13488330 Msa0151380:intron 55.0%
AAACCACTCACCCGAGTCAC+AGG - chr1_4:13488317-13488336 None:intergenic 55.0%
GATTACGCAGTTGCGTGCGA+AGG - chr1_4:13488542-13488561 None:intergenic 55.0%
! CGTAATCCCTCGAGCCTTGT+GGG + chr1_4:13488555-13488574 Msa0151380:intron 55.0%
TTTGGTCCCACAAGGCTCGA+GGG - chr1_4:13488564-13488583 None:intergenic 55.0%
! TTTTGGTCCCACAAGGCTCG+AGG - chr1_4:13488565-13488584 None:intergenic 55.0%
! CGAGCCTTGTGGGACCAAAA+TGG + chr1_4:13488565-13488584 Msa0151380:intron 55.0%
CAGACATGCATGCACCTCGT+TGG + chr1_4:13489256-13489275 Msa0151380:intron 55.0%
CGTATCGCATGTCCCTACCA+CGG + chr1_4:13490436-13490455 Msa0151380:CDS 55.0%
GGGATGATCTGGATTTGGCC+TGG + chr1_4:13490696-13490715 Msa0151380:CDS 55.0%
GAAGGAAGTGATGCTGCTGG+GGG - chr1_4:13490729-13490748 None:intergenic 55.0%
GTCCCACAAGTGCTTATGCC+AGG - chr1_4:13491243-13491262 None:intergenic 55.0%
CCATTGGGATTTCGAAGCCC+GGG + chr1_4:13491672-13491691 Msa0151380:CDS 55.0%
CATTCCCGGGTAGCTTCACT+AGG - chr1_4:13492658-13492677 None:intergenic 55.0%
GCGTAATCCCTCGAGCCTTG+TGG + chr1_4:13488554-13488573 Msa0151380:intron 60.0%
GGGCGTGCGCAAGATCCAAA+AGG - chr1_4:13490966-13490985 None:intergenic 60.0%
ACACCGGCATCTGGTCTGCA+AGG + chr1_4:13491590-13491609 Msa0151380:CDS 60.0%
CCCGGGCTTCGAAATCCCAA+TGG - chr1_4:13491675-13491694 None:intergenic 60.0%
GCTGCTGGGGGATCACTGCC+AGG - chr1_4:13490717-13490736 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 13487838 13492922 13487838 ID=Msa0151380;Name=Msa0151380
chr1_4 mRNA 13487838 13492922 13487838 ID=Msa0151380-mRNA-1;Parent=Msa0151380;Name=Msa0151380-mRNA-1;_AED=0.09;_eAED=0.09;_QI=82|1|1|1|1|1|9|459|508
chr1_4 exon 13487838 13487994 13487838 ID=Msa0151380-mRNA-1:exon:5372;Parent=Msa0151380-mRNA-1
chr1_4 exon 13488969 13489193 13488969 ID=Msa0151380-mRNA-1:exon:5373;Parent=Msa0151380-mRNA-1
chr1_4 exon 13489685 13489789 13489685 ID=Msa0151380-mRNA-1:exon:5374;Parent=Msa0151380-mRNA-1
chr1_4 exon 13489885 13490160 13489885 ID=Msa0151380-mRNA-1:exon:5375;Parent=Msa0151380-mRNA-1
chr1_4 exon 13490310 13490457 13490310 ID=Msa0151380-mRNA-1:exon:5376;Parent=Msa0151380-mRNA-1
chr1_4 exon 13490601 13490785 13490601 ID=Msa0151380-mRNA-1:exon:5377;Parent=Msa0151380-mRNA-1
chr1_4 exon 13490919 13491031 13490919 ID=Msa0151380-mRNA-1:exon:5378;Parent=Msa0151380-mRNA-1
chr1_4 exon 13491574 13491868 13491574 ID=Msa0151380-mRNA-1:exon:5379;Parent=Msa0151380-mRNA-1
chr1_4 exon 13492359 13492922 13492359 ID=Msa0151380-mRNA-1:exon:5380;Parent=Msa0151380-mRNA-1
chr1_4 five_prime_UTR 13487838 13487919 13487838 ID=Msa0151380-mRNA-1:five_prime_utr;Parent=Msa0151380-mRNA-1
chr1_4 CDS 13487920 13487994 13487920 ID=Msa0151380-mRNA-1:cds;Parent=Msa0151380-mRNA-1
chr1_4 CDS 13488969 13489193 13488969 ID=Msa0151380-mRNA-1:cds;Parent=Msa0151380-mRNA-1
chr1_4 CDS 13489685 13489789 13489685 ID=Msa0151380-mRNA-1:cds;Parent=Msa0151380-mRNA-1
chr1_4 CDS 13489885 13490160 13489885 ID=Msa0151380-mRNA-1:cds;Parent=Msa0151380-mRNA-1
chr1_4 CDS 13490310 13490457 13490310 ID=Msa0151380-mRNA-1:cds;Parent=Msa0151380-mRNA-1
chr1_4 CDS 13490601 13490785 13490601 ID=Msa0151380-mRNA-1:cds;Parent=Msa0151380-mRNA-1
chr1_4 CDS 13490919 13491031 13490919 ID=Msa0151380-mRNA-1:cds;Parent=Msa0151380-mRNA-1
chr1_4 CDS 13491574 13491868 13491574 ID=Msa0151380-mRNA-1:cds;Parent=Msa0151380-mRNA-1
chr1_4 CDS 13492359 13492463 13492359 ID=Msa0151380-mRNA-1:cds;Parent=Msa0151380-mRNA-1
chr1_4 three_prime_UTR 13492464 13492922 13492464 ID=Msa0151380-mRNA-1:three_prime_utr;Parent=Msa0151380-mRNA-1
Gene Sequence

>Msa0151380

ATGAATGCCATAGCTACTGCTTCTGCTTTATCTCTTCCTATCTTTTGTAGAACTTCCAAGCTTGACACCAAAAGGGGTTTGAAAGGTAAATTTGGAGTGTTTGCTGTGTTTGGAGAAGCAGACAAGAAAAGTGCGTGGGGTGCGATATTTGATGTACAGGATCCAAGATCTAAAGCGCCACTAAGTAAAGGAAAAGTTTTGGATGTATTTCAAGCCATAGAAGTAGCTAGGCATGATATTGAGTACTTAGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTCCTCCATGAAAAGGTGGTTGAAGTTCTTAATCCTCTAGCTCGTGAATTCAAGTCGATTGGCACCATGAAAAAGGATCTAGCTGGGTTGCAGGACGAATTAGCAGAAGCACACAGACAGGTCCATATATCTGAAGCAAGAGTTTCTACTGCTTTGGATAAACTCGCTTACATGGAAGAATTGGTAAATGACAGGCTATTGCAAGACAGAAGCACAGCTGAAGTTGCCGAGACGTCCTCTTCTCCAAGTACTTCTGATAAATCTGTACATACTGAAAGAAGAAGGAAGCCGAAGAAAAGCTTAAATGTATCAGGTCCAGTTCAGTCATACCATCCTAATTTAAAGAATTTCTGGTATCCTGTTGCTTTCTCTGCTGACTTAAAGGATGATTCCATGATCCCAATGGAATGTTTTGAGGAACCATGGGTTATCTTTAGGGGTAAAGATGGCAAACCTGGATGTGTTCAAAATACATGTGCACACAGAGCATGTCCCCTTCATCTTGGCTCTGTAAATGAGGGTCGTATCGCATGTCCCTACCACGGCTGGGAATATACGACAGACGGAAAATGCGAGAAAATGCCATCTACTCGAATGCTAAATGTAAAGATAAAGTCAATTCCATGTTTTGAGAAAGAAGGGATGATCTGGATTTGGCCTGGCAGTGATCCCCCAGCAGCATCACTTCCTTCTTTACTACCTCCTTCTGGATTTATAGTCCATGCCGAGATTGTCATGGAACTTCCGGTTGAACACGGATTACTTTTGGACAACCTTTTGGATCTTGCGCACGCCCCTTTTACTCATACTTCGACATTTGCTAAGGGATGGAGTGTTCCTAGCTTTGTGAATTTTTTGACACCGGCATCTGGTCTGCAAGGATATTGGGATCCCTATCCGATTGATATGGAGTTTCGACCACCTTGTATGGTTCTATCAACCATTGGGATTTCGAAGCCCGGGAAATTGAAAGGACAAAGCACCAAAGAATGTTCAACACACCTGCACCAACTACATGTCTGCTTACCCTCTTCAAAAGATAAAACAAGATTGCTATATAGAATGTCACTGGATTTCGCTCCCCTTCTTAAGCATATGCCTTTTATGGAACATCTATGGAGGCATTTTGCAGAACAGGTTTTAAACGAGGATCTACGGCTAGTAGTTGGCCAACAAGAGAGAATGAATAAAGGTGCAAATGTATGGAATGTGTACCAGTTACCTATGACAAGCTTGGAGTAA
Protein sequence

>Msa0151380

MNAIATASALSLPIFCRTSKLDTKRGLKGKFGVFAVFGEADKKSAWGAIFDVQDPRSKAPLSKGKVLDVFQAIEVARHDIEYLDWRARQDVLTIMLLHEKVVEVLNPLAREFKSIGTMKKDLAGLQDELAEAHRQVHISEARVSTALDKLAYMEELVNDRLLQDRSTAEVAETSSSPSTSDKSVHTERRRKPKKSLNVSGPVQSYHPNLKNFWYPVAFSADLKDDSMIPMECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIACPYHGWEYTTDGKCEKMPSTRMLNVKIKSIPCFEKEGMIWIWPGSDPPAASLPSLLPPSGFIVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLKGQSTKECSTHLHQLHVCLPSSKDKTRLLYRMSLDFAPLLKHMPFMEHLWRHFAEQVLNEDLRLVVGQQERMNKGANVWNVYQLPMTSLE*