AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0151510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151510 MtrunA17_Chr1g0159921 99.216 255 2 0 200 454 277 531 0.0 547
Msa0151510 MtrunA17_Chr1g0159921 99.000 200 2 0 1 200 1 200 6.18e-132 391
Msa0151510 MtrunA17_Chr3g0136771 25.000 284 164 15 200 454 166 429 8.65e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151510 AT1G44446.4 82.072 251 45 0 200 450 183 433 2.47e-154 445
Msa0151510 AT1G44446.4 66.981 106 35 0 95 200 1 106 1.78e-35 136
Msa0151510 AT1G44446.1 82.072 251 45 0 200 450 285 535 1.84e-153 446
Msa0151510 AT1G44446.1 65.366 205 64 2 3 200 4 208 7.96e-77 249
Msa0151510 AT1G44446.2 83.920 199 32 0 200 398 285 483 7.05e-119 357
Msa0151510 AT1G44446.2 65.385 208 64 3 1 200 1 208 2.90e-77 250
Msa0151510 AT1G44446.3 65.385 208 64 3 1 200 1 208 3.83e-78 250
Msa0151510 AT1G44446.3 80.392 102 20 0 200 301 285 386 2.51e-47 169
Msa0151510 AT2G24820.1 24.632 272 162 12 200 443 152 408 1.73e-11 66.6

Find 134 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACAACAATCCCCTTTA+AGG 0.138946 1_4:+13625873 None:intergenic
CAGGGTTTGAAAGGTAAATT+TGG 0.219218 1_4:-13629728 Msa0151510:CDS
ACAGTGTTAAATCCAATTTA+TGG 0.235520 1_4:-13625931 Msa0151510:three_prime_UTR
TGGTATAACCACACCCTTAA+AGG 0.244894 1_4:-13625887 Msa0151510:three_prime_UTR
GCTTTGTCCTTTCAATTTCC+CGG 0.258774 1_4:+13627005 None:intergenic
CTCCATAGATGTTCCATAAA+AGG 0.264680 1_4:+13626865 None:intergenic
CAGGTGTGTTGAACATTCTT+TGG 0.268435 1_4:+13626981 None:intergenic
GGTTGAACACGGATTACTTT+TGG 0.283837 1_4:-13627758 Msa0151510:CDS
CATCTGGTCTGCAAGGATAT+TGG 0.286825 1_4:-13627098 Msa0151510:CDS
CTTTATTCATTCTCTCTTGT+TGG 0.291005 1_4:+13626307 None:intergenic
CCTTCTTTACTACCTCCTTC+TGG 0.291205 1_4:-13627950 Msa0151510:CDS
CTTAGTGGCGCTTTAGATCT+TGG 0.291618 1_4:+13629638 None:intergenic
AAGATGGTGAAACCATAAAT+TGG 0.296753 1_4:+13625919 None:intergenic
GTCGATTGGCACCATGAAAA+AGG 0.314224 1_4:-13628971 Msa0151510:CDS
AATGTCGAAGTATGAGTAAA+AGG 0.321362 1_4:+13627709 None:intergenic
AAACTCTTGCTTCAGATATA+TGG 0.329301 1_4:+13628807 None:intergenic
ATCTGGTCTGCAAGGATATT+GGG 0.329604 1_4:-13627097 Msa0151510:CDS
AGCAAGAGTTTCTACTGCTT+TGG 0.334343 1_4:-13628795 Msa0151510:CDS
ACATTTAGCATTCGAGTAGA+TGG 0.343874 1_4:+13628055 None:intergenic
AACCTTGCATTAGAACTTCA+TGG 0.356961 1_4:-13626075 Msa0151510:three_prime_UTR
AAAGGATCTAGCTGGGTTGC+AGG 0.360380 1_4:-13628953 Msa0151510:CDS
ACAGATTGTCATGGAACTTC+CGG 0.364114 1_4:-13627779 Msa0151510:intron
ACACTGTACACAAATTTAAG+AGG 0.365108 1_4:+13625947 None:intergenic
ACTAAGTAAAGGAAAAGTTT+TGG 0.365161 1_4:-13629621 Msa0151510:CDS
TTTGGAGTGTTTGCTGTGTT+TGG 0.368010 1_4:-13629710 Msa0151510:CDS
AAGAAAAGCTTAAATGTATC+AGG 0.384915 1_4:-13628638 Msa0151510:intron
ACTCGCTTACATGGAAGAAT+TGG 0.386034 1_4:-13628768 Msa0151510:CDS
CATACAACAATCCCCTTTAA+GGG 0.387303 1_4:+13625874 None:intergenic
ATCATGCCTAGCTACTTCTA+TGG 0.388459 1_4:+13629586 None:intergenic
AAGAAGGGATGATCTGGATT+TGG 0.390925 1_4:-13628003 Msa0151510:CDS
CCAAGCTTGTCATAGGTAAC+TGG 0.395981 1_4:+13626264 None:intergenic
GGATCCCTATCCGATTGATA+TGG 0.397893 1_4:-13627076 Msa0151510:CDS
GGTATAACCACACCCTTAAA+GGG 0.399225 1_4:-13625886 Msa0151510:three_prime_UTR
ACGCTTCTTAAGATCCAATA+AGG 0.399633 1_4:-13626133 Msa0151510:three_prime_UTR
CTTCCAAGCTTGACACCAAA+AGG 0.403732 1_4:-13630724 Msa0151510:CDS
TGAATAAAGGTGCAAATGTA+TGG 0.404916 1_4:-13626293 Msa0151510:CDS
GGAGTTTCGACCACCTTGTA+TGG 0.406336 1_4:-13627055 Msa0151510:CDS
TTGAGAAAGAAGGGATGATC+TGG 0.411706 1_4:-13628009 Msa0151510:CDS
TTGGAGGGATGCATTGGAAA+AGG 0.412803 1_4:-13626226 Msa0151510:CDS
CTAAGGGATGGAGTGTTCCT+AGG 0.413929 1_4:-13627684 Msa0151510:intron
CCTTACTCCAAGCTTGTCAT+AGG 0.414297 1_4:+13626257 None:intergenic
AGCAGTAGCTATGGCATTCA+TGG 0.421129 1_4:+13630778 None:intergenic
TTGGAGTAAGGTATAGGCTT+TGG 0.424370 1_4:-13626245 Msa0151510:CDS
AAGAAAGAGAGGTACCCTTT+TGG 0.427629 1_4:+13630709 None:intergenic
GTATGGTTCTATCAACCATT+GGG 0.429913 1_4:-13627038 Msa0151510:CDS
TTGGAAGTTCTACAAAAGAT+AGG 0.437166 1_4:+13630740 None:intergenic
TCATATCAACACAACATTCC+CGG 0.445027 1_4:+13626027 None:intergenic
TTAATTATTGTGTGTGTTGA+AGG 0.445378 1_4:+13626188 None:intergenic
ACAAGCTTGGAGTAAGGTAT+AGG 0.446291 1_4:-13626251 Msa0151510:CDS
AAAAGTAATCCGTGTTCAAC+CGG 0.447132 1_4:+13627760 None:intergenic
CTTTGTCCTTTCAATTTCCC+GGG 0.450716 1_4:+13627006 None:intergenic
GGGTGCGATATTTGATGTAC+AGG 0.456724 1_4:-13629663 Msa0151510:CDS
GGTTTCACCATCTTAGATGA+TGG 0.466234 1_4:-13625910 Msa0151510:three_prime_UTR
CCAGAAGGAGGTAGTAAAGA+AGG 0.468373 1_4:+13627950 None:intergenic
TAAAAGGCATATGCTTAAGA+AGG 0.468665 1_4:+13626881 None:intergenic
CAACAAGAGAGAATGAATAA+AGG 0.472000 1_4:-13626306 Msa0151510:CDS
ATGTCGAAGTATGAGTAAAA+GGG 0.472157 1_4:+13627710 None:intergenic
ATGATATTGAGTACTTAGAT+TGG 0.472398 1_4:-13629568 Msa0151510:CDS
TGTATGGTTCTATCAACCAT+TGG 0.476351 1_4:-13627039 Msa0151510:CDS
CATCATGCTCCTCCATGAAA+AGG 0.476387 1_4:-13629522 Msa0151510:intron
TAAAGCAGAAGCAGTAGCTA+TGG 0.478061 1_4:+13630769 None:intergenic
ATCCCTTCTTTCTCAAAACA+TGG 0.488856 1_4:+13628016 None:intergenic
AACAATCCCCTTTAAGGGTG+TGG 0.490466 1_4:+13625879 None:intergenic
TAGGCTTTGGAGGGATGCAT+TGG 0.491835 1_4:-13626232 Msa0151510:CDS
GAGTAAGGTATAGGCTTTGG+AGG 0.496119 1_4:-13626242 Msa0151510:CDS
ACCATTGGGATTTCGAAGCC+CGG 0.501562 1_4:-13627024 Msa0151510:CDS
TTTGGATAAACTCGCTTACA+TGG 0.502971 1_4:-13628777 Msa0151510:CDS
TGGAGGGATGCATTGGAAAA+GGG 0.507380 1_4:-13626225 Msa0151510:CDS
CTATGAAAGTGATGAGAAGA+AGG 0.513839 1_4:+13630801 None:intergenic
ACAGATTTATCAGAAGTACT+TGG 0.516953 1_4:+13628686 None:intergenic
GATTGTAACTCAAACCAGTC+AGG 0.519297 1_4:+13625819 None:intergenic
AAACTCCATATCAATCGGAT+AGG 0.523237 1_4:+13627071 None:intergenic
TCATACTTCGACATTTGCTA+AGG 0.523457 1_4:-13627701 Msa0151510:CDS
ATCAACCTAGTGAAGCTACC+CGG 0.523575 1_4:-13626046 Msa0151510:three_prime_UTR
AGCAGACATGTAGTTGGTGC+AGG 0.524754 1_4:+13626962 None:intergenic
ATTGCTATATAGAATGTCAC+TGG 0.528652 1_4:-13626914 Msa0151510:CDS
GGTCGAAACTCCATATCAAT+CGG 0.530169 1_4:+13627066 None:intergenic
GTTGATTAAGAATTCCTGAC+TGG 0.530223 1_4:-13625833 Msa0151510:three_prime_UTR
AAGAAGGAAGTGATGCTGCT+GGG 0.530413 1_4:+13627966 None:intergenic
TTTCACAAAACAGATTGTCA+TGG 0.531019 1_4:-13627788 Msa0151510:intron
TCTAAAGCGCCACTAAGTAA+AGG 0.531979 1_4:-13629632 Msa0151510:CDS
TCGAAGCCCGGGAAATTGAA+AGG 0.535602 1_4:-13627012 Msa0151510:CDS
CATTCCCGGGTAGCTTCACT+AGG 0.537575 1_4:+13626041 None:intergenic
AGTACTTAGATTGGCGAGCT+CGG 0.538321 1_4:-13629559 Msa0151510:CDS
AAAGAAGGAAGTGATGCTGC+TGG 0.539768 1_4:+13627965 None:intergenic
CCTATGACAAGCTTGGAGTA+AGG 0.541938 1_4:-13626257 Msa0151510:CDS
AGGGTAAGCAGACATGTAGT+TGG 0.544078 1_4:+13626956 None:intergenic
CCATTGGGATTTCGAAGCCC+GGG 0.544164 1_4:-13627023 Msa0151510:CDS
TATACCACCATCATCTAAGA+TGG 0.544882 1_4:+13625903 None:intergenic
TGGAAGAATTGGTAAATGAC+AGG 0.544909 1_4:-13628757 Msa0151510:CDS
GGGATGATCTGGATTTGGCC+TGG 0.548326 1_4:-13627998 Msa0151510:CDS
CATACTTCGACATTTGCTAA+GGG 0.548563 1_4:-13627700 Msa0151510:CDS
CATATCAACACAACATTCCC+GGG 0.548627 1_4:+13626028 None:intergenic
AACTCCATATCAATCGGATA+GGG 0.548896 1_4:+13627072 None:intergenic
CCCGGGCTTCGAAATCCCAA+TGG 0.553272 1_4:+13627023 None:intergenic
CTTCGACATTTGCTAAGGGA+TGG 0.553640 1_4:-13627696 Msa0151510:CDS
AAAAGGCATATGCTTAAGAA+GGG 0.554581 1_4:+13626882 None:intergenic
ATCAGAAGTACTTGGAGAAG+AGG 0.554772 1_4:+13628694 None:intergenic
CTGTACATACTGAAAGAAGA+AGG 0.555644 1_4:-13628667 Msa0151510:CDS
CCAGTTACCTATGACAAGCT+TGG 0.556416 1_4:-13626264 Msa0151510:CDS
GAGGATCTACGGCTAGTAGT+TGG 0.556957 1_4:-13626330 Msa0151510:CDS
GCTCGTGAATTCAAGTCGAT+TGG 0.558329 1_4:-13628985 Msa0151510:CDS
ATTAGCAGAAGCACACAGAC+AGG 0.563331 1_4:-13628926 Msa0151510:intron
AGAAGGAAGTGATGCTGCTG+GGG 0.573018 1_4:+13627967 None:intergenic
GGCTGGGAATATACGACAGA+CGG 0.577816 1_4:-13628094 Msa0151510:CDS
TTCCAAGCTTGACACCAAAA+GGG 0.583881 1_4:-13630723 Msa0151510:intron
AGCAGACAAGAAAAGTGCGT+GGG 0.586221 1_4:-13629684 Msa0151510:CDS
TTCAAGCCATAGAAGTAGCT+AGG 0.586372 1_4:-13629592 Msa0151510:CDS
TATCCTTGCAGACCAGATGC+CGG 0.588286 1_4:+13627102 None:intergenic
ACTTATTAAATACCTCGGCA+TGG 0.591232 1_4:+13627918 None:intergenic
AGCCATGAAGTTCTAATGCA+AGG 0.595362 1_4:+13626073 None:intergenic
TCAACCTAGTGAAGCTACCC+GGG 0.600321 1_4:-13626045 Msa0151510:three_prime_UTR
GGGCGTGCGCAAGATCCAAA+AGG 0.603628 1_4:+13627731 None:intergenic
GACTTGAATTCACGAGCTAG+AGG 0.604846 1_4:+13628991 None:intergenic
ATGGAACTTCCGGTTGAACA+CGG 0.610594 1_4:-13627769 Msa0151510:CDS
ACACCGGCATCTGGTCTGCA+AGG 0.613320 1_4:-13627105 Msa0151510:CDS
TTCACCATCTTAGATGATGG+TGG 0.616046 1_4:-13625907 Msa0151510:three_prime_UTR
TAATTATTGTGTGTGTTGAA+GGG 0.617559 1_4:+13626189 None:intergenic
TGTTCCTTTGTAGAATGACA+AGG 0.617585 1_4:-13626001 Msa0151510:three_prime_UTR
TGTCGAAGTATGAGTAAAAG+GGG 0.625361 1_4:+13627711 None:intergenic
ACTTGGAGAAGAGGACGTCT+CGG 0.627193 1_4:+13628703 None:intergenic
ATGGTTGATAGAACCATACA+AGG 0.639943 1_4:+13627042 None:intergenic
AGTAAGGTATAGGCTTTGGA+GGG 0.643282 1_4:-13626241 Msa0151510:CDS
AAAGGCATATGCTTAAGAAG+GGG 0.645865 1_4:+13626883 None:intergenic
TGGATTTATAGTCCATGCCG+AGG 0.645907 1_4:-13627930 Msa0151510:intron
GCATGGACTATAAATCCAGA+AGG 0.652893 1_4:+13627935 None:intergenic
GTATAACCACACCCTTAAAG+GGG 0.658662 1_4:-13625885 Msa0151510:three_prime_UTR
GAAGGAAGTGATGCTGCTGG+GGG 0.661858 1_4:+13627968 None:intergenic
ACAACCTTGTCATTCTACAA+AGG 0.662518 1_4:+13625997 None:intergenic
TGGACTATAAATCCAGAAGG+AGG 0.679360 1_4:+13627938 None:intergenic
AAGCAGACAAGAAAAGTGCG+TGG 0.679985 1_4:-13629685 Msa0151510:CDS
AATGACAAGGTTGTACTCTG+AGG 0.680999 1_4:-13625988 Msa0151510:three_prime_UTR
GCAGACAAGAAAAGTGCGTG+GGG 0.696719 1_4:-13629683 Msa0151510:CDS
GTTGATAGAACCATACAAGG+TGG 0.758266 1_4:+13627045 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATCTAAATTTAATAG+CGG + chr1_4:13626450-13626469 None:intergenic 10.0%
!! ATTAAGTTTAAATTTAACAA+TGG + chr1_4:13626775-13626794 None:intergenic 10.0%
!! TCAAAAGAACAAAAAAAAAA+AGG + chr1_4:13625993-13626012 None:intergenic 15.0%
!! TATAAATTTAGTCACTATTT+AGG - chr1_4:13626197-13626216 Msa0151510:CDS 15.0%
!! TTATGAAATGATAGATTTAT+AGG - chr1_4:13629478-13629497 Msa0151510:intron 15.0%
!! AGAAAAAAAAATATCCTTAT+TGG + chr1_4:13630537-13630556 None:intergenic 15.0%
!!! TATCATACATTGTTTCTTTT+AGG - chr1_4:13626402-13626421 Msa0151510:intron 20.0%
!!! GTTTCTTTTAGGTTTTTAAT+AGG - chr1_4:13626413-13626432 Msa0151510:intron 20.0%
!!! TTTATGTTTTTTGTGTAAAC+TGG - chr1_4:13626472-13626491 Msa0151510:intron 20.0%
!!! TTCTTTAGCTTATACTTTTT+TGG - chr1_4:13626890-13626909 Msa0151510:CDS 20.0%
!!! TCTTTAGCTTATACTTTTTT+GGG - chr1_4:13626891-13626910 Msa0151510:CDS 20.0%
!! TCTTAATAATCAGAAACTAT+TGG - chr1_4:13627616-13627635 Msa0151510:intron 20.0%
!! AGAAATTCTTTAAATTAGGA+TGG + chr1_4:13628056-13628075 None:intergenic 20.0%
!! ATCCTAATTTAAAGAATTTC+TGG - chr1_4:13628055-13628074 Msa0151510:CDS 20.0%
!! TACCAGAAATTCTTTAAATT+AGG + chr1_4:13628060-13628079 None:intergenic 20.0%
!! ACTATACTTATTAAATACCT+CGG + chr1_4:13628743-13628762 None:intergenic 20.0%
!! AAAAAAGAAGATAAAAGTCA+TGG - chr1_4:13628825-13628844 Msa0151510:intron 20.0%
!! TTGAATCATATCACTTATAA+GGG + chr1_4:13629010-13629029 None:intergenic 20.0%
!! ATTGAATCATATCACTTATA+AGG + chr1_4:13629011-13629030 None:intergenic 20.0%
!! TTCATGTATCATAATAACTT+AGG - chr1_4:13629142-13629161 Msa0151510:intron 20.0%
!! TCATGTATCATAATAACTTA+GGG - chr1_4:13629143-13629162 Msa0151510:intron 20.0%
!! TCAAATAAGCAAATTAAAAC+AGG + chr1_4:13629169-13629188 None:intergenic 20.0%
!!! ATTTTTCTGAAATCAAGTTA+TGG + chr1_4:13630134-13630153 None:intergenic 20.0%
!! TTCAAACTCGAATTCTAAAA+TGG + chr1_4:13626339-13626358 None:intergenic 25.0%
!! AATATTATGTCCTTTTACTC+TGG - chr1_4:13626644-13626663 Msa0151510:intron 25.0%
! AAACCATACTCTTTCATATA+TGG + chr1_4:13626866-13626885 None:intergenic 25.0%
!! AAAACTTTTCCTTTACTTAG+TGG + chr1_4:13627033-13627052 None:intergenic 25.0%
!! ACTAAGTAAAGGAAAAGTTT+TGG - chr1_4:13627032-13627051 Msa0151510:CDS 25.0%
! ATGATATTGAGTACTTAGAT+TGG - chr1_4:13627085-13627104 Msa0151510:CDS 25.0%
! TCAATTCAAACAAACATAGA+TGG + chr1_4:13627283-13627302 None:intergenic 25.0%
! TGATTATTAAGATAAGCACA+TGG + chr1_4:13627608-13627627 None:intergenic 25.0%
! ATAAGTTAATGAATTACTGC+AGG - chr1_4:13627822-13627841 Msa0151510:intron 25.0%
!! GATACATTTAAGCTTTTCTT+CGG + chr1_4:13628015-13628034 None:intergenic 25.0%
! AAGAAAAGCTTAAATGTATC+AGG - chr1_4:13628015-13628034 Msa0151510:CDS 25.0%
! CAAAAAATGGTATATTTGCA+AGG + chr1_4:13628181-13628200 None:intergenic 25.0%
! AAAGGACTAAAAGCAAAAAA+TGG + chr1_4:13628194-13628213 None:intergenic 25.0%
! AGACGACAAATATCTTTAAA+AGG + chr1_4:13628212-13628231 None:intergenic 25.0%
! TCTCATAGAAATAAATCTGT+TGG + chr1_4:13628506-13628525 None:intergenic 25.0%
! TCAATATGCGAAAATGAAAT+TGG - chr1_4:13629026-13629045 Msa0151510:intron 25.0%
! AATAAGCAGAAAACAACTTA+TGG + chr1_4:13629261-13629280 None:intergenic 25.0%
!!! CTTGTTTTATCTTTTGAAGA+GGG + chr1_4:13629719-13629738 None:intergenic 25.0%
!!! TCTTGTTTTATCTTTTGAAG+AGG + chr1_4:13629720-13629739 None:intergenic 25.0%
! TTGTGAATTGACATCAAAAA+GGG + chr1_4:13629845-13629864 None:intergenic 25.0%
! ATTGTGAATTGACATCAAAA+AGG + chr1_4:13629846-13629865 None:intergenic 25.0%
!! CTTCAAAAGGAACAAATTTT+GGG - chr1_4:13629911-13629930 Msa0151510:intron 25.0%
!!! GAACAAATTTTGGGTATTTA+TGG - chr1_4:13629920-13629939 Msa0151510:intron 25.0%
! GATTATTAACTACTCAACAT+TGG - chr1_4:13630069-13630088 Msa0151510:intron 25.0%
!!! ATCTTTCTTGTGTTTGTTTT+TGG - chr1_4:13630216-13630235 Msa0151510:intron 25.0%
!! CTCATTTAAAACCTAAAGTA+TGG + chr1_4:13630306-13630325 None:intergenic 25.0%
!!! CATACTTTAGGTTTTAAATG+AGG - chr1_4:13630304-13630323 Msa0151510:intron 25.0%
! TAATTATTGTGTGTGTTGAA+GGG + chr1_4:13630467-13630486 None:intergenic 25.0%
! TTAATTATTGTGTGTGTTGA+AGG + chr1_4:13630468-13630487 None:intergenic 25.0%
! ACAGTGTTAAATCCAATTTA+TGG - chr1_4:13630722-13630741 Msa0151510:intron 25.0%
TTGGAAGTTCTACAAAAGAT+AGG + chr1_4:13625916-13625935 None:intergenic 30.0%
!!! GATTAGTTGCTTGTTTTGTA+AGG - chr1_4:13626011-13626030 Msa0151510:three_prime_UTR 30.0%
!! GTAAACTTAGCTTTTAGTCT+TGG - chr1_4:13626109-13626128 Msa0151510:three_prime_UTR 30.0%
!! TGACTTTAAGTTGACTTGTA+AGG - chr1_4:13626145-13626164 Msa0151510:three_prime_UTR 30.0%
!! TTAAGTTGACTTGTAAGGTA+AGG - chr1_4:13626150-13626169 Msa0151510:three_prime_UTR 30.0%
!! TAAGTTGACTTGTAAGGTAA+GGG - chr1_4:13626151-13626170 Msa0151510:three_prime_UTR 30.0%
! CAATTGATCTAAGATAGGTT+CGG - chr1_4:13626310-13626329 Msa0151510:CDS 30.0%
TCTAAATTTAATAGCGGCAT+AGG + chr1_4:13626444-13626463 None:intergenic 30.0%
GAACTTAGAGAAACGAATTT+CGG - chr1_4:13626601-13626620 Msa0151510:intron 30.0%
! TAAAAGTACACCAGAGTAAA+AGG + chr1_4:13626657-13626676 None:intergenic 30.0%
ATACTCTTTCATATATGGAC+CGG + chr1_4:13626861-13626880 None:intergenic 30.0%
! AATTAGCTGAAACCTTTTCA+TGG + chr1_4:13627146-13627165 None:intergenic 30.0%
! GGTACTATATAACTTTTGAC+TGG - chr1_4:13627254-13627273 Msa0151510:intron 30.0%
GACATATTTGAGCTTATCTA+TGG - chr1_4:13627301-13627320 Msa0151510:intron 30.0%
CTTATTTCCATAAACTCTCT+AGG - chr1_4:13627397-13627416 Msa0151510:intron 30.0%
ATATAGGGAGAATACAACAA+CGG + chr1_4:13627567-13627586 None:intergenic 30.0%
GATGCTTTATAGCACATATA+GGG + chr1_4:13627582-13627601 None:intergenic 30.0%
TATTAAGATAAGCACATGGT+GGG + chr1_4:13627604-13627623 None:intergenic 30.0%
TTATTAAGATAAGCACATGG+TGG + chr1_4:13627605-13627624 None:intergenic 30.0%
TAATCAGAAACTATTGGTGT+AGG - chr1_4:13627622-13627641 Msa0151510:intron 30.0%
AAACTCTTGCTTCAGATATA+TGG + chr1_4:13627849-13627868 None:intergenic 30.0%
!! ACAGATTTATCAGAAGTACT+TGG + chr1_4:13627970-13627989 None:intergenic 30.0%
CAGAAACTGAAATTTCCTAA+TGG - chr1_4:13628526-13628545 Msa0151510:intron 30.0%
AACTGAAATTTCCTAATGGT+TGG - chr1_4:13628530-13628549 Msa0151510:intron 30.0%
!!! ATTCCATGTTTTGAGAAAGA+AGG - chr1_4:13628634-13628653 Msa0151510:intron 30.0%
!!! TTCCATGTTTTGAGAAAGAA+GGG - chr1_4:13628635-13628654 Msa0151510:intron 30.0%
TAAGTATAGTCTGTCCTAAT+AGG - chr1_4:13628753-13628772 Msa0151510:CDS 30.0%
CATAGCTTAGAATACCTATT+AGG + chr1_4:13628770-13628789 None:intergenic 30.0%
! TCTGTTTTGTGAAAAGATAC+CGG + chr1_4:13628859-13628878 None:intergenic 30.0%
TTTCACAAAACAGATTGTCA+TGG - chr1_4:13628865-13628884 Msa0151510:intron 30.0%
!! ATTACTTTTGGACAACCTTT+TGG - chr1_4:13628907-13628926 Msa0151510:intron 30.0%
ATGTCGAAGTATGAGTAAAA+GGG + chr1_4:13628946-13628965 None:intergenic 30.0%
AATGTCGAAGTATGAGTAAA+AGG + chr1_4:13628947-13628966 None:intergenic 30.0%
! GAAGTCTTTTTCTTTTGACA+AGG - chr1_4:13629088-13629107 Msa0151510:intron 30.0%
CTTATTTGAGCTTATTTACC+TGG - chr1_4:13629180-13629199 Msa0151510:intron 30.0%
! ATGATATGCTTTTATGATGC+AGG - chr1_4:13629373-13629392 Msa0151510:intron 30.0%
!!! CTTTGTGAATTTTTTGACAC+CGG - chr1_4:13629532-13629551 Msa0151510:CDS 30.0%
ATTGCTATATAGAATGTCAC+TGG - chr1_4:13629739-13629758 Msa0151510:intron 30.0%
! AAAAGGCATATGCTTAAGAA+GGG + chr1_4:13629774-13629793 None:intergenic 30.0%
! TAAAAGGCATATGCTTAAGA+AGG + chr1_4:13629775-13629794 None:intergenic 30.0%
! TCTTAAGCATATGCCTTTTA+TGG - chr1_4:13629775-13629794 Msa0151510:intron 30.0%
!!! TTTTGAAGCGTAACTCATTT+TGG + chr1_4:13629899-13629918 None:intergenic 30.0%
AAAATGAGTTACGCTTCAAA+AGG - chr1_4:13629898-13629917 Msa0151510:intron 30.0%
! GCTTCAAAAGGAACAAATTT+TGG - chr1_4:13629910-13629929 Msa0151510:intron 30.0%
! TATCTGATTTTCTAACCACT+CGG + chr1_4:13630007-13630026 None:intergenic 30.0%
AATCAGATACCATAAGAAAG+TGG - chr1_4:13630018-13630037 Msa0151510:intron 30.0%
GCACATATGATGAATAGTTA+TGG + chr1_4:13630112-13630131 None:intergenic 30.0%
!!! AGGTTTTAAATGAGGATCTA+CGG - chr1_4:13630312-13630331 Msa0151510:intron 30.0%
CTTTATTCATTCTCTCTTGT+TGG + chr1_4:13630349-13630368 None:intergenic 30.0%
CAACAAGAGAGAATGAATAA+AGG - chr1_4:13630347-13630366 Msa0151510:intron 30.0%
! TGAATAAAGGTGCAAATGTA+TGG - chr1_4:13630360-13630379 Msa0151510:intron 30.0%
ACACTGTACACAAATTTAAG+AGG + chr1_4:13630709-13630728 None:intergenic 30.0%
AAGATGGTGAAACCATAAAT+TGG + chr1_4:13630737-13630756 None:intergenic 30.0%
CTATGAAAGTGATGAGAAGA+AGG + chr1_4:13625855-13625874 None:intergenic 35.0%
AGAAGAAGAAGAAGAAAGAG+AGG + chr1_4:13625958-13625977 None:intergenic 35.0%
GTGAGTGGTTTAATAATAGG+TGG - chr1_4:13626285-13626304 Msa0151510:CDS 35.0%
! TGGCTCAATTGATCTAAGAT+AGG - chr1_4:13626305-13626324 Msa0151510:CDS 35.0%
TGAACATAACTCGACAAAGT+TGG - chr1_4:13626355-13626374 Msa0151510:intron 35.0%
! TGACAACTTGTCATCCATTT+TGG + chr1_4:13626541-13626560 None:intergenic 35.0%
AACACTTCGTACAAAACTGT+AGG + chr1_4:13626729-13626748 None:intergenic 35.0%
AAGAAAGTTTCTCCTGTGTA+GGG - chr1_4:13626825-13626844 Msa0151510:intron 35.0%
GGTCCATATATGAAAGAGTA+TGG - chr1_4:13626860-13626879 Msa0151510:CDS 35.0%
!!! GCTTATACTTTTTTGGGTTG+TGG - chr1_4:13626897-13626916 Msa0151510:CDS 35.0%
!!! TTTTTGGGTTGTGGATTTTC+AGG - chr1_4:13626906-13626925 Msa0151510:CDS 35.0%
!!! TTTTGGGTTGTGGATTTTCA+GGG - chr1_4:13626907-13626926 Msa0151510:CDS 35.0%
CAGGGTTTGAAAGGTAAATT+TGG - chr1_4:13626925-13626944 Msa0151510:CDS 35.0%
GTTGGATCAAATTAGAGACT+TGG - chr1_4:13627233-13627252 Msa0151510:intron 35.0%
AATAAGCTGAAAGCAGCTTA+TGG + chr1_4:13627383-13627402 None:intergenic 35.0%
AAGCTATCCTAGAGAGTTTA+TGG + chr1_4:13627407-13627426 None:intergenic 35.0%
AAGCTGTTTATCCAAACAAG+TGG - chr1_4:13627529-13627548 Msa0151510:intron 35.0%
AGCTGTTTATCCAAACAAGT+GGG - chr1_4:13627530-13627549 Msa0151510:intron 35.0%
CAAACTTTATCCCACTTGTT+TGG + chr1_4:13627543-13627562 None:intergenic 35.0%
CAAACAAGTGGGATAAAGTT+TGG - chr1_4:13627541-13627560 Msa0151510:intron 35.0%
GGATGCTTTATAGCACATAT+AGG + chr1_4:13627583-13627602 None:intergenic 35.0%
! CAAATCCGAATTTGAAGCTT+TGG + chr1_4:13627788-13627807 None:intergenic 35.0%
TTTGGATAAACTCGCTTACA+TGG - chr1_4:13627876-13627895 Msa0151510:intron 35.0%
TGGAAGAATTGGTAAATGAC+AGG - chr1_4:13627896-13627915 Msa0151510:intron 35.0%
CTGTACATACTGAAAGAAGA+AGG - chr1_4:13627986-13628005 Msa0151510:CDS 35.0%
TGACTTAAAGGATGATTCCA+TGG - chr1_4:13628098-13628117 Msa0151510:intron 35.0%
GTTCCTCAAAACATTCCATT+GGG + chr1_4:13628274-13628293 None:intergenic 35.0%
! GTTATCTTTAGGGGTAAAGA+TGG - chr1_4:13628299-13628318 Msa0151510:intron 35.0%
!! CATGTATTTTGAACACATCC+AGG + chr1_4:13628329-13628348 None:intergenic 35.0%
ATTTACAGAGCCAAGATGAA+GGG + chr1_4:13628369-13628388 None:intergenic 35.0%
TAGTAGTGAGTTACATGACA+TGG - chr1_4:13628480-13628499 Msa0151510:intron 35.0%
TTTCCTAATGGTTGGATATC+AGG - chr1_4:13628538-13628557 Msa0151510:intron 35.0%
ACATTTAGCATTCGAGTAGA+TGG + chr1_4:13628601-13628620 None:intergenic 35.0%
ATCCCTTCTTTCTCAAAACA+TGG + chr1_4:13628640-13628659 None:intergenic 35.0%
ACTTATTAAATACCTCGGCA+TGG + chr1_4:13628738-13628757 None:intergenic 35.0%
AAAAGTCATGGTTTCTTACC+CGG - chr1_4:13628837-13628856 Msa0151510:intron 35.0%
! CTGTTTTGTGAAAAGATACC+GGG + chr1_4:13628858-13628877 None:intergenic 35.0%
AAAAGTAATCCGTGTTCAAC+CGG + chr1_4:13628896-13628915 None:intergenic 35.0%
TGTCGAAGTATGAGTAAAAG+GGG + chr1_4:13628945-13628964 None:intergenic 35.0%
! TCATACTTCGACATTTGCTA+AGG - chr1_4:13628952-13628971 Msa0151510:CDS 35.0%
! CATACTTCGACATTTGCTAA+GGG - chr1_4:13628953-13628972 Msa0151510:CDS 35.0%
GGTATAAACGAAACAAACCT+AGG + chr1_4:13628989-13629008 None:intergenic 35.0%
TTATTTCCATGAGTTCTCCA+AGG - chr1_4:13629276-13629295 Msa0151510:intron 35.0%
ATTTACATAAGCTGCTACCT+TGG + chr1_4:13629296-13629315 None:intergenic 35.0%
GCGCAAATCAGAAATATCTA+AGG + chr1_4:13629419-13629438 None:intergenic 35.0%
AACTCCATATCAATCGGATA+GGG + chr1_4:13629584-13629603 None:intergenic 35.0%
AAACTCCATATCAATCGGAT+AGG + chr1_4:13629585-13629604 None:intergenic 35.0%
!! ATGGTTGATAGAACCATACA+AGG + chr1_4:13629614-13629633 None:intergenic 35.0%
! TGTATGGTTCTATCAACCAT+TGG - chr1_4:13629614-13629633 Msa0151510:CDS 35.0%
! GTATGGTTCTATCAACCATT+GGG - chr1_4:13629615-13629634 Msa0151510:CDS 35.0%
! AAAGGCATATGCTTAAGAAG+GGG + chr1_4:13629773-13629792 None:intergenic 35.0%
! TGCCTTTTATGGAACATCTA+TGG - chr1_4:13629786-13629805 Msa0151510:intron 35.0%
CTCCATAGATGTTCCATAAA+AGG + chr1_4:13629791-13629810 None:intergenic 35.0%
! CTTTTATGGAACATCTATGG+AGG - chr1_4:13629789-13629808 Msa0151510:intron 35.0%
CAATTGATTGTGTTTGAGCA+AGG - chr1_4:13629862-13629881 Msa0151510:intron 35.0%
GTGTTTGAGCAAGGAATAAA+AGG - chr1_4:13629871-13629890 Msa0151510:intron 35.0%
! AAAGTGGTAATGTGCCTAAT+TGG - chr1_4:13630034-13630053 Msa0151510:intron 35.0%
ACGCTTCTTAAGATCCAATA+AGG - chr1_4:13630520-13630539 Msa0151510:intron 35.0%
AACCTTGCATTAGAACTTCA+TGG - chr1_4:13630578-13630597 Msa0151510:intron 35.0%
TCATATCAACACAACATTCC+CGG + chr1_4:13630629-13630648 None:intergenic 35.0%
TGTTCCTTTGTAGAATGACA+AGG - chr1_4:13630652-13630671 Msa0151510:intron 35.0%
ACAACCTTGTCATTCTACAA+AGG + chr1_4:13630659-13630678 None:intergenic 35.0%
TATACCACCATCATCTAAGA+TGG + chr1_4:13630753-13630772 None:intergenic 35.0%
CATACAACAATCCCCTTTAA+GGG + chr1_4:13630782-13630801 None:intergenic 35.0%
TCATACAACAATCCCCTTTA+AGG + chr1_4:13630783-13630802 None:intergenic 35.0%
GTTGATTAAGAATTCCTGAC+TGG - chr1_4:13630820-13630839 Msa0151510:five_prime_UTR 35.0%
TAAAGCAGAAGCAGTAGCTA+TGG + chr1_4:13625887-13625906 None:intergenic 40.0%
TTCCAAGCTTGACACCAAAA+GGG - chr1_4:13625930-13625949 Msa0151510:three_prime_UTR 40.0%
!!! AAGAAAGAGAGGTACCCTTT+TGG + chr1_4:13625947-13625966 None:intergenic 40.0%
!!! GTCACAGGTTTTGAGATTGA+GGG + chr1_4:13626261-13626280 None:intergenic 40.0%
!!! AGTCACAGGTTTTGAGATTG+AGG + chr1_4:13626262-13626281 None:intergenic 40.0%
CAATCTCAAAACCTGTGACT+CGG - chr1_4:13626262-13626281 Msa0151510:CDS 40.0%
AATCTCAAAACCTGTGACTC+GGG - chr1_4:13626263-13626282 Msa0151510:CDS 40.0%
CGGGTGAGTGGTTTAATAAT+AGG - chr1_4:13626282-13626301 Msa0151510:CDS 40.0%
ACATAACTCGACAAAGTTGG+AGG - chr1_4:13626358-13626377 Msa0151510:intron 40.0%
ACCCTAATTTGAGCATGCAA+CGG + chr1_4:13626579-13626598 None:intergenic 40.0%
GAAGAAAGTTTCTCCTGTGT+AGG - chr1_4:13626824-13626843 Msa0151510:intron 40.0%
!! GTGGATTTTCAGGGTTTGAA+AGG - chr1_4:13626916-13626935 Msa0151510:CDS 40.0%
!! TTTGGAGTGTTTGCTGTGTT+TGG - chr1_4:13626943-13626962 Msa0151510:CDS 40.0%
! TCTAAAGCGCCACTAAGTAA+AGG - chr1_4:13627021-13627040 Msa0151510:CDS 40.0%
TTCAAGCCATAGAAGTAGCT+AGG - chr1_4:13627061-13627080 Msa0151510:CDS 40.0%
ATCATGCCTAGCTACTTCTA+TGG + chr1_4:13627070-13627089 None:intergenic 40.0%
! TAGCTGAAACCTTTTCATGG+AGG + chr1_4:13627143-13627162 None:intergenic 40.0%
GTCTCTAATTTGATCCAACG+AGG + chr1_4:13627232-13627251 None:intergenic 40.0%
TAAGCCCTTGTGAGACTATT+TGG - chr1_4:13627327-13627346 Msa0151510:intron 40.0%
AAGCCCTTGTGAGACTATTT+GGG - chr1_4:13627328-13627347 Msa0151510:intron 40.0%
TCTCCCAAATAGTCTCACAA+GGG + chr1_4:13627334-13627353 None:intergenic 40.0%
TCAGAAACTATTGGTGTAGG+TGG - chr1_4:13627625-13627644 Msa0151510:intron 40.0%
ACCATGAAAAAGGATCTAGC+TGG - chr1_4:13627692-13627711 Msa0151510:CDS 40.0%
CCATGAAAAAGGATCTAGCT+GGG - chr1_4:13627693-13627712 Msa0151510:CDS 40.0%
AGCCACCAAAGCTTCAAATT+CGG - chr1_4:13627780-13627799 Msa0151510:intron 40.0%
! ATCCGAATTTGAAGCTTTGG+TGG + chr1_4:13627785-13627804 None:intergenic 40.0%
AGCAAGAGTTTCTACTGCTT+TGG - chr1_4:13627858-13627877 Msa0151510:intron 40.0%
ACTCGCTTACATGGAAGAAT+TGG - chr1_4:13627885-13627904 Msa0151510:intron 40.0%
!! ATCAGAAGTACTTGGAGAAG+AGG + chr1_4:13627962-13627981 None:intergenic 40.0%
TTAGGATGGTATGACTGAAC+TGG + chr1_4:13628042-13628061 None:intergenic 40.0%
!! TGCTTTCTCTGCTGACTTAA+AGG - chr1_4:13628086-13628105 Msa0151510:CDS 40.0%
GGATTGATATCGACATACCA+TGG + chr1_4:13628118-13628137 None:intergenic 40.0%
! TTCCATTGGGATCTGGAATA+GGG + chr1_4:13628261-13628280 None:intergenic 40.0%
! ATTCCATTGGGATCTGGAAT+AGG + chr1_4:13628262-13628281 None:intergenic 40.0%
CAAAACATTCCATTGGGATC+TGG + chr1_4:13628268-13628287 None:intergenic 40.0%
! GATCCCAATGGAATGTTTTG+AGG - chr1_4:13628268-13628287 Msa0151510:intron 40.0%
GGTTCCTCAAAACATTCCAT+TGG + chr1_4:13628275-13628294 None:intergenic 40.0%
!!! TGGAATGTTTTGAGGAACCA+TGG - chr1_4:13628276-13628295 Msa0151510:intron 40.0%
!!! GGAATGTTTTGAGGAACCAT+GGG - chr1_4:13628277-13628296 Msa0151510:intron 40.0%
! AGGAACCATGGGTTATCTTT+AGG - chr1_4:13628288-13628307 Msa0151510:intron 40.0%
! GGAACCATGGGTTATCTTTA+GGG - chr1_4:13628289-13628308 Msa0151510:intron 40.0%
! GAACCATGGGTTATCTTTAG+GGG - chr1_4:13628290-13628309 Msa0151510:intron 40.0%
TTACCCCTAAAGATAACCCA+TGG + chr1_4:13628296-13628315 None:intergenic 40.0%
TTTACAGAGCCAAGATGAAG+GGG + chr1_4:13628368-13628387 None:intergenic 40.0%
CATTTACAGAGCCAAGATGA+AGG + chr1_4:13628370-13628389 None:intergenic 40.0%
!! TCATCTTGGCTCTGTAAATG+AGG - chr1_4:13628370-13628389 Msa0151510:intron 40.0%
!! CATCTTGGCTCTGTAAATGA+GGG - chr1_4:13628371-13628390 Msa0151510:intron 40.0%
GATGAATACTAACCGTGGTA+GGG + chr1_4:13628410-13628429 None:intergenic 40.0%
CTACCACGGTTAGTATTCAT+CGG - chr1_4:13628409-13628428 Msa0151510:intron 40.0%
TAATGGTTGGATATCAGGCT+GGG - chr1_4:13628543-13628562 Msa0151510:intron 40.0%
TTGAGAAAGAAGGGATGATC+TGG - chr1_4:13628644-13628663 Msa0151510:CDS 40.0%
AAGAAGGGATGATCTGGATT+TGG - chr1_4:13628650-13628669 Msa0151510:CDS 40.0%
TGGACTATAAATCCAGAAGG+AGG + chr1_4:13628718-13628737 None:intergenic 40.0%
! GCATGGACTATAAATCCAGA+AGG + chr1_4:13628721-13628740 None:intergenic 40.0%
ACAGATTGTCATGGAACTTC+CGG - chr1_4:13628874-13628893 Msa0151510:intron 40.0%
!! GGTTGAACACGGATTACTTT+TGG - chr1_4:13628895-13628914 Msa0151510:intron 40.0%
!!! AATTTTTTGACACCGGCATC+TGG - chr1_4:13629539-13629558 Msa0151510:CDS 40.0%
ATCTGGTCTGCAAGGATATT+GGG - chr1_4:13629556-13629575 Msa0151510:CDS 40.0%
GGTCGAAACTCCATATCAAT+CGG + chr1_4:13629590-13629609 None:intergenic 40.0%
! GTTGATAGAACCATACAAGG+TGG + chr1_4:13629611-13629630 None:intergenic 40.0%
CTTTGTCCTTTCAATTTCCC+GGG + chr1_4:13629650-13629669 None:intergenic 40.0%
GCTTTGTCCTTTCAATTTCC+CGG + chr1_4:13629651-13629670 None:intergenic 40.0%
CAGGTGTGTTGAACATTCTT+TGG + chr1_4:13629675-13629694 None:intergenic 40.0%
GGCACATTACCACTTTCTTA+TGG + chr1_4:13630030-13630049 None:intergenic 40.0%
TCTCCATCGAAGAACCAATT+AGG + chr1_4:13630051-13630070 None:intergenic 40.0%
ACAAGCTTGGAGTAAGGTAT+AGG - chr1_4:13630402-13630421 Msa0151510:intron 40.0%
TTGGAGTAAGGTATAGGCTT+TGG - chr1_4:13630408-13630427 Msa0151510:intron 40.0%
!! AGTAAGGTATAGGCTTTGGA+GGG - chr1_4:13630412-13630431 Msa0151510:intron 40.0%
! AGCCATGAAGTTCTAATGCA+AGG + chr1_4:13630583-13630602 None:intergenic 40.0%
CATATCAACACAACATTCCC+GGG + chr1_4:13630628-13630647 None:intergenic 40.0%
AATGACAAGGTTGTACTCTG+AGG - chr1_4:13630665-13630684 Msa0151510:intron 40.0%
GGTTTCACCATCTTAGATGA+TGG - chr1_4:13630743-13630762 Msa0151510:CDS 40.0%
! TTCACCATCTTAGATGATGG+TGG - chr1_4:13630746-13630765 Msa0151510:CDS 40.0%
TGGTATAACCACACCCTTAA+AGG - chr1_4:13630766-13630785 Msa0151510:CDS 40.0%
GGTATAACCACACCCTTAAA+GGG - chr1_4:13630767-13630786 Msa0151510:CDS 40.0%
GTATAACCACACCCTTAAAG+GGG - chr1_4:13630768-13630787 Msa0151510:CDS 40.0%
GATTGTAACTCAAACCAGTC+AGG + chr1_4:13630837-13630856 None:intergenic 40.0%
AGCAGTAGCTATGGCATTCA+TGG + chr1_4:13625878-13625897 None:intergenic 45.0%
CTTCCAAGCTTGACACCAAA+AGG - chr1_4:13625929-13625948 Msa0151510:three_prime_UTR 45.0%
!!! TACCCTTTTGGTGTCAAGCT+TGG + chr1_4:13625935-13625954 None:intergenic 45.0%
!! TCATCCATTTTGGTCCCACA+AGG + chr1_4:13626531-13626550 None:intergenic 45.0%
TGCAACGGCGTTAAAACTCT+TGG + chr1_4:13626564-13626583 None:intergenic 45.0%
GCCGTTGCATGCTCAAATTA+GGG - chr1_4:13626575-13626594 Msa0151510:intron 45.0%
TGTGTAGGGTCTACATCTTC+CGG - chr1_4:13626839-13626858 Msa0151510:intron 45.0%
! AAGCAGACAAGAAAAGTGCG+TGG - chr1_4:13626968-13626987 Msa0151510:CDS 45.0%
! AGCAGACAAGAAAAGTGCGT+GGG - chr1_4:13626969-13626988 Msa0151510:CDS 45.0%
GGGTGCGATATTTGATGTAC+AGG - chr1_4:13626990-13627009 Msa0151510:CDS 45.0%
! CTTAGTGGCGCTTTAGATCT+TGG + chr1_4:13627018-13627037 None:intergenic 45.0%
AGTACTTAGATTGGCGAGCT+CGG - chr1_4:13627094-13627113 Msa0151510:CDS 45.0%
!! CTTTTCATGGAGGAGCATGA+TGG + chr1_4:13627133-13627152 None:intergenic 45.0%
CATCATGCTCCTCCATGAAA+AGG - chr1_4:13627131-13627150 Msa0151510:intron 45.0%
CTCTCCCAAATAGTCTCACA+AGG + chr1_4:13627335-13627354 None:intergenic 45.0%
GACTTGAATTCACGAGCTAG+AGG + chr1_4:13627665-13627684 None:intergenic 45.0%
GCTCGTGAATTCAAGTCGAT+TGG - chr1_4:13627668-13627687 Msa0151510:intron 45.0%
GTCGATTGGCACCATGAAAA+AGG - chr1_4:13627682-13627701 Msa0151510:intron 45.0%
!! CCCAGCTAGATCCTTTTTCA+TGG + chr1_4:13627696-13627715 None:intergenic 45.0%
! ATTAGCAGAAGCACACAGAC+AGG - chr1_4:13627727-13627746 Msa0151510:CDS 45.0%
AAGTCAGCAGAGAAAGCAAC+AGG + chr1_4:13628084-13628103 None:intergenic 45.0%
! ATTGGGATCTGGAATAGGGA+AGG + chr1_4:13628257-13628276 None:intergenic 45.0%
TTCCCTATTCCAGATCCCAA+TGG - chr1_4:13628256-13628275 Msa0151510:intron 45.0%
CGATGAATACTAACCGTGGT+AGG + chr1_4:13628411-13628430 None:intergenic 45.0%
GTTCCGATGAATACTAACCG+TGG + chr1_4:13628415-13628434 None:intergenic 45.0%
CAGCCTGATATCCAACCATT+AGG + chr1_4:13628544-13628563 None:intergenic 45.0%
CTAATGGTTGGATATCAGGC+TGG - chr1_4:13628542-13628561 Msa0151510:intron 45.0%
AAGAAGGAAGTGATGCTGCT+GGG + chr1_4:13628690-13628709 None:intergenic 45.0%
AAAGAAGGAAGTGATGCTGC+TGG + chr1_4:13628691-13628710 None:intergenic 45.0%
CCAGAAGGAGGTAGTAAAGA+AGG + chr1_4:13628706-13628725 None:intergenic 45.0%
CCTTCTTTACTACCTCCTTC+TGG - chr1_4:13628703-13628722 Msa0151510:CDS 45.0%
TGGATTTATAGTCCATGCCG+AGG - chr1_4:13628723-13628742 Msa0151510:CDS 45.0%
ATGGAACTTCCGGTTGAACA+CGG - chr1_4:13628884-13628903 Msa0151510:intron 45.0%
! CTTCGACATTTGCTAAGGGA+TGG - chr1_4:13628957-13628976 Msa0151510:CDS 45.0%
TTACCTGGCATAAGCACTTG+TGG - chr1_4:13629195-13629214 Msa0151510:intron 45.0%
TACCTGGCATAAGCACTTGT+GGG - chr1_4:13629196-13629215 Msa0151510:intron 45.0%
TAAGCACTTGTGGGACTGTT+TGG - chr1_4:13629205-13629224 Msa0151510:intron 45.0%
CATCTGGTCTGCAAGGATAT+TGG - chr1_4:13629555-13629574 Msa0151510:CDS 45.0%
GGATCCCTATCCGATTGATA+TGG - chr1_4:13629577-13629596 Msa0151510:CDS 45.0%
AGGGTAAGCAGACATGTAGT+TGG + chr1_4:13629700-13629719 None:intergenic 45.0%
!!! ATGGAGGCATTTTGCAGAAC+AGG - chr1_4:13629805-13629824 Msa0151510:intron 45.0%
TAACCACTCGGACAAATCAC+AGG + chr1_4:13629995-13630014 None:intergenic 45.0%
! GTGCCTAATTGGTTCTTCGA+TGG - chr1_4:13630045-13630064 Msa0151510:intron 45.0%
CCAAGCTTGTCATAGGTAAC+TGG + chr1_4:13630392-13630411 None:intergenic 45.0%
CCAGTTACCTATGACAAGCT+TGG - chr1_4:13630389-13630408 Msa0151510:intron 45.0%
CCTTACTCCAAGCTTGTCAT+AGG + chr1_4:13630399-13630418 None:intergenic 45.0%
CCTATGACAAGCTTGGAGTA+AGG - chr1_4:13630396-13630415 Msa0151510:intron 45.0%
! GAGTAAGGTATAGGCTTTGG+AGG - chr1_4:13630411-13630430 Msa0151510:intron 45.0%
TTGGAGGGATGCATTGGAAA+AGG - chr1_4:13630427-13630446 Msa0151510:intron 45.0%
TGGAGGGATGCATTGGAAAA+GGG - chr1_4:13630428-13630447 Msa0151510:intron 45.0%
ATCAACCTAGTGAAGCTACC+CGG - chr1_4:13630607-13630626 Msa0151510:intron 45.0%
! AACAATCCCCTTTAAGGGTG+TGG + chr1_4:13630777-13630796 None:intergenic 45.0%
!!! ATCATTTTTTTTAAATAAAA+AGG + chr1_4:13628139-13628158 None:intergenic 5.0%
ACTCGACAAAGTTGGAGGTG+TGG - chr1_4:13626363-13626382 Msa0151510:intron 50.0%
CGCCGTTGCATGCTCAAATT+AGG - chr1_4:13626574-13626593 Msa0151510:intron 50.0%
GGAAGATGTAGACCCTACAC+AGG + chr1_4:13626840-13626859 None:intergenic 50.0%
! GCAGACAAGAAAAGTGCGTG+GGG - chr1_4:13626970-13626989 Msa0151510:CDS 50.0%
AAAGGATCTAGCTGGGTTGC+AGG - chr1_4:13627700-13627719 Msa0151510:CDS 50.0%
ACTTGGAGAAGAGGACGTCT+CGG + chr1_4:13627953-13627972 None:intergenic 50.0%
AGGGGTAAAGATGGCAAACC+TGG - chr1_4:13628308-13628327 Msa0151510:intron 50.0%
AGAGCATGTCCCCTTCATCT+TGG - chr1_4:13628356-13628375 Msa0151510:intron 50.0%
GGCTGGGAATATACGACAGA+CGG - chr1_4:13628559-13628578 Msa0151510:intron 50.0%
AGAAGGAAGTGATGCTGCTG+GGG + chr1_4:13628689-13628708 None:intergenic 50.0%
! CTAAGGGATGGAGTGTTCCT+AGG - chr1_4:13628969-13628988 Msa0151510:CDS 50.0%
CTGCTACCTTGGAGAACTCA+TGG + chr1_4:13629285-13629304 None:intergenic 50.0%
TATCCTTGCAGACCAGATGC+CGG + chr1_4:13629554-13629573 None:intergenic 50.0%
GGAGTTTCGACCACCTTGTA+TGG - chr1_4:13629598-13629617 Msa0151510:CDS 50.0%
ACCATTGGGATTTCGAAGCC+CGG - chr1_4:13629629-13629648 Msa0151510:CDS 50.0%
TCGAAGCCCGGGAAATTGAA+AGG - chr1_4:13629641-13629660 Msa0151510:CDS 50.0%
! AGCAGACATGTAGTTGGTGC+AGG + chr1_4:13629694-13629713 None:intergenic 50.0%
CACTCGGACAAATCACAGGT+TGG + chr1_4:13629991-13630010 None:intergenic 50.0%
! CAACCTGTGATTTGTCCGAG+TGG - chr1_4:13629989-13630008 Msa0151510:intron 50.0%
GAGGATCTACGGCTAGTAGT+TGG - chr1_4:13630323-13630342 Msa0151510:intron 50.0%
!! TAGGCTTTGGAGGGATGCAT+TGG - chr1_4:13630421-13630440 Msa0151510:intron 50.0%
TCAACCTAGTGAAGCTACCC+GGG - chr1_4:13630608-13630627 Msa0151510:intron 50.0%
! AAACCTGTGACTCGGGTGAG+TGG - chr1_4:13626270-13626289 Msa0151510:CDS 55.0%
AAACCACTCACCCGAGTCAC+AGG + chr1_4:13626276-13626295 None:intergenic 55.0%
GATTACGCAGTTGCGTGCGA+AGG + chr1_4:13626501-13626520 None:intergenic 55.0%
! CGTAATCCCTCGAGCCTTGT+GGG - chr1_4:13626514-13626533 Msa0151510:intron 55.0%
TTTGGTCCCACAAGGCTCGA+GGG + chr1_4:13626523-13626542 None:intergenic 55.0%
! TTTTGGTCCCACAAGGCTCG+AGG + chr1_4:13626524-13626543 None:intergenic 55.0%
! CGAGCCTTGTGGGACCAAAA+TGG - chr1_4:13626524-13626543 Msa0151510:intron 55.0%
CAGACATGCATGCACCTCGT+TGG - chr1_4:13627215-13627234 Msa0151510:intron 55.0%
CGTATCGCATGTCCCTACCA+CGG - chr1_4:13628395-13628414 Msa0151510:intron 55.0%
GGGATGATCTGGATTTGGCC+TGG - chr1_4:13628655-13628674 Msa0151510:CDS 55.0%
GAAGGAAGTGATGCTGCTGG+GGG + chr1_4:13628688-13628707 None:intergenic 55.0%
GTCCCACAAGTGCTTATGCC+AGG + chr1_4:13629201-13629220 None:intergenic 55.0%
CCATTGGGATTTCGAAGCCC+GGG - chr1_4:13629630-13629649 Msa0151510:CDS 55.0%
CATTCCCGGGTAGCTTCACT+AGG + chr1_4:13630615-13630634 None:intergenic 55.0%
GCGTAATCCCTCGAGCCTTG+TGG - chr1_4:13626513-13626532 Msa0151510:intron 60.0%
GGGCGTGCGCAAGATCCAAA+AGG + chr1_4:13628925-13628944 None:intergenic 60.0%
ACACCGGCATCTGGTCTGCA+AGG - chr1_4:13629548-13629567 Msa0151510:CDS 60.0%
CCCGGGCTTCGAAATCCCAA+TGG + chr1_4:13629633-13629652 None:intergenic 60.0%
GCTGCTGGGGGATCACTGCC+AGG + chr1_4:13628676-13628695 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 13625795 13630880 13625795 ID=Msa0151510;Name=Msa0151510
chr1_4 mRNA 13625795 13630880 13625795 ID=Msa0151510-mRNA-1;Parent=Msa0151510;Name=Msa0151510-mRNA-1;_AED=0.17;_eAED=0.17;_QI=82|0.85|0.87|1|1|1|8|393|454
chr1_4 exon 13625795 13626361 13625795 ID=Msa0151510-mRNA-1:exon:5452;Parent=Msa0151510-mRNA-1
chr1_4 exon 13626849 13627143 13626849 ID=Msa0151510-mRNA-1:exon:5451;Parent=Msa0151510-mRNA-1
chr1_4 exon 13627685 13627797 13627685 ID=Msa0151510-mRNA-1:exon:5450;Parent=Msa0151510-mRNA-1
chr1_4 exon 13627931 13628115 13627931 ID=Msa0151510-mRNA-1:exon:5449;Parent=Msa0151510-mRNA-1
chr1_4 exon 13628639 13628831 13628639 ID=Msa0151510-mRNA-1:exon:5448;Parent=Msa0151510-mRNA-1
chr1_4 exon 13628927 13629031 13628927 ID=Msa0151510-mRNA-1:exon:5447;Parent=Msa0151510-mRNA-1
chr1_4 exon 13629523 13629747 13629523 ID=Msa0151510-mRNA-1:exon:5446;Parent=Msa0151510-mRNA-1
chr1_4 exon 13630724 13630880 13630724 ID=Msa0151510-mRNA-1:exon:5445;Parent=Msa0151510-mRNA-1
chr1_4 five_prime_UTR 13630799 13630880 13630799 ID=Msa0151510-mRNA-1:five_prime_utr;Parent=Msa0151510-mRNA-1
chr1_4 CDS 13630724 13630798 13630724 ID=Msa0151510-mRNA-1:cds;Parent=Msa0151510-mRNA-1
chr1_4 CDS 13629523 13629747 13629523 ID=Msa0151510-mRNA-1:cds;Parent=Msa0151510-mRNA-1
chr1_4 CDS 13628927 13629031 13628927 ID=Msa0151510-mRNA-1:cds;Parent=Msa0151510-mRNA-1
chr1_4 CDS 13628639 13628831 13628639 ID=Msa0151510-mRNA-1:cds;Parent=Msa0151510-mRNA-1
chr1_4 CDS 13627931 13628115 13627931 ID=Msa0151510-mRNA-1:cds;Parent=Msa0151510-mRNA-1
chr1_4 CDS 13627685 13627797 13627685 ID=Msa0151510-mRNA-1:cds;Parent=Msa0151510-mRNA-1
chr1_4 CDS 13626849 13627143 13626849 ID=Msa0151510-mRNA-1:cds;Parent=Msa0151510-mRNA-1
chr1_4 CDS 13626188 13626361 13626188 ID=Msa0151510-mRNA-1:cds;Parent=Msa0151510-mRNA-1
chr1_4 three_prime_UTR 13625795 13626187 13625795 ID=Msa0151510-mRNA-1:three_prime_utr;Parent=Msa0151510-mRNA-1
Gene Sequence

>Msa0151510

ATGAATGCCATAGCTACTGCTTCTGCTTTATCTCTTCCTATCTTTTGTAGAACTTCCAAGCTTGACACCAAAAGGGGTTTGAAAGGTAAATTTGGAGTGTTTGCTGTGTTTGGAGAAGCAGACAAGAAAAGTGCGTGGGGTGCGATATTTGATGTACAGGATCCAAGATCTAAAGCGCCACTAAGTAAAGGAAAAGTTTTGGATGTATTTCAAGCCATAGAAGTAGCTAGGCATGATATTGAGTACTTAGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTCCTCCATGAAAAGGTGGTTGAAGTTCTTAATCCTCTAGCTCGTGAATTCAAGTCGATTGGCACCATGAAAAAGGATCTAGCTGGGTTGCAGGACGAATTAGCAGAAGCACACAGACAGGTCCATATATCTGAAGCAAGAGTTTCTACTGCTTTGGATAAACTCGCTTACATGGAAGAATTGGTAAATGACAGGCTATTGCAAGACAGAAGCACAGCTGAAGTTGCCGAGACGTCCTCTTCTCCAAGTACTTCTGATAAATCTGTACATACTGAAAGAAGAAGGAAGCCGAAGAAAAGCTTAAATGTATCAGGCTGGGAATATACGACAGACGGAAAATGCGAGAAAATGCCATCTACTCGAATGCTAAATGTAAAGATAAAGTCAATTCCATGTTTTGAGAAAGAAGGGATGATCTGGATTTGGCCTGGCAGTGATCCCCCAGCAGCATCACTTCCTTCTTTACTACCTCCTTCTGGATTTATAGTCCATGCCGAGATTGTCATGGAACTTCCGGTTGAACACGGATTACTTTTGGACAACCTTTTGGATCTTGCGCACGCCCCTTTTACTCATACTTCGACATTTGCTAAGGGATGGAGTGTTCCTAGCTTTGTGAATTTTTTGACACCGGCATCTGGTCTGCAAGGATATTGGGATCCCTATCCGATTGATATGGAGTTTCGACCACCTTGTATGGTTCTATCAACCATTGGGATTTCGAAGCCCGGGAAATTGAAAGGACAAAGCACCAAAGAATGTTCAACACACCTGCACCAACTACATGTCTGCTTACCCTCTTCAAAAGATAAAACAAGATTGCTATATAGAATGTCACTGGATTTCGCTCCCCTTCTTAAGCATATGCCTTTTATGGAACATCTATGGAGGCATTTTGCAGAACAGGTTTTAAATGAGGATCTACGGCTAGTAGTTGGCCAACAAGAGAGAATGAATAAAGGTGCAAATGTATGGAATGTACCAGTTACCTATGACAAGCTTGGAGTAAGGTATAGGCTTTGGAGGGATGCATTGGAAAAGGGAGATAAGCAACTACCCTTCAACACACACAATAATTAA

Protein sequence

>Msa0151510

MNAIATASALSLPIFCRTSKLDTKRGLKGKFGVFAVFGEADKKSAWGAIFDVQDPRSKAPLSKGKVLDVFQAIEVARHDIEYLDWRARQDVLTIMLLHEKVVEVLNPLAREFKSIGTMKKDLAGLQDELAEAHRQVHISEARVSTALDKLAYMEELVNDRLLQDRSTAEVAETSSSPSTSDKSVHTERRRKPKKSLNVSGWEYTTDGKCEKMPSTRMLNVKIKSIPCFEKEGMIWIWPGSDPPAASLPSLLPPSGFIVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLKGQSTKECSTHLHQLHVCLPSSKDKTRLLYRMSLDFAPLLKHMPFMEHLWRHFAEQVLNEDLRLVVGQQERMNKGANVWNVPVTYDKLGVRYRLWRDALEKGDKQLPFNTHNN*