AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0011440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011440 MtrunA17_Chr1g0159921 99.058 531 5 0 1 531 1 531 0.0 1099
Msa0011440 MtrunA17_Chr3g0136771 25.926 351 211 15 210 531 99 429 3.99e-26 112
Msa0011440 MtrunA17_Chr8g0378671 23.077 442 253 22 129 513 2 413 2.47e-14 75.9
Msa0011440 MtrunA17_Chr8g0378721 21.448 359 211 14 213 521 85 422 6.94e-14 74.3
Msa0011440 MtrunA17_Chr8g0378701 21.594 389 221 16 121 455 8 366 3.15e-11 65.5
Msa0011440 MtrunA17_Chr4g0027961 25.862 174 109 6 210 364 93 265 3.76e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011440 AT1G44446.1 75.376 532 124 2 3 527 4 535 0.0 833
Msa0011440 AT1G44446.2 75.417 480 111 2 3 475 4 483 0.0 743
Msa0011440 AT1G44446.4 78.060 433 95 0 95 527 1 433 0.0 718
Msa0011440 AT1G44446.3 72.324 383 99 2 3 378 4 386 0.0 558
Msa0011440 AT2G24820.1 25.000 336 209 12 213 520 88 408 3.61e-25 109
Msa0011440 AT3G44880.1 26.667 225 138 9 210 410 85 306 8.42e-12 68.2

Find 159 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACAACAATCCCCTTTA+AGG 0.138946 1_1:-17202810 None:intergenic
TGCTTTCTCTGCTGACTTAA+AGG 0.172252 1_1:+17200092 Msa0011440:CDS
ATCCTAATTTAAAGAATTTC+TGG 0.191900 1_1:+17200061 Msa0011440:CDS
AGGAACCATGGGTTATCTTT+AGG 0.213560 1_1:+17200293 Msa0011440:CDS
CAGGGTTTGAAAGGTAAATT+TGG 0.219218 1_1:+17198931 Msa0011440:intron
ACAGTGTTAAATCCAATTTA+TGG 0.235520 1_1:+17202752 Msa0011440:three_prime_UTR
GCTTTGTCCTTTCAATTTCC+CGG 0.258774 1_1:-17201668 None:intergenic
GGTTGAACACGGACTACTTT+TGG 0.260923 1_1:+17200914 Msa0011440:CDS
CTCCATAGATGTTCCATAAA+AGG 0.264680 1_1:-17201808 None:intergenic
CAGGTGTGTTGAACATTCTT+TGG 0.268435 1_1:-17201692 None:intergenic
TACCAGAAATTCTTTAAATT+AGG 0.270588 1_1:-17200063 None:intergenic
TGGTATAACCACACCCTTAA+AGG 0.278106 1_1:+17202796 Msa0011440:three_prime_UTR
CATCTGGTCTGCAAGGATAT+TGG 0.286825 1_1:+17201575 Msa0011440:CDS
CTTTATTCATTCTCTCTTGT+TGG 0.291005 1_1:-17202380 None:intergenic
CCTTCTTTACTACCTCCTTC+TGG 0.291205 1_1:+17200708 Msa0011440:CDS
CTTAGTGGCGCTTTAGATCT+TGG 0.291618 1_1:-17199021 None:intergenic
AAGATGGTGAAACCATAAAT+TGG 0.296753 1_1:-17202764 None:intergenic
GGAACCATGGGTTATCTTTA+GGG 0.299759 1_1:+17200294 Msa0011440:CDS
TATGGTTTCACCATCTTAGA+TGG 0.312209 1_1:+17202770 Msa0011440:three_prime_UTR
GTCGATTGGCACCATGAAAA+AGG 0.314224 1_1:+17199688 Msa0011440:CDS
AATGTCGAAGTATGAGTAAA+AGG 0.321362 1_1:-17200963 None:intergenic
AAACTCTTGCTTCAGATATA+TGG 0.329301 1_1:-17199852 None:intergenic
ATCTGGTCTGCAAGGATATT+GGG 0.329604 1_1:+17201576 Msa0011440:CDS
AGCAAGAGTTTCTACTGCTT+TGG 0.334343 1_1:+17199864 Msa0011440:CDS
ACATTTAGCATTCGAGTAGA+TGG 0.343874 1_1:-17200603 None:intergenic
AACCTTGCATTAGAACTTCA+TGG 0.356961 1_1:+17202608 Msa0011440:three_prime_UTR
AAAGGATCTAGCTGGGTTGC+AGG 0.360380 1_1:+17199706 Msa0011440:CDS
ACAGATTGTCATGGAACTTC+CGG 0.364114 1_1:+17200893 Msa0011440:intron
ACACTGTACACAAATTTAAG+AGG 0.365108 1_1:-17202736 None:intergenic
ACTAAGTAAAGGAAAAGTTT+TGG 0.365161 1_1:+17199038 Msa0011440:CDS
TTTGGAGTGTTTGCTGTGTT+TGG 0.368010 1_1:+17198949 Msa0011440:CDS
ATGCTTCTTAAGATCCAATA+AGG 0.383649 1_1:+17202554 Msa0011440:three_prime_UTR
AAGAAAAGCTTAAATGTATC+AGG 0.384915 1_1:+17200021 Msa0011440:CDS
ACTCGCTTACATGGAAGAAT+TGG 0.386034 1_1:+17199891 Msa0011440:CDS
CATACAACAATCCCCTTTAA+GGG 0.387303 1_1:-17202809 None:intergenic
ATCATGCCTAGCTACTTCTA+TGG 0.388459 1_1:-17199073 None:intergenic
AAGAAGGGATGATCTGGATT+TGG 0.390925 1_1:+17200655 Msa0011440:CDS
CCAAGCTTGTCATAGGTAAC+TGG 0.395981 1_1:-17202423 None:intergenic
GGATCCCTATCCGATTGATA+TGG 0.397893 1_1:+17201597 Msa0011440:CDS
GGTATAACCACACCCTTAAA+GGG 0.399225 1_1:+17202797 Msa0011440:three_prime_UTR
CTTCCAAGCTTGACACCAAA+AGG 0.403732 1_1:+17197931 Msa0011440:CDS
TGAATAAAGGTGCAAATGTA+TGG 0.404916 1_1:+17202394 Msa0011440:CDS
GGAGTTTCGACCACCTTGTA+TGG 0.406336 1_1:+17201618 Msa0011440:CDS
TTGAGAAAGAAGGGATGATC+TGG 0.411706 1_1:+17200649 Msa0011440:CDS
TTGGAGGGATGCATTGGAAA+AGG 0.412803 1_1:+17202461 Msa0011440:CDS
CTAAGGGATGGAGTGTTCCT+AGG 0.413929 1_1:+17200988 Msa0011440:CDS
CCTTACTCCAAGCTTGTCAT+AGG 0.414297 1_1:-17202430 None:intergenic
AGCAGTAGCTATGGCATTCA+TGG 0.421129 1_1:-17197877 None:intergenic
TTGGAGTAAGGTATAGGCTT+TGG 0.424370 1_1:+17202442 Msa0011440:CDS
AAGAAAGAGAGGTACCCTTT+TGG 0.427629 1_1:-17197946 None:intergenic
GTATGGTTCTATCAACCATT+GGG 0.429913 1_1:+17201635 Msa0011440:CDS
TTGGAAGTTCTACAAAAGAT+AGG 0.437166 1_1:-17197915 None:intergenic
TCATATCAACACAACATTCC+CGG 0.445027 1_1:-17202656 None:intergenic
TTAATTATTGTGTGTGTTGA+AGG 0.445378 1_1:-17202499 None:intergenic
ACAAGCTTGGAGTAAGGTAT+AGG 0.446291 1_1:+17202436 Msa0011440:CDS
AAGTCAGCAGAGAAAGCAAC+AGG 0.447177 1_1:-17200087 None:intergenic
AAAAGTAGTCCGTGTTCAAC+CGG 0.449428 1_1:-17200912 None:intergenic
CTTTGTCCTTTCAATTTCCC+GGG 0.450716 1_1:-17201667 None:intergenic
TTAGGATGGTATGACTGAAC+TGG 0.452128 1_1:-17200045 None:intergenic
GGGTGCGATATTTGATGTAC+AGG 0.456724 1_1:+17198996 Msa0011440:CDS
AGGGGTAAAGATGGCAAACC+TGG 0.457895 1_1:+17200313 Msa0011440:CDS
CCAGAAGGAGGTAGTAAAGA+AGG 0.468373 1_1:-17200708 None:intergenic
TAAAAGGCATATGCTTAAGA+AGG 0.468665 1_1:-17201792 None:intergenic
CAACAAGAGAGAATGAATAA+AGG 0.472000 1_1:+17202381 Msa0011440:CDS
ATGTCGAAGTATGAGTAAAA+GGG 0.472157 1_1:-17200962 None:intergenic
ATGATATTGAGTACTTAGAT+TGG 0.472398 1_1:+17199091 Msa0011440:CDS
TGTATGGTTCTATCAACCAT+TGG 0.476351 1_1:+17201634 Msa0011440:CDS
CATCATGCTCCTCCATGAAA+AGG 0.476387 1_1:+17199137 Msa0011440:CDS
TAAAGCAGAAGCAGTAGCTA+TGG 0.478061 1_1:-17197886 None:intergenic
TCATCTTGGCTCTGTAAATG+AGG 0.484207 1_1:+17200375 Msa0011440:CDS
ATCCCTTCTTTCTCAAAACA+TGG 0.488856 1_1:-17200642 None:intergenic
GGTTCCTCAAAACATTCCAT+TGG 0.490124 1_1:-17200277 None:intergenic
AACAATCCCCTTTAAGGGTG+TGG 0.490466 1_1:-17202804 None:intergenic
TAGGCTTTGGAGGGATGCAT+TGG 0.491835 1_1:+17202455 Msa0011440:CDS
GAGTAAGGTATAGGCTTTGG+AGG 0.496119 1_1:+17202445 Msa0011440:CDS
GTTATCTTTAGGGGTAAAGA+TGG 0.497489 1_1:+17200304 Msa0011440:CDS
GTTCCTCAAAACATTCCATT+GGG 0.498608 1_1:-17200276 None:intergenic
AGAGCATGTCCCCTTCATCT+TGG 0.499561 1_1:+17200361 Msa0011440:CDS
ACCATTGGGATTTCGAAGCC+CGG 0.501562 1_1:+17201649 Msa0011440:CDS
TTTGGATAAACTCGCTTACA+TGG 0.502971 1_1:+17199882 Msa0011440:CDS
TGGAGGGATGCATTGGAAAA+GGG 0.507380 1_1:+17202462 Msa0011440:CDS
TTCACCATCTTAGATGGTGG+TGG 0.507584 1_1:+17202776 Msa0011440:three_prime_UTR
AGAAATTCTTTAAATTAGGA+TGG 0.513147 1_1:-17200059 None:intergenic
CTATGAAAGTGATGAGAAGA+AGG 0.513839 1_1:-17197854 None:intergenic
ACAGATTTATCAGAAGTACT+TGG 0.516953 1_1:-17199973 None:intergenic
GATTGTAACTCAAACCAGTC+AGG 0.519297 1_1:-17202864 None:intergenic
AAACTCCATATCAATCGGAT+AGG 0.523237 1_1:-17201602 None:intergenic
TCATACTTCGACATTTGCTA+AGG 0.523457 1_1:+17200971 Msa0011440:CDS
ATCAACCTAGTGAAGCTACC+CGG 0.523575 1_1:+17202637 Msa0011440:three_prime_UTR
AGCAGACATGTAGTTGGTGC+AGG 0.524754 1_1:-17201711 None:intergenic
ATTGCTATATAGAATGTCAC+TGG 0.528652 1_1:+17201759 Msa0011440:CDS
GGTCGAAACTCCATATCAAT+CGG 0.530169 1_1:-17201607 None:intergenic
GTTGATTAAGAATTCCTGAC+TGG 0.530223 1_1:+17202850 Msa0011440:three_prime_UTR
AAGAAGGAAGTGATGCTGCT+GGG 0.530413 1_1:-17200692 None:intergenic
TTTCACAAAACAGATTGTCA+TGG 0.531019 1_1:+17200884 Msa0011440:intron
TCTAAAGCGCCACTAAGTAA+AGG 0.531979 1_1:+17199027 Msa0011440:CDS
CATTTACAGAGCCAAGATGA+AGG 0.535455 1_1:-17200372 None:intergenic
TCGAAGCCCGGGAAATTGAA+AGG 0.535602 1_1:+17201661 Msa0011440:CDS
CATTCCCGGGTAGCTTCACT+AGG 0.537575 1_1:-17202642 None:intergenic
AGTACTTAGATTGGCGAGCT+CGG 0.538321 1_1:+17199100 Msa0011440:CDS
AAAGAAGGAAGTGATGCTGC+TGG 0.539768 1_1:-17200693 None:intergenic
CCTATGACAAGCTTGGAGTA+AGG 0.541938 1_1:+17202430 Msa0011440:CDS
GGTTTCACCATCTTAGATGG+TGG 0.543297 1_1:+17202773 Msa0011440:three_prime_UTR
AGGGTAAGCAGACATGTAGT+TGG 0.544078 1_1:-17201717 None:intergenic
CCATTGGGATTTCGAAGCCC+GGG 0.544164 1_1:+17201650 Msa0011440:CDS
TGGAAGAATTGGTAAATGAC+AGG 0.544909 1_1:+17199902 Msa0011440:CDS
GGGATGATCTGGATTTGGCC+TGG 0.548326 1_1:+17200660 Msa0011440:CDS
CATACTTCGACATTTGCTAA+GGG 0.548563 1_1:+17200972 Msa0011440:CDS
CATATCAACACAACATTCCC+GGG 0.548627 1_1:-17202655 None:intergenic
AACTCCATATCAATCGGATA+GGG 0.548896 1_1:-17201601 None:intergenic
CCCGGGCTTCGAAATCCCAA+TGG 0.553272 1_1:-17201650 None:intergenic
CTTCGACATTTGCTAAGGGA+TGG 0.553640 1_1:+17200976 Msa0011440:CDS
AAAAGGCATATGCTTAAGAA+GGG 0.554581 1_1:-17201791 None:intergenic
ATCAGAAGTACTTGGAGAAG+AGG 0.554772 1_1:-17199965 None:intergenic
CTGTACATACTGAAAGAAGA+AGG 0.555644 1_1:+17199992 Msa0011440:CDS
CCAGTTACCTATGACAAGCT+TGG 0.556416 1_1:+17202423 Msa0011440:CDS
GAGGATCTACGGCTAGTAGT+TGG 0.556957 1_1:+17202357 Msa0011440:CDS
GCTCGTGAATTCAAGTCGAT+TGG 0.558329 1_1:+17199674 Msa0011440:CDS
ATTAGCAGAAGCACACAGAC+AGG 0.563331 1_1:+17199733 Msa0011440:CDS
TGACTTAAAGGATGATTCCA+TGG 0.565498 1_1:+17200104 Msa0011440:CDS
TATACCACCACCATCTAAGA+TGG 0.570781 1_1:-17202780 None:intergenic
ATTTACAGAGCCAAGATGAA+GGG 0.571447 1_1:-17200371 None:intergenic
AGAAGGAAGTGATGCTGCTG+GGG 0.573018 1_1:-17200691 None:intergenic
GATGAATACTAACCGTGGTA+AGG 0.574179 1_1:-17200412 None:intergenic
GGCTGGGAATATACGACAGA+CGG 0.577816 1_1:+17200564 Msa0011440:intron
TTCCAAGCTTGACACCAAAA+GGG 0.583881 1_1:+17197932 Msa0011440:CDS
AGCAGACAAGAAAAGTGCGT+GGG 0.586221 1_1:+17198975 Msa0011440:CDS
TTCAAGCCATAGAAGTAGCT+AGG 0.586372 1_1:+17199067 Msa0011440:CDS
TATCCTTGCAGACCAGATGC+CGG 0.588286 1_1:-17201571 None:intergenic
ACTTATTAAATACCTCGGCA+TGG 0.591232 1_1:-17200740 None:intergenic
TTCCCTATTCCAGATCCCAA+TGG 0.592203 1_1:+17200261 Msa0011440:intron
CATCTTGGCTCTGTAAATGA+GGG 0.592271 1_1:+17200376 Msa0011440:CDS
AGCCATGAAGTTCTAATGCA+AGG 0.595362 1_1:-17202610 None:intergenic
TCAACCTAGTGAAGCTACCC+GGG 0.600321 1_1:+17202638 Msa0011440:three_prime_UTR
GGGCGTGCGCAAGATCCAAA+AGG 0.603628 1_1:-17200941 None:intergenic
GACTTGAATTCACGAGCTAG+AGG 0.604846 1_1:-17199668 None:intergenic
ACACCGGCATCTGGTCTGCA+AGG 0.613320 1_1:+17201568 Msa0011440:CDS
TAATTATTGTGTGTGTTGAA+GGG 0.617559 1_1:-17202498 None:intergenic
TGTTCCTTTGTAGAATGACA+AGG 0.617585 1_1:+17202682 Msa0011440:three_prime_UTR
TTACCCCTAAAGATAACCCA+TGG 0.624924 1_1:-17200298 None:intergenic
TGTCGAAGTATGAGTAAAAG+GGG 0.625361 1_1:-17200961 None:intergenic
ACTTGGAGAAGAGGACGTCT+CGG 0.627193 1_1:-17199956 None:intergenic
TTTACAGAGCCAAGATGAAG+GGG 0.628748 1_1:-17200370 None:intergenic
ATGGAACTTCCGGTTGAACA+CGG 0.630275 1_1:+17200903 Msa0011440:CDS
GAACCATGGGTTATCTTTAG+GGG 0.632156 1_1:+17200295 Msa0011440:CDS
ATGGTTGATAGAACCATACA+AGG 0.639943 1_1:-17201631 None:intergenic
AGTAAGGTATAGGCTTTGGA+GGG 0.643282 1_1:+17202446 Msa0011440:CDS
AAAGGCATATGCTTAAGAAG+GGG 0.645865 1_1:-17201790 None:intergenic
TGGATTTATAGTCCATGCCG+AGG 0.645907 1_1:+17200728 Msa0011440:CDS
GCATGGACTATAAATCCAGA+AGG 0.652893 1_1:-17200723 None:intergenic
GTATAACCACACCCTTAAAG+GGG 0.658662 1_1:+17202798 Msa0011440:three_prime_UTR
GAAGGAAGTGATGCTGCTGG+GGG 0.661858 1_1:-17200690 None:intergenic
ACAACCTTGTCATTCTACAA+AGG 0.662518 1_1:-17202686 None:intergenic
TGGACTATAAATCCAGAAGG+AGG 0.679360 1_1:-17200720 None:intergenic
AAGCAGACAAGAAAAGTGCG+TGG 0.679985 1_1:+17198974 Msa0011440:CDS
AATGACAAGGTTGTACTCTG+AGG 0.680999 1_1:+17202695 Msa0011440:three_prime_UTR
GCAGACAAGAAAAGTGCGTG+GGG 0.696719 1_1:+17198976 Msa0011440:CDS
GTTGATAGAACCATACAAGG+TGG 0.758266 1_1:-17201628 None:intergenic
CGTATCGCATGTCCTTACCA+CGG 0.758974 1_1:+17200400 Msa0011440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAACAAAAAAAAAAAAAA+AGG - chr1_1:17197995-17198014 None:intergenic 10.0%
!! AATTTATCTAAATTTAATAG+CGG - chr1_1:17198456-17198475 None:intergenic 10.0%
!! ATTAAGTTTAAATTTAACAA+TGG - chr1_1:17198781-17198800 None:intergenic 10.0%
!! TATAAATTTAGTCACTATTT+AGG + chr1_1:17198203-17198222 Msa0011440:intron 15.0%
!! TTATGAAATGATAGATTTAT+AGG + chr1_1:17201498-17201517 Msa0011440:intron 15.0%
!!! TATCATACATTGTTTCTTTT+AGG + chr1_1:17198408-17198427 Msa0011440:intron 20.0%
!!! GTTTCTTTTAGGTTTTTAAT+AGG + chr1_1:17198419-17198438 Msa0011440:intron 20.0%
!!! TTTATGTTTTTTGTGTAAAC+TGG + chr1_1:17198478-17198497 Msa0011440:intron 20.0%
!!! TTCTTTAGCTTATACTTTTT+TGG + chr1_1:17198896-17198915 Msa0011440:intron 20.0%
!!! TCTTTAGCTTATACTTTTTT+GGG + chr1_1:17198897-17198916 Msa0011440:intron 20.0%
!! TCTTAATAATCAGAAACTAT+TGG + chr1_1:17199622-17199641 Msa0011440:intron 20.0%
!! AGAAATTCTTTAAATTAGGA+TGG - chr1_1:17200062-17200081 None:intergenic 20.0%
!! ATCCTAATTTAAAGAATTTC+TGG + chr1_1:17200061-17200080 Msa0011440:CDS 20.0%
!! TACCAGAAATTCTTTAAATT+AGG - chr1_1:17200066-17200085 None:intergenic 20.0%
!! ACTATACTTATTAAATACCT+CGG - chr1_1:17200748-17200767 None:intergenic 20.0%
!! AAAAAAGAAGATAAAAGTCA+TGG + chr1_1:17200844-17200863 Msa0011440:intron 20.0%
!! TTGAATCATATCACTTATAA+GGG - chr1_1:17201029-17201048 None:intergenic 20.0%
!! ATTGAATCATATCACTTATA+AGG - chr1_1:17201030-17201049 None:intergenic 20.0%
!! TTCATGTATCATAATAACTT+AGG + chr1_1:17201162-17201181 Msa0011440:intron 20.0%
!! TCATGTATCATAATAACTTA+GGG + chr1_1:17201163-17201182 Msa0011440:intron 20.0%
!! TCAAATAAGCAAATTAAAAC+AGG - chr1_1:17201189-17201208 None:intergenic 20.0%
!! TGTTTAAATTGATGAGTATA+TGG + chr1_1:17201981-17202000 Msa0011440:intron 20.0%
!!! ATTTTTCTGAAATCAAGTTA+TGG - chr1_1:17202168-17202187 None:intergenic 20.0%
!! AAAGAGAAAAATATCCTTAT+TGG - chr1_1:17202571-17202590 None:intergenic 20.0%
!! TTCAAACTCGAATTCTAAAA+TGG - chr1_1:17198345-17198364 None:intergenic 25.0%
!! AATATTATGTCCTTTTACTC+TGG + chr1_1:17198650-17198669 Msa0011440:intron 25.0%
! AAACCATACTCTTTCATATA+TGG - chr1_1:17198872-17198891 None:intergenic 25.0%
!! AAAACTTTTCCTTTACTTAG+TGG - chr1_1:17199039-17199058 None:intergenic 25.0%
!! ACTAAGTAAAGGAAAAGTTT+TGG + chr1_1:17199038-17199057 Msa0011440:CDS 25.0%
! ATGATATTGAGTACTTAGAT+TGG + chr1_1:17199091-17199110 Msa0011440:CDS 25.0%
! TCAATTCAAACAAACATAGA+TGG - chr1_1:17199289-17199308 None:intergenic 25.0%
! TGATTATTAAGATAAGCACA+TGG - chr1_1:17199614-17199633 None:intergenic 25.0%
! ATAAGTTAATGAATTACTGC+AGG + chr1_1:17199828-17199847 Msa0011440:intron 25.0%
!! GATACATTTAAGCTTTTCTT+CGG - chr1_1:17200021-17200040 None:intergenic 25.0%
! AAGAAAAGCTTAAATGTATC+AGG + chr1_1:17200021-17200040 Msa0011440:CDS 25.0%
! CAAAAAATGGTATATTTGCA+AGG - chr1_1:17200187-17200206 None:intergenic 25.0%
! AAAGGACTAAAAGCAAAAAA+TGG - chr1_1:17200200-17200219 None:intergenic 25.0%
! AAGACGACAATATCTTTAAA+AGG - chr1_1:17200218-17200237 None:intergenic 25.0%
! TCAATATGCGAAAATGAAAT+TGG + chr1_1:17201045-17201064 Msa0011440:intron 25.0%
! AATAAGCAGAAAACAACTTA+TGG - chr1_1:17201281-17201300 None:intergenic 25.0%
!!! CTTGTTTTATCTTTTGAAGA+GGG - chr1_1:17201739-17201758 None:intergenic 25.0%
!!! TCTTGTTTTATCTTTTGAAG+AGG - chr1_1:17201740-17201759 None:intergenic 25.0%
! TTGTGAATTGACATCAAAAA+GGG - chr1_1:17201865-17201884 None:intergenic 25.0%
! ATTGTGAATTGACATCAAAA+AGG - chr1_1:17201866-17201885 None:intergenic 25.0%
!! CTTCAAAAGGAACAAATTTT+GGG + chr1_1:17201931-17201950 Msa0011440:intron 25.0%
!!! GAACAAATTTTGGGTATTTA+TGG + chr1_1:17201940-17201959 Msa0011440:intron 25.0%
! GATTATTAACTACTCAACAT+TGG + chr1_1:17202103-17202122 Msa0011440:intron 25.0%
!!! ATCTTTCTTGTGTTTGTTTT+TGG + chr1_1:17202250-17202269 Msa0011440:intron 25.0%
! TGTTGATATTTCCATACTTT+AGG + chr1_1:17202326-17202345 Msa0011440:intron 25.0%
!! CTCATTTAAAACCTAAAGTA+TGG - chr1_1:17202340-17202359 None:intergenic 25.0%
!!! CATACTTTAGGTTTTAAATG+AGG + chr1_1:17202338-17202357 Msa0011440:intron 25.0%
! TAATTATTGTGTGTGTTGAA+GGG - chr1_1:17202501-17202520 None:intergenic 25.0%
! TTAATTATTGTGTGTGTTGA+AGG - chr1_1:17202502-17202521 None:intergenic 25.0%
! ACAGTGTTAAATCCAATTTA+TGG + chr1_1:17202752-17202771 Msa0011440:three_prime_UTR 25.0%
TTGGAAGTTCTACAAAAGAT+AGG - chr1_1:17197918-17197937 None:intergenic 30.0%
!!! GATTAGTTGCTTGTTTTGTA+AGG + chr1_1:17198017-17198036 Msa0011440:intron 30.0%
!! GTAAACTTAGCTTTTAGTCT+TGG + chr1_1:17198115-17198134 Msa0011440:intron 30.0%
!! TGACTTTAAGTTGACTTGTA+AGG + chr1_1:17198151-17198170 Msa0011440:intron 30.0%
!! TTAAGTTGACTTGTAAGGTA+AGG + chr1_1:17198156-17198175 Msa0011440:intron 30.0%
!! TAAGTTGACTTGTAAGGTAA+GGG + chr1_1:17198157-17198176 Msa0011440:intron 30.0%
! CAATTGATCTAAGATAGGTT+CGG + chr1_1:17198316-17198335 Msa0011440:intron 30.0%
TCTAAATTTAATAGCGGCAT+AGG - chr1_1:17198450-17198469 None:intergenic 30.0%
GAACTTAGAGAAACGAATTT+CGG + chr1_1:17198607-17198626 Msa0011440:intron 30.0%
! TAAAAGTACACCAGAGTAAA+AGG - chr1_1:17198663-17198682 None:intergenic 30.0%
ATACTCTTTCATATATGGAC+CGG - chr1_1:17198867-17198886 None:intergenic 30.0%
! AATTAGCTGAAACCTTTTCA+TGG - chr1_1:17199152-17199171 None:intergenic 30.0%
! GGTACTATATAACTTTTGAC+TGG + chr1_1:17199260-17199279 Msa0011440:intron 30.0%
GACATATTTGAGCTTATCTA+TGG + chr1_1:17199307-17199326 Msa0011440:intron 30.0%
CTTATTTCCATAAACTCTCT+AGG + chr1_1:17199403-17199422 Msa0011440:intron 30.0%
ATATAGGGAGAATACAACAA+CGG - chr1_1:17199573-17199592 None:intergenic 30.0%
GATGCTTTATAGCACATATA+GGG - chr1_1:17199588-17199607 None:intergenic 30.0%
TATTAAGATAAGCACATGGT+GGG - chr1_1:17199610-17199629 None:intergenic 30.0%
TTATTAAGATAAGCACATGG+TGG - chr1_1:17199611-17199630 None:intergenic 30.0%
TAATCAGAAACTATTGGTGT+AGG + chr1_1:17199628-17199647 Msa0011440:intron 30.0%
AAACTCTTGCTTCAGATATA+TGG - chr1_1:17199855-17199874 None:intergenic 30.0%
!! ACAGATTTATCAGAAGTACT+TGG - chr1_1:17199976-17199995 None:intergenic 30.0%
TCTCAGAGAAATAAATCTGT+TGG - chr1_1:17200511-17200530 None:intergenic 30.0%
CAGAAACTGAAATTTCCTAA+TGG + chr1_1:17200531-17200550 Msa0011440:intron 30.0%
AACTGAAATTTCCTAATGGT+TGG + chr1_1:17200535-17200554 Msa0011440:intron 30.0%
!!! ATTCCATGTTTTGAGAAAGA+AGG + chr1_1:17200639-17200658 Msa0011440:CDS 30.0%
!!! TTCCATGTTTTGAGAAAGAA+GGG + chr1_1:17200640-17200659 Msa0011440:CDS 30.0%
TAAGTATAGTCTGTCCTAAT+AGG + chr1_1:17200758-17200777 Msa0011440:intron 30.0%
! TCTGTTTTGTGAAAAGATAC+CGG - chr1_1:17200878-17200897 None:intergenic 30.0%
TTTCACAAAACAGATTGTCA+TGG + chr1_1:17200884-17200903 Msa0011440:intron 30.0%
ATGTCGAAGTATGAGTAAAA+GGG - chr1_1:17200965-17200984 None:intergenic 30.0%
AATGTCGAAGTATGAGTAAA+AGG - chr1_1:17200966-17200985 None:intergenic 30.0%
! GAAGTCTTTTTCTTTTGACA+AGG + chr1_1:17201107-17201126 Msa0011440:intron 30.0%
CTTATTTGAGCTTATTTACC+TGG + chr1_1:17201200-17201219 Msa0011440:intron 30.0%
! ATGATATGCTTTTATGATGC+AGG + chr1_1:17201393-17201412 Msa0011440:intron 30.0%
!!! CTTTGTGAATTTTTTGACAC+CGG + chr1_1:17201552-17201571 Msa0011440:CDS 30.0%
ATTGCTATATAGAATGTCAC+TGG + chr1_1:17201759-17201778 Msa0011440:CDS 30.0%
! AAAAGGCATATGCTTAAGAA+GGG - chr1_1:17201794-17201813 None:intergenic 30.0%
! TAAAAGGCATATGCTTAAGA+AGG - chr1_1:17201795-17201814 None:intergenic 30.0%
! TCTTAAGCATATGCCTTTTA+TGG + chr1_1:17201795-17201814 Msa0011440:CDS 30.0%
!!! TTTTGAAGCGTAACTCATTT+TGG - chr1_1:17201919-17201938 None:intergenic 30.0%
AAAATGAGTTACGCTTCAAA+AGG + chr1_1:17201918-17201937 Msa0011440:intron 30.0%
! GCTTCAAAAGGAACAAATTT+TGG + chr1_1:17201930-17201949 Msa0011440:intron 30.0%
! TATCTGATTTTCTAACCACT+CGG - chr1_1:17202027-17202046 None:intergenic 30.0%
AATCAGATACCATAAGAAAG+TGG + chr1_1:17202038-17202057 Msa0011440:intron 30.0%
ATACTCTTACCACTTTCTTA+TGG - chr1_1:17202050-17202069 None:intergenic 30.0%
ATTCATCATATGTGCCTAAT+TGG + chr1_1:17202068-17202087 Msa0011440:intron 30.0%
GCACATATGATGAATAGTTA+TGG - chr1_1:17202146-17202165 None:intergenic 30.0%
!!! AGGTTTTAAATGAGGATCTA+CGG + chr1_1:17202346-17202365 Msa0011440:intron 30.0%
CTTTATTCATTCTCTCTTGT+TGG - chr1_1:17202383-17202402 None:intergenic 30.0%
CAACAAGAGAGAATGAATAA+AGG + chr1_1:17202381-17202400 Msa0011440:CDS 30.0%
! TGAATAAAGGTGCAAATGTA+TGG + chr1_1:17202394-17202413 Msa0011440:CDS 30.0%
ATGCTTCTTAAGATCCAATA+AGG + chr1_1:17202554-17202573 Msa0011440:three_prime_UTR 30.0%
ACACTGTACACAAATTTAAG+AGG - chr1_1:17202739-17202758 None:intergenic 30.0%
AAGATGGTGAAACCATAAAT+TGG - chr1_1:17202767-17202786 None:intergenic 30.0%
CTATGAAAGTGATGAGAAGA+AGG - chr1_1:17197857-17197876 None:intergenic 35.0%
AGAAGAAGAAGAAGAAAGAG+AGG - chr1_1:17197960-17197979 None:intergenic 35.0%
GTGAGTGGTTTAATAATAGG+TGG + chr1_1:17198291-17198310 Msa0011440:intron 35.0%
! TGGCTCAATTGATCTAAGAT+AGG + chr1_1:17198311-17198330 Msa0011440:intron 35.0%
TGAACATAACTCGACAAAGT+TGG + chr1_1:17198361-17198380 Msa0011440:intron 35.0%
! TGACAACTTGTCATCCATTT+TGG - chr1_1:17198547-17198566 None:intergenic 35.0%
AACACTTCGTACAAAACTGT+AGG - chr1_1:17198735-17198754 None:intergenic 35.0%
AAGAAAGTTTCTCCTGTGTA+GGG + chr1_1:17198831-17198850 Msa0011440:intron 35.0%
GGTCCATATATGAAAGAGTA+TGG + chr1_1:17198866-17198885 Msa0011440:intron 35.0%
!!! GCTTATACTTTTTTGGGTTG+TGG + chr1_1:17198903-17198922 Msa0011440:intron 35.0%
!!! TTTTTGGGTTGTGGATTTTC+AGG + chr1_1:17198912-17198931 Msa0011440:intron 35.0%
!!! TTTTGGGTTGTGGATTTTCA+GGG + chr1_1:17198913-17198932 Msa0011440:intron 35.0%
CAGGGTTTGAAAGGTAAATT+TGG + chr1_1:17198931-17198950 Msa0011440:intron 35.0%
GTTGGATCAAATTAGAGACT+TGG + chr1_1:17199239-17199258 Msa0011440:intron 35.0%
AATAAGCTGAAAGCAGCTTA+TGG - chr1_1:17199389-17199408 None:intergenic 35.0%
AAGCTATCCTAGAGAGTTTA+TGG - chr1_1:17199413-17199432 None:intergenic 35.0%
AAGCTGTTTATCCAAACAAG+TGG + chr1_1:17199535-17199554 Msa0011440:intron 35.0%
AGCTGTTTATCCAAACAAGT+GGG + chr1_1:17199536-17199555 Msa0011440:intron 35.0%
CAAACTTTATCCCACTTGTT+TGG - chr1_1:17199549-17199568 None:intergenic 35.0%
CAAACAAGTGGGATAAAGTT+TGG + chr1_1:17199547-17199566 Msa0011440:intron 35.0%
GGATGCTTTATAGCACATAT+AGG - chr1_1:17199589-17199608 None:intergenic 35.0%
! CAAATCCGAATTTGAAGCTT+TGG - chr1_1:17199794-17199813 None:intergenic 35.0%
TTTGGATAAACTCGCTTACA+TGG + chr1_1:17199882-17199901 Msa0011440:CDS 35.0%
TGGAAGAATTGGTAAATGAC+AGG + chr1_1:17199902-17199921 Msa0011440:CDS 35.0%
CTGTACATACTGAAAGAAGA+AGG + chr1_1:17199992-17200011 Msa0011440:CDS 35.0%
TGACTTAAAGGATGATTCCA+TGG + chr1_1:17200104-17200123 Msa0011440:CDS 35.0%
GTTCCTCAAAACATTCCATT+GGG - chr1_1:17200279-17200298 None:intergenic 35.0%
! GTTATCTTTAGGGGTAAAGA+TGG + chr1_1:17200304-17200323 Msa0011440:CDS 35.0%
!! CATGTATTTTGAACACATCC+AGG - chr1_1:17200334-17200353 None:intergenic 35.0%
ATTTACAGAGCCAAGATGAA+GGG - chr1_1:17200374-17200393 None:intergenic 35.0%
TTACCACGGTTAGTATTCAT+CGG + chr1_1:17200414-17200433 Msa0011440:intron 35.0%
TAGTAGTGAGTTACATGACA+TGG + chr1_1:17200485-17200504 Msa0011440:intron 35.0%
TTTCCTAATGGTTGGATATC+AGG + chr1_1:17200543-17200562 Msa0011440:intron 35.0%
ACATTTAGCATTCGAGTAGA+TGG - chr1_1:17200606-17200625 None:intergenic 35.0%
ATCCCTTCTTTCTCAAAACA+TGG - chr1_1:17200645-17200664 None:intergenic 35.0%
ACTTATTAAATACCTCGGCA+TGG - chr1_1:17200743-17200762 None:intergenic 35.0%
CCTAGCTTAGAATACCTATT+AGG - chr1_1:17200775-17200794 None:intergenic 35.0%
CCTAATAGGTATTCTAAGCT+AGG + chr1_1:17200772-17200791 Msa0011440:intron 35.0%
AAAAGTCATGGTTTCTTACC+CGG + chr1_1:17200856-17200875 Msa0011440:intron 35.0%
! CTGTTTTGTGAAAAGATACC+GGG - chr1_1:17200877-17200896 None:intergenic 35.0%
!! ACTACTTTTGGACAACCTTT+TGG + chr1_1:17200926-17200945 Msa0011440:CDS 35.0%
TGTCGAAGTATGAGTAAAAG+GGG - chr1_1:17200964-17200983 None:intergenic 35.0%
! TCATACTTCGACATTTGCTA+AGG + chr1_1:17200971-17200990 Msa0011440:CDS 35.0%
! CATACTTCGACATTTGCTAA+GGG + chr1_1:17200972-17200991 Msa0011440:CDS 35.0%
GGTATAAACGAAACAAACCT+AGG - chr1_1:17201008-17201027 None:intergenic 35.0%
TTATTTCCATGAGTTCTCCA+AGG + chr1_1:17201296-17201315 Msa0011440:intron 35.0%
ATTTACATAAGCTGCTACCT+TGG - chr1_1:17201316-17201335 None:intergenic 35.0%
GCGCAAATCAGAAATATCTA+AGG - chr1_1:17201439-17201458 None:intergenic 35.0%
AACTCCATATCAATCGGATA+GGG - chr1_1:17201604-17201623 None:intergenic 35.0%
AAACTCCATATCAATCGGAT+AGG - chr1_1:17201605-17201624 None:intergenic 35.0%
!! ATGGTTGATAGAACCATACA+AGG - chr1_1:17201634-17201653 None:intergenic 35.0%
! TGTATGGTTCTATCAACCAT+TGG + chr1_1:17201634-17201653 Msa0011440:CDS 35.0%
! GTATGGTTCTATCAACCATT+GGG + chr1_1:17201635-17201654 Msa0011440:CDS 35.0%
! AAAGGCATATGCTTAAGAAG+GGG - chr1_1:17201793-17201812 None:intergenic 35.0%
! TGCCTTTTATGGAACATCTA+TGG + chr1_1:17201806-17201825 Msa0011440:CDS 35.0%
CTCCATAGATGTTCCATAAA+AGG - chr1_1:17201811-17201830 None:intergenic 35.0%
! CTTTTATGGAACATCTATGG+AGG + chr1_1:17201809-17201828 Msa0011440:CDS 35.0%
CAATTGATTGTGTTTGAGCA+AGG + chr1_1:17201882-17201901 Msa0011440:intron 35.0%
GTGTTTGAGCAAGGAATAAA+AGG + chr1_1:17201891-17201910 Msa0011440:intron 35.0%
AACCTTGCATTAGAACTTCA+TGG + chr1_1:17202608-17202627 Msa0011440:three_prime_UTR 35.0%
TCATATCAACACAACATTCC+CGG - chr1_1:17202659-17202678 None:intergenic 35.0%
TGTTCCTTTGTAGAATGACA+AGG + chr1_1:17202682-17202701 Msa0011440:three_prime_UTR 35.0%
ACAACCTTGTCATTCTACAA+AGG - chr1_1:17202689-17202708 None:intergenic 35.0%
TATGGTTTCACCATCTTAGA+TGG + chr1_1:17202770-17202789 Msa0011440:three_prime_UTR 35.0%
CATACAACAATCCCCTTTAA+GGG - chr1_1:17202812-17202831 None:intergenic 35.0%
TCATACAACAATCCCCTTTA+AGG - chr1_1:17202813-17202832 None:intergenic 35.0%
GTTGATTAAGAATTCCTGAC+TGG + chr1_1:17202850-17202869 Msa0011440:three_prime_UTR 35.0%
TAAAGCAGAAGCAGTAGCTA+TGG - chr1_1:17197889-17197908 None:intergenic 40.0%
TTCCAAGCTTGACACCAAAA+GGG + chr1_1:17197932-17197951 Msa0011440:CDS 40.0%
!!! AAGAAAGAGAGGTACCCTTT+TGG - chr1_1:17197949-17197968 None:intergenic 40.0%
!!! GTCACAGGTTTTGAGATTGA+GGG - chr1_1:17198267-17198286 None:intergenic 40.0%
!!! AGTCACAGGTTTTGAGATTG+AGG - chr1_1:17198268-17198287 None:intergenic 40.0%
CAATCTCAAAACCTGTGACT+CGG + chr1_1:17198268-17198287 Msa0011440:intron 40.0%
AATCTCAAAACCTGTGACTC+GGG + chr1_1:17198269-17198288 Msa0011440:intron 40.0%
CGGGTGAGTGGTTTAATAAT+AGG + chr1_1:17198288-17198307 Msa0011440:intron 40.0%
ACATAACTCGACAAAGTTGG+AGG + chr1_1:17198364-17198383 Msa0011440:intron 40.0%
ACCCTAATTTGAGCATGCAA+CGG - chr1_1:17198585-17198604 None:intergenic 40.0%
GAAGAAAGTTTCTCCTGTGT+AGG + chr1_1:17198830-17198849 Msa0011440:intron 40.0%
!! GTGGATTTTCAGGGTTTGAA+AGG + chr1_1:17198922-17198941 Msa0011440:intron 40.0%
!! TTTGGAGTGTTTGCTGTGTT+TGG + chr1_1:17198949-17198968 Msa0011440:CDS 40.0%
! TCTAAAGCGCCACTAAGTAA+AGG + chr1_1:17199027-17199046 Msa0011440:CDS 40.0%
TTCAAGCCATAGAAGTAGCT+AGG + chr1_1:17199067-17199086 Msa0011440:CDS 40.0%
ATCATGCCTAGCTACTTCTA+TGG - chr1_1:17199076-17199095 None:intergenic 40.0%
! TAGCTGAAACCTTTTCATGG+AGG - chr1_1:17199149-17199168 None:intergenic 40.0%
GTCTCTAATTTGATCCAACG+AGG - chr1_1:17199238-17199257 None:intergenic 40.0%
TAAGCCCTTGTGAGACTATT+TGG + chr1_1:17199333-17199352 Msa0011440:intron 40.0%
AAGCCCTTGTGAGACTATTT+GGG + chr1_1:17199334-17199353 Msa0011440:intron 40.0%
TCTCCCAAATAGTCTCACAA+GGG - chr1_1:17199340-17199359 None:intergenic 40.0%
TCAGAAACTATTGGTGTAGG+TGG + chr1_1:17199631-17199650 Msa0011440:intron 40.0%
ACCATGAAAAAGGATCTAGC+TGG + chr1_1:17199698-17199717 Msa0011440:CDS 40.0%
CCATGAAAAAGGATCTAGCT+GGG + chr1_1:17199699-17199718 Msa0011440:CDS 40.0%
AGCCACCAAAGCTTCAAATT+CGG + chr1_1:17199786-17199805 Msa0011440:intron 40.0%
! ATCCGAATTTGAAGCTTTGG+TGG - chr1_1:17199791-17199810 None:intergenic 40.0%
AGCAAGAGTTTCTACTGCTT+TGG + chr1_1:17199864-17199883 Msa0011440:CDS 40.0%
ACTCGCTTACATGGAAGAAT+TGG + chr1_1:17199891-17199910 Msa0011440:CDS 40.0%
!! ATCAGAAGTACTTGGAGAAG+AGG - chr1_1:17199968-17199987 None:intergenic 40.0%
TTAGGATGGTATGACTGAAC+TGG - chr1_1:17200048-17200067 None:intergenic 40.0%
!! TGCTTTCTCTGCTGACTTAA+AGG + chr1_1:17200092-17200111 Msa0011440:CDS 40.0%
GGATTGATATCGACATACCA+TGG - chr1_1:17200124-17200143 None:intergenic 40.0%
! TTCCATTGGGATCTGGAATA+GGG - chr1_1:17200266-17200285 None:intergenic 40.0%
! ATTCCATTGGGATCTGGAAT+AGG - chr1_1:17200267-17200286 None:intergenic 40.0%
CAAAACATTCCATTGGGATC+TGG - chr1_1:17200273-17200292 None:intergenic 40.0%
! GATCCCAATGGAATGTTTTG+AGG + chr1_1:17200273-17200292 Msa0011440:intron 40.0%
GGTTCCTCAAAACATTCCAT+TGG - chr1_1:17200280-17200299 None:intergenic 40.0%
!!! TGGAATGTTTTGAGGAACCA+TGG + chr1_1:17200281-17200300 Msa0011440:CDS 40.0%
!!! GGAATGTTTTGAGGAACCAT+GGG + chr1_1:17200282-17200301 Msa0011440:CDS 40.0%
! AGGAACCATGGGTTATCTTT+AGG + chr1_1:17200293-17200312 Msa0011440:CDS 40.0%
! GGAACCATGGGTTATCTTTA+GGG + chr1_1:17200294-17200313 Msa0011440:CDS 40.0%
! GAACCATGGGTTATCTTTAG+GGG + chr1_1:17200295-17200314 Msa0011440:CDS 40.0%
TTACCCCTAAAGATAACCCA+TGG - chr1_1:17200301-17200320 None:intergenic 40.0%
TTTACAGAGCCAAGATGAAG+GGG - chr1_1:17200373-17200392 None:intergenic 40.0%
CATTTACAGAGCCAAGATGA+AGG - chr1_1:17200375-17200394 None:intergenic 40.0%
!! TCATCTTGGCTCTGTAAATG+AGG + chr1_1:17200375-17200394 Msa0011440:CDS 40.0%
!! CATCTTGGCTCTGTAAATGA+GGG + chr1_1:17200376-17200395 Msa0011440:CDS 40.0%
GATGAATACTAACCGTGGTA+AGG - chr1_1:17200415-17200434 None:intergenic 40.0%
TAATGGTTGGATATCAGGCT+GGG + chr1_1:17200548-17200567 Msa0011440:intron 40.0%
TTGAGAAAGAAGGGATGATC+TGG + chr1_1:17200649-17200668 Msa0011440:CDS 40.0%
AAGAAGGGATGATCTGGATT+TGG + chr1_1:17200655-17200674 Msa0011440:CDS 40.0%
TGGACTATAAATCCAGAAGG+AGG - chr1_1:17200723-17200742 None:intergenic 40.0%
! GCATGGACTATAAATCCAGA+AGG - chr1_1:17200726-17200745 None:intergenic 40.0%
ACAGATTGTCATGGAACTTC+CGG + chr1_1:17200893-17200912 Msa0011440:intron 40.0%
AAAAGTAGTCCGTGTTCAAC+CGG - chr1_1:17200915-17200934 None:intergenic 40.0%
!!! AATTTTTTGACACCGGCATC+TGG + chr1_1:17201559-17201578 Msa0011440:CDS 40.0%
ATCTGGTCTGCAAGGATATT+GGG + chr1_1:17201576-17201595 Msa0011440:CDS 40.0%
GGTCGAAACTCCATATCAAT+CGG - chr1_1:17201610-17201629 None:intergenic 40.0%
! GTTGATAGAACCATACAAGG+TGG - chr1_1:17201631-17201650 None:intergenic 40.0%
CTTTGTCCTTTCAATTTCCC+GGG - chr1_1:17201670-17201689 None:intergenic 40.0%
GCTTTGTCCTTTCAATTTCC+CGG - chr1_1:17201671-17201690 None:intergenic 40.0%
CAGGTGTGTTGAACATTCTT+TGG - chr1_1:17201695-17201714 None:intergenic 40.0%
TCTCCATCGAAGAACCAATT+AGG - chr1_1:17202085-17202104 None:intergenic 40.0%
ACAAGCTTGGAGTAAGGTAT+AGG + chr1_1:17202436-17202455 Msa0011440:CDS 40.0%
TTGGAGTAAGGTATAGGCTT+TGG + chr1_1:17202442-17202461 Msa0011440:CDS 40.0%
!! AGTAAGGTATAGGCTTTGGA+GGG + chr1_1:17202446-17202465 Msa0011440:CDS 40.0%
! AGCCATGAAGTTCTAATGCA+AGG - chr1_1:17202613-17202632 None:intergenic 40.0%
CATATCAACACAACATTCCC+GGG - chr1_1:17202658-17202677 None:intergenic 40.0%
AATGACAAGGTTGTACTCTG+AGG + chr1_1:17202695-17202714 Msa0011440:three_prime_UTR 40.0%
TATACCACCACCATCTAAGA+TGG - chr1_1:17202783-17202802 None:intergenic 40.0%
TGGTATAACCACACCCTTAA+AGG + chr1_1:17202796-17202815 Msa0011440:three_prime_UTR 40.0%
GGTATAACCACACCCTTAAA+GGG + chr1_1:17202797-17202816 Msa0011440:three_prime_UTR 40.0%
GTATAACCACACCCTTAAAG+GGG + chr1_1:17202798-17202817 Msa0011440:three_prime_UTR 40.0%
GATTGTAACTCAAACCAGTC+AGG - chr1_1:17202867-17202886 None:intergenic 40.0%
AGCAGTAGCTATGGCATTCA+TGG - chr1_1:17197880-17197899 None:intergenic 45.0%
CTTCCAAGCTTGACACCAAA+AGG + chr1_1:17197931-17197950 Msa0011440:CDS 45.0%
!!! TACCCTTTTGGTGTCAAGCT+TGG - chr1_1:17197937-17197956 None:intergenic 45.0%
!! TCATCCATTTTGGTCCCACA+AGG - chr1_1:17198537-17198556 None:intergenic 45.0%
TGCAACGGCGTTAAAACTCT+TGG - chr1_1:17198570-17198589 None:intergenic 45.0%
GCCGTTGCATGCTCAAATTA+GGG + chr1_1:17198581-17198600 Msa0011440:intron 45.0%
TGTGTAGGGTCTACATCTTC+CGG + chr1_1:17198845-17198864 Msa0011440:intron 45.0%
! AAGCAGACAAGAAAAGTGCG+TGG + chr1_1:17198974-17198993 Msa0011440:CDS 45.0%
! AGCAGACAAGAAAAGTGCGT+GGG + chr1_1:17198975-17198994 Msa0011440:CDS 45.0%
GGGTGCGATATTTGATGTAC+AGG + chr1_1:17198996-17199015 Msa0011440:CDS 45.0%
! CTTAGTGGCGCTTTAGATCT+TGG - chr1_1:17199024-17199043 None:intergenic 45.0%
AGTACTTAGATTGGCGAGCT+CGG + chr1_1:17199100-17199119 Msa0011440:CDS 45.0%
!! CTTTTCATGGAGGAGCATGA+TGG - chr1_1:17199139-17199158 None:intergenic 45.0%
CATCATGCTCCTCCATGAAA+AGG + chr1_1:17199137-17199156 Msa0011440:CDS 45.0%
CTCTCCCAAATAGTCTCACA+AGG - chr1_1:17199341-17199360 None:intergenic 45.0%
GACTTGAATTCACGAGCTAG+AGG - chr1_1:17199671-17199690 None:intergenic 45.0%
GCTCGTGAATTCAAGTCGAT+TGG + chr1_1:17199674-17199693 Msa0011440:CDS 45.0%
GTCGATTGGCACCATGAAAA+AGG + chr1_1:17199688-17199707 Msa0011440:CDS 45.0%
!! CCCAGCTAGATCCTTTTTCA+TGG - chr1_1:17199702-17199721 None:intergenic 45.0%
! ATTAGCAGAAGCACACAGAC+AGG + chr1_1:17199733-17199752 Msa0011440:CDS 45.0%
AAGTCAGCAGAGAAAGCAAC+AGG - chr1_1:17200090-17200109 None:intergenic 45.0%
! ATTGGGATCTGGAATAGGGA+AGG - chr1_1:17200262-17200281 None:intergenic 45.0%
TTCCCTATTCCAGATCCCAA+TGG + chr1_1:17200261-17200280 Msa0011440:intron 45.0%
GTTCCGATGAATACTAACCG+TGG - chr1_1:17200420-17200439 None:intergenic 45.0%
CAGCCTGATATCCAACCATT+AGG - chr1_1:17200549-17200568 None:intergenic 45.0%
CTAATGGTTGGATATCAGGC+TGG + chr1_1:17200547-17200566 Msa0011440:intron 45.0%
AAGAAGGAAGTGATGCTGCT+GGG - chr1_1:17200695-17200714 None:intergenic 45.0%
AAAGAAGGAAGTGATGCTGC+TGG - chr1_1:17200696-17200715 None:intergenic 45.0%
CCAGAAGGAGGTAGTAAAGA+AGG - chr1_1:17200711-17200730 None:intergenic 45.0%
CCTTCTTTACTACCTCCTTC+TGG + chr1_1:17200708-17200727 Msa0011440:CDS 45.0%
TGGATTTATAGTCCATGCCG+AGG + chr1_1:17200728-17200747 Msa0011440:CDS 45.0%
ATGGAACTTCCGGTTGAACA+CGG + chr1_1:17200903-17200922 Msa0011440:CDS 45.0%
!! GGTTGAACACGGACTACTTT+TGG + chr1_1:17200914-17200933 Msa0011440:CDS 45.0%
! CTTCGACATTTGCTAAGGGA+TGG + chr1_1:17200976-17200995 Msa0011440:CDS 45.0%
TTACCTGGCATAAGCACTTG+TGG + chr1_1:17201215-17201234 Msa0011440:intron 45.0%
TACCTGGCATAAGCACTTGT+GGG + chr1_1:17201216-17201235 Msa0011440:intron 45.0%
TAAGCACTTGTGGGACTGTT+TGG + chr1_1:17201225-17201244 Msa0011440:intron 45.0%
CATCTGGTCTGCAAGGATAT+TGG + chr1_1:17201575-17201594 Msa0011440:CDS 45.0%
GGATCCCTATCCGATTGATA+TGG + chr1_1:17201597-17201616 Msa0011440:CDS 45.0%
AGGGTAAGCAGACATGTAGT+TGG - chr1_1:17201720-17201739 None:intergenic 45.0%
!!! ATGGAGGCATTTTGCAGAAC+AGG + chr1_1:17201825-17201844 Msa0011440:CDS 45.0%
TAACCACTCGGACAAATCAC+AGG - chr1_1:17202015-17202034 None:intergenic 45.0%
! GTGCCTAATTGGTTCTTCGA+TGG + chr1_1:17202079-17202098 Msa0011440:intron 45.0%
CCAAGCTTGTCATAGGTAAC+TGG - chr1_1:17202426-17202445 None:intergenic 45.0%
CCAGTTACCTATGACAAGCT+TGG + chr1_1:17202423-17202442 Msa0011440:CDS 45.0%
CCTTACTCCAAGCTTGTCAT+AGG - chr1_1:17202433-17202452 None:intergenic 45.0%
CCTATGACAAGCTTGGAGTA+AGG + chr1_1:17202430-17202449 Msa0011440:CDS 45.0%
! GAGTAAGGTATAGGCTTTGG+AGG + chr1_1:17202445-17202464 Msa0011440:CDS 45.0%
TTGGAGGGATGCATTGGAAA+AGG + chr1_1:17202461-17202480 Msa0011440:CDS 45.0%
TGGAGGGATGCATTGGAAAA+GGG + chr1_1:17202462-17202481 Msa0011440:CDS 45.0%
ATCAACCTAGTGAAGCTACC+CGG + chr1_1:17202637-17202656 Msa0011440:three_prime_UTR 45.0%
GGTTTCACCATCTTAGATGG+TGG + chr1_1:17202773-17202792 Msa0011440:three_prime_UTR 45.0%
! TTCACCATCTTAGATGGTGG+TGG + chr1_1:17202776-17202795 Msa0011440:three_prime_UTR 45.0%
! AACAATCCCCTTTAAGGGTG+TGG - chr1_1:17202807-17202826 None:intergenic 45.0%
!!! ATCATTTTTTTTAAATAAAA+AGG - chr1_1:17200145-17200164 None:intergenic 5.0%
ACTCGACAAAGTTGGAGGTG+TGG + chr1_1:17198369-17198388 Msa0011440:intron 50.0%
CGCCGTTGCATGCTCAAATT+AGG + chr1_1:17198580-17198599 Msa0011440:intron 50.0%
GGAAGATGTAGACCCTACAC+AGG - chr1_1:17198846-17198865 None:intergenic 50.0%
! GCAGACAAGAAAAGTGCGTG+GGG + chr1_1:17198976-17198995 Msa0011440:CDS 50.0%
AAAGGATCTAGCTGGGTTGC+AGG + chr1_1:17199706-17199725 Msa0011440:CDS 50.0%
ACTTGGAGAAGAGGACGTCT+CGG - chr1_1:17199959-17199978 None:intergenic 50.0%
AGGGGTAAAGATGGCAAACC+TGG + chr1_1:17200313-17200332 Msa0011440:CDS 50.0%
AGAGCATGTCCCCTTCATCT+TGG + chr1_1:17200361-17200380 Msa0011440:CDS 50.0%
CGTATCGCATGTCCTTACCA+CGG + chr1_1:17200400-17200419 Msa0011440:CDS 50.0%
GGCTGGGAATATACGACAGA+CGG + chr1_1:17200564-17200583 Msa0011440:intron 50.0%
AGAAGGAAGTGATGCTGCTG+GGG - chr1_1:17200694-17200713 None:intergenic 50.0%
! CTAAGGGATGGAGTGTTCCT+AGG + chr1_1:17200988-17201007 Msa0011440:CDS 50.0%
CTGCTACCTTGGAGAACTCA+TGG - chr1_1:17201305-17201324 None:intergenic 50.0%
TATCCTTGCAGACCAGATGC+CGG - chr1_1:17201574-17201593 None:intergenic 50.0%
GGAGTTTCGACCACCTTGTA+TGG + chr1_1:17201618-17201637 Msa0011440:CDS 50.0%
ACCATTGGGATTTCGAAGCC+CGG + chr1_1:17201649-17201668 Msa0011440:CDS 50.0%
TCGAAGCCCGGGAAATTGAA+AGG + chr1_1:17201661-17201680 Msa0011440:CDS 50.0%
! AGCAGACATGTAGTTGGTGC+AGG - chr1_1:17201714-17201733 None:intergenic 50.0%
CACTCGGACAAATCACAGGT+TGG - chr1_1:17202011-17202030 None:intergenic 50.0%
! CAACCTGTGATTTGTCCGAG+TGG + chr1_1:17202009-17202028 Msa0011440:intron 50.0%
GAGGATCTACGGCTAGTAGT+TGG + chr1_1:17202357-17202376 Msa0011440:CDS 50.0%
!! TAGGCTTTGGAGGGATGCAT+TGG + chr1_1:17202455-17202474 Msa0011440:CDS 50.0%
TCAACCTAGTGAAGCTACCC+GGG + chr1_1:17202638-17202657 Msa0011440:three_prime_UTR 50.0%
! AAACCTGTGACTCGGGTGAG+TGG + chr1_1:17198276-17198295 Msa0011440:intron 55.0%
AAACCACTCACCCGAGTCAC+AGG - chr1_1:17198282-17198301 None:intergenic 55.0%
GATTACGCAGTTGCGTGCGA+AGG - chr1_1:17198507-17198526 None:intergenic 55.0%
! CGTAATCCCTCGAGCCTTGT+GGG + chr1_1:17198520-17198539 Msa0011440:intron 55.0%
TTTGGTCCCACAAGGCTCGA+GGG - chr1_1:17198529-17198548 None:intergenic 55.0%
! TTTTGGTCCCACAAGGCTCG+AGG - chr1_1:17198530-17198549 None:intergenic 55.0%
! CGAGCCTTGTGGGACCAAAA+TGG + chr1_1:17198530-17198549 Msa0011440:intron 55.0%
CAGACATGCATGCACCTCGT+TGG + chr1_1:17199221-17199240 Msa0011440:intron 55.0%
GGGATGATCTGGATTTGGCC+TGG + chr1_1:17200660-17200679 Msa0011440:CDS 55.0%
GAAGGAAGTGATGCTGCTGG+GGG - chr1_1:17200693-17200712 None:intergenic 55.0%
GTCCCACAAGTGCTTATGCC+AGG - chr1_1:17201221-17201240 None:intergenic 55.0%
CCATTGGGATTTCGAAGCCC+GGG + chr1_1:17201650-17201669 Msa0011440:CDS 55.0%
CATTCCCGGGTAGCTTCACT+AGG - chr1_1:17202645-17202664 None:intergenic 55.0%
GCGTAATCCCTCGAGCCTTG+TGG + chr1_1:17198519-17198538 Msa0011440:intron 60.0%
GGGCGTGCGCAAGATCCAAA+AGG - chr1_1:17200944-17200963 None:intergenic 60.0%
ACACCGGCATCTGGTCTGCA+AGG + chr1_1:17201568-17201587 Msa0011440:CDS 60.0%
CCCGGGCTTCGAAATCCCAA+TGG - chr1_1:17201653-17201672 None:intergenic 60.0%
GCTGCTGGGGGATCACTGCC+AGG - chr1_1:17200681-17200700 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 17197797 17202910 17197797 ID=Msa0011440;Name=Msa0011440
chr1_1 mRNA 17197797 17202910 17197797 ID=Msa0011440-mRNA-1;Parent=Msa0011440;Name=Msa0011440-mRNA-1;_AED=0.10;_eAED=0.10;_QI=82|1|1|1|1|1|9|389|531
chr1_1 exon 17197797 17197953 17197797 ID=Msa0011440-mRNA-1:exon:6264;Parent=Msa0011440-mRNA-1
chr1_1 exon 17198934 17199158 17198934 ID=Msa0011440-mRNA-1:exon:6265;Parent=Msa0011440-mRNA-1
chr1_1 exon 17199650 17199754 17199650 ID=Msa0011440-mRNA-1:exon:6266;Parent=Msa0011440-mRNA-1
chr1_1 exon 17199850 17200125 17199850 ID=Msa0011440-mRNA-1:exon:6267;Parent=Msa0011440-mRNA-1
chr1_1 exon 17200274 17200421 17200274 ID=Msa0011440-mRNA-1:exon:6268;Parent=Msa0011440-mRNA-1
chr1_1 exon 17200565 17200749 17200565 ID=Msa0011440-mRNA-1:exon:6269;Parent=Msa0011440-mRNA-1
chr1_1 exon 17200897 17201009 17200897 ID=Msa0011440-mRNA-1:exon:6270;Parent=Msa0011440-mRNA-1
chr1_1 exon 17201552 17201846 17201552 ID=Msa0011440-mRNA-1:exon:6271;Parent=Msa0011440-mRNA-1
chr1_1 exon 17202348 17202910 17202348 ID=Msa0011440-mRNA-1:exon:6272;Parent=Msa0011440-mRNA-1
chr1_1 five_prime_UTR 17197797 17197878 17197797 ID=Msa0011440-mRNA-1:five_prime_utr;Parent=Msa0011440-mRNA-1
chr1_1 CDS 17197879 17197953 17197879 ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1 CDS 17198934 17199158 17198934 ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1 CDS 17199650 17199754 17199650 ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1 CDS 17199850 17200125 17199850 ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1 CDS 17200274 17200421 17200274 ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1 CDS 17200565 17200749 17200565 ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1 CDS 17200897 17201009 17200897 ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1 CDS 17201552 17201846 17201552 ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1 CDS 17202348 17202521 17202348 ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1 three_prime_UTR 17202522 17202910 17202522 ID=Msa0011440-mRNA-1:three_prime_utr;Parent=Msa0011440-mRNA-1
Gene Sequence

>Msa0011440

ATGAATGCCATAGCTACTGCTTCTGCTTTATCTCTTCCTATCTTTTGTAGAACTTCCAAGCTTGACACCAAAAGGGGTTTGAAAGGTAAATTTGGAGTGTTTGCTGTGTTTGGAGAAGCAGACAAGAAAAGTGCGTGGGGTGCGATATTTGATGTACAGGATCCAAGATCTAAAGCGCCACTAAGTAAAGGAAAAGTTTTGGATGTATTTCAAGCCATAGAAGTAGCTAGGCATGATATTGAGTACTTAGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTCCTCCATGAAAAGGTGGTTGAAGTTCTTAATCCTCTAGCTCGTGAATTCAAGTCGATTGGCACCATGAAAAAGGATCTAGCTGGGTTGCAGGACGAATTAGCAGAAGCACACAGACAGGTCCATATATCTGAAGCAAGAGTTTCTACTGCTTTGGATAAACTCGCTTACATGGAAGAATTGGTAAATGACAGGCTATTGCAAGACAGAAGCACAGCTGAAGTTGCCGAGACGTCCTCTTCTCCAAGTACTTCTGATAAATCTGTACATACTGAAAGAAGAAGGAAGCCGAAGAAAAGCTTAAATGTATCAGGTCCAGTTCAGTCATACCATCCTAATTTAAAGAATTTCTGGTATCCTGTTGCTTTCTCTGCTGACTTAAAGGATGATTCCATGATCCCAATGGAATGTTTTGAGGAACCATGGGTTATCTTTAGGGGTAAAGATGGCAAACCTGGATGTGTTCAAAATACATGTGCACACAGAGCATGTCCCCTTCATCTTGGCTCTGTAAATGAGGGTCGTATCGCATGTCCTTACCACGGCTGGGAATATACGACAGACGGAAAATGCGAGAAAATGCCATCTACTCGAATGCTAAATGTAAAGATAAAGTCAATTCCATGTTTTGAGAAAGAAGGGATGATCTGGATTTGGCCTGGCAGTGATCCCCCAGCAGCATCACTTCCTTCTTTACTACCTCCTTCTGGATTTATAGTCCATGCCGAGATTGTCATGGAACTTCCGGTTGAACACGGACTACTTTTGGACAACCTTTTGGATCTTGCGCACGCCCCTTTTACTCATACTTCGACATTTGCTAAGGGATGGAGTGTTCCTAGCTTTGTGAATTTTTTGACACCGGCATCTGGTCTGCAAGGATATTGGGATCCCTATCCGATTGATATGGAGTTTCGACCACCTTGTATGGTTCTATCAACCATTGGGATTTCGAAGCCCGGGAAATTGAAAGGACAAAGCACCAAAGAATGTTCAACACACCTGCACCAACTACATGTCTGCTTACCCTCTTCAAAAGATAAAACAAGATTGCTATATAGAATGTCACTGGATTTCGCTCCCCTTCTTAAGCATATGCCTTTTATGGAACATCTATGGAGGCATTTTGCAGAACAGGTTTTAAATGAGGATCTACGGCTAGTAGTTGGCCAACAAGAGAGAATGAATAAAGGTGCAAATGTATGGAATGTACCAGTTACCTATGACAAGCTTGGAGTAAGGTATAGGCTTTGGAGGGATGCATTGGAAAAGGGAGATAAGCAACTACCCTTCAACACACACAATAATTAA

Protein sequence

>Msa0011440

MNAIATASALSLPIFCRTSKLDTKRGLKGKFGVFAVFGEADKKSAWGAIFDVQDPRSKAPLSKGKVLDVFQAIEVARHDIEYLDWRARQDVLTIMLLHEKVVEVLNPLAREFKSIGTMKKDLAGLQDELAEAHRQVHISEARVSTALDKLAYMEELVNDRLLQDRSTAEVAETSSSPSTSDKSVHTERRRKPKKSLNVSGPVQSYHPNLKNFWYPVAFSADLKDDSMIPMECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIACPYHGWEYTTDGKCEKMPSTRMLNVKIKSIPCFEKEGMIWIWPGSDPPAASLPSLLPPSGFIVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLKGQSTKECSTHLHQLHVCLPSSKDKTRLLYRMSLDFAPLLKHMPFMEHLWRHFAEQVLNEDLRLVVGQQERMNKGANVWNVPVTYDKLGVRYRLWRDALEKGDKQLPFNTHNN*