AlfalfaGEDB | Msa0011440

M. sativa cultivar zhongmu-4 / Msa0011440

KEGG: K13600
GO: GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009706 GO:0009941 GO:0009987 GO:0010277 GO:0015994 GO:0015995 GO:0016020 GO:0016491 GO:0016701 GO:0016703 GO:0018130 GO:0019438 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042170 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00355.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011440	sp\|Q9MBA1\|CAO_ARATH	75.376	532	124	2	3	527	4	535	0.0	833

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0011440	0.812660	3.792061e-51	-8.615850e-47
Msa0000800	Msa0011440	-0.817217	3.698418e-52	-8.615850e-47
Msa0001040	Msa0011440	0.809348	1.977765e-50	-8.615850e-47
Msa0001510	Msa0011440	0.850174	2.014050e-60	-8.615850e-47
Msa0001550	Msa0011440	0.840596	7.907677e-58	-8.615850e-47
Msa0002110	Msa0011440	0.929474	6.597742e-93	-8.615850e-47
Msa0002690	Msa0011440	0.925663	1.351868e-90	-8.615850e-47
Msa0002700	Msa0011440	0.928605	2.278867e-92	-8.615850e-47
Msa0003340	Msa0011440	0.839898	1.203046e-57	-8.615850e-47
Msa0004180	Msa0011440	0.914368	2.081918e-84	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011440	MtrunA17_Chr1g0159921	99.058	531	5	0	1	531	1	531	0.0	1099
Msa0011440	MtrunA17_Chr3g0136771	25.926	351	211	15	210	531	99	429	3.99e-26	112
Msa0011440	MtrunA17_Chr8g0378671	23.077	442	253	22	129	513	2	413	2.47e-14	75.9
Msa0011440	MtrunA17_Chr8g0378721	21.448	359	211	14	213	521	85	422	6.94e-14	74.3
Msa0011440	MtrunA17_Chr8g0378701	21.594	389	221	16	121	455	8	366	3.15e-11	65.5
Msa0011440	MtrunA17_Chr4g0027961	25.862	174	109	6	210	364	93	265	3.76e-11	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011440	AT1G44446.1	75.376	532	124	2	3	527	4	535	0.0	833
Msa0011440	AT1G44446.2	75.417	480	111	2	3	475	4	483	0.0	743
Msa0011440	AT1G44446.4	78.060	433	95	0	95	527	1	433	0.0	718
Msa0011440	AT1G44446.3	72.324	383	99	2	3	378	4	386	0.0	558
Msa0011440	AT2G24820.1	25.000	336	209	12	213	520	88	408	3.61e-25	109
Msa0011440	AT3G44880.1	26.667	225	138	9	210	410	85	306	8.42e-12	68.2

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Find 159 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCATATGCTTAAGAA+GGG	0.554581	1_1:-17201791	None:intergenic
AAAAGTAGTCCGTGTTCAAC+CGG	0.449428	1_1:-17200912	None:intergenic
AAACTCCATATCAATCGGAT+AGG	0.523237	1_1:-17201602	None:intergenic
AAACTCTTGCTTCAGATATA+TGG	0.329301	1_1:-17199852	None:intergenic
AAAGAAGGAAGTGATGCTGC+TGG	0.539768	1_1:-17200693	None:intergenic
AAAGGATCTAGCTGGGTTGC+AGG	0.360380	1_1:+17199706	Msa0011440:CDS
AAAGGCATATGCTTAAGAAG+GGG	0.645865	1_1:-17201790	None:intergenic
AACAATCCCCTTTAAGGGTG+TGG	0.490466	1_1:-17202804	None:intergenic
AACCTTGCATTAGAACTTCA+TGG	0.356961	1_1:+17202608	Msa0011440:three_prime_UTR
AACTCCATATCAATCGGATA+GGG	0.548896	1_1:-17201601	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGAAGTTCTACAAAAGAT+AGG	-	chr1_1:17197918-17197937	None:intergenic	30.0%
TCTAAATTTAATAGCGGCAT+AGG	-	chr1_1:17198450-17198469	None:intergenic	30.0%
GAACTTAGAGAAACGAATTT+CGG	+	chr1_1:17198607-17198626	Msa0011440:intron	30.0%
ATACTCTTTCATATATGGAC+CGG	-	chr1_1:17198867-17198886	None:intergenic	30.0%
GACATATTTGAGCTTATCTA+TGG	+	chr1_1:17199307-17199326	Msa0011440:intron	30.0%
CTTATTTCCATAAACTCTCT+AGG	+	chr1_1:17199403-17199422	Msa0011440:intron	30.0%
ATATAGGGAGAATACAACAA+CGG	-	chr1_1:17199573-17199592	None:intergenic	30.0%
GATGCTTTATAGCACATATA+GGG	-	chr1_1:17199588-17199607	None:intergenic	30.0%
TATTAAGATAAGCACATGGT+GGG	-	chr1_1:17199610-17199629	None:intergenic	30.0%
TTATTAAGATAAGCACATGG+TGG	-	chr1_1:17199611-17199630	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	17197797	17202910	17197797	ID=Msa0011440;Name=Msa0011440
chr1_1	mRNA	17197797	17202910	17197797	ID=Msa0011440-mRNA-1;Parent=Msa0011440;Name=Msa0011440-mRNA-1;_AED=0.10;_eAED=0.10;_QI=82\|1\|1\|1\|1\|1\|9\|389\|531
chr1_1	exon	17197797	17197953	17197797	ID=Msa0011440-mRNA-1:exon:6264;Parent=Msa0011440-mRNA-1
chr1_1	exon	17198934	17199158	17198934	ID=Msa0011440-mRNA-1:exon:6265;Parent=Msa0011440-mRNA-1
chr1_1	exon	17199650	17199754	17199650	ID=Msa0011440-mRNA-1:exon:6266;Parent=Msa0011440-mRNA-1
chr1_1	exon	17199850	17200125	17199850	ID=Msa0011440-mRNA-1:exon:6267;Parent=Msa0011440-mRNA-1
chr1_1	exon	17200274	17200421	17200274	ID=Msa0011440-mRNA-1:exon:6268;Parent=Msa0011440-mRNA-1
chr1_1	exon	17200565	17200749	17200565	ID=Msa0011440-mRNA-1:exon:6269;Parent=Msa0011440-mRNA-1
chr1_1	exon	17200897	17201009	17200897	ID=Msa0011440-mRNA-1:exon:6270;Parent=Msa0011440-mRNA-1
chr1_1	exon	17201552	17201846	17201552	ID=Msa0011440-mRNA-1:exon:6271;Parent=Msa0011440-mRNA-1
chr1_1	exon	17202348	17202910	17202348	ID=Msa0011440-mRNA-1:exon:6272;Parent=Msa0011440-mRNA-1
chr1_1	five_prime_UTR	17197797	17197878	17197797	ID=Msa0011440-mRNA-1:five_prime_utr;Parent=Msa0011440-mRNA-1
chr1_1	CDS	17197879	17197953	17197879	ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1	CDS	17198934	17199158	17198934	ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1	CDS	17199650	17199754	17199650	ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1	CDS	17199850	17200125	17199850	ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1	CDS	17200274	17200421	17200274	ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1	CDS	17200565	17200749	17200565	ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1	CDS	17200897	17201009	17200897	ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1	CDS	17201552	17201846	17201552	ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1	CDS	17202348	17202521	17202348	ID=Msa0011440-mRNA-1:cds;Parent=Msa0011440-mRNA-1
chr1_1	three_prime_UTR	17202522	17202910	17202522	ID=Msa0011440-mRNA-1:three_prime_utr;Parent=Msa0011440-mRNA-1

Gene Sequence

>Msa0011440

ATGAATGCCATAGCTACTGCTTCTGCTTTATCTCTTCCTATCTTTTGTAGAACTTCCAAGCTTGACACCAAAAGGGGTTTGAAAGGTAAATTTGGAGTGTTTGCTGTGTTTGGAGAAGCAGACAAGAAAAGTGCGTGGGGTGCGATATTTGATGTACAGGATCCAAGATCTAAAGCGCCACTAAGTAAAGGAAAAGTTTTGGATGTATTTCAAGCCATAGAAGTAGCTAGGCATGATATTGAGTACTTAGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTCCTCCATGAAAAGGTGGTTGAAGTTCTTAATCCTCTAGCTCGTGAATTCAAGTCGATTGGCACCATGAAAAAGGATCTAGCTGGGTTGCAGGACGAATTAGCAGAAGCACACAGACAGGTCCATATATCTGAAGCAAGAGTTTCTACTGCTTTGGATAAACTCGCTTACATGGAAGAATTGGTAAATGACAGGCTATTGCAAGACAGAAGCACAGCTGAAGTTGCCGAGACGTCCTCTTCTCCAAGTACTTCTGATAAATCTGTACATACTGAAAGAAGAAGGAAGCCGAAGAAAAGCTTAAATGTATCAGGTCCAGTTCAGTCATACCATCCTAATTTAAAGAATTTCTGGTATCCTGTTGCTTTCTCTGCTGACTTAAAGGATGATTCCATGATCCCAATGGAATGTTTTGAGGAACCATGGGTTATCTTTAGGGGTAAAGATGGCAAACCTGGATGTGTTCAAAATACATGTGCACACAGAGCATGTCCCCTTCATCTTGGCTCTGTAAATGAGGGTCGTATCGCATGTCCTTACCACGGCTGGGAATATACGACAGACGGAAAATGCGAGAAAATGCCATCTACTCGAATGCTAAATGTAAAGATAAAGTCAATTCCATGTTTTGAGAAAGAAGGGATGATCTGGATTTGGCCTGGCAGTGATCCCCCAGCAGCATCACTTCCTTCTTTACTACCTCCTTCTGGATTTATAGTCCATGCCGAGATTGTCATGGAACTTCCGGTTGAACACGGACTACTTTTGGACAACCTTTTGGATCTTGCGCACGCCCCTTTTACTCATACTTCGACATTTGCTAAGGGATGGAGTGTTCCTAGCTTTGTGAATTTTTTGACACCGGCATCTGGTCTGCAAGGATATTGGGATCCCTATCCGATTGATATGGAGTTTCGACCACCTTGTATGGTTCTATCAACCATTGGGATTTCGAAGCCCGGGAAATTGAAAGGACAAAGCACCAAAGAATGTTCAACACACCTGCACCAACTACATGTCTGCTTACCCTCTTCAAAAGATAAAACAAGATTGCTATATAGAATGTCACTGGATTTCGCTCCCCTTCTTAAGCATATGCCTTTTATGGAACATCTATGGAGGCATTTTGCAGAACAGGTTTTAAATGAGGATCTACGGCTAGTAGTTGGCCAACAAGAGAGAATGAATAAAGGTGCAAATGTATGGAATGTACCAGTTACCTATGACAAGCTTGGAGTAAGGTATAGGCTTTGGAGGGATGCATTGGAAAAGGGAGATAAGCAACTACCCTTCAACACACACAATAATTAA

Protein sequence

>Msa0011440

MNAIATASALSLPIFCRTSKLDTKRGLKGKFGVFAVFGEADKKSAWGAIFDVQDPRSKAPLSKGKVLDVFQAIEVARHDIEYLDWRARQDVLTIMLLHEKVVEVLNPLAREFKSIGTMKKDLAGLQDELAEAHRQVHISEARVSTALDKLAYMEELVNDRLLQDRSTAEVAETSSSPSTSDKSVHTERRRKPKKSLNVSGPVQSYHPNLKNFWYPVAFSADLKDDSMIPMECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIACPYHGWEYTTDGKCEKMPSTRMLNVKIKSIPCFEKEGMIWIWPGSDPPAASLPSLLPPSGFIVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLKGQSTKECSTHLHQLHVCLPSSKDKTRLLYRMSLDFAPLLKHMPFMEHLWRHFAEQVLNEDLRLVVGQQERMNKGANVWNVPVTYDKLGVRYRLWRDALEKGDKQLPFNTHNN*