AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0300130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300130 MtrunA17_Chr2g0324891 98.585 424 5 1 1 423 1 424 0.0 857
Msa0300130 MtrunA17_Chr4g0040481 60.674 445 127 18 1 421 1 421 2.49e-148 427
Msa0300130 MtrunA17_Chr5g0400241 36.194 268 126 8 154 416 305 532 1.60e-41 154
Msa0300130 MtrunA17_Chr4g0054981 32.479 351 180 15 91 421 235 548 3.98e-41 153
Msa0300130 MtrunA17_Chr3g0137101 50.000 74 37 0 154 227 192 265 1.81e-17 84.7
Msa0300130 MtrunA17_Chr2g0304841 37.190 121 72 2 155 274 208 325 3.94e-17 84.0
Msa0300130 MtrunA17_Chr1g0161431 56.061 66 29 0 153 218 193 258 2.25e-16 81.3
Msa0300130 MtrunA17_Chr4g0067981 58.333 60 25 0 159 218 214 273 3.67e-16 80.9
Msa0300130 MtrunA17_Chr4g0009851 39.362 94 54 2 124 216 134 225 1.07e-15 77.4
Msa0300130 MtrunA17_Chr1g0149841 53.030 66 31 0 157 222 188 253 1.37e-15 78.6
Msa0300130 MtrunA17_Chr7g0255711 51.667 60 29 0 159 218 90 149 4.73e-15 75.5
Msa0300130 MtrunA17_Chr4g0009981 44.000 75 40 1 142 216 100 172 1.44e-14 73.6
Msa0300130 MtrunA17_Chr4g0009901 43.678 87 44 1 130 216 143 224 2.21e-14 73.2
Msa0300130 MtrunA17_Chr4g0031961 43.038 79 43 1 159 237 130 206 3.27e-14 73.2
Msa0300130 MtrunA17_Chr2g0294911 53.333 60 28 0 159 218 210 269 3.80e-14 74.3
Msa0300130 MtrunA17_Chr8g0376881 46.377 69 37 0 159 227 208 276 1.01e-13 72.8
Msa0300130 MtrunA17_Chr7g0275891 33.571 140 71 5 155 275 186 322 2.29e-13 70.9
Msa0300130 MtrunA17_Chr4g0074411 34.247 146 81 5 109 242 140 282 7.34e-13 70.5
Msa0300130 MtrunA17_Chr4g0074401 50.909 55 27 0 158 212 201 255 8.27e-13 70.1
Msa0300130 MtrunA17_Chr3g0123131 43.662 71 40 0 159 229 198 268 1.05e-12 69.7
Msa0300130 MtrunA17_Chr3g0134481 51.064 47 23 0 165 211 137 183 3.64e-12 65.1
Msa0300130 MtrunA17_Chr6g0461641 54.545 55 24 1 162 215 44 98 4.24e-12 67.4
Msa0300130 MtrunA17_Chr6g0473731 45.205 73 39 1 159 231 94 165 6.52e-12 67.0
Msa0300130 MtrunA17_Chr1g0198601 50.000 60 29 1 158 216 209 268 7.16e-12 66.6
Msa0300130 MtrunA17_Chr4g0062921 43.056 72 40 1 146 216 221 292 7.45e-12 67.0
Msa0300130 MtrunA17_Chr5g0422621 35.922 103 58 2 122 216 153 255 1.08e-11 65.9
Msa0300130 MtrunA17_Chr7g0275401 33.929 112 67 2 111 216 138 248 1.14e-11 65.1
Msa0300130 MtrunA17_Chr2g0321461 53.846 52 23 1 162 212 47 98 2.11e-11 65.1
Msa0300130 MtrunA17_Chr4g0074421 31.944 144 58 5 106 209 39 182 2.37e-11 62.8
Msa0300130 MtrunA17_Chr4g0045361 49.180 61 30 1 159 218 273 333 2.88e-11 65.1
Msa0300130 MtrunA17_Chr3g0134461 49.057 53 27 0 157 209 140 192 3.98e-11 62.0
Msa0300130 MtrunA17_Chr1g0149831 45.455 66 33 1 157 222 125 187 4.09e-11 62.8
Msa0300130 MtrunA17_Chr2g0291021 53.704 54 24 1 160 212 49 102 4.96e-11 63.5
Msa0300130 MtrunA17_Chr1g0190301 49.153 59 29 1 158 215 173 231 5.06e-11 63.9
Msa0300130 MtrunA17_Chr4g0009991 44.118 68 36 1 142 209 51 116 5.19e-11 60.1
Msa0300130 MtrunA17_Chr5g0417521 53.846 52 23 1 162 212 17 68 6.23e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300130 AT2G20570.1 48.985 394 143 14 56 423 59 420 4.14e-93 287
Msa0300130 AT2G20570.2 47.073 410 143 15 56 423 59 436 5.84e-89 277
Msa0300130 AT5G44190.1 42.754 414 147 16 28 420 40 384 3.99e-74 237
Msa0300130 AT5G44190.2 41.796 323 113 13 28 329 40 308 4.14e-59 197
Msa0300130 AT2G20570.3 38.579 394 137 15 56 423 59 373 1.38e-49 172
Msa0300130 AT4G18020.3 32.812 384 194 12 60 421 183 524 7.94e-35 135
Msa0300130 AT4G18020.2 32.812 384 194 12 60 421 183 524 7.94e-35 135
Msa0300130 AT4G18020.1 32.812 384 194 12 60 421 183 524 7.94e-35 135
Msa0300130 AT4G18020.6 32.812 384 194 12 60 421 183 524 7.94e-35 135
Msa0300130 AT4G18020.9 32.812 384 194 12 60 421 183 524 7.94e-35 135
Msa0300130 AT4G18020.8 31.498 327 170 11 60 364 183 477 8.34e-31 124
Msa0300130 AT4G18020.11 31.498 327 170 11 60 364 183 477 8.34e-31 124
Msa0300130 AT4G18020.4 31.498 327 170 11 60 364 183 477 8.34e-31 124
Msa0300130 AT4G18020.5 31.498 327 170 11 60 364 183 477 8.34e-31 124
Msa0300130 AT4G18020.10 31.498 327 170 11 60 364 183 477 8.34e-31 124
Msa0300130 AT4G18020.7 31.498 327 170 11 60 364 183 477 8.34e-31 124
Msa0300130 AT5G59570.2 35.333 150 82 3 100 235 68 216 1.15e-18 86.3
Msa0300130 AT5G59570.1 35.333 150 82 3 100 235 68 216 1.15e-18 86.3
Msa0300130 AT5G58080.1 52.113 71 34 0 148 218 182 252 7.40e-17 83.2
Msa0300130 AT2G01760.3 54.688 64 29 0 155 218 130 193 7.45e-16 78.6
Msa0300130 AT4G31920.1 40.426 94 53 1 153 243 176 269 8.43e-16 79.7
Msa0300130 AT3G16857.3 46.250 80 43 0 139 218 146 225 1.10e-15 79.7
Msa0300130 AT3G16857.2 46.250 80 43 0 139 218 216 295 1.19e-15 79.7
Msa0300130 AT3G16857.1 46.250 80 43 0 139 218 216 295 1.43e-15 79.3
Msa0300130 AT2G01760.1 54.688 64 29 0 155 218 195 258 1.45e-15 78.2
Msa0300130 AT2G01760.2 54.688 64 29 0 155 218 223 286 1.70e-15 78.2
Msa0300130 AT3G10760.1 51.667 60 29 0 159 218 104 163 1.91e-15 77.4
Msa0300130 AT5G05090.1 51.667 60 29 0 159 218 80 139 2.32e-15 76.3
Msa0300130 AT2G25180.1 41.860 86 50 0 158 243 193 278 3.31e-15 78.2
Msa0300130 AT3G46640.2 32.258 155 83 4 84 231 76 215 4.44e-15 76.3
Msa0300130 AT3G46640.1 32.258 155 83 4 84 231 76 215 4.44e-15 76.3
Msa0300130 AT3G46640.3 32.258 155 83 4 84 231 76 215 1.14e-14 75.1
Msa0300130 AT2G40970.1 50.877 57 28 0 162 218 107 163 4.71e-14 72.0
Msa0300130 AT5G07210.2 49.296 71 32 1 159 229 221 287 4.88e-14 74.3
Msa0300130 AT5G07210.1 49.296 71 32 1 159 229 229 295 4.93e-14 74.3
Msa0300130 AT1G68670.1 36.508 126 68 4 137 260 193 308 1.20e-12 69.3
Msa0300130 AT1G13300.1 39.796 98 55 3 120 216 144 238 2.07e-12 68.6
Msa0300130 AT4G28610.1 46.377 69 36 1 148 215 213 281 3.33e-12 68.2
Msa0300130 AT2G03500.1 47.887 71 32 2 147 216 224 290 5.19e-12 67.8
Msa0300130 AT3G04030.1 55.556 54 23 1 160 212 45 98 5.80e-12 67.4
Msa0300130 AT2G27070.1 49.180 61 31 0 159 219 224 284 6.13e-12 67.8
Msa0300130 AT3G04030.3 55.769 52 22 1 162 212 47 98 6.62e-12 67.4
Msa0300130 AT5G18240.2 57.407 54 22 1 160 212 45 98 7.50e-12 67.0
Msa0300130 AT5G18240.3 57.407 54 22 1 160 212 45 98 7.50e-12 67.0
Msa0300130 AT5G18240.5 57.407 54 22 1 160 212 45 98 8.41e-12 67.0
Msa0300130 AT3G62670.1 42.353 85 44 2 137 216 188 272 8.63e-12 67.0
Msa0300130 AT5G18240.1 57.407 54 22 1 160 212 45 98 8.94e-12 67.0
Msa0300130 AT5G18240.4 57.407 54 22 1 160 212 45 98 8.94e-12 67.0
Msa0300130 AT1G25550.1 44.118 68 37 1 150 216 199 266 2.41e-11 65.1
Msa0300130 AT1G67710.3 53.448 58 26 1 162 218 121 178 2.97e-11 65.5
Msa0300130 AT1G67710.2 53.448 58 26 1 162 218 130 187 3.15e-11 65.5
Msa0300130 AT2G01060.1 49.180 61 29 2 153 212 9 68 3.76e-11 63.9
Msa0300130 AT1G67710.1 53.448 58 26 1 162 218 195 252 4.00e-11 65.1
Msa0300130 AT3G04030.2 50.980 51 25 0 162 212 47 97 8.90e-11 63.9

Find 227 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAAACTAAACCTTAAT+TGG 0.067573 2_3:-55492889 Msa0300130:five_prime_UTR
GGCTGTACCTTCAAGAATTT+TGG 0.101691 2_3:-55491068 Msa0300130:CDS
TATCATTTGCATATTGTAAA+TGG 0.134290 2_3:+55487144 None:intergenic
AAATTCCCTTTAATTAATTT+AGG 0.140272 2_3:+55487195 None:intergenic
GAGAATTCAGCAAGCATTTC+TGG 0.158307 2_3:+55492367 None:intergenic
TTCTCCAAGAATAGTTTAAT+TGG 0.158467 2_3:-55487029 Msa0300130:three_prime_UTR
TTCTCCAAGAAAAGGTTAAT+TGG 0.175625 2_3:-55487384 Msa0300130:three_prime_UTR
TCTTTCTGAAGGGAACTTAT+TGG 0.187055 2_3:-55492470 Msa0300130:CDS
CTTCAAGTGCTGGAGCTTTA+AGG 0.188281 2_3:+55488573 None:intergenic
CTCACCAGCCACCGGCTAAC+TGG 0.194568 2_3:-55490436 Msa0300130:CDS
TATCATCTCTATATTGTAAA+TGG 0.199349 2_3:+55487504 None:intergenic
ACGAATCTTCTGTGCAATTC+TGG 0.206442 2_3:+55491121 None:intergenic
GCACAAGATGGTGGAATATT+TGG 0.207126 2_3:+55488518 None:intergenic
GTAGTTTCTTCTTCAGATTC+TGG 0.217213 2_3:-55492235 Msa0300130:CDS
ATATGAAAATTCGTCGAATT+AGG 0.217599 2_3:+55488448 None:intergenic
TCCTTAATGGACTTTGAAAA+TGG 0.246047 2_3:+55492935 None:intergenic
TCCCTTGCCGCTTCCTAAAA+AGG 0.249720 2_3:-55492966 Msa0300130:five_prime_UTR
TGAGGCCCTAAATTAATTAA+AGG 0.259435 2_3:-55487201 Msa0300130:three_prime_UTR
AATTCCCTTTAATTAATTTA+GGG 0.261718 2_3:+55487196 None:intergenic
TATGGATATCCTGTCATTAT+TGG 0.263579 2_3:-55487341 Msa0300130:three_prime_UTR
GATGATAATAATATGCTTAA+TGG 0.269874 2_3:-55487488 Msa0300130:three_prime_UTR
ATGACATTGTTAGGATTATA+AGG 0.270439 2_3:-55488271 Msa0300130:three_prime_UTR
AAAAGTAGAGATCTTGGATT+TGG 0.271356 2_3:-55487746 Msa0300130:three_prime_UTR
AAAATCTATGTAAACTATAT+AGG 0.277657 2_3:+55487555 None:intergenic
GGAACTAGTGCTCTCCTTAA+TGG 0.279221 2_3:+55492922 None:intergenic
GCTAGCATGATAATCCTATT+TGG 0.284706 2_3:+55492577 None:intergenic
AATCATTGATCCTACAAGTA+TGG 0.288203 2_3:-55487868 Msa0300130:three_prime_UTR
CGACAACACCGGGATCTAAT+TGG 0.291081 2_3:+55489169 None:intergenic
ATGATAATAATATGCTTAAT+GGG 0.297319 2_3:-55487487 Msa0300130:three_prime_UTR
TGCCATGTGTGGACAAATTT+AGG 0.298411 2_3:-55487106 Msa0300130:three_prime_UTR
ATGCGAAATATGACATTGTT+AGG 0.298666 2_3:-55488280 Msa0300130:three_prime_UTR
AATCAAGAAACTAGCCAAAT+AGG 0.299124 2_3:-55492591 Msa0300130:five_prime_UTR
AGGTTTGAAGAAAATTTAAT+AGG 0.299976 2_3:+55488082 None:intergenic
AATTCTCCTCCATTTCTCTT+TGG 0.309622 2_3:+55492521 None:intergenic
TATGAAAATTCGTCGAATTA+GGG 0.311470 2_3:+55488449 None:intergenic
GTTCCTGCAGTTGGTGCATT+TGG 0.315113 2_3:+55489486 None:intergenic
AAAGAGATATTGTGAATCAT+TGG 0.319597 2_3:-55490577 Msa0300130:CDS
ATACATGTAAAGGTCTAAAA+TGG 0.320147 2_3:+55490513 None:intergenic
TCTCCAAGAAAAGGTTAATT+GGG 0.322422 2_3:-55487383 Msa0300130:three_prime_UTR
CCAAGAGGCAACGGTAAATA+TGG 0.326100 2_3:+55488596 None:intergenic
AAATCTATGTAAACTATATA+GGG 0.328882 2_3:+55487556 None:intergenic
TCTCCAAGAATAGTTTAATT+GGG 0.329430 2_3:-55487028 Msa0300130:three_prime_UTR
AGAATAGTATATAATATATT+AGG 0.340543 2_3:+55493137 None:intergenic
ATCTTGTAATGATGGGAATA+TGG 0.342028 2_3:-55492293 Msa0300130:CDS
ATTCATAGAGGGCTCAAATA+AGG 0.345907 2_3:-55487289 Msa0300130:three_prime_UTR
ATTTGGCTCTCCAACCGTTC+CGG 0.346150 2_3:-55489217 Msa0300130:CDS
TGGTGTTTCGAGCTCACTTT+AGG 0.347235 2_3:-55487422 Msa0300130:three_prime_UTR
GACCTCATATTCTCAACATT+TGG 0.353132 2_3:+55487461 None:intergenic
GAAATATGCGAATAAATTCT+TGG 0.358910 2_3:+55487955 None:intergenic
GATTATACAATGAGGATGTT+TGG 0.359140 2_3:-55487779 Msa0300130:three_prime_UTR
CTTCCTTTCTCACCTTCCTT+AGG 0.364182 2_3:+55492151 None:intergenic
CGAATCTTCTGTGCAATTCT+GGG 0.366108 2_3:+55491122 None:intergenic
TTTGGCTCTCCAACCGTTCC+GGG 0.371933 2_3:-55489216 Msa0300130:CDS
TACTATAAAATGCAGAGATT+TGG 0.372430 2_3:-55489234 Msa0300130:intron
GACCATCTCACGCTCTTTCA+TGG 0.373796 2_3:-55487628 Msa0300130:three_prime_UTR
ATGAAATTTGAAAGGTGTAA+TGG 0.375705 2_3:+55493255 None:intergenic
GGAAGCGGCAAGGGAGTGTT+TGG 0.376181 2_3:+55492974 None:intergenic
GACGGTAAAAGTAGAGATCT+TGG 0.382908 2_3:-55487752 Msa0300130:three_prime_UTR
GGCTGGTGAGGCGAATATTT+AGG 0.392643 2_3:+55490449 None:intergenic
CGCGCAGGTGCCCAGTTAGC+CGG 0.396067 2_3:+55490425 None:intergenic
GAGGCCCTAAATTAATTAAA+GGG 0.400320 2_3:-55487200 Msa0300130:three_prime_UTR
AATAGCAAATCTTGTAATGA+TGG 0.402167 2_3:-55492301 Msa0300130:CDS
TTGATGAAAGCCGATTGATT+TGG 0.413035 2_3:+55487931 None:intergenic
AAAAGTAGAGAAGTAGCTAT+TGG 0.415038 2_3:-55487910 Msa0300130:three_prime_UTR
GCATGGGGTGGTGGAATGCC+CGG 0.416738 2_3:+55489198 None:intergenic
GGAGGTGGAGCCGGCCGCGC+AGG 0.417257 2_3:+55490410 None:intergenic
TCACTCACTCCCATACTTGT+AGG 0.418876 2_3:+55487858 None:intergenic
TTCTCACCTTCCTTAGGCAA+TGG 0.418890 2_3:+55492157 None:intergenic
ATCATTTGCATATTGTAAAT+GGG 0.420434 2_3:+55487145 None:intergenic
ATAATTTCCAAAATTCTTGA+AGG 0.422640 2_3:+55491061 None:intergenic
ATTGTAAATGGACGATCATC+AGG 0.422811 2_3:+55487516 None:intergenic
TGGTACATGGCATGGGGTGG+TGG 0.423225 2_3:+55489189 None:intergenic
TTTGGAACAAATAGAGGAGT+TGG 0.424569 2_3:-55490605 Msa0300130:CDS
AGATGAAAGCCAAAGAGAAA+TGG 0.427037 2_3:-55492530 Msa0300130:CDS
CTTCAAACCTAAAATTGTCT+TGG 0.437574 2_3:-55488069 Msa0300130:three_prime_UTR
TGAGGAGATGGTTGACCGGC+GGG 0.442250 2_3:+55489144 None:intergenic
CCATATTTACCGTTGCCTCT+TGG 0.442998 2_3:-55488596 Msa0300130:CDS
AGTCAAAGGAGGCAATTGTT+TGG 0.445411 2_3:-55490623 Msa0300130:CDS
AAGAGATATTGTGAATCATT+GGG 0.445666 2_3:-55490576 Msa0300130:CDS
CCTTCCTTAGGCAATGGATT+CGG 0.447175 2_3:+55492163 None:intergenic
CCACCATCTTGTGCTTGAAA+AGG 0.447432 2_3:-55488509 Msa0300130:exon
TAACTGGGCACCTGCGCGGC+CGG 0.450504 2_3:-55490420 Msa0300130:CDS
GAAGGTGGCTGGCGATGTTA+TGG 0.452271 2_3:+55491017 None:intergenic
AGAGCAGCTAGGTGTGGATA+AGG 0.452338 2_3:-55491089 Msa0300130:CDS
CAATTGTTTGGAACAAATAG+AGG 0.452627 2_3:-55490611 Msa0300130:CDS
GGTCTTTGATGAAAATCATT+TGG 0.453496 2_3:-55487442 Msa0300130:three_prime_UTR
ATCTAATTGGTACATGGCAT+GGG 0.454562 2_3:+55489182 None:intergenic
ATTGGTGAATGAGAACTCTA+TGG 0.456123 2_3:-55487323 Msa0300130:three_prime_UTR
GCATATTTCTCCAAATCAAT+CGG 0.456128 2_3:-55487941 Msa0300130:three_prime_UTR
CCTCAGCAGCAGTGAGGAAT+CGG 0.456562 2_3:-55492344 Msa0300130:CDS
TCTTGGAGAAATTAACTCTC+AGG 0.457979 2_3:+55487042 None:intergenic
GTGCCCAGTTAGCCGGTGGC+TGG 0.461785 2_3:+55490432 None:intergenic
GGATATCCATACAAGAAAAC+AGG 0.467906 2_3:+55487353 None:intergenic
GGTCTTTGATGACAATCCTC+TGG 0.467933 2_3:-55487085 Msa0300130:three_prime_UTR
AGAATTCAGCAAGCATTTCT+GGG 0.469918 2_3:+55492368 None:intergenic
CTTAAAGCTCCAGCACTTGA+AGG 0.470221 2_3:-55488572 Msa0300130:CDS
AAATATGCGAATAAATTCTT+GGG 0.470789 2_3:+55487956 None:intergenic
AAAGTAGAGATCTTGGATTT+GGG 0.471575 2_3:-55487745 Msa0300130:three_prime_UTR
CTCATTAATATCATCTTCCT+CGG 0.472160 2_3:+55488230 None:intergenic
AAGAAAACTAAACCTTAATT+GGG 0.474016 2_3:-55492888 Msa0300130:five_prime_UTR
CAACGACGGAGATGTGTTAC+CGG 0.474780 2_3:-55492404 Msa0300130:CDS
ACCGTTGTTGTCAGAGGCTG+TGG 0.475841 2_3:+55489453 None:intergenic
ATGAAGGTAAATATTCAAAG+AGG 0.484530 2_3:-55487664 Msa0300130:three_prime_UTR
GATTTAATTTCTCCAAGAAA+AGG 0.484632 2_3:-55487392 Msa0300130:three_prime_UTR
AAGCAGCAAGCTGGAGTCAA+AGG 0.486273 2_3:-55490637 Msa0300130:CDS
TCTAAGAGAGGCTGAGGAGA+TGG 0.487017 2_3:+55489132 None:intergenic
GGTGGAATGCCCGGAACGGT+TGG 0.487870 2_3:+55489207 None:intergenic
GTTGTGTAAATTAGGTGGAT+TGG 0.489509 2_3:-55491147 Msa0300130:intron
CGCTTCGTATTGGCATCAAC+GGG 0.494965 2_3:-55490384 Msa0300130:intron
TCACCAGCCACCGGCTAACT+GGG 0.495747 2_3:-55490435 Msa0300130:CDS
ATTCAAAGAGGGCTCAAGTA+AGG 0.499377 2_3:-55487652 Msa0300130:three_prime_UTR
CCCATCACACCTTCAAGTGC+TGG 0.500993 2_3:+55488563 None:intergenic
GGAGGTTGAGTCGCTTGATA+AGG 0.501127 2_3:-55487229 Msa0300130:three_prime_UTR
TGGCGATGTTATGGCGGGTG+AGG 0.501153 2_3:+55491026 None:intergenic
GAATCGGATATAAATTCATC+AGG 0.503029 2_3:-55492328 Msa0300130:CDS
TGCATAAACGACTGATCCAC+GGG 0.503874 2_3:+55490479 None:intergenic
TCATCTCTTATGCTACTCAA+TGG 0.503989 2_3:+55492547 None:intergenic
AGCCAAATGTTGAGAATATG+AGG 0.504125 2_3:-55487463 Msa0300130:three_prime_UTR
AATATATACTTGAAGGTGGC+TGG 0.504816 2_3:+55491006 None:intergenic
GTGAAGCTGAAGCAGCAAGC+TGG 0.505371 2_3:-55490646 Msa0300130:CDS
CATTGGGTTGCACCAACCAT+GGG 0.506502 2_3:-55490560 Msa0300130:CDS
CTCCAAGAATAGTTTAATTG+GGG 0.507075 2_3:-55487027 Msa0300130:three_prime_UTR
TGGTGTACTGGTGGCATGGG+AGG 0.508769 2_3:+55490533 None:intergenic
CCCGGTGTTGTCGTCCCCGC+CGG 0.509158 2_3:-55489159 Msa0300130:CDS
ATCATTGATCCTACAAGTAT+GGG 0.511311 2_3:-55487867 Msa0300130:three_prime_UTR
CCGGCGGGGACGACAACACC+GGG 0.512001 2_3:+55489159 None:intergenic
ATTGATTAATGAAATTTGAA+AGG 0.512527 2_3:+55493247 None:intergenic
TGGAAGTCTAAGAGAGGCTG+AGG 0.512815 2_3:+55489126 None:intergenic
CGATTCCTCACTGCTGCTGA+GGG 0.515102 2_3:+55492345 None:intergenic
CAATCAAAGAATAACCCTCA+TGG 0.515207 2_3:-55492115 Msa0300130:CDS
TTGCCTAAGGAAGGTGAGAA+AGG 0.515531 2_3:-55492154 Msa0300130:CDS
TGATGCCAATACGAAGCGTT+AGG 0.516711 2_3:+55490389 None:intergenic
TTTGGAAGAAGAAACTAGCT+TGG 0.516864 2_3:+55492992 None:intergenic
CAGTTAGCCGGTGGCTGGTG+AGG 0.522621 2_3:+55490437 None:intergenic
CACCTCCTAACGCTTCGTAT+TGG 0.524846 2_3:-55490394 Msa0300130:CDS
GACTTTGCTGATCTTTCTGA+AGG 0.529725 2_3:-55492481 Msa0300130:CDS
AGATTCTGGTTCGAGTCGTG+TGG 0.530001 2_3:-55492221 Msa0300130:CDS
AGGCTGAGGAGATGGTTGAC+CGG 0.530628 2_3:+55489140 None:intergenic
TCTGGGTCCATCTCAAGATC+CGG 0.530875 2_3:+55492385 None:intergenic
TCATTGGGTTGCACCAACCA+TGG 0.531353 2_3:-55490561 Msa0300130:CDS
TATGGATATCATGTTAGTGT+TGG 0.534750 2_3:-55487704 Msa0300130:three_prime_UTR
GATCTAATTGGTACATGGCA+TGG 0.535864 2_3:+55489181 None:intergenic
GGAACAAATAGAGGAGTTGG+AGG 0.536832 2_3:-55490602 Msa0300130:CDS
TGTTGGTCTACTAGACGGTA+TGG 0.537021 2_3:+55488353 None:intergenic
ATAGCAAATCTTGTAATGAT+GGG 0.538050 2_3:-55492300 Msa0300130:CDS
GAGGATGTAAATATTCATAG+AGG 0.540114 2_3:-55487301 Msa0300130:three_prime_UTR
TTACATGCTAGCTAGTAGCT+AGG 0.540287 2_3:+55492840 None:intergenic
TATATAATATATTAGGCTTG+TGG 0.543869 2_3:+55493144 None:intergenic
GAAGCGTTAGGAGGTGGAGC+CGG 0.546304 2_3:+55490401 None:intergenic
TAATGAGAACTCTACAATGA+AGG 0.546599 2_3:-55487680 Msa0300130:three_prime_UTR
TTCTTCGTATGCTTCAACGA+CGG 0.547987 2_3:-55492418 Msa0300130:CDS
GTGGCTGGCGATGTTATGGC+GGG 0.549108 2_3:+55491021 None:intergenic
CTCCAAGAAAAGGTTAATTG+GGG 0.549169 2_3:-55487382 Msa0300130:three_prime_UTR
TCTCATTCACCAATAATGAC+AGG 0.550034 2_3:+55487332 None:intergenic
ATGGGAGGGAAACCCATGGT+TGG 0.554944 2_3:+55490548 None:intergenic
ACCGGCGGGGACGACAACAC+CGG 0.556465 2_3:+55489158 None:intergenic
AAAGGTCTAAAATGGTGTAC+TGG 0.559020 2_3:+55490521 None:intergenic
AAATGGTGTACTGGTGGCAT+GGG 0.560870 2_3:+55490530 None:intergenic
TACATGCTAGCTAGTAGCTA+GGG 0.561312 2_3:+55492841 None:intergenic
AATCAAAGAATAACCCTCAT+GGG 0.562864 2_3:-55492114 Msa0300130:CDS
CAATACGAAGCGTTAGGAGG+TGG 0.565122 2_3:+55490395 None:intergenic
GGTGGCTGGCGATGTTATGG+CGG 0.567885 2_3:+55491020 None:intergenic
CTGAGGAGATGGTTGACCGG+CGG 0.568454 2_3:+55489143 None:intergenic
GGTGTACTGGTGGCATGGGA+GGG 0.568499 2_3:+55490534 None:intergenic
TCCAGCACTTGAAGGTGTGA+TGG 0.569286 2_3:-55488564 Msa0300130:CDS
GCTCCAAATGCACCAACTGC+AGG 0.571552 2_3:-55489489 Msa0300130:CDS
TTTAGACCTTTACATGTATG+GGG 0.574340 2_3:-55490509 Msa0300130:CDS
AAGCATGGTGTTCCTGCAGT+TGG 0.575770 2_3:+55489477 None:intergenic
ATGCATAAACGACTGATCCA+CGG 0.576558 2_3:+55490478 None:intergenic
GGGTGGTGGAATGCCCGGAA+CGG 0.578855 2_3:+55489203 None:intergenic
CCGATTCCTCACTGCTGCTG+AGG 0.581588 2_3:+55492344 None:intergenic
ACGCTTCGTATTGGCATCAA+CGG 0.582704 2_3:-55490385 Msa0300130:CDS
ACCGGGATCTAATTGGTACA+TGG 0.582780 2_3:+55489176 None:intergenic
GCCATGTACCAATTAGATCC+CGG 0.583653 2_3:-55489177 Msa0300130:CDS
AAAATGGTGTACTGGTGGCA+TGG 0.584070 2_3:+55490529 None:intergenic
CCGAATCCATTGCCTAAGGA+AGG 0.586652 2_3:-55492163 Msa0300130:CDS
ATCAGTCGTTTATGCATATG+TGG 0.587048 2_3:-55490472 Msa0300130:CDS
ACTTTGCTGATCTTTCTGAA+GGG 0.589658 2_3:-55492480 Msa0300130:CDS
TCGCTTGATAAGGAAGGTTG+AGG 0.589938 2_3:-55487219 Msa0300130:three_prime_UTR
GTCAGAGGCTGTGGAAAGCA+TGG 0.590043 2_3:+55489462 None:intergenic
TGAAAGCCAAAGAGAAATGG+AGG 0.591450 2_3:-55492527 Msa0300130:CDS
GCTTTAAGGCCAAGAGGCAA+CGG 0.591985 2_3:+55488587 None:intergenic
TGAAGGTAAATATTCAAAGA+GGG 0.594817 2_3:-55487663 Msa0300130:three_prime_UTR
TGTGTTACCGGATCTTGAGA+TGG 0.596115 2_3:-55492392 Msa0300130:CDS
AGCAGTAGAGCAGCTAGGTG+TGG 0.596354 2_3:-55491095 Msa0300130:CDS
GGTCTAAAATGGTGTACTGG+TGG 0.597835 2_3:+55490524 None:intergenic
TAATATATTAGGCTTGTGGA+TGG 0.598491 2_3:+55493148 None:intergenic
TTGGAGAAATTAAATCTCAG+AGG 0.598618 2_3:+55487399 None:intergenic
ATAGTTACCGTTGTTGTCAG+AGG 0.601295 2_3:+55489447 None:intergenic
GCCTCTCTTAGACTTCCATC+CGG 0.604166 2_3:-55489121 Msa0300130:intron
GTTGAGTCGCTTGATAAGGA+AGG 0.604218 2_3:-55487225 Msa0300130:three_prime_UTR
AATTGGTACATGGCATGGGG+TGG 0.606215 2_3:+55489186 None:intergenic
ATCTTGTGCTTGAAAAGGAG+AGG 0.607322 2_3:-55488504 Msa0300130:exon
CCAGCACTTGAAGGTGTGAT+GGG 0.608437 2_3:-55488563 Msa0300130:CDS
GTTTGTAAGTGTGCTACTTG+CGG 0.610520 2_3:+55493044 None:intergenic
TGTGCCGAATCCATTGCCTA+AGG 0.612555 2_3:-55492167 Msa0300130:CDS
TCCAAGAATAGTTTAATTGG+GGG 0.613225 2_3:-55487026 Msa0300130:three_prime_UTR
AACCATGAAAGAGCGTGAGA+TGG 0.615466 2_3:+55487626 None:intergenic
GACCTAAATTTGTCCACACA+TGG 0.615593 2_3:+55487104 None:intergenic
TGCCAATACGAAGCGTTAGG+AGG 0.617509 2_3:+55490392 None:intergenic
ATATTCGCCTCACCAGCCAC+CGG 0.619018 2_3:-55490444 Msa0300130:CDS
GAATCTTCTGTGCAATTCTG+GGG 0.619894 2_3:+55491123 None:intergenic
GCAGGTGCCCAGTTAGCCGG+TGG 0.633297 2_3:+55490428 None:intergenic
CAGCAAGCTGGAGTCAAAGG+AGG 0.634073 2_3:-55490634 Msa0300130:CDS
TGATAATAATATGCTTAATG+GGG 0.634602 2_3:-55487486 Msa0300130:three_prime_UTR
AAAACTATTCAACCATCCAC+CGG 0.634632 2_3:+55487597 None:intergenic
AAGTGAGCTCGAAACGCCAG+AGG 0.637419 2_3:+55487069 None:intergenic
AGGATGTAAATATTCATAGA+GGG 0.637636 2_3:-55487300 Msa0300130:three_prime_UTR
TCATGGGAAGAGAAAAGTGA+AGG 0.641795 2_3:-55492098 Msa0300130:intron
TGGCATGGGAGGGAAACCCA+TGG 0.641923 2_3:+55490544 None:intergenic
ATGGGTGAATTACAGAAACA+AGG 0.642979 2_3:-55488545 Msa0300130:CDS
TGCTAGCTAGTAGCTAGGGT+AGG 0.645094 2_3:+55492845 None:intergenic
TCTAATTGGTACATGGCATG+GGG 0.646732 2_3:+55489183 None:intergenic
TTAGACCTTTACATGTATGG+GGG 0.649002 2_3:-55490508 Msa0300130:CDS
GCTTATTGAGATGCCATGTG+TGG 0.652030 2_3:-55487117 Msa0300130:three_prime_UTR
AATGAATATATACTTGAAGG+TGG 0.660387 2_3:+55491002 None:intergenic
TAAACGACTGATCCACGGGA+TGG 0.666201 2_3:+55490483 None:intergenic
TGCAGAAATATAGATCGCAT+AGG 0.669423 2_3:-55490685 Msa0300130:intron
CGGCTAACTGGGCACCTGCG+CGG 0.670548 2_3:-55490424 Msa0300130:CDS
ACCGGATGGAAGTCTAAGAG+AGG 0.673915 2_3:+55489120 None:intergenic
GTACAAGCAGTAGAGCAGCT+AGG 0.685057 2_3:-55491100 Msa0300130:CDS
AGGCAATGGATTCGGCACAA+CGG 0.686412 2_3:+55492171 None:intergenic
GCTGGAGCTTTAAGGCCAAG+AGG 0.694599 2_3:+55488581 None:intergenic
GAGGAGATGGTTGACCGGCG+GGG 0.701590 2_3:+55489145 None:intergenic
TCCACAGCCTCTGACAACAA+CGG 0.702383 2_3:-55489454 Msa0300130:intron
GGTGAATGAGAACTCTATGG+AGG 0.709534 2_3:-55487320 Msa0300130:three_prime_UTR
ATTCTCCCTCAGCAGCAGTG+AGG 0.714171 2_3:-55492350 Msa0300130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAGTATATAATATATT+AGG + chr2_3:55487140-55487159 None:intergenic 10.0%
!!! ATAATATTATTATTTTTGGA+AGG + chr2_3:55487175-55487194 None:intergenic 10.0%
!!! TATATAATTGCTATTTAATT+TGG - chr2_3:55488211-55488230 Msa0300130:three_prime_UTR 10.0%
!! TGAAAAGAAAAAAAAATTAA+GGG + chr2_3:55488262-55488281 None:intergenic 10.0%
!! TTGAAAAGAAAAAAAAATTA+AGG + chr2_3:55488263-55488282 None:intergenic 10.0%
!! ATTGATTAATGAAATTTGAA+AGG + chr2_3:55487030-55487049 None:intergenic 15.0%
!! ATAGTTAGAATTATATTCTA+AGG - chr2_3:55487618-55487637 Msa0300130:three_prime_UTR 15.0%
!! TATAATAAACAATCAACAAA+GGG + chr2_3:55488290-55488309 None:intergenic 15.0%
!! TTATAATAAACAATCAACAA+AGG + chr2_3:55488291-55488310 None:intergenic 15.0%
!!! TCAATATATCATCAAAATTT+TGG + chr2_3:55489977-55489996 None:intergenic 15.0%
!!! CAAATAAAATGACTTTTATA+TGG + chr2_3:55490200-55490219 None:intergenic 15.0%
!! TAGACAAATAAAATGAAATA+GGG + chr2_3:55490739-55490758 None:intergenic 15.0%
!! TTAGACAAATAAAATGAAAT+AGG + chr2_3:55490740-55490759 None:intergenic 15.0%
!! TAAAAGAAAAGAAAAATTAC+CGG + chr2_3:55491175-55491194 None:intergenic 15.0%
!!! CTATTTTCAAATAATGTTTT+AGG - chr2_3:55491315-55491334 Msa0300130:intron 15.0%
!! AAATCTATGTAAACTATATA+GGG + chr2_3:55492721-55492740 None:intergenic 15.0%
!! AAAATCTATGTAAACTATAT+AGG + chr2_3:55492722-55492741 None:intergenic 15.0%
!! ATGATAATAATATGCTTAAT+GGG - chr2_3:55492787-55492806 Msa0300130:intron 15.0%
!! AATTCCCTTTAATTAATTTA+GGG + chr2_3:55493081-55493100 None:intergenic 15.0%
!! AAATTCCCTTTAATTAATTT+AGG + chr2_3:55493082-55493101 None:intergenic 15.0%
!! TATATAATATATTAGGCTTG+TGG + chr2_3:55487133-55487152 None:intergenic 20.0%
!! AAGAAAACTAAACCTTAATT+GGG - chr2_3:55487386-55487405 Msa0300130:three_prime_UTR 20.0%
!!! GTAAGTACTCTTTTATTATA+TGG - chr2_3:55487453-55487472 Msa0300130:three_prime_UTR 20.0%
!! TTCATATTACCTAAATCATA+AGG + chr2_3:55488412-55488431 None:intergenic 20.0%
!!! ATTAACTCTCTAAAATTGTA+AGG + chr2_3:55488624-55488643 None:intergenic 20.0%
!! AGATTAAACAATCAATTTCA+GGG + chr2_3:55488751-55488770 None:intergenic 20.0%
!! TAGATTAAACAATCAATTTC+AGG + chr2_3:55488752-55488771 None:intergenic 20.0%
!!! AGATCTAAGAATTATTTCTT+AGG - chr2_3:55488799-55488818 Msa0300130:intron 20.0%
!! TAGTTAGTTAGATATGTAAT+AGG + chr2_3:55488997-55489016 None:intergenic 20.0%
!! CACTTTATTATTAAATTTGC+CGG - chr2_3:55489051-55489070 Msa0300130:intron 20.0%
!! ATAATTTCCAAAATTCTTGA+AGG + chr2_3:55489216-55489235 None:intergenic 20.0%
!!! TTCAAGAATTTTGGAAATTA+TGG - chr2_3:55489215-55489234 Msa0300130:CDS 20.0%
!!! TCAAGAATTTTGGAAATTAT+GGG - chr2_3:55489216-55489235 Msa0300130:CDS 20.0%
!! GAAAATGAATATATACTTGA+AGG + chr2_3:55489278-55489297 None:intergenic 20.0%
!!! CTTTTTTTTTCAGTATATTG+AGG + chr2_3:55489321-55489340 None:intergenic 20.0%
!! ATCTACGTAAATTAAATTGT+TGG - chr2_3:55489446-55489465 Msa0300130:intron 20.0%
!! TTTACTATCCAATTAACTTA+GGG + chr2_3:55490233-55490252 None:intergenic 20.0%
!!! ACAAAAACTTAGTTTTTCTT+TGG - chr2_3:55490252-55490271 Msa0300130:intron 20.0%
!! ATAAAATGAAATAGGGAATT+AGG + chr2_3:55490732-55490751 None:intergenic 20.0%
!! ACGAAAAACAACAAAATAAA+AGG + chr2_3:55491496-55491515 None:intergenic 20.0%
!!! ATATTTTTGATAACAGTCAA+AGG - chr2_3:55491617-55491636 Msa0300130:intron 20.0%
!! AGGTTTGAAGAAAATTTAAT+AGG + chr2_3:55492195-55492214 None:intergenic 20.0%
!! CCAGAAAAAATTAATAGAAT+TGG + chr2_3:55492242-55492261 None:intergenic 20.0%
!!! CCAATTCTATTAATTTTTTC+TGG - chr2_3:55492239-55492258 Msa0300130:CDS 20.0%
!! AAATATGCGAATAAATTCTT+GGG + chr2_3:55492321-55492340 None:intergenic 20.0%
!!! TGGTTGAATAGTTTTATATA+AGG - chr2_3:55492685-55492704 Msa0300130:intron 20.0%
!! TATCATCTCTATATTGTAAA+TGG + chr2_3:55492773-55492792 None:intergenic 20.0%
!! GATGATAATAATATGCTTAA+TGG - chr2_3:55492786-55492805 Msa0300130:intron 20.0%
!! TGATAATAATATGCTTAATG+GGG - chr2_3:55492788-55492807 Msa0300130:intron 20.0%
!!! TTAATTAAAGGGAATTTTGT+TGG - chr2_3:55493085-55493104 Msa0300130:five_prime_UTR 20.0%
!!! TAATTAAAGGGAATTTTGTT+GGG - chr2_3:55493086-55493105 Msa0300130:five_prime_UTR 20.0%
!! ATCATTTGCATATTGTAAAT+GGG + chr2_3:55493132-55493151 None:intergenic 20.0%
!! TATCATTTGCATATTGTAAA+TGG + chr2_3:55493133-55493152 None:intergenic 20.0%
!! ATGAAATTTGAAAGGTGTAA+TGG + chr2_3:55487022-55487041 None:intergenic 25.0%
! CAAACAAAAATCATAAGTTG+TGG - chr2_3:55487248-55487267 Msa0300130:three_prime_UTR 25.0%
! CAAGAAAACTAAACCTTAAT+TGG - chr2_3:55487385-55487404 Msa0300130:three_prime_UTR 25.0%
!!! TTTTTTGTGTTTATAGTGTG+TGG - chr2_3:55487655-55487674 Msa0300130:three_prime_UTR 25.0%
! AATAGCAAATCTTGTAATGA+TGG - chr2_3:55487973-55487992 Msa0300130:three_prime_UTR 25.0%
! ATAGCAAATCTTGTAATGAT+GGG - chr2_3:55487974-55487993 Msa0300130:three_prime_UTR 25.0%
! CAAAAATAGTTATTCCAACA+AGG + chr2_3:55488559-55488578 None:intergenic 25.0%
!! CTTGTTGGAATAACTATTTT+TGG - chr2_3:55488557-55488576 Msa0300130:CDS 25.0%
!!! TTTTTGAAAGGTGAATCTAA+GGG + chr2_3:55488881-55488900 None:intergenic 25.0%
!!! TTTTTTGAAAGGTGAATCTA+AGG + chr2_3:55488882-55488901 None:intergenic 25.0%
!! CAGAAATTCCTTTGAATTTT+AGG + chr2_3:55488957-55488976 None:intergenic 25.0%
! CATACTATAAAGTACAAATC+CGG + chr2_3:55489073-55489092 None:intergenic 25.0%
!!! ATGTGTTTATGTTTGTTGTT+GGG - chr2_3:55489105-55489124 Msa0300130:intron 25.0%
! AATGAATATATACTTGAAGG+TGG + chr2_3:55489275-55489294 None:intergenic 25.0%
! ACGTAAATTTAAGCATCTAA+TGG - chr2_3:55489416-55489435 Msa0300130:intron 25.0%
! CGTAAATTTAAGCATCTAAT+GGG - chr2_3:55489417-55489436 Msa0300130:intron 25.0%
!!! ATAGTTGATTTATTTTAGCG+AGG - chr2_3:55489521-55489540 Msa0300130:intron 25.0%
!!! TAGTTGATTTATTTTAGCGA+GGG - chr2_3:55489522-55489541 Msa0300130:intron 25.0%
! AAAGAGATATTGTGAATCAT+TGG - chr2_3:55489697-55489716 Msa0300130:intron 25.0%
! AAGAGATATTGTGAATCATT+GGG - chr2_3:55489698-55489717 Msa0300130:intron 25.0%
! ATACATGTAAAGGTCTAAAA+TGG + chr2_3:55489764-55489783 None:intergenic 25.0%
!! ATTTTAGACCTTTACATGTA+TGG - chr2_3:55489763-55489782 Msa0300130:intron 25.0%
!! TTTTAGACCTTTACATGTAT+GGG - chr2_3:55489764-55489783 Msa0300130:intron 25.0%
!! CAAAATTTTGGATCTCTTTT+GGG + chr2_3:55489965-55489984 None:intergenic 25.0%
!! TCAAAATTTTGGATCTCTTT+TGG + chr2_3:55489966-55489985 None:intergenic 25.0%
! TTATATGGAAAATACTTGTG+TGG + chr2_3:55490185-55490204 None:intergenic 25.0%
! GTTTACTATCCAATTAACTT+AGG + chr2_3:55490234-55490253 None:intergenic 25.0%
! AGTTAGGTCATACTTAATAA+CGG - chr2_3:55490292-55490311 Msa0300130:intron 25.0%
! ACAATGAAGAGATTTAAATG+TGG + chr2_3:55490382-55490401 None:intergenic 25.0%
! TTGATCATTAGTGATACAAA+AGG + chr2_3:55490549-55490568 None:intergenic 25.0%
! TGATCAAAATATAGCAGTTT+AGG - chr2_3:55490562-55490581 Msa0300130:CDS 25.0%
! GATCAAAATATAGCAGTTTA+GGG - chr2_3:55490563-55490582 Msa0300130:CDS 25.0%
!!! GTTTCTTTCTTTTTTTGTGT+AGG - chr2_3:55490763-55490782 Msa0300130:intron 25.0%
! TTCACATAAGAATCCAAATT+TGG + chr2_3:55490894-55490913 None:intergenic 25.0%
! TACTATAAAATGCAGAGATT+TGG - chr2_3:55491040-55491059 Msa0300130:CDS 25.0%
!! CTTCTTATAATTGCTTTGAA+GGG - chr2_3:55491262-55491281 Msa0300130:intron 25.0%
! AAAGGTTGTATTTATAGACA+CGG + chr2_3:55491478-55491497 None:intergenic 25.0%
! TATGAAAATTCGTCGAATTA+GGG + chr2_3:55491828-55491847 None:intergenic 25.0%
! ATATGAAAATTCGTCGAATT+AGG + chr2_3:55491829-55491848 None:intergenic 25.0%
!! TCGAGTTAAACTTTTTATGT+TGG + chr2_3:55491941-55491960 None:intergenic 25.0%
! ATGACATTGTTAGGATTATA+AGG - chr2_3:55492003-55492022 Msa0300130:intron 25.0%
! GAAATATGCGAATAAATTCT+TGG + chr2_3:55492322-55492341 None:intergenic 25.0%
!!! GGTTTTTAGATTATACAATG+AGG - chr2_3:55492487-55492506 Msa0300130:CDS 25.0%
! ATGAAGGTAAATATTCAAAG+AGG - chr2_3:55492610-55492629 Msa0300130:intron 25.0%
! TGAAGGTAAATATTCAAAGA+GGG - chr2_3:55492611-55492630 Msa0300130:intron 25.0%
!!! TGAATAGTTTTATATAAGGC+AGG - chr2_3:55492689-55492708 Msa0300130:intron 25.0%
!! TAGTTTACATAGATTTTCGT+TGG - chr2_3:55492725-55492744 Msa0300130:intron 25.0%
!! AGTTTACATAGATTTTCGTT+GGG - chr2_3:55492726-55492745 Msa0300130:intron 25.0%
!! GATTTAATTTCTCCAAGAAA+AGG - chr2_3:55492882-55492901 Msa0300130:five_prime_UTR 25.0%
! AGGATGTAAATATTCATAGA+GGG - chr2_3:55492974-55492993 Msa0300130:five_prime_UTR 25.0%
! CACTAGTAAAAATAGAAAAG+AGG + chr2_3:55493022-55493041 None:intergenic 25.0%
!!! CTCTTTTCTATTTTTACTAG+TGG - chr2_3:55493020-55493039 Msa0300130:five_prime_UTR 25.0%
!!! TTTTCTATTTTTACTAGTGG+TGG - chr2_3:55493023-55493042 Msa0300130:five_prime_UTR 25.0%
!!! TTTCTATTTTTACTAGTGGT+GGG - chr2_3:55493024-55493043 Msa0300130:five_prime_UTR 25.0%
! TTCTCCAAGAATAGTTTAAT+TGG - chr2_3:55493245-55493264 Msa0300130:five_prime_UTR 25.0%
! TCTCCAAGAATAGTTTAATT+GGG - chr2_3:55493246-55493265 Msa0300130:five_prime_UTR 25.0%
TAATATATTAGGCTTGTGGA+TGG + chr2_3:55487129-55487148 None:intergenic 30.0%
!! AATGGTAATGTTGCCTTTTT+AGG + chr2_3:55487324-55487343 None:intergenic 30.0%
! ACCATTTTCAAAGTCCATTA+AGG - chr2_3:55487338-55487357 Msa0300130:three_prime_UTR 30.0%
!! TCCTTAATGGACTTTGAAAA+TGG + chr2_3:55487342-55487361 None:intergenic 30.0%
! TAGTTTTCTTGTGAAAGAGA+TGG + chr2_3:55487376-55487395 None:intergenic 30.0%
!!! TGATTTTTTGCACCCAATTA+AGG + chr2_3:55487401-55487420 None:intergenic 30.0%
AATCAAGAAACTAGCCAAAT+AGG - chr2_3:55487683-55487702 Msa0300130:three_prime_UTR 30.0%
GAATCGGATATAAATTCATC+AGG - chr2_3:55487946-55487965 Msa0300130:three_prime_UTR 30.0%
! ATCTTGTAATGATGGGAATA+TGG - chr2_3:55487981-55488000 Msa0300130:three_prime_UTR 30.0%
AATCAAAGAATAACCCTCAT+GGG - chr2_3:55488160-55488179 Msa0300130:three_prime_UTR 30.0%
! TGTGTAAGTGTTGTAAACTT+CGG + chr2_3:55488331-55488350 None:intergenic 30.0%
ATGGCAATACCTTATGATTT+AGG - chr2_3:55488400-55488419 Msa0300130:three_prime_UTR 30.0%
TTTGAATGCAAAAGAACTCA+CGG - chr2_3:55488498-55488517 Msa0300130:exon 30.0%
GATATATCTCATAACCTTGT+TGG - chr2_3:55488542-55488561 Msa0300130:CDS 30.0%
!! TTTTGAAAGGTGAATCTAAG+GGG + chr2_3:55488880-55488899 None:intergenic 30.0%
!!! CTTGGTCACTATTTTTTGAA+AGG + chr2_3:55488893-55488912 None:intergenic 30.0%
! CTTGGATTTTCTAATATTGG+TGG + chr2_3:55488933-55488952 None:intergenic 30.0%
! GGACTTGGATTTTCTAATAT+TGG + chr2_3:55488936-55488955 None:intergenic 30.0%
ATCCAAGTCCTAAAATTCAA+AGG - chr2_3:55488946-55488965 Msa0300130:intron 30.0%
!!! TTCCTTTGAATTTTAGGACT+TGG + chr2_3:55488951-55488970 None:intergenic 30.0%
! GTGTGAATATATTTTGTGCT+GGG + chr2_3:55489024-55489043 None:intergenic 30.0%
! TGTGTGAATATATTTTGTGC+TGG + chr2_3:55489025-55489044 None:intergenic 30.0%
!! GATGTGTTTATGTTTGTTGT+TGG - chr2_3:55489104-55489123 Msa0300130:intron 30.0%
! TGAGGTTTGAAATTAAAGAG+AGG + chr2_3:55489303-55489322 None:intergenic 30.0%
! CAATTGTTTGGAACAAATAG+AGG - chr2_3:55489663-55489682 Msa0300130:intron 30.0%
TTTAGACCTTTACATGTATG+GGG - chr2_3:55489765-55489784 Msa0300130:intron 30.0%
TAAAAGGAGAAAGACTTATG+TGG - chr2_3:55490016-55490035 Msa0300130:intron 30.0%
CTCGAGACATAAAATTAGTT+AGG - chr2_3:55490276-55490295 Msa0300130:intron 30.0%
GATTATGTTACAAACTTGCA+AGG - chr2_3:55490449-55490468 Msa0300130:CDS 30.0%
! AGAATATGAATCCAAGCTTT+TGG + chr2_3:55490522-55490541 None:intergenic 30.0%
TTGTCTTCTACTTCCAAATT+TGG - chr2_3:55490878-55490897 Msa0300130:intron 30.0%
AGAAAAGAAAAATTACCGGA+TGG + chr2_3:55491171-55491190 None:intergenic 30.0%
GCTTCTTATAATTGCTTTGA+AGG - chr2_3:55491261-55491280 Msa0300130:intron 30.0%
!! TTTTATGTTGGTCTACTAGA+CGG + chr2_3:55491929-55491948 None:intergenic 30.0%
ATGCGAAATATGACATTGTT+AGG - chr2_3:55491994-55492013 Msa0300130:intron 30.0%
! TAAGGCTGTGATTTTTGTAT+TGG - chr2_3:55492021-55492040 Msa0300130:intron 30.0%
CTCATTAATATCATCTTCCT+CGG + chr2_3:55492047-55492066 None:intergenic 30.0%
CTTCAAACCTAAAATTGTCT+TGG - chr2_3:55492205-55492224 Msa0300130:CDS 30.0%
! TACACTTCCAAGACAATTTT+AGG + chr2_3:55492215-55492234 None:intergenic 30.0%
GCATATTTCTCCAAATCAAT+CGG - chr2_3:55492333-55492352 Msa0300130:CDS 30.0%
AAAAGTAGAGAAGTAGCTAT+TGG - chr2_3:55492364-55492383 Msa0300130:CDS 30.0%
AATCATTGATCCTACAAGTA+TGG - chr2_3:55492406-55492425 Msa0300130:CDS 30.0%
ATCATTGATCCTACAAGTAT+GGG - chr2_3:55492407-55492426 Msa0300130:CDS 30.0%
TATAATCTAAAAACCCCCAA+GGG + chr2_3:55492482-55492501 None:intergenic 30.0%
GATTATACAATGAGGATGTT+TGG - chr2_3:55492495-55492514 Msa0300130:CDS 30.0%
AAAAGTAGAGATCTTGGATT+TGG - chr2_3:55492528-55492547 Msa0300130:CDS 30.0%
AAAGTAGAGATCTTGGATTT+GGG - chr2_3:55492529-55492548 Msa0300130:CDS 30.0%
TATGGATATCATGTTAGTGT+TGG - chr2_3:55492570-55492589 Msa0300130:exon 30.0%
TAATGAGAACTCTACAATGA+AGG - chr2_3:55492594-55492613 Msa0300130:five_prime_UTR 30.0%
GGTCTTTGATGAAAATCATT+TGG - chr2_3:55492832-55492851 Msa0300130:intron 30.0%
TTGGAGAAATTAAATCTCAG+AGG + chr2_3:55492878-55492897 None:intergenic 30.0%
TTCTCCAAGAAAAGGTTAAT+TGG - chr2_3:55492890-55492909 Msa0300130:five_prime_UTR 30.0%
TCTCCAAGAAAAGGTTAATT+GGG - chr2_3:55492891-55492910 Msa0300130:five_prime_UTR 30.0%
TATGGATATCCTGTCATTAT+TGG - chr2_3:55492933-55492952 Msa0300130:five_prime_UTR 30.0%
GAGGATGTAAATATTCATAG+AGG - chr2_3:55492973-55492992 Msa0300130:five_prime_UTR 30.0%
TGAGGCCCTAAATTAATTAA+AGG - chr2_3:55493073-55493092 Msa0300130:five_prime_UTR 30.0%
GAGGCCCTAAATTAATTAAA+GGG - chr2_3:55493074-55493093 Msa0300130:five_prime_UTR 30.0%
CTCCAAGAATAGTTTAATTG+GGG - chr2_3:55493247-55493266 Msa0300130:five_prime_UTR 30.0%
TCCAAGAATAGTTTAATTGG+GGG - chr2_3:55493248-55493267 Msa0300130:five_prime_UTR 30.0%
TTTGGAAGAAGAAACTAGCT+TGG + chr2_3:55487285-55487304 None:intergenic 35.0%
!! AATGTTGCCTTTTTAGGAAG+CGG + chr2_3:55487318-55487337 None:intergenic 35.0%
GCTAGCATGATAATCCTATT+TGG + chr2_3:55487700-55487719 None:intergenic 35.0%
TCATCTCTTATGCTACTCAA+TGG + chr2_3:55487730-55487749 None:intergenic 35.0%
AGATGAAAGCCAAAGAGAAA+TGG - chr2_3:55487744-55487763 Msa0300130:three_prime_UTR 35.0%
AATTCTCCTCCATTTCTCTT+TGG + chr2_3:55487756-55487775 None:intergenic 35.0%
ACTTTGCTGATCTTTCTGAA+GGG - chr2_3:55487794-55487813 Msa0300130:three_prime_UTR 35.0%
! TCTTTCTGAAGGGAACTTAT+TGG - chr2_3:55487804-55487823 Msa0300130:three_prime_UTR 35.0%
AGAATTCAGCAAGCATTTCT+GGG + chr2_3:55487909-55487928 None:intergenic 35.0%
GTAGTTTCTTCTTCAGATTC+TGG - chr2_3:55488039-55488058 Msa0300130:three_prime_UTR 35.0%
CAATCAAAGAATAACCCTCA+TGG - chr2_3:55488159-55488178 Msa0300130:three_prime_UTR 35.0%
ATATGAAGTTCATGTGAAGC+TGG - chr2_3:55488425-55488444 Msa0300130:three_prime_UTR 35.0%
TATGAAGTTCATGTGAAGCT+GGG - chr2_3:55488426-55488445 Msa0300130:three_prime_UTR 35.0%
TTGAATGCAAAAGAACTCAC+GGG - chr2_3:55488499-55488518 Msa0300130:exon 35.0%
AGCCAGTCGATCTAAATTAA+CGG - chr2_3:55488712-55488731 Msa0300130:intron 35.0%
GTGTTTGTTCCATGCATAAT+AGG - chr2_3:55488846-55488865 Msa0300130:intron 35.0%
GTACTCTAACCTATTATGCA+TGG + chr2_3:55488858-55488877 None:intergenic 35.0%
GTTCATGCAGTAATAGATCT+TGG + chr2_3:55488911-55488930 None:intergenic 35.0%
! GTTGTTGGGTTGTGTAAATT+AGG - chr2_3:55489119-55489138 Msa0300130:intron 35.0%
GTTGTGTAAATTAGGTGGAT+TGG - chr2_3:55489127-55489146 Msa0300130:CDS 35.0%
AATATATACTTGAAGGTGGC+TGG + chr2_3:55489271-55489290 None:intergenic 35.0%
TGCAGAAATATAGATCGCAT+AGG - chr2_3:55489589-55489608 Msa0300130:intron 35.0%
! TTTGGAACAAATAGAGGAGT+TGG - chr2_3:55489669-55489688 Msa0300130:intron 35.0%
! AAAGGTCTAAAATGGTGTAC+TGG + chr2_3:55489756-55489775 None:intergenic 35.0%
TTAGACCTTTACATGTATGG+GGG - chr2_3:55489766-55489785 Msa0300130:intron 35.0%
ATCAGTCGTTTATGCATATG+TGG - chr2_3:55489802-55489821 Msa0300130:intron 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG + chr2_3:55490104-55490123 None:intergenic 35.0%
TCTCTTCTCTCTCATTTCTT+TGG - chr2_3:55490127-55490146 Msa0300130:intron 35.0%
GAAAATACTTGTGTGGATCA+GGG + chr2_3:55490178-55490197 None:intergenic 35.0%
CTAGCAAACCCTAAGTTAAT+TGG - chr2_3:55490222-55490241 Msa0300130:intron 35.0%
ATGAGTCTGTACTCAAAATG+TGG - chr2_3:55490354-55490373 Msa0300130:intron 35.0%
GAAATAGGGAATTAGGAGAT+TGG + chr2_3:55490725-55490744 None:intergenic 35.0%
ATCTAATTGGTACATGGCAT+GGG + chr2_3:55491095-55491114 None:intergenic 35.0%
AGAGACAAGCAAGAAAATGA+CGG + chr2_3:55491392-55491411 None:intergenic 35.0%
! TGAATTCATGCTGTGTGTTT+TGG + chr2_3:55491437-55491456 None:intergenic 35.0%
CAAAACGTGAAATAAACTGC+TGG + chr2_3:55491529-55491548 None:intergenic 35.0%
ATGGGTGAATTACAGAAACA+AGG - chr2_3:55491729-55491748 Msa0300130:intron 35.0%
! TGAAAAGGAGAGGATGTTTT+TGG - chr2_3:55491780-55491799 Msa0300130:intron 35.0%
!!! TGTTTTTGGTTCATTGCACA+AGG - chr2_3:55491794-55491813 Msa0300130:intron 35.0%
TTGATGAAAGCCGATTGATT+TGG + chr2_3:55492346-55492365 None:intergenic 35.0%
! AAGCTTACAATTTTGTCCCT+TGG - chr2_3:55492463-55492482 Msa0300130:CDS 35.0%
! AGCTTACAATTTTGTCCCTT+GGG - chr2_3:55492464-55492483 Msa0300130:CDS 35.0%
GTATAATCTAAAAACCCCCA+AGG + chr2_3:55492483-55492502 None:intergenic 35.0%
!!! ATGAGGATGTTTGGTTTTGA+CGG - chr2_3:55492504-55492523 Msa0300130:CDS 35.0%
!! CTCTTTCATGGTTTTACTAC+CGG - chr2_3:55492658-55492677 Msa0300130:intron 35.0%
AAAACTATTCAACCATCCAC+CGG + chr2_3:55492680-55492699 None:intergenic 35.0%
ATTGTAAATGGACGATCATC+AGG + chr2_3:55492761-55492780 None:intergenic 35.0%
AGCCAAATGTTGAGAATATG+AGG - chr2_3:55492811-55492830 Msa0300130:intron 35.0%
GACCTCATATTCTCAACATT+TGG + chr2_3:55492816-55492835 None:intergenic 35.0%
CTCCAAGAAAAGGTTAATTG+GGG - chr2_3:55492892-55492911 Msa0300130:five_prime_UTR 35.0%
! CATGTACCTGTTTTCTTGTA+TGG - chr2_3:55492915-55492934 Msa0300130:five_prime_UTR 35.0%
GGATATCCATACAAGAAAAC+AGG + chr2_3:55492924-55492943 None:intergenic 35.0%
TCTCATTCACCAATAATGAC+AGG + chr2_3:55492945-55492964 None:intergenic 35.0%
ATTGGTGAATGAGAACTCTA+TGG - chr2_3:55492951-55492970 Msa0300130:five_prime_UTR 35.0%
ATTCATAGAGGGCTCAAATA+AGG - chr2_3:55492985-55493004 Msa0300130:five_prime_UTR 35.0%
TCTTGGAGAAATTAACTCTC+AGG + chr2_3:55493235-55493254 None:intergenic 35.0%
ACCCCCAATTAAACTATTCT+TGG + chr2_3:55493252-55493271 None:intergenic 35.0%
AGTTTAATTGGGGGTAAATG+TGG - chr2_3:55493257-55493276 Msa0300130:five_prime_UTR 35.0%
!! GTTTGTAAGTGTGCTACTTG+CGG + chr2_3:55487233-55487252 None:intergenic 40.0%
TACATGCTAGCTAGTAGCTA+GGG + chr2_3:55487436-55487455 None:intergenic 40.0%
TTACATGCTAGCTAGTAGCT+AGG + chr2_3:55487437-55487456 None:intergenic 40.0%
TGAAAGCCAAAGAGAAATGG+AGG - chr2_3:55487747-55487766 Msa0300130:three_prime_UTR 40.0%
GACTTTGCTGATCTTTCTGA+AGG - chr2_3:55487793-55487812 Msa0300130:three_prime_UTR 40.0%
TTCTTCGTATGCTTCAACGA+CGG - chr2_3:55487856-55487875 Msa0300130:three_prime_UTR 40.0%
GAGAATTCAGCAAGCATTTC+TGG + chr2_3:55487910-55487929 None:intergenic 40.0%
!! TCACTTTTCTCTTCCCATGA+GGG + chr2_3:55488176-55488195 None:intergenic 40.0%
!! TTCACTTTTCTCTTCCCATG+AGG + chr2_3:55488177-55488196 None:intergenic 40.0%
TCATGGGAAGAGAAAAGTGA+AGG - chr2_3:55488176-55488195 Msa0300130:three_prime_UTR 40.0%
TTTCTCCTTCTTTGAGCACA+TGG - chr2_3:55488381-55488400 Msa0300130:three_prime_UTR 40.0%
TATTGCCATGTGCTCAAAGA+AGG + chr2_3:55488389-55488408 None:intergenic 40.0%
AGATAGCGACAGATCATTCA+AGG + chr2_3:55488456-55488475 None:intergenic 40.0%
GTCCGTTAATTTAGATCGAC+TGG + chr2_3:55488717-55488736 None:intergenic 40.0%
GCATGGAACAAACACAAAAG+AGG + chr2_3:55488841-55488860 None:intergenic 40.0%
! GTTGGGTTGTGTAAATTAGG+TGG - chr2_3:55489122-55489141 Msa0300130:CDS 40.0%
GAATCTTCTGTGCAATTCTG+GGG + chr2_3:55489154-55489173 None:intergenic 40.0%
CGAATCTTCTGTGCAATTCT+GGG + chr2_3:55489155-55489174 None:intergenic 40.0%
ACGAATCTTCTGTGCAATTC+TGG + chr2_3:55489156-55489175 None:intergenic 40.0%
! GGCTGTACCTTCAAGAATTT+TGG - chr2_3:55489206-55489225 Msa0300130:CDS 40.0%
AGTCAAAGGAGGCAATTGTT+TGG - chr2_3:55489651-55489670 Msa0300130:intron 40.0%
ATGCATAAACGACTGATCCA+CGG + chr2_3:55489799-55489818 None:intergenic 40.0%
TTTGGTTGTGACCACACAAT+GGG - chr2_3:55490145-55490164 Msa0300130:intron 40.0%
GGAAAATACTTGTGTGGATC+AGG + chr2_3:55490179-55490198 None:intergenic 40.0%
ACAGCATAGAAGTTGTAGAG+AGG - chr2_3:55490404-55490423 Msa0300130:CDS 40.0%
ACTTAGCTTCACCAAAAGCT+TGG - chr2_3:55490508-55490527 Msa0300130:CDS 40.0%
ATAGTTACCGTTGTTGTCAG+AGG + chr2_3:55490830-55490849 None:intergenic 40.0%
TCTAATTGGTACATGGCATG+GGG + chr2_3:55491094-55491113 None:intergenic 40.0%
GATCTAATTGGTACATGGCA+TGG + chr2_3:55491096-55491115 None:intergenic 40.0%
GAGACAAGCAAGAAAATGAC+GGG + chr2_3:55491391-55491410 None:intergenic 40.0%
!!! TGTGTTTTGGAGAAAGAGAG+AGG + chr2_3:55491424-55491443 None:intergenic 40.0%
!! GCACAAGATGGTGGAATATT+TGG + chr2_3:55491759-55491778 None:intergenic 40.0%
!! TCTCCTTTTCAAGCACAAGA+TGG + chr2_3:55491771-55491790 None:intergenic 40.0%
ATCTTGTGCTTGAAAAGGAG+AGG - chr2_3:55491770-55491789 Msa0300130:intron 40.0%
!! TGTGATTTTTGTATTGGCCG+AGG - chr2_3:55492027-55492046 Msa0300130:intron 40.0%
! GCTTACAATTTTGTCCCTTG+GGG - chr2_3:55492465-55492484 Msa0300130:CDS 40.0%
! CTTACAATTTTGTCCCTTGG+GGG - chr2_3:55492466-55492485 Msa0300130:CDS 40.0%
GACGGTAAAAGTAGAGATCT+TGG - chr2_3:55492522-55492541 Msa0300130:CDS 40.0%
! CATGCACATGTTTTCGCATA+TGG - chr2_3:55492552-55492571 Msa0300130:CDS 40.0%
ATTCAAAGAGGGCTCAAGTA+AGG - chr2_3:55492622-55492641 Msa0300130:intron 40.0%
!! TTTCATGGTTTTACTACCGG+TGG - chr2_3:55492661-55492680 Msa0300130:intron 40.0%
! GTTTTATATAAGGCAGGTCG+AGG - chr2_3:55492695-55492714 Msa0300130:intron 40.0%
! TGCCCCAATTAACCTTTTCT+TGG + chr2_3:55492897-55492916 None:intergenic 40.0%
!!! CTATTTTTACTAGTGGTGGG+AGG - chr2_3:55493027-55493046 Msa0300130:five_prime_UTR 40.0%
TGCCATGTGTGGACAAATTT+AGG - chr2_3:55493168-55493187 Msa0300130:five_prime_UTR 40.0%
GACCTAAATTTGTCCACACA+TGG + chr2_3:55493173-55493192 None:intergenic 40.0%
TTAATTGGGGGTAAATGTGG+AGG - chr2_3:55493260-55493279 Msa0300130:five_prime_UTR 40.0%
GGAACTAGTGCTCTCCTTAA+TGG + chr2_3:55487355-55487374 None:intergenic 45.0%
TGTGTTACCGGATCTTGAGA+TGG - chr2_3:55487882-55487901 Msa0300130:three_prime_UTR 45.0%
! CCTTCCTTAGGCAATGGATT+CGG + chr2_3:55488114-55488133 None:intergenic 45.0%
TTCTCACCTTCCTTAGGCAA+TGG + chr2_3:55488120-55488139 None:intergenic 45.0%
TTGCCTAAGGAAGGTGAGAA+AGG - chr2_3:55488120-55488139 Msa0300130:three_prime_UTR 45.0%
CTTCCTTTCTCACCTTCCTT+AGG + chr2_3:55488126-55488145 None:intergenic 45.0%
GAGAAAAAACCTAGCGCAAG+TGG + chr2_3:55488367-55488386 None:intergenic 45.0%
GGAACAAATAGAGGAGTTGG+AGG - chr2_3:55489672-55489691 Msa0300130:intron 45.0%
! AAATGGTGTACTGGTGGCAT+GGG + chr2_3:55489747-55489766 None:intergenic 45.0%
! AAAATGGTGTACTGGTGGCA+TGG + chr2_3:55489748-55489767 None:intergenic 45.0%
! GGTCTAAAATGGTGTACTGG+TGG + chr2_3:55489753-55489772 None:intergenic 45.0%
TGCATAAACGACTGATCCAC+GGG + chr2_3:55489798-55489817 None:intergenic 45.0%
! TGATGCCAATACGAAGCGTT+AGG + chr2_3:55489888-55489907 None:intergenic 45.0%
! ACGCTTCGTATTGGCATCAA+CGG - chr2_3:55489889-55489908 Msa0300130:intron 45.0%
GAGAAAGACTTATGTGGACC+AGG - chr2_3:55490022-55490041 Msa0300130:intron 45.0%
TGTGACCAAACCCAATTGTG+TGG + chr2_3:55490049-55490068 None:intergenic 45.0%
CTTTGGTTGTGACCACACAA+TGG - chr2_3:55490144-55490163 Msa0300130:intron 45.0%
TTGGTTGTGACCACACAATG+GGG - chr2_3:55490146-55490165 Msa0300130:intron 45.0%
GCCATGTACCAATTAGATCC+CGG - chr2_3:55491097-55491116 Msa0300130:CDS 45.0%
ACCGGGATCTAATTGGTACA+TGG + chr2_3:55491101-55491120 None:intergenic 45.0%
! CAAGCAAGAAAATGACGGGA+TGG + chr2_3:55491387-55491406 None:intergenic 45.0%
!!! GTTTTGGAGAAAGAGAGAGG+AGG + chr2_3:55491421-55491440 None:intergenic 45.0%
CCAAGAGGCAACGGTAAATA+TGG + chr2_3:55491681-55491700 None:intergenic 45.0%
CCATATTTACCGTTGCCTCT+TGG - chr2_3:55491678-55491697 Msa0300130:intron 45.0%
!! CTTCAAGTGCTGGAGCTTTA+AGG + chr2_3:55491704-55491723 None:intergenic 45.0%
CTTAAAGCTCCAGCACTTGA+AGG - chr2_3:55491702-55491721 Msa0300130:intron 45.0%
!! CCTTTTCAAGCACAAGATGG+TGG + chr2_3:55491768-55491787 None:intergenic 45.0%
CCACCATCTTGTGCTTGAAA+AGG - chr2_3:55491765-55491784 Msa0300130:intron 45.0%
! TGTTGGTCTACTAGACGGTA+TGG + chr2_3:55491924-55491943 None:intergenic 45.0%
TCACTCACTCCCATACTTGT+AGG + chr2_3:55492419-55492438 None:intergenic 45.0%
! AACCATGAAAGAGCGTGAGA+TGG + chr2_3:55492651-55492670 None:intergenic 45.0%
!! ATGGTTTTACTACCGGTGGA+TGG - chr2_3:55492665-55492684 Msa0300130:intron 45.0%
TGGTGTTTCGAGCTCACTTT+AGG - chr2_3:55492852-55492871 Msa0300130:five_prime_UTR 45.0%
GGTGAATGAGAACTCTATGG+AGG - chr2_3:55492954-55492973 Msa0300130:five_prime_UTR 45.0%
GTTGAGTCGCTTGATAAGGA+AGG - chr2_3:55493049-55493068 Msa0300130:five_prime_UTR 45.0%
TCGCTTGATAAGGAAGGTTG+AGG - chr2_3:55493055-55493074 Msa0300130:five_prime_UTR 45.0%
GCTTATTGAGATGCCATGTG+TGG - chr2_3:55493157-55493176 Msa0300130:five_prime_UTR 45.0%
! GGTCTTTGATGACAATCCTC+TGG - chr2_3:55493189-55493208 Msa0300130:five_prime_UTR 45.0%
!! AAAAAAAATAAAATCAAAAT+TGG - chr2_3:55487096-55487115 Msa0300130:three_prime_UTR 5.0%
!!! CTATATAATATTATTATTTT+TGG + chr2_3:55487179-55487198 None:intergenic 5.0%
!!! TTAACATTTTTATATATAAA+AGG - chr2_3:55490000-55490019 Msa0300130:intron 5.0%
!!! AAACTATTAAATTTTATTTT+TGG - chr2_3:55491239-55491258 Msa0300130:intron 5.0%
!!! AAAAAAACTAATTTTTTTAA+TGG - chr2_3:55491286-55491305 Msa0300130:intron 5.0%
! TCCCTTGCCGCTTCCTAAAA+AGG - chr2_3:55487308-55487327 Msa0300130:three_prime_UTR 50.0%
!! GCCTTTTTAGGAAGCGGCAA+GGG + chr2_3:55487312-55487331 None:intergenic 50.0%
!! TGCCTTTTTAGGAAGCGGCA+AGG + chr2_3:55487313-55487332 None:intergenic 50.0%
TGCTAGCTAGTAGCTAGGGT+AGG + chr2_3:55487432-55487451 None:intergenic 50.0%
CAACGACGGAGATGTGTTAC+CGG - chr2_3:55487870-55487889 Msa0300130:three_prime_UTR 50.0%
TCTGGGTCCATCTCAAGATC+CGG + chr2_3:55487892-55487911 None:intergenic 50.0%
!! AGATTCTGGTTCGAGTCGTG+TGG - chr2_3:55488053-55488072 Msa0300130:three_prime_UTR 50.0%
! AGGCAATGGATTCGGCACAA+CGG + chr2_3:55488106-55488125 None:intergenic 50.0%
TGTGCCGAATCCATTGCCTA+AGG - chr2_3:55488107-55488126 Msa0300130:three_prime_UTR 50.0%
CCGAATCCATTGCCTAAGGA+AGG - chr2_3:55488111-55488130 Msa0300130:three_prime_UTR 50.0%
GTACAAGCAGTAGAGCAGCT+AGG - chr2_3:55489174-55489193 Msa0300130:CDS 50.0%
AGAGCAGCTAGGTGTGGATA+AGG - chr2_3:55489185-55489204 Msa0300130:CDS 50.0%
AAGCAGCAAGCTGGAGTCAA+AGG - chr2_3:55489637-55489656 Msa0300130:intron 50.0%
! TCATTGGGTTGCACCAACCA+TGG - chr2_3:55489713-55489732 Msa0300130:intron 50.0%
! CATTGGGTTGCACCAACCAT+GGG - chr2_3:55489714-55489733 Msa0300130:intron 50.0%
TGGTGCCCCCATACATGTAA+AGG + chr2_3:55489774-55489793 None:intergenic 50.0%
TAAACGACTGATCCACGGGA+TGG + chr2_3:55489794-55489813 None:intergenic 50.0%
GGCTGGTGAGGCGAATATTT+AGG + chr2_3:55489828-55489847 None:intergenic 50.0%
! CAATACGAAGCGTTAGGAGG+TGG + chr2_3:55489882-55489901 None:intergenic 50.0%
CACCTCCTAACGCTTCGTAT+TGG - chr2_3:55489880-55489899 Msa0300130:intron 50.0%
! TGCCAATACGAAGCGTTAGG+AGG + chr2_3:55489885-55489904 None:intergenic 50.0%
! CGCTTCGTATTGGCATCAAC+GGG - chr2_3:55489890-55489909 Msa0300130:intron 50.0%
TGGACCAGGACCACACAATT+GGG - chr2_3:55490036-55490055 Msa0300130:intron 50.0%
CAAACCCAATTGTGTGGTCC+TGG + chr2_3:55490043-55490062 None:intergenic 50.0%
CAGGACCACACAATTGGGTT+TGG - chr2_3:55490041-55490060 Msa0300130:intron 50.0%
TGTGACCACACAATGGGGTT+TGG - chr2_3:55490151-55490170 Msa0300130:intron 50.0%
! GTTCCTGCAGTTGGTGCATT+TGG + chr2_3:55490791-55490810 None:intergenic 50.0%
AAGCATGGTGTTCCTGCAGT+TGG + chr2_3:55490800-55490819 None:intergenic 50.0%
TCCACAGCCTCTGACAACAA+CGG - chr2_3:55490820-55490839 Msa0300130:intron 50.0%
!! ATTTGGCTCTCCAACCGTTC+CGG - chr2_3:55491057-55491076 Msa0300130:CDS 50.0%
AATTGGTACATGGCATGGGG+TGG + chr2_3:55491091-55491110 None:intergenic 50.0%
CGACAACACCGGGATCTAAT+TGG + chr2_3:55491108-55491127 None:intergenic 50.0%
TCTAAGAGAGGCTGAGGAGA+TGG + chr2_3:55491145-55491164 None:intergenic 50.0%
TGGAAGTCTAAGAGAGGCTG+AGG + chr2_3:55491151-55491170 None:intergenic 50.0%
GCCTCTCTTAGACTTCCATC+CGG - chr2_3:55491153-55491172 Msa0300130:intron 50.0%
ACCGGATGGAAGTCTAAGAG+AGG + chr2_3:55491157-55491176 None:intergenic 50.0%
TGGAGAAAGAGAGAGGAGGA+TGG + chr2_3:55491417-55491436 None:intergenic 50.0%
!! GCTTTAAGGCCAAGAGGCAA+CGG + chr2_3:55491690-55491709 None:intergenic 50.0%
! TCCAGCACTTGAAGGTGTGA+TGG - chr2_3:55491710-55491729 Msa0300130:intron 50.0%
! CCAGCACTTGAAGGTGTGAT+GGG - chr2_3:55491711-55491730 Msa0300130:intron 50.0%
GACCATCTCACGCTCTTTCA+TGG - chr2_3:55492646-55492665 Msa0300130:intron 50.0%
GGAGGTTGAGTCGCTTGATA+AGG - chr2_3:55493045-55493064 Msa0300130:five_prime_UTR 50.0%
ATTCTCCCTCAGCAGCAGTG+AGG - chr2_3:55487924-55487943 Msa0300130:three_prime_UTR 55.0%
CGATTCCTCACTGCTGCTGA+GGG + chr2_3:55487932-55487951 None:intergenic 55.0%
CCTCAGCAGCAGTGAGGAAT+CGG - chr2_3:55487930-55487949 Msa0300130:three_prime_UTR 55.0%
GCGCAATAACCACTTGCGCT+AGG - chr2_3:55488355-55488374 Msa0300130:three_prime_UTR 55.0%
AGCAGTAGAGCAGCTAGGTG+TGG - chr2_3:55489179-55489198 Msa0300130:CDS 55.0%
GAAGGTGGCTGGCGATGTTA+TGG + chr2_3:55489260-55489279 None:intergenic 55.0%
GTGAAGCTGAAGCAGCAAGC+TGG - chr2_3:55489628-55489647 Msa0300130:intron 55.0%
CAGCAAGCTGGAGTCAAAGG+AGG - chr2_3:55489640-55489659 Msa0300130:intron 55.0%
ATGGGAGGGAAACCCATGGT+TGG + chr2_3:55489729-55489748 None:intergenic 55.0%
ATATTCGCCTCACCAGCCAC+CGG - chr2_3:55489830-55489849 Msa0300130:intron 55.0%
GTGGACCAGGACCACACAAT+TGG - chr2_3:55490035-55490054 Msa0300130:intron 55.0%
AGGGACCAAACCCCATTGTG+TGG + chr2_3:55490159-55490178 None:intergenic 55.0%
GCTCCAAATGCACCAACTGC+AGG - chr2_3:55490785-55490804 Msa0300130:intron 55.0%
GTCAGAGGCTGTGGAAAGCA+TGG + chr2_3:55490815-55490834 None:intergenic 55.0%
ACCGTTGTTGTCAGAGGCTG+TGG + chr2_3:55490824-55490843 None:intergenic 55.0%
!! TTTGGCTCTCCAACCGTTCC+GGG - chr2_3:55491058-55491077 Msa0300130:CDS 55.0%
AGGCTGAGGAGATGGTTGAC+CGG + chr2_3:55491137-55491156 None:intergenic 55.0%
!! GCTGGAGCTTTAAGGCCAAG+AGG + chr2_3:55491696-55491715 None:intergenic 55.0%
CCCATCACACCTTCAAGTGC+TGG + chr2_3:55491714-55491733 None:intergenic 55.0%
AAGTGAGCTCGAAACGCCAG+AGG + chr2_3:55493208-55493227 None:intergenic 55.0%
!! GGAAGCGGCAAGGGAGTGTT+TGG + chr2_3:55487303-55487322 None:intergenic 60.0%
CCGATTCCTCACTGCTGCTG+AGG + chr2_3:55487933-55487952 None:intergenic 60.0%
!! TGGCGATGTTATGGCGGGTG+AGG + chr2_3:55489251-55489270 None:intergenic 60.0%
GTGGCTGGCGATGTTATGGC+GGG + chr2_3:55489256-55489275 None:intergenic 60.0%
GGTGGCTGGCGATGTTATGG+CGG + chr2_3:55489257-55489276 None:intergenic 60.0%
TGGCATGGGAGGGAAACCCA+TGG + chr2_3:55489733-55489752 None:intergenic 60.0%
! GGTGTACTGGTGGCATGGGA+GGG + chr2_3:55489743-55489762 None:intergenic 60.0%
! TGGTGTACTGGTGGCATGGG+AGG + chr2_3:55489744-55489763 None:intergenic 60.0%
! TCACCAGCCACCGGCTAACT+GGG - chr2_3:55489839-55489858 Msa0300130:intron 60.0%
! GAAGCGTTAGGAGGTGGAGC+CGG + chr2_3:55489876-55489895 None:intergenic 60.0%
TGGTACATGGCATGGGGTGG+TGG + chr2_3:55491088-55491107 None:intergenic 60.0%
TGAGGAGATGGTTGACCGGC+GGG + chr2_3:55491133-55491152 None:intergenic 60.0%
CTGAGGAGATGGTTGACCGG+CGG + chr2_3:55491134-55491153 None:intergenic 60.0%
!! TGTATGGGGGCACCATCCCG+TGG - chr2_3:55489779-55489798 Msa0300130:intron 65.0%
CAGTTAGCCGGTGGCTGGTG+AGG + chr2_3:55489840-55489859 None:intergenic 65.0%
! CTCACCAGCCACCGGCTAAC+TGG - chr2_3:55489838-55489857 Msa0300130:intron 65.0%
GGTGGAATGCCCGGAACGGT+TGG + chr2_3:55491070-55491089 None:intergenic 65.0%
!! GGGTGGTGGAATGCCCGGAA+CGG + chr2_3:55491074-55491093 None:intergenic 65.0%
!! GCATGGGGTGGTGGAATGCC+CGG + chr2_3:55491079-55491098 None:intergenic 65.0%
GAGGAGATGGTTGACCGGCG+GGG + chr2_3:55491132-55491151 None:intergenic 65.0%
GTGCCCAGTTAGCCGGTGGC+TGG + chr2_3:55489845-55489864 None:intergenic 70.0%
GCAGGTGCCCAGTTAGCCGG+TGG + chr2_3:55489849-55489868 None:intergenic 70.0%
CGCGCAGGTGCCCAGTTAGC+CGG + chr2_3:55489852-55489871 None:intergenic 70.0%
CGGCTAACTGGGCACCTGCG+CGG - chr2_3:55489850-55489869 Msa0300130:intron 70.0%
TAACTGGGCACCTGCGCGGC+CGG - chr2_3:55489854-55489873 Msa0300130:intron 70.0%
ACCGGCGGGGACGACAACAC+CGG + chr2_3:55491119-55491138 None:intergenic 70.0%
CCGGCGGGGACGACAACACC+GGG + chr2_3:55491118-55491137 None:intergenic 75.0%
!! CCCGGTGTTGTCGTCCCCGC+CGG - chr2_3:55491115-55491134 Msa0300130:CDS 75.0%
! GGAGGTGGAGCCGGCCGCGC+AGG + chr2_3:55489867-55489886 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 55487003 55493293 55487003 ID=Msa0300130;Name=Msa0300130
chr2_3 mRNA 55487003 55493293 55487003 ID=Msa0300130-mRNA-1;Parent=Msa0300130;Name=Msa0300130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=491|1|1|1|0.83|0.71|7|1511|423
chr2_3 exon 55487003 55488663 55487003 ID=Msa0300130-mRNA-1:exon:17768;Parent=Msa0300130-mRNA-1
chr2_3 exon 55489122 55489241 55489122 ID=Msa0300130-mRNA-1:exon:17767;Parent=Msa0300130-mRNA-1
chr2_3 exon 55489455 55489511 55489455 ID=Msa0300130-mRNA-1:exon:17766;Parent=Msa0300130-mRNA-1
chr2_3 exon 55490385 55490702 55490385 ID=Msa0300130-mRNA-1:exon:17765;Parent=Msa0300130-mRNA-1
chr2_3 exon 55491015 55491155 55491015 ID=Msa0300130-mRNA-1:exon:17764;Parent=Msa0300130-mRNA-1
chr2_3 exon 55492099 55492625 55492099 ID=Msa0300130-mRNA-1:exon:17763;Parent=Msa0300130-mRNA-1
chr2_3 exon 55492844 55493293 55492844 ID=Msa0300130-mRNA-1:exon:17762;Parent=Msa0300130-mRNA-1
chr2_3 five_prime_UTR 55492844 55493293 55492844 ID=Msa0300130-mRNA-1:five_prime_utr;Parent=Msa0300130-mRNA-1
chr2_3 five_prime_UTR 55492585 55492625 55492585 ID=Msa0300130-mRNA-1:five_prime_utr;Parent=Msa0300130-mRNA-1
chr2_3 CDS 55492099 55492584 55492099 ID=Msa0300130-mRNA-1:cds;Parent=Msa0300130-mRNA-1
chr2_3 CDS 55491015 55491155 55491015 ID=Msa0300130-mRNA-1:cds;Parent=Msa0300130-mRNA-1
chr2_3 CDS 55490385 55490702 55490385 ID=Msa0300130-mRNA-1:cds;Parent=Msa0300130-mRNA-1
chr2_3 CDS 55489455 55489511 55489455 ID=Msa0300130-mRNA-1:cds;Parent=Msa0300130-mRNA-1
chr2_3 CDS 55489122 55489241 55489122 ID=Msa0300130-mRNA-1:cds;Parent=Msa0300130-mRNA-1
chr2_3 CDS 55488514 55488663 55488514 ID=Msa0300130-mRNA-1:cds;Parent=Msa0300130-mRNA-1
chr2_3 three_prime_UTR 55487003 55488513 55487003 ID=Msa0300130-mRNA-1:three_prime_utr;Parent=Msa0300130-mRNA-1
Gene Sequence

>Msa0300130

ATGCTAGCAGTAGCACCATTGAGTAGCATAAGAGATGAAAGCCAAAGAGAAATGGAGGAGAATTTATCAATTGAGACATGTGACTTTGCTGATCTTTCTGAAGGGAACTTATTGGAAAGCATCAATTTCGAATTCGATGATGATTTCTTCGTATGCTTCAACGACGGAGATGTGTTACCGGATCTTGAGATGGACCCAGAAATGCTTGCTGAATTCTCCCTCAGCAGCAGTGAGGAATCGGATATAAATTCATCAGGCGCAAATAGCAAATCTTGTAATGATGGGAATATGGTTAGTATTGAGAGAAAATTACAAGATGAAGAGAAAGTAGTTTCTTCTTCAGATTCTGGTTCGAGTCGTGTGGAAGAGATAATTAGCAAAAGAGATGAATCCGTTGTGCCGAATCCATTGCCTAAGGAAGGTGAGAAAGGAAGAAAATCATCATCTCAATCAAAGAATAACCCTCATGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCACAGAAGATTCGTACAAGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTGGAAATTATGGGAATTGACTGCCTCACCCGCCATAACATCGCCAGCCACCTTCAAAAATATAGATCGCATAGGAAACATTTGTTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTTTGGAACAAATAGAGGAGTTGGAGGAAAAAGAGATATTGTGAATCATTGGGTTGCACCAACCATGGGTTTCCCTCCCATGCCACCAGTACACCATTTTAGACCTTTACATGTATGGGGGCACCATCCCGTGGATCAGTCGTTTATGCATATGTGGCCTAAATATTCGCCTCACCAGCCACCGGCTAACTGGGCACCTGCGCGGCCGGCTCCACCTCCTAACGCTTCGTATTGGCATCAACGGGCTCCAAATGCACCAACTGCAGGAACACCATGCTTTCCACAGCCTCTGACAACAACGAGATTTGGCTCTCCAACCGTTCCGGGCATTCCACCACCCCATGCCATGTACCAATTAGATCCCGGTGTTGTCGTCCCCGCCGGTCAACCATCTCCTCAGCCTCTCTTAGACTTCCATCCGTCAAAGGAGAGCATCGACGCAGCTATTAGTGATGTATTATCAAAACCATATTTACCGTTGCCTCTTGGCCTTAAAGCTCCAGCACTTGAAGGTGTGATGGGTGAATTACAGAAACAAGGAATTCCAAATATTCCACCATCTTGTGCTTGA
Protein sequence

>Msa0300130

MLAVAPLSSIRDESQREMEENLSIETCDFADLSEGNLLESINFEFDDDFFVCFNDGDVLPDLEMDPEMLAEFSLSSSEESDINSSGANSKSCNDGNMVSIERKLQDEEKVVSSSDSGSSRVEEIISKRDESVVPNPLPKEGEKGRKSSSQSKNNPHGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGTNRGVGGKRDIVNHWVAPTMGFPPMPPVHHFRPLHVWGHHPVDQSFMHMWPKYSPHQPPANWAPARPAPPPNASYWHQRAPNAPTAGTPCFPQPLTTTRFGSPTVPGIPPPHAMYQLDPGVVVPAGQPSPQPLLDFHPSKESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQKQGIPNIPPSCA*