Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363220 | XP_013447079.1 | 98.479 | 263 | 4 | 0 | 1 | 263 | 1 | 263 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363220 | B7FIY1 | 98.479 | 263 | 4 | 0 | 1 | 263 | 1 | 263 | 0.0 | 531 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1257870 | Msa1363220 | 0.816738 | 4.737856e-52 | -8.615850e-47 |
| Msa1258950 | Msa1363220 | -0.800313 | 1.528131e-48 | -8.615850e-47 |
| Msa1080790 | Msa1363220 | -0.810560 | 1.084775e-50 | -8.615850e-47 |
| Msa1085960 | Msa1363220 | 0.919794 | 2.882075e-87 | -8.615850e-47 |
| Msa1118930 | Msa1363220 | -0.813843 | 2.084193e-51 | -8.615850e-47 |
| Msa1207670 | Msa1363220 | 0.849953 | 2.321570e-60 | -8.615850e-47 |
| Msa0526450 | Msa1363220 | 0.870165 | 1.792888e-66 | -8.615850e-47 |
| Msa0563140 | Msa1363220 | -0.814519 | 1.478702e-51 | -8.615850e-47 |
| Msa0576990 | Msa1363220 | 0.883835 | 3.203947e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363220 | MtrunA17_Chr8g0387261 | 98.479 | 263 | 4 | 0 | 1 | 263 | 1 | 263 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363220 | AT4G23470.1 | 72.308 | 260 | 51 | 5 | 4 | 263 | 3 | 241 | 2.77e-134 | 379 |
| Msa1363220 | AT1G63830.1 | 77.500 | 240 | 42 | 4 | 2 | 241 | 3 | 230 | 3.24e-132 | 373 |
| Msa1363220 | AT1G63830.2 | 77.500 | 240 | 42 | 4 | 2 | 241 | 3 | 230 | 3.24e-132 | 373 |
| Msa1363220 | AT1G63830.3 | 77.500 | 240 | 42 | 4 | 2 | 241 | 3 | 230 | 3.24e-132 | 373 |
| Msa1363220 | AT4G23470.3 | 77.273 | 220 | 43 | 2 | 4 | 223 | 3 | 215 | 2.97e-127 | 361 |
| Msa1363220 | AT5G41390.1 | 77.778 | 216 | 47 | 1 | 3 | 218 | 4 | 218 | 1.81e-124 | 355 |
| Msa1363220 | AT1G63830.5 | 79.897 | 194 | 27 | 4 | 48 | 241 | 1 | 182 | 1.12e-104 | 301 |
| Msa1363220 | AT1G63830.4 | 81.875 | 160 | 29 | 0 | 2 | 161 | 3 | 162 | 1.61e-97 | 283 |
| Msa1363220 | AT4G23470.2 | 71.845 | 206 | 37 | 5 | 58 | 263 | 1 | 185 | 2.77e-97 | 283 |
| Msa1363220 | AT5G41390.2 | 80.124 | 161 | 31 | 1 | 58 | 218 | 1 | 160 | 1.18e-91 | 270 |
| Msa1363220 | AT4G23470.4 | 78.313 | 166 | 29 | 2 | 58 | 223 | 1 | 159 | 1.90e-90 | 265 |
Find 131 sgRNAs with CRISPR-Local
Find 502 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCAAAGTCTTTATATTAT+TGG | 0.180155 | tig0018036:-7675 | None:intergenic |
| CTATTATTGCACATATTTCT+TGG | 0.218807 | tig0018036:-14091 | None:intergenic |
| AGACACCTATTGATTGTTTC+AGG | 0.231749 | tig0018036:+13768 | Msa1363220:three_prime_UTR |
| AGCGCGTGGGTGGGGTGGGG+TGG | 0.240516 | tig0018036:-7739 | None:intergenic |
| GCGATTTAATGTGTGATATT+AGG | 0.248116 | tig0018036:+14048 | Msa1363220:three_prime_UTR |
| TTTGACTTCAATTTATATAT+TGG | 0.254913 | tig0018036:+13957 | Msa1363220:three_prime_UTR |
| GACAAGCGTGACGGGAAGTT+TGG | 0.287119 | tig0018036:+13467 | Msa1363220:CDS |
| TGTGGGAAGTGAGGAAATTT+CGG | 0.298616 | tig0018036:+13183 | Msa1363220:CDS |
| CCAGCATATGGGCAGAATTA+TGG | 0.301754 | tig0018036:+13578 | Msa1363220:CDS |
| CCCTGAGCTGGTGGTTGGGC+AGG | 0.324739 | tig0018036:-13608 | None:intergenic |
| TGCAACTCCGGCAGAATTAC+CGG | 0.334750 | tig0018036:+7994 | Msa1363220:CDS |
| AGGCTCACAGCCGCCAAGTT+TGG | 0.341230 | tig0018036:+14068 | Msa1363220:three_prime_UTR |
| ACCTTGACATATCATCATAA+AGG | 0.341368 | tig0018036:-9446 | None:intergenic |
| TTCTCAAATACTATCTTGTT+TGG | 0.350032 | tig0018036:+13210 | Msa1363220:CDS |
| GGCAGAATTACCGGAATCTA+TGG | 0.355115 | tig0018036:+8003 | Msa1363220:CDS |
| ACCTGCCCAACCACCAGCTC+AGG | 0.357224 | tig0018036:+13607 | Msa1363220:CDS |
| TTGTTTGGTTATGTGCAATA+TGG | 0.357347 | tig0018036:+13993 | Msa1363220:three_prime_UTR |
| GAAAGCGCGTGGGTGGGGTG+GGG | 0.372529 | tig0018036:-7742 | None:intergenic |
| AGAAAGCGCGTGGGTGGGGT+GGG | 0.375901 | tig0018036:-7743 | None:intergenic |
| GGTGTTTATATAATCTTGTT+TGG | 0.382421 | tig0018036:+13978 | Msa1363220:three_prime_UTR |
| TCTCTCAGATCTATCCATCT+AGG | 0.387277 | tig0018036:+7899 | Msa1363220:intron |
| GAAAATCAAATCAAATGAAA+TGG | 0.391155 | tig0018036:-7710 | None:intergenic |
| TCAGTCAGAAATCCAAACTT+AGG | 0.399397 | tig0018036:-13898 | None:intergenic |
| GACTCAGCACAAGGTTGAAA+TGG | 0.402052 | tig0018036:+13445 | Msa1363220:intron |
| GCGCGTGGGTGGGGTGGGGT+GGG | 0.403093 | tig0018036:-7738 | None:intergenic |
| ACATATTTCTTGGCCAAACT+TGG | 0.405256 | tig0018036:-14081 | None:intergenic |
| AACCAGTTCCTCCTTCTGTT+GGG | 0.408203 | tig0018036:+13543 | Msa1363220:CDS |
| CAACCAGTTCCTCCTTCTGT+TGG | 0.416484 | tig0018036:+13542 | Msa1363220:CDS |
| ACAAGCGTGACGGGAAGTTT+GGG | 0.424681 | tig0018036:+13468 | Msa1363220:CDS |
| TGAGCTGGTGGTTGGGCAGG+TGG | 0.425407 | tig0018036:-13605 | None:intergenic |
| TCAGTACAGAGGCAAAATTC+AGG | 0.426098 | tig0018036:-9605 | None:intergenic |
| TATGCACCACAACCAGCATA+TGG | 0.434907 | tig0018036:+13566 | Msa1363220:CDS |
| GGAGAAGTAGTAACCCTAGA+TGG | 0.437950 | tig0018036:-7913 | None:intergenic |
| CCTTGACATATCATCATAAA+GGG | 0.442804 | tig0018036:-9445 | None:intergenic |
| AGAGAGAAAGCGCGTGGGTG+GGG | 0.445983 | tig0018036:-7747 | None:intergenic |
| ATAGCCCTGAGCTGGTGGTT+GGG | 0.448583 | tig0018036:-13612 | None:intergenic |
| GATAGCCCTGAGCTGGTGGT+TGG | 0.453696 | tig0018036:-13613 | None:intergenic |
| ATGCGGGACATTTGCTGTAC+AGG | 0.454843 | tig0018036:-13515 | None:intergenic |
| TTCCTCACTTCCCACAATCA+TGG | 0.455138 | tig0018036:-13176 | None:intergenic |
| ATATGCATGCAACTTGGTTA+AGG | 0.460046 | tig0018036:-13141 | None:intergenic |
| CGGTTCCTGAAACAATCAAT+AGG | 0.461457 | tig0018036:-13773 | None:intergenic |
| CAGTCAGAAATCCAAACTTA+GGG | 0.462224 | tig0018036:-13897 | None:intergenic |
| ACTCCCACTTGGTAAACGTT+GGG | 0.463735 | tig0018036:+7525 | None:intergenic |
| GAGAAAGCGCGTGGGTGGGG+TGG | 0.471365 | tig0018036:-7744 | None:intergenic |
| TGAAGTCAAAAGTATAAGAA+TGG | 0.473824 | tig0018036:-13944 | None:intergenic |
| TTCTCCACACCTACCACTGC+AGG | 0.479185 | tig0018036:-9573 | None:intergenic |
| GTCGTTTGTAAGAGTGAGTC+AGG | 0.481556 | tig0018036:+7591 | Msa1363220:five_prime_UTR |
| TACCCAACAGAAGGAGGAAC+TGG | 0.482353 | tig0018036:-13545 | None:intergenic |
| GGCACTGCCATCACTGGTTG+CGG | 0.482881 | tig0018036:-13491 | None:intergenic |
| CTCTATTGTTGCCATGATTG+TGG | 0.490690 | tig0018036:+13165 | Msa1363220:CDS |
| GATCAGTGTGCCATAGATTC+CGG | 0.496322 | tig0018036:-8013 | None:intergenic |
| TCCAGATACACATGCTGTGC+TGG | 0.497369 | tig0018036:+9542 | Msa1363220:intron |
| TCTTACAAACGACGCATCGT+AGG | 0.503435 | tig0018036:-7581 | None:intergenic |
| TTGAAATGGACAAGCGTGAC+GGG | 0.503821 | tig0018036:+13459 | Msa1363220:CDS |
| TATTTCTTGGCCAAACTTGG+CGG | 0.506673 | tig0018036:-14078 | None:intergenic |
| TGTTGTGGAGGATAAGCAGC+AGG | 0.509075 | tig0018036:-13653 | None:intergenic |
| CCTTGTGGAGGATAAGCAGC+AGG | 0.512049 | tig0018036:-13686 | None:intergenic |
| CTCTCAGATCTATCCATCTA+GGG | 0.514583 | tig0018036:+7900 | Msa1363220:intron |
| TTCTGCCCATATGCTGGTTG+TGG | 0.520583 | tig0018036:-13572 | None:intergenic |
| TCTATTGTTGCCATGATTGT+GGG | 0.521129 | tig0018036:+13166 | Msa1363220:CDS |
| CCATAATTCTGCCCATATGC+TGG | 0.523656 | tig0018036:-13578 | None:intergenic |
| TAGGGTTACTACTTCTCCTC+CGG | 0.526134 | tig0018036:+7918 | Msa1363220:five_prime_UTR |
| AGAGAGAGAAAGCGCGTGGG+TGG | 0.527835 | tig0018036:-7749 | None:intergenic |
| GCTCAGGGCTATCCCGCTAC+TGG | 0.528162 | tig0018036:+13623 | Msa1363220:CDS |
| TGATCTCATGAGAACTATCC+AGG | 0.529386 | tig0018036:+8031 | Msa1363220:CDS |
| GTAGCGGGATAGCCCTGAGC+TGG | 0.535476 | tig0018036:-13620 | None:intergenic |
| ACAGGAGGCACTGCCATCAC+TGG | 0.536277 | tig0018036:-13497 | None:intergenic |
| TACTCCCACTTGGTAAACGT+TGG | 0.539005 | tig0018036:+7524 | None:intergenic |
| AGGAACTGGTTGATCAATGC+GGG | 0.542027 | tig0018036:-13531 | None:intergenic |
| AATATCACACATTAAATCGC+GGG | 0.542534 | tig0018036:-14045 | None:intergenic |
| AAAGTCTTTATATTATTGGC+CGG | 0.542798 | tig0018036:-7671 | None:intergenic |
| GTTTGGGCCGCAACCAGTGA+TGG | 0.543967 | tig0018036:+13484 | Msa1363220:CDS |
| TCTCTGCTTTGGAAATTCAG+TGG | 0.544883 | tig0018036:+12789 | Msa1363220:CDS |
| TAGGGTGTGTGCGTGCATGC+AGG | 0.544903 | tig0018036:+13339 | Msa1363220:intron |
| CAGATTGCTGCTTATCCTTG+TGG | 0.547142 | tig0018036:+8169 | Msa1363220:intron |
| TTCTTCTTCTTCTTTGCCGG+AGG | 0.548168 | tig0018036:-7934 | None:intergenic |
| AAATTTAGAGCAGTTTGTGT+TGG | 0.555860 | tig0018036:+13742 | Msa1363220:three_prime_UTR |
| GTTACATGCCCTGCAGTGGT+AGG | 0.556389 | tig0018036:+9564 | Msa1363220:CDS |
| TAGAGAATATGCATGCAACT+TGG | 0.557546 | tig0018036:-13147 | None:intergenic |
| ATCTTGAGAAAATGCAACTC+CGG | 0.559310 | tig0018036:+7982 | Msa1363220:CDS |
| CTTACAAACGACGCATCGTA+GGG | 0.561411 | tig0018036:-7580 | None:intergenic |
| GAGAGAGAAAGCGCGTGGGT+GGG | 0.567611 | tig0018036:-7748 | None:intergenic |
| TATGAACTATTGTAACTGCC+AGG | 0.573029 | tig0018036:+7624 | Msa1363220:five_prime_UTR |
| ATAGATTCCGGTAATTCTGC+CGG | 0.573475 | tig0018036:-8001 | None:intergenic |
| CCTGCCCAACCACCAGCTCA+GGG | 0.573738 | tig0018036:+13608 | Msa1363220:CDS |
| AGAGTGAGTCAGGTCAGCTA+TGG | 0.577970 | tig0018036:+7601 | Msa1363220:five_prime_UTR |
| ATCACCTAGAATAACCAGAA+GGG | 0.579600 | tig0018036:-13715 | None:intergenic |
| ATGCACCACAACCAGCATAT+GGG | 0.582709 | tig0018036:+13567 | Msa1363220:CDS |
| GCGGGATAGCCCTGAGCTGG+TGG | 0.587686 | tig0018036:-13617 | None:intergenic |
| GTTGTGGAGGATAAGCAGCA+GGG | 0.593369 | tig0018036:-13652 | None:intergenic |
| GCTTACATGGAGTATCGACC+TGG | 0.596144 | tig0018036:-8049 | None:intergenic |
| CTTGTGGAGGATAAGCAGCA+GGG | 0.596976 | tig0018036:-13685 | None:intergenic |
| ATTGCTGCTTATCCTTGTGG+TGG | 0.597371 | tig0018036:+8172 | Msa1363220:CDS |
| AGAAAGAGAGAGAAAGCGCG+TGG | 0.604158 | tig0018036:-7753 | None:intergenic |
| AAAACTAAACTACTCCCACT+TGG | 0.606103 | tig0018036:+7514 | None:intergenic |
| CCCTTTATGATGATATGTCA+AGG | 0.608347 | tig0018036:+9445 | Msa1363220:CDS |
| CGAAGCAAGTATGATACACA+TGG | 0.611216 | tig0018036:-9414 | None:intergenic |
| TCACCTAGAATAACCAGAAG+GGG | 0.621429 | tig0018036:-13714 | None:intergenic |
| TTATTTGCAGACTCAGCACA+AGG | 0.625897 | tig0018036:+13436 | Msa1363220:intron |
| CGGTGTTGAGTAGAAGACAC+TGG | 0.627767 | tig0018036:-7777 | None:intergenic |
| GCTGGTTACATGCCCTGCAG+TGG | 0.628209 | tig0018036:+9560 | Msa1363220:CDS |
| CCTGCTGCTTATCCTCCACA+AGG | 0.630522 | tig0018036:+13686 | Msa1363220:CDS |
| AATCCCAACGTTTACCAAGT+GGG | 0.633212 | tig0018036:-7528 | None:intergenic |
| TAATATCACACATTAAATCG+CGG | 0.638090 | tig0018036:-14046 | None:intergenic |
| ATGCCCTGCAGTGGTAGGTG+TGG | 0.638395 | tig0018036:+9569 | Msa1363220:CDS |
| GAAAGAGAGAGAAAGCGCGT+GGG | 0.640039 | tig0018036:-7752 | None:intergenic |
| GTCAGAAATCCAAACTTAGG+GGG | 0.640246 | tig0018036:-13895 | None:intergenic |
| TGTGGTGCATACCCAACAGA+AGG | 0.640639 | tig0018036:-13554 | None:intergenic |
| TATCACCTAGAATAACCAGA+AGG | 0.641227 | tig0018036:-13716 | None:intergenic |
| GGGAAGTGAGGAAATTTCGG+AGG | 0.641644 | tig0018036:+13186 | Msa1363220:CDS |
| TTGCAACAGAAAGCGAGTTG+AGG | 0.642740 | tig0018036:-12812 | None:intergenic |
| CGGGACATTTGCTGTACAGG+AGG | 0.642937 | tig0018036:-13512 | None:intergenic |
| TCTCCACACCTACCACTGCA+GGG | 0.646565 | tig0018036:-9572 | None:intergenic |
| TGCCATGATTGTGGGAAGTG+AGG | 0.647664 | tig0018036:+13174 | Msa1363220:CDS |
| GCTGCTTATCCTCCACAACA+AGG | 0.651296 | tig0018036:+13656 | Msa1363220:CDS |
| AGTCTTACGAGCAGTAAACA+AGG | 0.652877 | tig0018036:-13237 | None:intergenic |
| GGTGCATACCCAACAGAAGG+AGG | 0.662450 | tig0018036:-13551 | None:intergenic |
| TTGTGGAGGATAAGCAGCAG+GGG | 0.664484 | tig0018036:-13684 | None:intergenic |
| GTTGAAATGGACAAGCGTGA+CGG | 0.665093 | tig0018036:+13458 | Msa1363220:CDS |
| TTGTGGAGGATAAGCAGCAG+GGG | 0.675822 | tig0018036:-13651 | None:intergenic |
| TAATCCCAACGTTTACCAAG+TGG | 0.676713 | tig0018036:-7529 | None:intergenic |
| CACCTAGAATAACCAGAAGG+GGG | 0.685790 | tig0018036:-13713 | None:intergenic |
| GTTTATATACCTCAGTACAG+AGG | 0.692939 | tig0018036:-9616 | None:intergenic |
| AGTCAGAAATCCAAACTTAG+GGG | 0.693770 | tig0018036:-13896 | None:intergenic |
| TACGAAATTGAAGAAAACAA+CGG | 0.696555 | tig0018036:-13793 | None:intergenic |
| TGTGGAGGATAAGCAGCAGG+GGG | 0.703339 | tig0018036:-13650 | None:intergenic |
| TGTGGAGGATAAGCAGCAGG+GGG | 0.704394 | tig0018036:-13683 | None:intergenic |
| ATCAAGCAGTCATATGTGTG+TGG | 0.708124 | tig0018036:+13829 | Msa1363220:three_prime_UTR |
| GTGGAGGATAAGCAGCAGGG+GGG | 0.717882 | tig0018036:-13649 | None:intergenic |
| ATGGATGACATACCACCACA+AGG | 0.728919 | tig0018036:-8184 | None:intergenic |
| GAGGAACTGGTTGATCAATG+CGG | 0.734048 | tig0018036:-13532 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATTAATGATAGAAA+TGG | - | tig0018036:8118-8137 | None:intergenic | 10.0% |
| !!! | ATCAATAAAAAAAAGTATTT+TGG | - | tig0018036:13073-13092 | None:intergenic | 10.0% |
| !!! | CAATAAAAATTGAAAGTATT+TGG | - | tig0018036:10585-10604 | None:intergenic | 15.0% |
| !!! | CAAATACTTTCAATTTTTAT+TGG | + | tig0018036:10583-10602 | Msa1363220:intron | 15.0% |
| !! | TATATATATTGAAGAGAAAA+GGG | - | tig0018036:10830-10849 | None:intergenic | 15.0% |
| !! | ACTATAAGGAAATTTAAAAA+CGG | - | tig0018036:11773-11792 | None:intergenic | 15.0% |
| !!! | AACCTTTTTTTTTTCATTTT+AGG | + | tig0018036:12239-12258 | Msa1363220:intron | 15.0% |
| !! | AACCTAAAATGAAAAAAAAA+AGG | - | tig0018036:12244-12263 | None:intergenic | 15.0% |
| !! | TATTTGAATATAGTTGTAAA+AGG | + | tig0018036:12334-12353 | Msa1363220:intron | 15.0% |
| !!! | ATATGCAATTTTTTTGTTTA+GGG | + | tig0018036:12984-13003 | Msa1363220:intron | 15.0% |
| !!! | ATATGCAATTTTTTTGTTTA+GGG | + | tig0018036:12984-13003 | Msa1363220:intron | 15.0% |
| !!! | TTTGACTTCAATTTATATAT+TGG | + | tig0018036:13957-13976 | Msa1363220:three_prime_UTR | 15.0% |
| !!! | TGAAATGGAATTTTTGAATA+AGG | - | tig0018036:7698-7717 | None:intergenic | 20.0% |
| !! | GAAAATCAAATCAAATGAAA+TGG | - | tig0018036:7713-7732 | None:intergenic | 20.0% |
| !! | GAAAATGAAAATAACGAAAT+AGG | - | tig0018036:7851-7870 | None:intergenic | 20.0% |
| !! | TGAAAAACACAATAAAATGT+TGG | + | tig0018036:8608-8627 | Msa1363220:intron | 20.0% |
| !! | GTAACAATCAATATAAATAC+AGG | - | tig0018036:8799-8818 | None:intergenic | 20.0% |
| !! | CTATTAGGAAAATAAGTAAT+AGG | - | tig0018036:9361-9380 | None:intergenic | 20.0% |
| !! | CAGAACATTAAATTACTATT+AGG | - | tig0018036:9376-9395 | None:intergenic | 20.0% |
| !! | AAAGTCATATAATATGACTA+GGG | + | tig0018036:9789-9808 | Msa1363220:intron | 20.0% |
| !! | AGAAAGAAAATACATGTATA+GGG | + | tig0018036:9825-9844 | Msa1363220:intron | 20.0% |
| !!! | CTGTTTTTATTGTTGTATTT+GGG | + | tig0018036:9901-9920 | Msa1363220:intron | 20.0% |
| !!! | GATCTATACTTTTATTACTA+TGG | + | tig0018036:10041-10060 | Msa1363220:intron | 20.0% |
| !! | ATATATATTGAAGAGAAAAG+GGG | - | tig0018036:10829-10848 | None:intergenic | 20.0% |
| !! | CTATATATATTGAAGAGAAA+AGG | - | tig0018036:10831-10850 | None:intergenic | 20.0% |
| !!! | AGTATATCCTTTGAAATTAT+AGG | + | tig0018036:11740-11759 | Msa1363220:intron | 20.0% |
| !!! | GTATATCCTTTGAAATTATA+GGG | + | tig0018036:11741-11760 | Msa1363220:intron | 20.0% |
| !!! | TTTAAAACTTCTATCGTATT+AGG | + | tig0018036:11877-11896 | Msa1363220:intron | 20.0% |
| !! | ACCAAGATTTAATATTTGAA+AGG | + | tig0018036:11934-11953 | Msa1363220:intron | 20.0% |
| !! | TCCTTTCAAATATTAAATCT+TGG | - | tig0018036:11938-11957 | None:intergenic | 20.0% |
| !!! | ATTTAGTTCATTATCAACAA+TGG | - | tig0018036:12109-12128 | None:intergenic | 20.0% |
| !! | ATTTATTTCATGATCAAATG+AGG | + | tig0018036:12130-12149 | Msa1363220:intron | 20.0% |
| !! | TAAATACTATAGTTGAACAA+CGG | - | tig0018036:12220-12239 | None:intergenic | 20.0% |
| !!! | CTATAAGTGAAACAATTTTT+TGG | + | tig0018036:12366-12385 | Msa1363220:intron | 20.0% |
| !! | TATGAATGAAATAAAGAGAT+GGG | - | tig0018036:12906-12925 | None:intergenic | 20.0% |
| !!! | CATATGCAATTTTTTTGTTT+AGG | + | tig0018036:12983-13002 | Msa1363220:intron | 20.0% |
| !!! | CATATGCAATTTTTTTGTTT+AGG | + | tig0018036:12983-13002 | Msa1363220:intron | 20.0% |
| !!! | TTATGTTTCTTTTGTTTGTA+GGG | + | tig0018036:13321-13340 | Msa1363220:intron | 20.0% |
| ! | AAAGTCTTTATATTATTGGC+CGG | - | tig0018036:7674-7693 | None:intergenic | 25.0% |
| ! | AGGCAAAGTCTTTATATTAT+TGG | - | tig0018036:7678-7697 | None:intergenic | 25.0% |
| ! | TTGAATAACTGTTTGCTTAA+TGG | + | tig0018036:8359-8378 | Msa1363220:intron | 25.0% |
| !! | TGATTGTTACTTGATTTAGT+CGG | + | tig0018036:8809-8828 | Msa1363220:intron | 25.0% |
| ! | ATACATATCACACAAACAAA+CGG | - | tig0018036:9509-9528 | None:intergenic | 25.0% |
| ! | CATGCATGTAAAAAAAAAGA+AGG | - | tig0018036:9655-9674 | None:intergenic | 25.0% |
| ! | ATTTAAGCTCATGCATAAAA+TGG | + | tig0018036:9753-9772 | Msa1363220:intron | 25.0% |
| ! | TTTAAGCTCATGCATAAAAT+GGG | + | tig0018036:9754-9773 | Msa1363220:intron | 25.0% |
| ! | CAAAGTCATATAATATGACT+AGG | + | tig0018036:9788-9807 | Msa1363220:intron | 25.0% |
| ! | GAGAAAGAAAATACATGTAT+AGG | + | tig0018036:9824-9843 | Msa1363220:intron | 25.0% |
| !!! | GCTGTTTTTATTGTTGTATT+TGG | + | tig0018036:9900-9919 | Msa1363220:intron | 25.0% |
| !! | TTCTTCTACATAGTTTTTGT+TGG | + | tig0018036:10002-10021 | Msa1363220:intron | 25.0% |
| !! | TAAAAGTATAGATCAGATGA+GGG | - | tig0018036:10035-10054 | None:intergenic | 25.0% |
| !! | ATAAAAGTATAGATCAGATG+AGG | - | tig0018036:10036-10055 | None:intergenic | 25.0% |
| ! | GTGTGTACTATGTAATAAAA+CGG | - | tig0018036:10331-10350 | None:intergenic | 25.0% |
| ! | TATATATTGAAGAGAAAAGG+GGG | - | tig0018036:10828-10847 | None:intergenic | 25.0% |
| ! | AATTGTCAATATTCTGTGAT+TGG | + | tig0018036:10855-10874 | Msa1363220:intron | 25.0% |
| !!! | CATATAAACACTGATTTCAA+TGG | - | tig0018036:11097-11116 | None:intergenic | 25.0% |
| ! | CATTGAAATCAGTGTTTATA+TGG | + | tig0018036:11095-11114 | Msa1363220:intron | 25.0% |
| !! | TGTGTTTATATGGTAGATTT+TGG | + | tig0018036:11195-11214 | Msa1363220:intron | 25.0% |
| ! | ATTGCAATTTATCGTGAAAT+TGG | + | tig0018036:11241-11260 | Msa1363220:intron | 25.0% |
| !! | TTTTCACTTCTCTCTTAATT+CGG | - | tig0018036:11425-11444 | None:intergenic | 25.0% |
| ! | TAACATTGTTCACTACATAA+TGG | + | tig0018036:11618-11637 | Msa1363220:intron | 25.0% |
| ! | TGATTAACTAATTTCCTGTT+TGG | + | tig0018036:11652-11671 | Msa1363220:intron | 25.0% |
| ! | GATTAACTAATTTCCTGTTT+GGG | + | tig0018036:11653-11672 | Msa1363220:intron | 25.0% |
| ! | AATTTCAAAGGATATACTAC+AGG | - | tig0018036:11738-11757 | None:intergenic | 25.0% |
| ! | ATTGTTCCCTATAATTTCAA+AGG | - | tig0018036:11750-11769 | None:intergenic | 25.0% |
| !! | AAAAGAGGTACAATTAGAAA+TGG | - | tig0018036:11800-11819 | None:intergenic | 25.0% |
| !!! | TCTTGGTCAAGTTTTATATT+GGG | - | tig0018036:11921-11940 | None:intergenic | 25.0% |
| !!! | ATCTTGGTCAAGTTTTATAT+TGG | - | tig0018036:11922-11941 | None:intergenic | 25.0% |
| ! | AAATACTATAGTTGAACAAC+GGG | - | tig0018036:12219-12238 | None:intergenic | 25.0% |
| ! | TAAAAGAAAGTAGAAAAGTG+TGG | + | tig0018036:12471-12490 | Msa1363220:intron | 25.0% |
| !!! | TAATTATGCATTGTTGTTTC+AGG | + | tig0018036:12762-12781 | Msa1363220:intron | 25.0% |
| ! | GTATGAATGAAATAAAGAGA+TGG | - | tig0018036:12907-12926 | None:intergenic | 25.0% |
| ! | TTCTCAAATACTATCTTGTT+TGG | + | tig0018036:13210-13229 | Msa1363220:CDS | 25.0% |
| !!! | CTTATGTTTCTTTTGTTTGT+AGG | + | tig0018036:13320-13339 | Msa1363220:intron | 25.0% |
| !!! | GTAAGTATGTTACTTTTTAC+CGG | + | tig0018036:13361-13380 | Msa1363220:intron | 25.0% |
| ! | TACGAAATTGAAGAAAACAA+CGG | - | tig0018036:13796-13815 | None:intergenic | 25.0% |
| !! | TGAAGTCAAAAGTATAAGAA+TGG | - | tig0018036:13947-13966 | None:intergenic | 25.0% |
| ! | GGTGTTTATATAATCTTGTT+TGG | + | tig0018036:13978-13997 | Msa1363220:three_prime_UTR | 25.0% |
| ! | TAATATCACACATTAAATCG+CGG | - | tig0018036:14049-14068 | None:intergenic | 25.0% |
| AAGTGAAAAAGTCGAAAAAC+CGG | + | tig0018036:7652-7671 | Msa1363220:five_prime_UTR | 30.0% | |
| TGTTCTTTCAATCAATCCAA+AGG | - | tig0018036:7816-7835 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAAGAAA+TGG | + | tig0018036:7947-7966 | Msa1363220:exon | 30.0% | |
| TAAAAAGAGTGATGAAAGTG+TGG | - | tig0018036:8082-8101 | None:intergenic | 30.0% | |
| ! | TGCTGTTAAATTGTCGTTTA+TGG | + | tig0018036:8283-8302 | Msa1363220:intron | 30.0% |
| ! | CGTTTATGGATTTTAGATCT+TGG | + | tig0018036:8297-8316 | Msa1363220:intron | 30.0% |
| ATAATCACACATGTCAGTAT+TGG | - | tig0018036:8483-8502 | None:intergenic | 30.0% | |
| !! | CAATGACTGAATTACTTTTG+TGG | + | tig0018036:8721-8740 | Msa1363220:intron | 30.0% |
| AATTATTCAGCTTGATCAAC+TGG | - | tig0018036:8875-8894 | None:intergenic | 30.0% | |
| ! | TTTGTAAGAAAAGAGTGTAG+TGG | + | tig0018036:8901-8920 | Msa1363220:intron | 30.0% |
| ! | TTGTAAGAAAAGAGTGTAGT+GGG | + | tig0018036:8902-8921 | Msa1363220:intron | 30.0% |
| TGAATGAGCATCTAAATTCA+AGG | - | tig0018036:9057-9076 | None:intergenic | 30.0% | |
| TACAAAGAGATACTTGGAAA+TGG | - | tig0018036:9140-9159 | None:intergenic | 30.0% | |
| ACAAAGTACAAAGAGATACT+TGG | - | tig0018036:9146-9165 | None:intergenic | 30.0% | |
| AATGAATCATGAACTGACAA+GGG | - | tig0018036:9232-9251 | None:intergenic | 30.0% | |
| TAATGAATCATGAACTGACA+AGG | - | tig0018036:9233-9252 | None:intergenic | 30.0% | |
| TCAGTTCATGATTCATTACT+TGG | + | tig0018036:9235-9254 | Msa1363220:intron | 30.0% | |
| ! | CAGTTGATTGCAATTTTACT+TGG | + | tig0018036:9289-9308 | Msa1363220:intron | 30.0% |
| !!! | CAATTTTACTTGGCCTTAAT+AGG | + | tig0018036:9299-9318 | Msa1363220:intron | 30.0% |
| TACATTTATGCCTCCTATTA+AGG | - | tig0018036:9315-9334 | None:intergenic | 30.0% | |
| CCTTGACATATCATCATAAA+GGG | - | tig0018036:9448-9467 | None:intergenic | 30.0% | |
| ACCTTGACATATCATCATAA+AGG | - | tig0018036:9449-9468 | None:intergenic | 30.0% | |
| CTTAAATCATGCAATGTCTA+AGG | - | tig0018036:9740-9759 | None:intergenic | 30.0% | |
| TTAAGCTCATGCATAAAATG+GGG | + | tig0018036:9755-9774 | Msa1363220:intron | 30.0% | |
| !! | GTACAATATTAAGCTTGTTG+CGG | + | tig0018036:9878-9897 | Msa1363220:intron | 30.0% |
| CTATGTAGAAGAAACTATCA+AGG | - | tig0018036:9995-10014 | None:intergenic | 30.0% | |
| AAGTTGTATGAAATGTTGGA+TGG | - | tig0018036:10259-10278 | None:intergenic | 30.0% | |
| AACATTTCATACAACTTCAC+CGG | + | tig0018036:10262-10281 | Msa1363220:intron | 30.0% | |
| ! | ATGACATTTTCCTATTAGCT+AGG | + | tig0018036:10299-10318 | Msa1363220:intron | 30.0% |
| ! | TGACATTTTCCTATTAGCTA+GGG | + | tig0018036:10300-10319 | Msa1363220:intron | 30.0% |
| TATACTGAAGCAAATTATGC+AGG | - | tig0018036:10440-10459 | None:intergenic | 30.0% | |
| AGATCACTCTTATTCATAAG+AGG | - | tig0018036:10483-10502 | None:intergenic | 30.0% | |
| !! | ATTGAAAGTATTTGGCATTG+TGG | - | tig0018036:10577-10596 | None:intergenic | 30.0% |
| !! | GCAACACTGACTTATAAAAA+GGG | - | tig0018036:10781-10800 | None:intergenic | 30.0% |
| !!! | CATGTTCAGTTTTAGATACT+TGG | + | tig0018036:11039-11058 | Msa1363220:intron | 30.0% |
| !!! | AGTTTTAGATACTTGGACAA+TGG | + | tig0018036:11046-11065 | Msa1363220:intron | 30.0% |
| TCAATGGACATTTATGAGTA+TGG | - | tig0018036:11081-11100 | None:intergenic | 30.0% | |
| TTTCACTTCTCTCTTAATTC+GGG | - | tig0018036:11424-11443 | None:intergenic | 30.0% | |
| TTATAAAGAGGAAGTGAAGA+GGG | - | tig0018036:11546-11565 | None:intergenic | 30.0% | |
| CTTCCTCTTTATAACAGAAT+TGG | + | tig0018036:11552-11571 | Msa1363220:intron | 30.0% | |
| TGACCAATTCTGTTATAAAG+AGG | - | tig0018036:11558-11577 | None:intergenic | 30.0% | |
| TAGTGAACAATGTTATGAGA+AGG | - | tig0018036:11613-11632 | None:intergenic | 30.0% | |
| CAGTTAGAAACATAACTGTT+AGG | - | tig0018036:11699-11718 | None:intergenic | 30.0% | |
| ! | ACAGTTATGTTTCTAACTGT+AGG | + | tig0018036:11700-11719 | Msa1363220:intron | 30.0% |
| TCTAACTGTAGGATGATTAA+AGG | + | tig0018036:11711-11730 | Msa1363220:intron | 30.0% | |
| ! | TTAGAAATGGTGGAACTATA+AGG | - | tig0018036:11787-11806 | None:intergenic | 30.0% |
| !! | CTTGGTCAAGTTTTATATTG+GGG | - | tig0018036:11920-11939 | None:intergenic | 30.0% |
| AATATTTGAAAGGAAACCTG+TGG | + | tig0018036:11944-11963 | Msa1363220:intron | 30.0% | |
| ! | AAAATCCAGTTTAAAACCAC+AGG | - | tig0018036:11963-11982 | None:intergenic | 30.0% |
| ! | GAAATACAGTTTGTTCAAGA+TGG | + | tig0018036:12036-12055 | Msa1363220:intron | 30.0% |
| ATCAACAATGGCATAAAAAC+CGG | - | tig0018036:12097-12116 | None:intergenic | 30.0% | |
| AGGATTGAAAATACACTTTC+AGG | + | tig0018036:12157-12176 | Msa1363220:intron | 30.0% | |
| ATTGAAAATACACTTTCAGG+TGG | + | tig0018036:12160-12179 | Msa1363220:intron | 30.0% | |
| ! | TAGAAAAGTGTGGAGAAATT+TGG | + | tig0018036:12481-12500 | Msa1363220:intron | 30.0% |
| CATTAACTAAAGATCAGACA+GGG | + | tig0018036:12675-12694 | Msa1363220:intron | 30.0% | |
| !! | TGAAACAAACACTAGCTTTA+AGG | - | tig0018036:12704-12723 | None:intergenic | 30.0% |
| ! | TGTTTCACTTGAATTTTCTG+TGG | + | tig0018036:12717-12736 | Msa1363220:intron | 30.0% |
| ! | AAATTTAGAGCAGTTTGTGT+TGG | + | tig0018036:13742-13761 | Msa1363220:three_prime_UTR | 30.0% |
| TTGTTTGGTTATGTGCAATA+TGG | + | tig0018036:13993-14012 | Msa1363220:three_prime_UTR | 30.0% | |
| AATATCACACATTAAATCGC+GGG | - | tig0018036:14048-14067 | None:intergenic | 30.0% | |
| GCGATTTAATGTGTGATATT+AGG | + | tig0018036:14048-14067 | Msa1363220:three_prime_UTR | 30.0% | |
| TATGAACTATTGTAACTGCC+AGG | + | tig0018036:7624-7643 | Msa1363220:five_prime_UTR | 35.0% | |
| !!! | GGTTTTTCGACTTTTTCACT+TGG | - | tig0018036:7653-7672 | None:intergenic | 35.0% |
| CCAAAGGAATGAAGGAATTA+CGG | - | tig0018036:7800-7819 | None:intergenic | 35.0% | |
| CAATCAATCCAAAGGAATGA+AGG | - | tig0018036:7808-7827 | None:intergenic | 35.0% | |
| TTCTTCTTCTTCTTCTTTGC+CGG | - | tig0018036:7940-7959 | None:intergenic | 35.0% | |
| ATCTTGAGAAAATGCAACTC+CGG | + | tig0018036:7982-8001 | Msa1363220:CDS | 35.0% | |
| GAGATCTGAAAAGAGAGTTA+TGG | - | tig0018036:8206-8225 | None:intergenic | 35.0% | |
| !! | TGCATCGTTTTAAGTAGATG+AGG | + | tig0018036:8574-8593 | Msa1363220:intron | 35.0% |
| CCTAAATGATAGATCACAAG+CGG | - | tig0018036:9209-9228 | None:intergenic | 35.0% | |
| !!! | TTTTACTTGGCCTTAATAGG+AGG | + | tig0018036:9302-9321 | Msa1363220:intron | 35.0% |
| CCCTTTATGATGATATGTCA+AGG | + | tig0018036:9445-9464 | Msa1363220:CDS | 35.0% | |
| ! | ACAAACGGTGCAATTCATTT+TGG | - | tig0018036:9494-9513 | None:intergenic | 35.0% |
| GTTTATATACCTCAGTACAG+AGG | - | tig0018036:9619-9638 | None:intergenic | 35.0% | |
| ! | GTTTTCTTCAAGAGTAGGTT+GGG | + | tig0018036:9697-9716 | Msa1363220:intron | 35.0% |
| ! | TTTTCTTCAAGAGTAGGTTG+GGG | + | tig0018036:9698-9717 | Msa1363220:intron | 35.0% |
| TATAATATGACTAGGGCAAG+AGG | + | tig0018036:9796-9815 | Msa1363220:intron | 35.0% | |
| AAGAAACTATCAAGGCTTAG+AGG | - | tig0018036:9987-10006 | None:intergenic | 35.0% | |
| ! | TCAATCATCTTTTCTACCGT+AGG | + | tig0018036:10111-10130 | Msa1363220:intron | 35.0% |
| ! | CAATCATCTTTTCTACCGTA+GGG | + | tig0018036:10112-10131 | Msa1363220:intron | 35.0% |
| ! | AATCATCTTTTCTACCGTAG+GGG | + | tig0018036:10113-10132 | Msa1363220:intron | 35.0% |
| !! | TAGAATTTTGATAGCCCCTA+CGG | - | tig0018036:10130-10149 | None:intergenic | 35.0% |
| GTACTAGATGAGTTAGACTT+GGG | - | tig0018036:10170-10189 | None:intergenic | 35.0% | |
| AGAATGTTGCTCTTGATGTA+TGG | - | tig0018036:10195-10214 | None:intergenic | 35.0% | |
| GGTGAAGTTGTATGAAATGT+TGG | - | tig0018036:10263-10282 | None:intergenic | 35.0% | |
| CTTCAGTATAAACCTCTAGT+CGG | + | tig0018036:10450-10469 | Msa1363220:intron | 35.0% | |
| TTGTGGCAAAGATTAACACT+GGG | - | tig0018036:10560-10579 | None:intergenic | 35.0% | |
| ATTGTGGCAAAGATTAACAC+TGG | - | tig0018036:10561-10580 | None:intergenic | 35.0% | |
| TGCCATATGATTGAGTGTAT+CGG | + | tig0018036:10606-10625 | Msa1363220:intron | 35.0% | |
| AGTAAATAAACGCCCTTGAA+AGG | - | tig0018036:10700-10719 | None:intergenic | 35.0% | |
| !!! | TCAGACAGTTGAAGGTTTTT+TGG | + | tig0018036:10742-10761 | Msa1363220:intron | 35.0% |
| !!! | CAGACAGTTGAAGGTTTTTT+GGG | + | tig0018036:10743-10762 | Msa1363220:intron | 35.0% |
| !!! | AGACAGTTGAAGGTTTTTTG+GGG | + | tig0018036:10744-10763 | Msa1363220:intron | 35.0% |
| !! | GGCAACACTGACTTATAAAA+AGG | - | tig0018036:10782-10801 | None:intergenic | 35.0% |
| AACAACAGAGACTCAAATTG+CGG | - | tig0018036:10957-10976 | None:intergenic | 35.0% | |
| ACCATATAAACACACCATTG+CGG | - | tig0018036:11189-11208 | None:intergenic | 35.0% | |
| TCAGATAGAACCTTAGAGAT+GGG | - | tig0018036:11500-11519 | None:intergenic | 35.0% | |
| TTCAGATAGAACCTTAGAGA+TGG | - | tig0018036:11501-11520 | None:intergenic | 35.0% | |
| GTTATAAAGAGGAAGTGAAG+AGG | - | tig0018036:11547-11566 | None:intergenic | 35.0% | |
| TGTTCACTACATAATGGTCT+TGG | + | tig0018036:11624-11643 | Msa1363220:intron | 35.0% | |
| GTTCACTACATAATGGTCTT+GGG | + | tig0018036:11625-11644 | Msa1363220:intron | 35.0% | |
| AAACATAACTGTTAGGTGAC+TGG | - | tig0018036:11692-11711 | None:intergenic | 35.0% | |
| ! | AGAGGTACAATTAGAAATGG+TGG | - | tig0018036:11797-11816 | None:intergenic | 35.0% |
| ! | CCTCTTTTATAGTGCTCTAA+CGG | + | tig0018036:11812-11831 | Msa1363220:intron | 35.0% |
| CGTTCCAAACATTCCTAATT+AGG | - | tig0018036:11845-11864 | None:intergenic | 35.0% | |
| !! | AAACTGGATTTTGAGAAAGC+TGG | + | tig0018036:11971-11990 | Msa1363220:intron | 35.0% |
| ! | GCAATTGGTAAACAAGGTTT+TGG | + | tig0018036:12010-12029 | Msa1363220:intron | 35.0% |
| ! | AGTTTGTTCAAGATGGAGAA+TGG | + | tig0018036:12043-12062 | Msa1363220:intron | 35.0% |
| TCATGATCAAATGAGGACAT+AGG | + | tig0018036:12137-12156 | Msa1363220:intron | 35.0% | |
| ! | TTGTTTCACTTATAGCTCTG+AGG | - | tig0018036:12361-12380 | None:intergenic | 35.0% |
| !!! | ACAATTTTTTGGACCTCGTT+TGG | + | tig0018036:12377-12396 | Msa1363220:intron | 35.0% |
| !!! | CAATTTTTTGGACCTCGTTT+GGG | + | tig0018036:12378-12397 | Msa1363220:intron | 35.0% |
| !!! | AATTTTTTGGACCTCGTTTG+GGG | + | tig0018036:12379-12398 | Msa1363220:intron | 35.0% |
| ! | AAAAGTGTGGAGAAATTTGG+AGG | + | tig0018036:12484-12503 | Msa1363220:intron | 35.0% |
| AAAGTGTGGAGAAATTTGGA+GGG | + | tig0018036:12485-12504 | Msa1363220:intron | 35.0% | |
| AATTTGGAGGGAATGATGAA+AGG | + | tig0018036:12497-12516 | Msa1363220:intron | 35.0% | |
| ATTTGGAGGGAATGATGAAA+GGG | + | tig0018036:12498-12517 | Msa1363220:intron | 35.0% | |
| GATGAAAGAGATAGAGAGAA+AGG | + | tig0018036:12528-12547 | Msa1363220:intron | 35.0% | |
| AAAGAGATAGAGAGAAAGGT+AGG | + | tig0018036:12532-12551 | Msa1363220:intron | 35.0% | |
| ! | GATTCACTATCCTTTAAGGA+GGG | - | tig0018036:12565-12584 | None:intergenic | 35.0% |
| TGCAGAAAATCTACAAACAG+GGG | - | tig0018036:12592-12611 | None:intergenic | 35.0% | |
| GTGCAGAAAATCTACAAACA+GGG | - | tig0018036:12593-12612 | None:intergenic | 35.0% | |
| AGTGCAGAAAATCTACAAAC+AGG | - | tig0018036:12594-12613 | None:intergenic | 35.0% | |
| CCTGTCTGATCTTTAGTTAA+TGG | - | tig0018036:12677-12696 | None:intergenic | 35.0% | |
| CCATTAACTAAAGATCAGAC+AGG | + | tig0018036:12674-12693 | Msa1363220:intron | 35.0% | |
| !!! | TTTCAGGTTTTTCTCTGCTT+TGG | + | tig0018036:12778-12797 | Msa1363220:intron | 35.0% |
| TGAAATAAAGAGATGGGAGT+GGG | - | tig0018036:12900-12919 | None:intergenic | 35.0% | |
| ATGAAATAAAGAGATGGGAG+TGG | - | tig0018036:12901-12920 | None:intergenic | 35.0% | |
| ATATGCATGCAACTTGGTTA+AGG | - | tig0018036:13022-13041 | None:intergenic | 35.0% | |
| GTATGAATATGCATGCAACT+TGG | - | tig0018036:13028-13047 | None:intergenic | 35.0% | |
| ATATGCATGCAACTTGGTTA+AGG | - | tig0018036:13022-13041 | None:intergenic | 35.0% | |
| TAGAGAATATGCATGCAACT+TGG | - | tig0018036:13150-13169 | None:intergenic | 35.0% | |
| TCTATTGTTGCCATGATTGT+GGG | + | tig0018036:13166-13185 | Msa1363220:CDS | 35.0% | |
| ATTGTGCACGTTATAGTGAA+CGG | + | tig0018036:13285-13304 | Msa1363220:intron | 35.0% | |
| !!! | TGTTACTTTTTACCGGCAAT+TGG | + | tig0018036:13368-13387 | Msa1363220:intron | 35.0% |
| CATATTGATGAACCAATTGC+CGG | - | tig0018036:13383-13402 | None:intergenic | 35.0% | |
| ATCACCTAGAATAACCAGAA+GGG | - | tig0018036:13718-13737 | None:intergenic | 35.0% | |
| TATCACCTAGAATAACCAGA+AGG | - | tig0018036:13719-13738 | None:intergenic | 35.0% | |
| ! | AGACACCTATTGATTGTTTC+AGG | + | tig0018036:13768-13787 | Msa1363220:three_prime_UTR | 35.0% |
| AGTCAGAAATCCAAACTTAG+GGG | - | tig0018036:13899-13918 | None:intergenic | 35.0% | |
| CAGTCAGAAATCCAAACTTA+GGG | - | tig0018036:13900-13919 | None:intergenic | 35.0% | |
| TCAGTCAGAAATCCAAACTT+AGG | - | tig0018036:13901-13920 | None:intergenic | 35.0% | |
| ACATATTTCTTGGCCAAACT+TGG | - | tig0018036:14084-14103 | None:intergenic | 35.0% | |
| TAATCCCAACGTTTACCAAG+TGG | - | tig0018036:7532-7551 | None:intergenic | 40.0% | |
| CCGTAATTCCTTCATTCCTT+TGG | + | tig0018036:7797-7816 | Msa1363220:intron | 40.0% | |
| TCTCTCAGATCTATCCATCT+AGG | + | tig0018036:7899-7918 | Msa1363220:intron | 40.0% | |
| CTCTCAGATCTATCCATCTA+GGG | + | tig0018036:7900-7919 | Msa1363220:intron | 40.0% | |
| ATAGATTCCGGTAATTCTGC+CGG | - | tig0018036:8004-8023 | None:intergenic | 40.0% | |
| TGATCTCATGAGAACTATCC+AGG | + | tig0018036:8031-8050 | Msa1363220:CDS | 40.0% | |
| ! | AAGAGTGATGAAAGTGTGGT+TGG | - | tig0018036:8078-8097 | None:intergenic | 40.0% |
| CATCTAAAGATTGCTCGATG+TGG | - | tig0018036:8775-8794 | None:intergenic | 40.0% | |
| CACATCGAGCAATCTTTAGA+TGG | + | tig0018036:8773-8792 | Msa1363220:intron | 40.0% | |
| !! | GCGTCTGTTTGGTGTATATT+TGG | + | tig0018036:9098-9117 | Msa1363220:intron | 40.0% |
| CCGCTTGTGATCTATCATTT+AGG | + | tig0018036:9206-9225 | Msa1363220:intron | 40.0% | |
| ! | GCAATCAACTGAAAGTGCAT+TGG | - | tig0018036:9280-9299 | None:intergenic | 40.0% |
| CGAAGCAAGTATGATACACA+TGG | - | tig0018036:9417-9436 | None:intergenic | 40.0% | |
| TCAGTACAGAGGCAAAATTC+AGG | - | tig0018036:9608-9627 | None:intergenic | 40.0% | |
| ! | TGAATTTTGCCTCTGTACTG+AGG | + | tig0018036:9607-9626 | Msa1363220:CDS | 40.0% |
| ATATCTGCAAATGCTGCCAT+GGG | + | tig0018036:9675-9694 | Msa1363220:intron | 40.0% | |
| CTACTCTTGAAGAAAACCCA+TGG | - | tig0018036:9694-9713 | None:intergenic | 40.0% | |
| ! | CATGGGTTTTCTTCAAGAGT+AGG | + | tig0018036:9692-9711 | Msa1363220:intron | 40.0% |
| ! | GGTTTTCTTCAAGAGTAGGT+TGG | + | tig0018036:9696-9715 | Msa1363220:intron | 40.0% |
| AGTATAGATCAGATGAGGGT+AGG | - | tig0018036:10031-10050 | None:intergenic | 40.0% | |
| !! | GACGTTTTGAGCATGTATTG+AGG | - | tig0018036:10080-10099 | None:intergenic | 40.0% |
| CGTACTAGATGAGTTAGACT+TGG | - | tig0018036:10171-10190 | None:intergenic | 40.0% | |
| TGGATGGCAAAATGTCAACA+CGG | - | tig0018036:10243-10262 | None:intergenic | 40.0% | |
| ! | CATTTTCCTATTAGCTAGGG+TGG | + | tig0018036:10303-10322 | Msa1363220:intron | 40.0% |
| TGTACACCATAGGATTCAAG+CGG | - | tig0018036:10395-10414 | None:intergenic | 40.0% | |
| ! | CAGGTATTGTGAGTGATAGA+GGG | - | tig0018036:10421-10440 | None:intergenic | 40.0% |
| TAAGAGTGATCTTCATGTCG+TGG | + | tig0018036:10491-10510 | Msa1363220:intron | 40.0% | |
| GACCGATACACTCAATCATA+TGG | - | tig0018036:10611-10630 | None:intergenic | 40.0% | |
| ! | AGATGAGAGGTGGATTTGTA+CGG | - | tig0018036:10660-10679 | None:intergenic | 40.0% |
| CTTTCCTCGTTTCCTTTCAA+GGG | + | tig0018036:10685-10704 | Msa1363220:intron | 40.0% | |
| ! | CTCATTTATAGCCTTACCTC+TGG | + | tig0018036:10718-10737 | Msa1363220:intron | 40.0% |
| ATAAGTCAGTGTTGCCTAAC+TGG | + | tig0018036:10786-10805 | Msa1363220:intron | 40.0% | |
| GGTGAAAAATAAGGCCAGTT+AGG | - | tig0018036:10803-10822 | None:intergenic | 40.0% | |
| TATTGAAGAGAAAAGGGGGA+GGG | - | tig0018036:10824-10843 | None:intergenic | 40.0% | |
| ATATTGAAGAGAAAAGGGGG+AGG | - | tig0018036:10825-10844 | None:intergenic | 40.0% | |
| ACAACAGAGACTCAAATTGC+GGG | - | tig0018036:10956-10975 | None:intergenic | 40.0% | |
| ACAATGTTGTGGAGACAAAG+CGG | - | tig0018036:10994-11013 | None:intergenic | 40.0% | |
| CATACACTGGTACAATGTTG+TGG | - | tig0018036:11005-11024 | None:intergenic | 40.0% | |
| CACAACATTGTACCAGTGTA+TGG | + | tig0018036:11003-11022 | Msa1363220:intron | 40.0% | |
| CATCAACAAGAACCATACAC+TGG | - | tig0018036:11018-11037 | None:intergenic | 40.0% | |
| !!! | AGATTTTTAGCAACCGCCAT+AGG | + | tig0018036:11119-11138 | Msa1363220:intron | 40.0% |
| ATCCCTTTGCAAATAGCCTA+TGG | - | tig0018036:11138-11157 | None:intergenic | 40.0% | |
| ! | CTGCAAAGAACTTTTGCCTT+TGG | + | tig0018036:11275-11294 | Msa1363220:intron | 40.0% |
| GAGAGTAATACCAGAGATAG+AGG | - | tig0018036:11364-11383 | None:intergenic | 40.0% | |
| TTACTCTCTCCCTTCAAAAC+CGG | + | tig0018036:11376-11395 | Msa1363220:intron | 40.0% | |
| ! | CCGTTAGAGCACTATAAAAG+AGG | - | tig0018036:11815-11834 | None:intergenic | 40.0% |
| TATAGTGCTCTAACGGTAAG+TGG | + | tig0018036:11819-11838 | Msa1363220:intron | 40.0% | |
| TAACGGTAAGTGGCCTAATT+AGG | + | tig0018036:11829-11848 | Msa1363220:intron | 40.0% | |
| GTGGCCTAATTAGGAATGTT+TGG | + | tig0018036:11838-11857 | Msa1363220:intron | 40.0% | |
| ! | TTAGGAATGTTTGGAACGCT+AGG | + | tig0018036:11847-11866 | Msa1363220:intron | 40.0% |
| ! | TAGGAATGTTTGGAACGCTA+GGG | + | tig0018036:11848-11867 | Msa1363220:intron | 40.0% |
| !!! | GGAAACCTGTGGTTTTAAAC+TGG | + | tig0018036:11955-11974 | Msa1363220:intron | 40.0% |
| GGATCATTTCTGTTGGCAAT+TGG | + | tig0018036:11995-12014 | Msa1363220:intron | 40.0% | |
| CTGTTGGCAATTGGTAAACA+AGG | + | tig0018036:12004-12023 | Msa1363220:intron | 40.0% | |
| ! | ACCATGGAGTTTCTTTTCAC+CGG | + | tig0018036:12075-12094 | Msa1363220:intron | 40.0% |
| ! | GAAAATACACTTTCAGGTGG+TGG | + | tig0018036:12163-12182 | Msa1363220:intron | 40.0% |
| ! | TCGTTTGGGGTTTGTTTGTA+GGG | + | tig0018036:12392-12411 | Msa1363220:intron | 40.0% |
| GATTAGGATTCCCTAACTGT+GGG | + | tig0018036:12414-12433 | Msa1363220:intron | 40.0% | |
| ! | ACTATCCTTTAAGGAGGGAA+TGG | - | tig0018036:12560-12579 | None:intergenic | 40.0% |
| ! | GGATTCACTATCCTTTAAGG+AGG | - | tig0018036:12566-12585 | None:intergenic | 40.0% |
| CTGGGATTCACTATCCTTTA+AGG | - | tig0018036:12569-12588 | None:intergenic | 40.0% | |
| AAAATCTACAAACAGGGGCT+GGG | - | tig0018036:12587-12606 | None:intergenic | 40.0% | |
| !! | TCTCTGCTTTGGAAATTCAG+TGG | + | tig0018036:12789-12808 | Msa1363220:CDS | 40.0% |
| CTCTATTGTTGCCATGATTG+TGG | + | tig0018036:13165-13184 | Msa1363220:CDS | 40.0% | |
| TGTGGGAAGTGAGGAAATTT+CGG | + | tig0018036:13183-13202 | Msa1363220:CDS | 40.0% | |
| AGTCTTACGAGCAGTAAACA+AGG | - | tig0018036:13240-13259 | None:intergenic | 40.0% | |
| TTATTTGCAGACTCAGCACA+AGG | + | tig0018036:13436-13455 | Msa1363220:intron | 40.0% | |
| TCACCTAGAATAACCAGAAG+GGG | - | tig0018036:13717-13736 | None:intergenic | 40.0% | |
| CGGTTCCTGAAACAATCAAT+AGG | - | tig0018036:13776-13795 | None:intergenic | 40.0% | |
| ATCAAGCAGTCATATGTGTG+TGG | + | tig0018036:13829-13848 | Msa1363220:three_prime_UTR | 40.0% | |
| ! | TGCATTTTTCCCCCTAAGTT+TGG | + | tig0018036:13886-13905 | Msa1363220:three_prime_UTR | 40.0% |
| GTCAGAAATCCAAACTTAGG+GGG | - | tig0018036:13898-13917 | None:intergenic | 40.0% | |
| ! | GGGTTTTGCAATACTTGGAA+CGG | - | tig0018036:14028-14047 | None:intergenic | 40.0% |
| TATTTCTTGGCCAAACTTGG+CGG | - | tig0018036:14081-14100 | None:intergenic | 40.0% | |
| CTTACAAACGACGCATCGTA+GGG | - | tig0018036:7583-7602 | None:intergenic | 45.0% | |
| TCTTACAAACGACGCATCGT+AGG | - | tig0018036:7584-7603 | None:intergenic | 45.0% | |
| GTCGTTTGTAAGAGTGAGTC+AGG | + | tig0018036:7591-7610 | Msa1363220:five_prime_UTR | 45.0% | |
| !!! | GACTTTTTCACTTGGCTTCC+TGG | - | tig0018036:7645-7664 | None:intergenic | 45.0% |
| GGAGAAGTAGTAACCCTAGA+TGG | - | tig0018036:7916-7935 | None:intergenic | 45.0% | |
| TAGGGTTACTACTTCTCCTC+CGG | + | tig0018036:7918-7937 | Msa1363220:five_prime_UTR | 45.0% | |
| TTCTTCTTCTTCTTTGCCGG+AGG | - | tig0018036:7937-7956 | None:intergenic | 45.0% | |
| GGCAGAATTACCGGAATCTA+TGG | + | tig0018036:8003-8022 | Msa1363220:CDS | 45.0% | |
| GATCAGTGTGCCATAGATTC+CGG | - | tig0018036:8016-8035 | None:intergenic | 45.0% | |
| !! | GTGTGGTTGGTTTGCTTACA+TGG | - | tig0018036:8065-8084 | None:intergenic | 45.0% |
| ! | CAGATTGCTGCTTATCCTTG+TGG | + | tig0018036:8169-8188 | Msa1363220:intron | 45.0% |
| ! | ATTGCTGCTTATCCTTGTGG+TGG | + | tig0018036:8172-8191 | Msa1363220:CDS | 45.0% |
| ATGGATGACATACCACCACA+AGG | - | tig0018036:8187-8206 | None:intergenic | 45.0% | |
| ACACCTTTGATCAGAGGAGT+TGG | - | tig0018036:8442-8461 | None:intergenic | 45.0% | |
| ! | ACTCCTCTGATCAAAGGTGT+CGG | + | tig0018036:8442-8461 | Msa1363220:intron | 45.0% |
| TGAGAAGGCTGATAAGCTCA+AGG | - | tig0018036:8998-9017 | None:intergenic | 45.0% | |
| TGACTAACGCATGACTGAGA+AGG | - | tig0018036:9013-9032 | None:intergenic | 45.0% | |
| TTCTCAGTCATGCGTTAGTC+AGG | + | tig0018036:9012-9031 | Msa1363220:intron | 45.0% | |
| TCTCAGTCATGCGTTAGTCA+GGG | + | tig0018036:9013-9032 | Msa1363220:intron | 45.0% | |
| GATAGTACACTGCGTCTGTT+TGG | + | tig0018036:9087-9106 | Msa1363220:intron | 45.0% | |
| CGGAGACAGGTTATACAAGT+TGG | - | tig0018036:9189-9208 | None:intergenic | 45.0% | |
| GATATCTGCAAATGCTGCCA+TGG | + | tig0018036:9674-9693 | Msa1363220:intron | 45.0% | |
| AAGGCTTAGAGGTCAGTGTT+TGG | - | tig0018036:9976-9995 | None:intergenic | 45.0% | |
| GGATGGCAAAATGTCAACAC+GGG | - | tig0018036:10242-10261 | None:intergenic | 45.0% | |
| GTCATCGTAGACTGTAAGAC+CGG | - | tig0018036:10284-10303 | None:intergenic | 45.0% | |
| TACACCATAGGATTCAAGCG+GGG | - | tig0018036:10393-10412 | None:intergenic | 45.0% | |
| GTACACCATAGGATTCAAGC+GGG | - | tig0018036:10394-10413 | None:intergenic | 45.0% | |
| TAGAGGGAGATGTACACCAT+AGG | - | tig0018036:10405-10424 | None:intergenic | 45.0% | |
| ! | GCAGGTATTGTGAGTGATAG+AGG | - | tig0018036:10422-10441 | None:intergenic | 45.0% |
| ! | ATCTTCATGTCGTGGCTTTG+AGG | + | tig0018036:10499-10518 | Msa1363220:intron | 45.0% |
| TTAACACTGGGAGTTCACGA+GGG | - | tig0018036:10548-10567 | None:intergenic | 45.0% | |
| ATTAACACTGGGAGTTCACG+AGG | - | tig0018036:10549-10568 | None:intergenic | 45.0% | |
| GAAAGGAGATAGATGAGAGG+TGG | - | tig0018036:10670-10689 | None:intergenic | 45.0% | |
| GAGGAAAGGAGATAGATGAG+AGG | - | tig0018036:10673-10692 | None:intergenic | 45.0% | |
| CCTTGAAAGGAAACGAGGAA+AGG | - | tig0018036:10687-10706 | None:intergenic | 45.0% | |
| CCTTTCCTCGTTTCCTTTCA+AGG | + | tig0018036:10684-10703 | Msa1363220:intron | 45.0% | |
| AACTGTCTGAACCAGAGGTA+AGG | - | tig0018036:10732-10751 | None:intergenic | 45.0% | |
| AAGGGGGAGGGTGAAAAATA+AGG | - | tig0018036:10812-10831 | None:intergenic | 45.0% | |
| ! | TTCTGTGATTGGTGACCCAA+TGG | + | tig0018036:10866-10885 | Msa1363220:intron | 45.0% |
| ! | TCTGTGATTGGTGACCCAAT+GGG | + | tig0018036:10867-10886 | Msa1363220:intron | 45.0% |
| GACCAATTGCTAGTCCCATT+GGG | - | tig0018036:10884-10903 | None:intergenic | 45.0% | |
| AGACCAATTGCTAGTCCCAT+TGG | - | tig0018036:10885-10904 | None:intergenic | 45.0% | |
| ! | ACTAGCAATTGGTCTGTTCC+TGG | + | tig0018036:10890-10909 | Msa1363220:intron | 45.0% |
| CACCAGCATCAGAATGTGAT+GGG | + | tig0018036:10915-10934 | Msa1363220:intron | 45.0% | |
| ATCCCATCACATTCTGATGC+TGG | - | tig0018036:10920-10939 | None:intergenic | 45.0% | |
| ! | ATCAGAATGTGATGGGATCG+CGG | + | tig0018036:10922-10941 | Msa1363220:intron | 45.0% |
| TGTGGAGACAAAGCGGAAAT+TGG | - | tig0018036:10987-11006 | None:intergenic | 45.0% | |
| CCTTTGCAAATAGCCTATGG+CGG | - | tig0018036:11135-11154 | None:intergenic | 45.0% | |
| CGCCATAGGCTATTTGCAAA+GGG | + | tig0018036:11133-11152 | Msa1363220:intron | 45.0% | |
| ATGGTACCACAACTCAATGG+CGG | - | tig0018036:11163-11182 | None:intergenic | 45.0% | |
| CCTATGGTACCACAACTCAA+TGG | - | tig0018036:11166-11185 | None:intergenic | 45.0% | |
| ! | CCATTGAGTTGTGGTACCAT+AGG | + | tig0018036:11163-11182 | Msa1363220:intron | 45.0% |
| GCCGCAATGGTGTGTTTATA+TGG | + | tig0018036:11185-11204 | Msa1363220:intron | 45.0% | |
| ACCAGAGATAGAGGACATGT+GGG | - | tig0018036:11355-11374 | None:intergenic | 45.0% | |
| TACCAGAGATAGAGGACATG+TGG | - | tig0018036:11356-11375 | None:intergenic | 45.0% | |
| TGTCAATTCATCCAACCAGC+CGG | - | tig0018036:11398-11417 | None:intergenic | 45.0% | |
| GATAGAACCTTAGAGATGGG+AGG | - | tig0018036:11497-11516 | None:intergenic | 45.0% | |
| AAAGAGGAAGTGAAGAGGGA+GGG | - | tig0018036:11542-11561 | None:intergenic | 45.0% | |
| TAAAGAGGAAGTGAAGAGGG+AGG | - | tig0018036:11543-11562 | None:intergenic | 45.0% | |
| TGAGAAGGTGACATAGCAGA+GGG | - | tig0018036:11598-11617 | None:intergenic | 45.0% | |
| ATGAGAAGGTGACATAGCAG+AGG | - | tig0018036:11599-11618 | None:intergenic | 45.0% | |
| AGGTGACTGGATGAGAATGT+GGG | - | tig0018036:11679-11698 | None:intergenic | 45.0% | |
| TAGGTGACTGGATGAGAATG+TGG | - | tig0018036:11680-11699 | None:intergenic | 45.0% | |
| !! | CTGGATTTTGAGAAAGCTGG+AGG | + | tig0018036:11974-11993 | Msa1363220:intron | 45.0% |
| AGCTGGAGGATCATTTCTGT+TGG | + | tig0018036:11988-12007 | Msa1363220:intron | 45.0% | |
| AGAATGGAGAATCTGCACCA+TGG | + | tig0018036:12059-12078 | Msa1363220:intron | 45.0% | |
| ACCGGTGAAAAGAAACTCCA+TGG | - | tig0018036:12079-12098 | None:intergenic | 45.0% | |
| CTACAAACAAACCCCAAACG+AGG | - | tig0018036:12393-12412 | None:intergenic | 45.0% | |
| ! | CTCGTTTGGGGTTTGTTTGT+AGG | + | tig0018036:12391-12410 | Msa1363220:intron | 45.0% |
| ! | GGGGTTTGTTTGTAGGGATT+AGG | + | tig0018036:12398-12417 | Msa1363220:intron | 45.0% |
| GGATTAGGATTCCCTAACTG+TGG | + | tig0018036:12413-12432 | Msa1363220:intron | 45.0% | |
| AACGTAGAGACCCACAGTTA+GGG | - | tig0018036:12427-12446 | None:intergenic | 45.0% | |
| AAACGTAGAGACCCACAGTT+AGG | - | tig0018036:12428-12447 | None:intergenic | 45.0% | |
| TAACTGTGGGTCTCTACGTT+TGG | + | tig0018036:12427-12446 | Msa1363220:intron | 45.0% | |
| AACTGTGGGTCTCTACGTTT+GGG | + | tig0018036:12428-12447 | Msa1363220:intron | 45.0% | |
| ! | TCTACGTTTGGGGTGACTTT+AGG | + | tig0018036:12439-12458 | Msa1363220:intron | 45.0% |
| AGGTACCATTCCCTCCTTAA+AGG | + | tig0018036:12552-12571 | Msa1363220:intron | 45.0% | |
| GAAAATCTACAAACAGGGGC+TGG | - | tig0018036:12588-12607 | None:intergenic | 45.0% | |
| TTGCAACAGAAAGCGAGTTG+AGG | - | tig0018036:12815-12834 | None:intergenic | 45.0% | |
| TAAAGAGATGGGAGTGGGAA+GGG | - | tig0018036:12895-12914 | None:intergenic | 45.0% | |
| ATAAAGAGATGGGAGTGGGA+AGG | - | tig0018036:12896-12915 | None:intergenic | 45.0% | |
| TTCCTCACTTCCCACAATCA+TGG | - | tig0018036:13179-13198 | None:intergenic | 45.0% | |
| GACTCAGCACAAGGTTGAAA+TGG | + | tig0018036:13445-13464 | Msa1363220:intron | 45.0% | |
| GTTGAAATGGACAAGCGTGA+CGG | + | tig0018036:13458-13477 | Msa1363220:CDS | 45.0% | |
| TTGAAATGGACAAGCGTGAC+GGG | + | tig0018036:13459-13478 | Msa1363220:CDS | 45.0% | |
| AGGAACTGGTTGATCAATGC+GGG | - | tig0018036:13534-13553 | None:intergenic | 45.0% | |
| GAGGAACTGGTTGATCAATG+CGG | - | tig0018036:13535-13554 | None:intergenic | 45.0% | |
| AACCAGTTCCTCCTTCTGTT+GGG | + | tig0018036:13543-13562 | Msa1363220:CDS | 45.0% | |
| TATGCACCACAACCAGCATA+TGG | + | tig0018036:13566-13585 | Msa1363220:CDS | 45.0% | |
| ATGCACCACAACCAGCATAT+GGG | + | tig0018036:13567-13586 | Msa1363220:CDS | 45.0% | |
| CCATAATTCTGCCCATATGC+TGG | - | tig0018036:13581-13600 | None:intergenic | 45.0% | |
| CCAGCATATGGGCAGAATTA+TGG | + | tig0018036:13578-13597 | Msa1363220:CDS | 45.0% | |
| ! | ATCCCCCTTCTGGTTATTCT+AGG | + | tig0018036:13711-13730 | Msa1363220:CDS | 45.0% |
| CACCTAGAATAACCAGAAGG+GGG | - | tig0018036:13716-13735 | None:intergenic | 45.0% | |
| ! | ATCGCGGGTTTTGCAATACT+TGG | - | tig0018036:14033-14052 | None:intergenic | 45.0% |
| AGAGTGAGTCAGGTCAGCTA+TGG | + | tig0018036:7601-7620 | Msa1363220:five_prime_UTR | 50.0% | |
| ! | GAAAGAGAGAGAAAGCGCGT+GGG | - | tig0018036:7755-7774 | None:intergenic | 50.0% |
| ! | AGAAAGAGAGAGAAAGCGCG+TGG | - | tig0018036:7756-7775 | None:intergenic | 50.0% |
| ! | CGGTGTTGAGTAGAAGACAC+TGG | - | tig0018036:7780-7799 | None:intergenic | 50.0% |
| TGCAACTCCGGCAGAATTAC+CGG | + | tig0018036:7994-8013 | Msa1363220:CDS | 50.0% | |
| !! | GCTTACATGGAGTATCGACC+TGG | - | tig0018036:8052-8071 | None:intergenic | 50.0% |
| GCACCAACTCCTCTGATCAA+AGG | + | tig0018036:8436-8455 | Msa1363220:intron | 50.0% | |
| ACACCGACACCTTTGATCAG+AGG | - | tig0018036:8448-8467 | None:intergenic | 50.0% | |
| TGATCGTAATGTGCTTCCCG+TGG | + | tig0018036:8970-8989 | Msa1363220:intron | 50.0% | |
| ! | TGATAAGCTCAAGGTGCCAC+GGG | - | tig0018036:8989-9008 | None:intergenic | 50.0% |
| ! | CTGATAAGCTCAAGGTGCCA+CGG | - | tig0018036:8990-9009 | None:intergenic | 50.0% |
| GATAGATCACAAGCGGAGAC+AGG | - | tig0018036:9202-9221 | None:intergenic | 50.0% | |
| TCCAGATACACATGCTGTGC+TGG | + | tig0018036:9542-9561 | Msa1363220:intron | 50.0% | |
| ACCAGCACAGCATGTGTATC+TGG | - | tig0018036:9546-9565 | None:intergenic | 50.0% | |
| ACGGTACCACCCTAGCTAAT+AGG | - | tig0018036:10312-10331 | None:intergenic | 50.0% | |
| AAGCGGGGTGGATGATATTG+AGG | - | tig0018036:10378-10397 | None:intergenic | 50.0% | |
| AGAGGTGAAAGTCCGACTAG+AGG | - | tig0018036:10465-10484 | None:intergenic | 50.0% | |
| AACGCCCTTGAAAGGAAACG+AGG | - | tig0018036:10692-10711 | None:intergenic | 50.0% | |
| CCTTCAACTGTCTGAACCAG+AGG | - | tig0018036:10737-10756 | None:intergenic | 50.0% | |
| ! | CCTCTGGTTCAGACAGTTGA+AGG | + | tig0018036:10734-10753 | Msa1363220:intron | 50.0% |
| ! | GACCCAATGGGACTAGCAAT+TGG | + | tig0018036:10879-10898 | Msa1363220:intron | 50.0% |
| GCACCAGCATCAGAATGTGA+TGG | + | tig0018036:10914-10933 | Msa1363220:intron | 50.0% | |
| CCGCCATAGGCTATTTGCAA+AGG | + | tig0018036:11132-11151 | Msa1363220:intron | 50.0% | |
| AAACACACCATTGCGGCCTA+TGG | - | tig0018036:11182-11201 | None:intergenic | 50.0% | |
| TCAAGGGAACTGACCCTCTT+GGG | - | tig0018036:11308-11327 | None:intergenic | 50.0% | |
| TTCAAGGGAACTGACCCTCT+TGG | - | tig0018036:11309-11328 | None:intergenic | 50.0% | |
| !!! | TCCAACCAGCCGGTTTTGAA+GGG | - | tig0018036:11388-11407 | None:intergenic | 50.0% |
| !! | ATCCAACCAGCCGGTTTTGA+AGG | - | tig0018036:11389-11408 | None:intergenic | 50.0% |
| GAACCTTAGAGATGGGAGGA+GGG | - | tig0018036:11493-11512 | None:intergenic | 50.0% | |
| AGAACCTTAGAGATGGGAGG+AGG | - | tig0018036:11494-11513 | None:intergenic | 50.0% | |
| AAGAGGAAGTGAAGAGGGAG+GGG | - | tig0018036:11541-11560 | None:intergenic | 50.0% | |
| ATGAGAATGTGGGCCCAAAC+AGG | - | tig0018036:11669-11688 | None:intergenic | 50.0% | |
| ACTGTGGGTCTCTACGTTTG+GGG | + | tig0018036:12429-12448 | Msa1363220:intron | 50.0% | |
| TGCCATGATTGTGGGAAGTG+AGG | + | tig0018036:13174-13193 | Msa1363220:CDS | 50.0% | |
| GGGAAGTGAGGAAATTTCGG+AGG | + | tig0018036:13186-13205 | Msa1363220:CDS | 50.0% | |
| ! | ACAAGCGTGACGGGAAGTTT+GGG | + | tig0018036:13468-13487 | Msa1363220:CDS | 50.0% |
| !! | ATGCGGGACATTTGCTGTAC+AGG | - | tig0018036:13518-13537 | None:intergenic | 50.0% |
| CAACCAGTTCCTCCTTCTGT+TGG | + | tig0018036:13542-13561 | Msa1363220:CDS | 50.0% | |
| TACCCAACAGAAGGAGGAAC+TGG | - | tig0018036:13548-13567 | None:intergenic | 50.0% | |
| TGTGGTGCATACCCAACAGA+AGG | - | tig0018036:13557-13576 | None:intergenic | 50.0% | |
| ! | TTCTGCCCATATGCTGGTTG+TGG | - | tig0018036:13575-13594 | None:intergenic | 50.0% |
| TTGTGGAGGATAAGCAGCAG+GGG | - | tig0018036:13654-13673 | None:intergenic | 50.0% | |
| GTTGTGGAGGATAAGCAGCA+GGG | - | tig0018036:13655-13674 | None:intergenic | 50.0% | |
| TGTTGTGGAGGATAAGCAGC+AGG | - | tig0018036:13656-13675 | None:intergenic | 50.0% | |
| GCTGCTTATCCTCCACAACA+AGG | + | tig0018036:13656-13675 | Msa1363220:CDS | 50.0% | |
| TTGTGGAGGATAAGCAGCAG+GGG | - | tig0018036:13654-13673 | None:intergenic | 50.0% | |
| CTTGTGGAGGATAAGCAGCA+GGG | - | tig0018036:13688-13707 | None:intergenic | 50.0% | |
| GTTACATGCCCTGCAGTGGT+AGG | + | tig0018036:9564-9583 | Msa1363220:CDS | 55.0% | |
| TCTCCACACCTACCACTGCA+GGG | - | tig0018036:9575-9594 | None:intergenic | 55.0% | |
| TTCTCCACACCTACCACTGC+AGG | - | tig0018036:9576-9595 | None:intergenic | 55.0% | |
| TCCACCCCGCTTGAATCCTA+TGG | + | tig0018036:10386-10405 | Msa1363220:intron | 55.0% | |
| ACCATAGGATTCAAGCGGGG+TGG | - | tig0018036:10390-10409 | None:intergenic | 55.0% | |
| CATTCTGATGCTGGTGCACC+AGG | - | tig0018036:10911-10930 | None:intergenic | 55.0% | |
| ! | GGATGTCCGCCATTGAGTTG+TGG | + | tig0018036:11154-11173 | Msa1363220:intron | 55.0% |
| TGTGGTACCATAGGCCGCAA+TGG | + | tig0018036:11172-11191 | Msa1363220:intron | 55.0% | |
| CTTTGGCAATCCGCCCAAGA+GGG | + | tig0018036:11292-11311 | Msa1363220:intron | 55.0% | |
| GGGTCAGTTCCCTTGAAGTC+AGG | + | tig0018036:11312-11331 | Msa1363220:intron | 55.0% | |
| TCCCTTGAAGTCAGGCAGCT+CGG | + | tig0018036:11320-11339 | Msa1363220:intron | 55.0% | |
| AGAGGACATGTGGGCCAAGA+AGG | - | tig0018036:11346-11365 | None:intergenic | 55.0% | |
| GCCCACATGTCCTCTATCTC+TGG | + | tig0018036:11351-11370 | Msa1363220:intron | 55.0% | |
| TCTCTCCCTTCAAAACCGGC+TGG | + | tig0018036:11380-11399 | Msa1363220:intron | 55.0% | |
| TCCCTTCAAAACCGGCTGGT+TGG | + | tig0018036:11384-11403 | Msa1363220:intron | 55.0% | |
| CATCCCTCCTCCCATCTCTA+AGG | + | tig0018036:11487-11506 | Msa1363220:intron | 55.0% | |
| AGAGGAAGTGAAGAGGGAGG+GGG | - | tig0018036:11540-11559 | None:intergenic | 55.0% | |
| AGGTGACATAGCAGAGGGTG+AGG | - | tig0018036:11593-11612 | None:intergenic | 55.0% | |
| ! | GACAAGCGTGACGGGAAGTT+TGG | + | tig0018036:13467-13486 | Msa1363220:CDS | 55.0% |
| !! | CGGGACATTTGCTGTACAGG+AGG | - | tig0018036:13515-13534 | None:intergenic | 55.0% |
| GGTGCATACCCAACAGAAGG+AGG | - | tig0018036:13554-13573 | None:intergenic | 55.0% | |
| ATAGCCCTGAGCTGGTGGTT+GGG | - | tig0018036:13615-13634 | None:intergenic | 55.0% | |
| TGTGGAGGATAAGCAGCAGG+GGG | - | tig0018036:13653-13672 | None:intergenic | 55.0% | |
| ! | GGGGGATATCCTTGTTGTGG+AGG | - | tig0018036:13668-13687 | None:intergenic | 55.0% |
| GCAGGGGGATATCCTTGTTG+TGG | - | tig0018036:13671-13690 | None:intergenic | 55.0% | |
| TGTGGAGGATAAGCAGCAGG+GGG | - | tig0018036:13653-13672 | None:intergenic | 55.0% | |
| CCTTGTGGAGGATAAGCAGC+AGG | - | tig0018036:13689-13708 | None:intergenic | 55.0% | |
| ! | CCTGCTGCTTATCCTCCACA+AGG | + | tig0018036:13653-13672 | Msa1363220:CDS | 55.0% |
| GAAGGGGGATATCCTTGTGG+AGG | - | tig0018036:13701-13720 | None:intergenic | 55.0% | |
| CCAGAAGGGGGATATCCTTG+TGG | - | tig0018036:13704-13723 | None:intergenic | 55.0% | |
| CCACAAGGATATCCCCCTTC+TGG | + | tig0018036:13701-13720 | Msa1363220:CDS | 55.0% | |
| ! | AGAGAGAAAGCGCGTGGGTG+GGG | - | tig0018036:7750-7769 | None:intergenic | 60.0% |
| ! | GAGAGAGAAAGCGCGTGGGT+GGG | - | tig0018036:7751-7770 | None:intergenic | 60.0% |
| ! | AGAGAGAGAAAGCGCGTGGG+TGG | - | tig0018036:7752-7771 | None:intergenic | 60.0% |
| GCTGGTTACATGCCCTGCAG+TGG | + | tig0018036:9560-9579 | Msa1363220:CDS | 60.0% | |
| ATGCCCTGCAGTGGTAGGTG+TGG | + | tig0018036:9569-9588 | Msa1363220:CDS | 60.0% | |
| !! | CCTCTTGGGCGGATTGCCAA+AGG | - | tig0018036:11294-11313 | None:intergenic | 60.0% |
| CCTTTGGCAATCCGCCCAAG+AGG | + | tig0018036:11291-11310 | Msa1363220:intron | 60.0% | |
| AGGGAACTGACCCTCTTGGG+CGG | - | tig0018036:11305-11324 | None:intergenic | 60.0% | |
| GCCGAGCTGCCTGACTTCAA+GGG | - | tig0018036:11324-11343 | None:intergenic | 60.0% | |
| GAGGAAGTGAAGAGGGAGGG+GGG | - | tig0018036:11539-11558 | None:intergenic | 60.0% | |
| TAGGGTGTGTGCGTGCATGC+AGG | + | tig0018036:13339-13358 | Msa1363220:intron | 60.0% | |
| GTTTGGGCCGCAACCAGTGA+TGG | + | tig0018036:13484-13503 | Msa1363220:CDS | 60.0% | |
| ! | GGCACTGCCATCACTGGTTG+CGG | - | tig0018036:13494-13513 | None:intergenic | 60.0% |
| !! | ACAGGAGGCACTGCCATCAC+TGG | - | tig0018036:13500-13519 | None:intergenic | 60.0% |
| GATAGCCCTGAGCTGGTGGT+TGG | - | tig0018036:13616-13635 | None:intergenic | 60.0% | |
| AGCAGGGGGGTAACCAGTAG+CGG | - | tig0018036:13639-13658 | None:intergenic | 60.0% | |
| GTGGAGGATAAGCAGCAGGG+GGG | - | tig0018036:13652-13671 | None:intergenic | 60.0% | |
| AGGCTCACAGCCGCCAAGTT+TGG | + | tig0018036:14068-14087 | Msa1363220:three_prime_UTR | 60.0% | |
| ! | AGAAAGCGCGTGGGTGGGGT+GGG | - | tig0018036:7746-7765 | None:intergenic | 65.0% |
| GGCCGAGCTGCCTGACTTCA+AGG | - | tig0018036:11325-11344 | None:intergenic | 65.0% | |
| GTCAGGCAGCTCGGCCTTCT+TGG | + | tig0018036:11329-11348 | Msa1363220:intron | 65.0% | |
| TGAGCTGGTGGTTGGGCAGG+TGG | - | tig0018036:13608-13627 | None:intergenic | 65.0% | |
| ACCTGCCCAACCACCAGCTC+AGG | + | tig0018036:13607-13626 | Msa1363220:CDS | 65.0% | |
| CCTGCCCAACCACCAGCTCA+GGG | + | tig0018036:13608-13627 | Msa1363220:CDS | 65.0% | |
| ! | GTAGCGGGATAGCCCTGAGC+TGG | - | tig0018036:13623-13642 | None:intergenic | 65.0% |
| GCTCAGGGCTATCCCGCTAC+TGG | + | tig0018036:13623-13642 | Msa1363220:CDS | 65.0% | |
| GCAGGGGGGTAACCAGTAGC+GGG | - | tig0018036:13638-13657 | None:intergenic | 65.0% | |
| ! | GAAAGCGCGTGGGTGGGGTG+GGG | - | tig0018036:7745-7764 | None:intergenic | 70.0% |
| ! | GAGAAAGCGCGTGGGTGGGG+TGG | - | tig0018036:7747-7766 | None:intergenic | 70.0% |
| CCCTGAGCTGGTGGTTGGGC+AGG | - | tig0018036:13611-13630 | None:intergenic | 70.0% | |
| GCGGGATAGCCCTGAGCTGG+TGG | - | tig0018036:13620-13639 | None:intergenic | 70.0% | |
| ! | GCGCGTGGGTGGGGTGGGGT+GGG | - | tig0018036:7741-7760 | None:intergenic | 80.0% |
| ! | AGCGCGTGGGTGGGGTGGGG+TGG | - | tig0018036:7742-7761 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018036 | gene | 7529 | 14106 | 7529 | ID=Msa1363220;Name=Msa1363220 |
| tig0018036 | mRNA | 7529 | 14106 | 7529 | ID=Msa1363220-mRNA-1;Parent=Msa1363220;Name=Msa1363220-mRNA-1;_AED=0.05;_eAED=0.05;_QI=329|1|1|1|0.75|0.77|9|370|263 |
| tig0018036 | exon | 7529 | 7798 | 7529 | ID=Msa1363220-mRNA-1:exon:13445;Parent=Msa1363220-mRNA-1 |
| tig0018036 | exon | 7907 | 8065 | 7907 | ID=Msa1363220-mRNA-1:exon:13446;Parent=Msa1363220-mRNA-1 |
| tig0018036 | exon | 8172 | 8193 | 8172 | ID=Msa1363220-mRNA-1:exon:13447;Parent=Msa1363220-mRNA-1 |
| tig0018036 | exon | 9410 | 9466 | 9410 | ID=Msa1363220-mRNA-1:exon:13448;Parent=Msa1363220-mRNA-1 |
| tig0018036 | exon | 9547 | 9628 | 9547 | ID=Msa1363220-mRNA-1:exon:13449;Parent=Msa1363220-mRNA-1 |
| tig0018036 | exon | 12784 | 12879 | 12784 | ID=Msa1363220-mRNA-1:exon:13450;Parent=Msa1363220-mRNA-1 |
| tig0018036 | exon | 13127 | 13251 | 13127 | ID=Msa1363220-mRNA-1:exon:13451;Parent=Msa1363220-mRNA-1 |
| tig0018036 | exon | 13342 | 13360 | 13342 | ID=Msa1363220-mRNA-1:exon:13452;Parent=Msa1363220-mRNA-1 |
| tig0018036 | exon | 13446 | 14106 | 13446 | ID=Msa1363220-mRNA-1:exon:13453;Parent=Msa1363220-mRNA-1 |
| tig0018036 | five_prime_UTR | 7529 | 7798 | 7529 | ID=Msa1363220-mRNA-1:five_prime_utr;Parent=Msa1363220-mRNA-1 |
| tig0018036 | five_prime_UTR | 7907 | 7965 | 7907 | ID=Msa1363220-mRNA-1:five_prime_utr;Parent=Msa1363220-mRNA-1 |
| tig0018036 | CDS | 7966 | 8065 | 7966 | ID=Msa1363220-mRNA-1:cds;Parent=Msa1363220-mRNA-1 |
| tig0018036 | CDS | 8172 | 8193 | 8172 | ID=Msa1363220-mRNA-1:cds;Parent=Msa1363220-mRNA-1 |
| tig0018036 | CDS | 9410 | 9466 | 9410 | ID=Msa1363220-mRNA-1:cds;Parent=Msa1363220-mRNA-1 |
| tig0018036 | CDS | 9547 | 9628 | 9547 | ID=Msa1363220-mRNA-1:cds;Parent=Msa1363220-mRNA-1 |
| tig0018036 | CDS | 12784 | 12879 | 12784 | ID=Msa1363220-mRNA-1:cds;Parent=Msa1363220-mRNA-1 |
| tig0018036 | CDS | 13127 | 13251 | 13127 | ID=Msa1363220-mRNA-1:cds;Parent=Msa1363220-mRNA-1 |
| tig0018036 | CDS | 13342 | 13360 | 13342 | ID=Msa1363220-mRNA-1:cds;Parent=Msa1363220-mRNA-1 |
| tig0018036 | CDS | 13446 | 13736 | 13446 | ID=Msa1363220-mRNA-1:cds;Parent=Msa1363220-mRNA-1 |
| tig0018036 | three_prime_UTR | 13737 | 14106 | 13737 | ID=Msa1363220-mRNA-1:three_prime_utr;Parent=Msa1363220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
