AlfalfaGEDB | Msa1085960

M. sativa cultivar zhongmu-4 / Msa1085960

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085960	XP_013447079.1	98.479	263	4	0	1	263	1	263	0.0	531

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085960	B7FIY1	98.479	263	4	0	1	263	1	263	0.0	531

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0158020	Msa1085960	-0.813699	2.243046e-51	-8.615850e-47
Msa0164360	Msa1085960	-0.842992	1.842147e-58	-8.615850e-47
Msa0185640	Msa1085960	0.857654	1.409060e-62	-8.615850e-47
Msa0198440	Msa1085960	-0.811429	7.032258e-51	-8.615850e-47
Msa0258670	Msa1085960	0.811321	7.423529e-51	-8.615850e-47
Msa0260270	Msa1085960	0.800406	1.463053e-48	-8.615850e-47
Msa0265980	Msa1085960	0.825009	5.922226e-54	-8.615850e-47
Msa0270440	Msa1085960	0.823142	1.624096e-53	-8.615850e-47
Msa0278670	Msa1085960	-0.809676	1.682144e-50	-8.615850e-47
Msa0280660	Msa1085960	0.853763	1.926934e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085960	MtrunA17_Chr8g0387261	98.479	263	4	0	1	263	1	263	0.0	531

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1085960	AT4G23470.1	72.308	260	51	5	4	263	3	241	2.77e-134	379
Msa1085960	AT1G63830.1	77.500	240	42	4	2	241	3	230	3.24e-132	373
Msa1085960	AT1G63830.2	77.500	240	42	4	2	241	3	230	3.24e-132	373
Msa1085960	AT1G63830.3	77.500	240	42	4	2	241	3	230	3.24e-132	373
Msa1085960	AT4G23470.3	77.273	220	43	2	4	223	3	215	2.97e-127	361
Msa1085960	AT5G41390.1	77.778	216	47	1	3	218	4	218	1.81e-124	355
Msa1085960	AT1G63830.5	79.897	194	27	4	48	241	1	182	1.12e-104	301
Msa1085960	AT1G63830.4	81.875	160	29	0	2	161	3	162	1.61e-97	283
Msa1085960	AT4G23470.2	71.845	206	37	5	58	263	1	185	2.77e-97	283
Msa1085960	AT5G41390.2	80.124	161	31	1	58	218	1	160	1.18e-91	270

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Find 131 sgRNAs with CRISPR-Local

Find 499 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAACTACTCCCACT+TGG	0.606103	7_2:+86969964	None:intergenic
AAAGTCTTTATATTATTGGC+CGG	0.542798	7_2:-86970121	None:intergenic
AAATTTAGAGCAGTTTGTGT+TGG	0.555860	7_2:+86976189	Msa1085960:three_prime_UTR
AACCAGTTCCTCCTTCTGTT+GGG	0.408203	7_2:+86975990	Msa1085960:CDS
AATATCACACATTAAATCGC+GGG	0.542534	7_2:-86976492	None:intergenic
AATCCCAACGTTTACCAAGT+GGG	0.633212	7_2:-86969978	None:intergenic
ACAAGCGTGACGGGAAGTTT+GGG	0.424681	7_2:+86975915	Msa1085960:CDS
ACAGGAGGCACTGCCATCAC+TGG	0.536277	7_2:-86975944	None:intergenic
ACATATTTCTTGGCCAAACT+TGG	0.405256	7_2:-86976528	None:intergenic
ACCTGCCCAACCACCAGCTC+AGG	0.357224	7_2:+86976054	Msa1085960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGAAAAAGTCGAAAAAC+CGG	+	chr7_2:86970102-86970121	Msa1085960:five_prime_UTR	30.0%
TGTTCTTTCAATCAATCCAA+AGG	-	chr7_2:86970266-86970285	None:intergenic	30.0%
AGAAGAAGAAGAAGAAGAAA+TGG	+	chr7_2:86970394-86970413	Msa1085960:exon	30.0%
TAAAAAGAGTGATGAAAGTG+TGG	-	chr7_2:86970529-86970548	None:intergenic	30.0%
ATAATCACACATGTCAGTAT+TGG	-	chr7_2:86970930-86970949	None:intergenic	30.0%
AATTATTCAGCTTGATCAAC+TGG	-	chr7_2:86971322-86971341	None:intergenic	30.0%
TGAATGAGCATCTAAATTCA+AGG	-	chr7_2:86971504-86971523	None:intergenic	30.0%
TACAAAGAGATACTTGGAAA+TGG	-	chr7_2:86971587-86971606	None:intergenic	30.0%
ACAAAGTACAAAGAGATACT+TGG	-	chr7_2:86971593-86971612	None:intergenic	30.0%
AATGAATCATGAACTGACAA+GGG	-	chr7_2:86971679-86971698	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	86969979	86976553	86969979	ID=Msa1085960;Name=Msa1085960
chr7_2	mRNA	86969979	86976553	86969979	ID=Msa1085960-mRNA-1;Parent=Msa1085960;Name=Msa1085960-mRNA-1;_AED=0.07;_eAED=0.07;_QI=326\|1\|1\|1\|0.75\|0.77\|9\|370\|263
chr7_2	exon	86969979	86970248	86969979	ID=Msa1085960-mRNA-1:exon:23616;Parent=Msa1085960-mRNA-1
chr7_2	exon	86970357	86970512	86970357	ID=Msa1085960-mRNA-1:exon:23617;Parent=Msa1085960-mRNA-1
chr7_2	exon	86970619	86970640	86970619	ID=Msa1085960-mRNA-1:exon:23618;Parent=Msa1085960-mRNA-1
chr7_2	exon	86971857	86971913	86971857	ID=Msa1085960-mRNA-1:exon:23619;Parent=Msa1085960-mRNA-1
chr7_2	exon	86971994	86972075	86971994	ID=Msa1085960-mRNA-1:exon:23620;Parent=Msa1085960-mRNA-1
chr7_2	exon	86975230	86975325	86975230	ID=Msa1085960-mRNA-1:exon:23621;Parent=Msa1085960-mRNA-1
chr7_2	exon	86975574	86975698	86975574	ID=Msa1085960-mRNA-1:exon:23622;Parent=Msa1085960-mRNA-1
chr7_2	exon	86975789	86975807	86975789	ID=Msa1085960-mRNA-1:exon:23623;Parent=Msa1085960-mRNA-1
chr7_2	exon	86975893	86976553	86975893	ID=Msa1085960-mRNA-1:exon:23624;Parent=Msa1085960-mRNA-1
chr7_2	five_prime_UTR	86969979	86970248	86969979	ID=Msa1085960-mRNA-1:five_prime_utr;Parent=Msa1085960-mRNA-1
chr7_2	five_prime_UTR	86970357	86970412	86970357	ID=Msa1085960-mRNA-1:five_prime_utr;Parent=Msa1085960-mRNA-1
chr7_2	CDS	86970413	86970512	86970413	ID=Msa1085960-mRNA-1:cds;Parent=Msa1085960-mRNA-1
chr7_2	CDS	86970619	86970640	86970619	ID=Msa1085960-mRNA-1:cds;Parent=Msa1085960-mRNA-1
chr7_2	CDS	86971857	86971913	86971857	ID=Msa1085960-mRNA-1:cds;Parent=Msa1085960-mRNA-1
chr7_2	CDS	86971994	86972075	86971994	ID=Msa1085960-mRNA-1:cds;Parent=Msa1085960-mRNA-1
chr7_2	CDS	86975230	86975325	86975230	ID=Msa1085960-mRNA-1:cds;Parent=Msa1085960-mRNA-1
chr7_2	CDS	86975574	86975698	86975574	ID=Msa1085960-mRNA-1:cds;Parent=Msa1085960-mRNA-1
chr7_2	CDS	86975789	86975807	86975789	ID=Msa1085960-mRNA-1:cds;Parent=Msa1085960-mRNA-1
chr7_2	CDS	86975893	86976183	86975893	ID=Msa1085960-mRNA-1:cds;Parent=Msa1085960-mRNA-1
chr7_2	three_prime_UTR	86976184	86976553	86976184	ID=Msa1085960-mRNA-1:three_prime_utr;Parent=Msa1085960-mRNA-1

Gene Sequence

>Msa1085960

ATGGCGAATCAGCAGAATCTTGAGAAAATGCAACTCCGGCAGAATTACCGGAATCTATGGCACACTGATCTCATGAGAACTATCCAGGTCGATACTCCATATTGCTGCTTATCCTTGTGGTGTGCGCCATGTGTATCATACTTGCTTCGCAAACGAGCCCTTTATGATGATATGTCAAGATACACATGCTGTGCTGGTTACATGCCCTGCAGTGGTAGGTGTGGAGAAAGTAAATGTCCTGAATTTTGCCTCTGTACTGAGGTTTTTCTCTGCTTTGGAAATTCAGTGGCCTCAACTCGCTTTCTGTTGCAAGATGAATTTAACATTCAAACTACGCAGTGTGATAATTGCATTATTGGTTTCATGCTTTGCCTTAACCAAGTTGCATGCATATTCTCTATTGTTGCCATGATTGTGGGAAGTGAGGAAATTTCGGAGGCTTCTCAAATACTATCTTGTTTGGCTGACCTTGTTTACTGCTCGGTGTGTGCGTGCATGCAGACTCAGCACAAGGTTGAAATGGACAAGCGTGACGGGAAGTTTGGGCCGCAACCAGTGATGGCAGTGCCTCCTGTACAGCAAATGTCCCGCATTGATCAACCAGTTCCTCCTTCTGTTGGGTATGCACCACAACCAGCATATGGGCAGAATTATGGTTATCCACCTGCCCAACCACCAGCTCAGGGCTATCCCGCTACTGGTTACCCCCCTGCTGCTTATCCTCCACAACAAGGATATCCCCCTGCTGCTTATCCTCCACAAGGATATCCCCCTTCTGGTTATTCTAGGTGA

Protein sequence

>Msa1085960

MANQQNLEKMQLRQNYRNLWHTDLMRTIQVDTPYCCLSLWCAPCVSYLLRKRALYDDMSRYTCCAGYMPCSGRCGESKCPEFCLCTEVFLCFGNSVASTRFLLQDEFNIQTTQCDNCIIGFMLCLNQVACIFSIVAMIVGSEEISEASQILSCLADLVYCSVCACMQTQHKVEMDKRDGKFGPQPVMAVPPVQQMSRIDQPVPPSVGYAPQPAYGQNYGYPPAQPPAQGYPATGYPPAAYPPQQGYPPAAYPPQGYPPSGYSR*