Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364380 | XP_003621244.1 | 96.296 | 297 | 11 | 0 | 1 | 297 | 1 | 297 | 0.0 | 595 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364380 | sp|Q9MBG8|AAR3_ARATH | 48.742 | 318 | 112 | 5 | 3 | 298 | 7 | 295 | 1.38e-90 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364380 | G7L1Z9 | 96.296 | 297 | 11 | 0 | 1 | 297 | 1 | 297 | 0.0 | 595 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0116770 | Msa1364380 | 0.827919 | 1.199220e-54 | -8.615850e-47 |
| Msa1364380 | Msa1432230 | 0.804061 | 2.588323e-49 | -8.615850e-47 |
| Msa0663920 | Msa1364380 | 0.819087 | 1.396179e-52 | -8.615850e-47 |
| Msa0691010 | Msa1364380 | 0.808891 | 2.478286e-50 | -8.615850e-47 |
| Msa0777230 | Msa1364380 | 0.802757 | 4.820478e-49 | -8.615850e-47 |
| Msa0165210 | Msa1364380 | 0.825917 | 3.608097e-54 | -8.615850e-47 |
| Msa0165220 | Msa1364380 | 0.809283 | 2.042288e-50 | -8.615850e-47 |
| Msa0171300 | Msa1364380 | 0.811170 | 8.003343e-51 | -8.615850e-47 |
| Msa1230170 | Msa1364380 | 0.804255 | 2.357884e-49 | -8.615850e-47 |
| Msa1251730 | Msa1364380 | 0.807048 | 6.114514e-50 | -8.615850e-47 |
| Msa1284680 | Msa1364380 | 0.804346 | 2.257714e-49 | -8.615850e-47 |
| Msa1075540 | Msa1364380 | 0.805610 | 1.228255e-49 | -8.615850e-47 |
| Msa1174040 | Msa1364380 | 0.806977 | 6.330221e-50 | -8.615850e-47 |
| Msa0554050 | Msa1364380 | 0.808558 | 2.920350e-50 | -8.615850e-47 |
| Msa0942070 | Msa1364380 | 0.805305 | 1.423176e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364380 | MtrunA17_Chr7g0217551 | 96.296 | 297 | 11 | 0 | 1 | 297 | 1 | 297 | 0.0 | 595 |
| Msa1364380 | MtrunA17_Chr2g0310311 | 38.542 | 96 | 58 | 1 | 83 | 177 | 146 | 241 | 1.30e-19 | 87.0 |
| Msa1364380 | MtrunA17_Chr7g0217541 | 82.051 | 39 | 7 | 0 | 305 | 343 | 15 | 53 | 1.00e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364380 | AT3G28970.1 | 48.742 | 318 | 112 | 5 | 3 | 298 | 7 | 295 | 1.40e-91 | 276 |
| Msa1364380 | AT3G28970.2 | 46.541 | 318 | 112 | 6 | 3 | 298 | 7 | 288 | 2.07e-82 | 252 |
| Msa1364380 | AT3G12760.1 | 43.299 | 97 | 54 | 1 | 83 | 178 | 147 | 243 | 1.13e-21 | 92.8 |
Find 81 sgRNAs with CRISPR-Local
Find 387 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGGAAATTAGTTCTTAA+TGG | 0.193823 | tig0018118:+41343 | Msa1364380:CDS |
| CTTCTTATACTCCTCCTTAT+AGG | 0.219752 | tig0018118:+44851 | Msa1364380:CDS |
| CACGATTTGCCATTGGTATT+TGG | 0.232308 | tig0018118:+44743 | Msa1364380:CDS |
| TTCTTTATGTGTCGTGAAAA+TGG | 0.259774 | tig0018118:+41173 | Msa1364380:CDS |
| GAATAGCTTATTTACCTATA+AGG | 0.289528 | tig0018118:-44865 | None:intergenic |
| TCTTTATCAAAGGGATTTGC+AGG | 0.312985 | tig0018118:+44170 | Msa1364380:CDS |
| AAACGCAAAATGTAACAAAA+TGG | 0.318404 | tig0018118:-38372 | None:intergenic |
| CTTGGAAATTAGTTCTTAAT+GGG | 0.328992 | tig0018118:+41344 | Msa1364380:CDS |
| ACTGACACAATTGTCGAAAT+TGG | 0.340203 | tig0018118:+39219 | Msa1364380:CDS |
| TCCGAATCTCTGTCAATTCC+TGG | 0.367693 | tig0018118:+43563 | Msa1364380:CDS |
| CATGTCACGGCTGGGTTTGA+TGG | 0.382201 | tig0018118:+40797 | Msa1364380:CDS |
| GTTTGTGCAGATATAAAATC+AGG | 0.388294 | tig0018118:+39121 | Msa1364380:intron |
| TGCTTGCTCCAACAACTTTG+AGG | 0.417833 | tig0018118:+38432 | Msa1364380:five_prime_UTR |
| GTCAATGCTCATGTCACGGC+TGG | 0.427689 | tig0018118:+40788 | Msa1364380:CDS |
| TCCTCTGCTGCATTCCCTTG+TGG | 0.433158 | tig0018118:-44080 | None:intergenic |
| AAGTCCCAATGTTCAGTTGA+AGG | 0.434913 | tig0018118:+44146 | Msa1364380:CDS |
| GGAAGCAAGAAAAGACGATA+TGG | 0.438124 | tig0018118:+43974 | Msa1364380:CDS |
| ATCTGAGGATACGTGGCAAC+AGG | 0.440502 | tig0018118:+41778 | Msa1364380:CDS |
| ACAAAATCATCAATTAAAAC+AGG | 0.442458 | tig0018118:-42095 | None:intergenic |
| GCATTTGTTGTTGGTGAAGA+AGG | 0.443323 | tig0018118:+39148 | Msa1364380:CDS |
| AACAATACCTTCAGGATCAT+AGG | 0.449382 | tig0018118:-41840 | None:intergenic |
| GATTGTTACCACAAAATCTT+CGG | 0.449593 | tig0018118:-38502 | None:intergenic |
| AAGCTTGCCCTCAAAGTTGT+TGG | 0.450963 | tig0018118:-38440 | None:intergenic |
| TTCAGAAGGCGAAGGTTTCA+AGG | 0.456338 | tig0018118:+39191 | Msa1364380:CDS |
| GTTGAAGGTTCTTTATCAAA+GGG | 0.457296 | tig0018118:+44161 | Msa1364380:CDS |
| AGAACCTTCAACTGAACATT+GGG | 0.463296 | tig0018118:-44150 | None:intergenic |
| TCAGGACATGCATTTGTTGT+TGG | 0.472036 | tig0018118:+39139 | Msa1364380:CDS |
| GCTTGCTCCAACAACTTTGA+GGG | 0.481301 | tig0018118:+38433 | Msa1364380:five_prime_UTR |
| AACATACCCTGTACAAACTC+TGG | 0.484998 | tig0018118:-39248 | None:intergenic |
| AATCGTGGAACTTGCTCCAT+TGG | 0.485280 | tig0018118:-44727 | None:intergenic |
| GAATGCAGCAGAGGAATGTA+TGG | 0.488094 | tig0018118:+44088 | Msa1364380:CDS |
| AGTTGAAGGTTCTTTATCAA+AGG | 0.491994 | tig0018118:+44160 | Msa1364380:CDS |
| GGTTTCCACTGCTTCAGCCA+TGG | 0.492666 | tig0018118:+41368 | Msa1364380:CDS |
| TTCAACTGAACATTGGGACT+TGG | 0.500557 | tig0018118:-44144 | None:intergenic |
| CAAGTTCCACGATTTGCCAT+TGG | 0.501622 | tig0018118:+44736 | Msa1364380:CDS |
| ACCAGGAATTGACAGAGATT+CGG | 0.502635 | tig0018118:-43564 | None:intergenic |
| GAACCGAGAAAACTCTGAAA+AGG | 0.506314 | tig0018118:-41138 | None:intergenic |
| TAAGCAAGGCACTAACTGCT+TGG | 0.506583 | tig0018118:+41326 | Msa1364380:CDS |
| GTGGAGTCCAGAGTTTGTAC+AGG | 0.507337 | tig0018118:+39241 | Msa1364380:CDS |
| TTATTGTCCTGCAGGCTACC+AGG | 0.513329 | tig0018118:+43497 | Msa1364380:intron |
| AAGAACCTTCAACTGAACAT+TGG | 0.530073 | tig0018118:-44151 | None:intergenic |
| TTTGAGGGCAAGCTTCTCCA+TGG | 0.534764 | tig0018118:+38448 | Msa1364380:exon |
| ACTGAGGGTTTCAACGGAGA+AGG | 0.536632 | tig0018118:-44827 | None:intergenic |
| ATAGGGCTATTATGTCTACT+AGG | 0.538907 | tig0018118:-44113 | None:intergenic |
| GAGGAGTATAAGAAGAACTG+AGG | 0.540433 | tig0018118:-44843 | None:intergenic |
| TCAATGCTCATGTCACGGCT+GGG | 0.551273 | tig0018118:+40789 | Msa1364380:CDS |
| ATAATTTACAGCTGTAAGCA+AGG | 0.552826 | tig0018118:+41312 | Msa1364380:intron |
| ATCGAAGAGAGATGCATCCA+TGG | 0.553096 | tig0018118:-38465 | None:intergenic |
| CTGAGGGTTTCAACGGAGAA+GGG | 0.560120 | tig0018118:-44826 | None:intergenic |
| TCCAACATCCACTGTAACTG+TGG | 0.568417 | tig0018118:+43536 | Msa1364380:CDS |
| GACACAATTGTCGAAATTGG+TGG | 0.569386 | tig0018118:+39222 | Msa1364380:CDS |
| AGGAGTATAAGAAGAACTGA+GGG | 0.570503 | tig0018118:-44842 | None:intergenic |
| GCCATGGTGTGACTTTGTTG+AGG | 0.576084 | tig0018118:+41384 | Msa1364380:CDS |
| CATTTGTTGTTGGTGAAGAA+GGG | 0.577921 | tig0018118:+39149 | Msa1364380:CDS |
| TCAGAAGGCGAAGGTTTCAA+GGG | 0.579351 | tig0018118:+39192 | Msa1364380:CDS |
| TCACACCATGGCTGAAGCAG+TGG | 0.579870 | tig0018118:-41373 | None:intergenic |
| TGGGACTTGGATGAACACAT+AGG | 0.583291 | tig0018118:-44131 | None:intergenic |
| TTCTTGCTTCCAAATACCAA+TGG | 0.585289 | tig0018118:-44752 | None:intergenic |
| AACTGTCAATGCTCATGTCA+CGG | 0.588853 | tig0018118:+40784 | Msa1364380:CDS |
| AGAAGAACTGAGGGTTTCAA+CGG | 0.589182 | tig0018118:-44833 | None:intergenic |
| ACCACAGTTACAGTGGATGT+TGG | 0.592385 | tig0018118:-43537 | None:intergenic |
| GGGACTTGGATGAACACATA+GGG | 0.595755 | tig0018118:-44130 | None:intergenic |
| TAGCTTATTTACCTATAAGG+AGG | 0.603340 | tig0018118:-44862 | None:intergenic |
| TCCACAAGGGAATGCAGCAG+AGG | 0.604535 | tig0018118:+44079 | Msa1364380:CDS |
| CTAGATGCCTATGATCCTGA+AGG | 0.604779 | tig0018118:+41833 | Msa1364380:CDS |
| AGCACCTACTCATATTGTTG+AGG | 0.611422 | tig0018118:+44774 | Msa1364380:CDS |
| TTGTTGGAGCAAGCAGAGAG+AGG | 0.611608 | tig0018118:-38424 | None:intergenic |
| GGAAATTAGTTCTTAATGGG+CGG | 0.614712 | tig0018118:+41347 | Msa1364380:CDS |
| CAAATACCAATGGCAAATCG+TGG | 0.625163 | tig0018118:-44742 | None:intergenic |
| TTGGAGCAAGCAGAGAGAGG+AGG | 0.631695 | tig0018118:-38421 | None:intergenic |
| TCTAAAGAGGAAGTTAGCTG+AGG | 0.640393 | tig0018118:+43953 | Msa1364380:CDS |
| GAAGGCGAAGGTTTCAAGGG+AGG | 0.640472 | tig0018118:+39195 | Msa1364380:CDS |
| TGGAGTCCAGAGTTTGTACA+GGG | 0.641534 | tig0018118:+39242 | Msa1364380:CDS |
| TCAAAGATACAACATATCTG+AGG | 0.648513 | tig0018118:+41763 | Msa1364380:CDS |
| CGGAATCACCACAGTTACAG+TGG | 0.649071 | tig0018118:-43544 | None:intergenic |
| TTATGGTGTAGTAGATTGTG+AGG | 0.649145 | tig0018118:+44052 | Msa1364380:CDS |
| TGCTCCTCAACAATATGAGT+AGG | 0.665174 | tig0018118:-44778 | None:intergenic |
| GATTGTGAGGACAATCCACA+AGG | 0.669114 | tig0018118:+44065 | Msa1364380:CDS |
| ACAACATATCTGAGGATACG+TGG | 0.682984 | tig0018118:+41771 | Msa1364380:CDS |
| ACCTCAACAAAGTCACACCA+TGG | 0.717123 | tig0018118:-41385 | None:intergenic |
| ATTGTGAGGACAATCCACAA+GGG | 0.748048 | tig0018118:+44066 | Msa1364380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTTTACATTTATAATT+CGG | - | tig0018118:38337-38356 | None:intergenic | 10.0% |
| !!! | ATTGTTTAATTTTAATATCA+TGG | + | tig0018118:38625-38644 | Msa1364380:intron | 10.0% |
| !!! | TAATTAATATTTGTTTGTTT+TGG | + | tig0018118:42296-42315 | Msa1364380:intron | 10.0% |
| !!! | TAATTTTTTAAGTTGAATTT+CGG | + | tig0018118:43240-43259 | Msa1364380:intron | 10.0% |
| !! | CAATAAATACATTCATATTA+GGG | - | tig0018118:39085-39104 | None:intergenic | 15.0% |
| !! | ACAATAAATACATTCATATT+AGG | - | tig0018118:39086-39105 | None:intergenic | 15.0% |
| !! | TAATTAATCTAGAAAAAGAA+AGG | - | tig0018118:40012-40031 | None:intergenic | 15.0% |
| !!! | AAAAAATTTCTTCTTTGTTT+GGG | - | tig0018118:40928-40947 | None:intergenic | 15.0% |
| !! | TAAAAAATTTCTTCTTTGTT+TGG | - | tig0018118:40929-40948 | None:intergenic | 15.0% |
| !! | TTATCAAATATTGAAAACAA+AGG | - | tig0018118:41296-41315 | None:intergenic | 15.0% |
| !! | GATGATAAAATTATTATTGT+TGG | + | tig0018118:42192-42211 | Msa1364380:intron | 15.0% |
| !! | TGCATGATAAATTAAAGAAT+TGG | - | tig0018118:38538-38557 | None:intergenic | 20.0% |
| !! | AAAGAAAAACAAACAAGAAT+TGG | - | tig0018118:38561-38580 | None:intergenic | 20.0% |
| !!! | ATTCTTGTTTGTTTTTCTTT+TGG | + | tig0018118:38561-38580 | Msa1364380:intron | 20.0% |
| !! | TTAACACAGAAATTAAAATC+TGG | + | tig0018118:39009-39028 | Msa1364380:intron | 20.0% |
| !! | TAAATCATATTATTGCAACT+GGG | - | tig0018118:39430-39449 | None:intergenic | 20.0% |
| !! | ATAAATCATATTATTGCAAC+TGG | - | tig0018118:39431-39450 | None:intergenic | 20.0% |
| !! | CAATAAATTAGTATCAAACT+TGG | - | tig0018118:39501-39520 | None:intergenic | 20.0% |
| !! | GATACATTGTTATATATCTT+CGG | + | tig0018118:39839-39858 | Msa1364380:intron | 20.0% |
| !!! | ATTTTGATTCAAATGAAAAC+TGG | - | tig0018118:40218-40237 | None:intergenic | 20.0% |
| !!! | TTTTTTACAATTTGAGGTTT+CGG | + | tig0018118:40456-40475 | Msa1364380:intron | 20.0% |
| !!! | ATTTTTTTAACCCTGATATA+GGG | + | tig0018118:41579-41598 | Msa1364380:intron | 20.0% |
| !!! | TATTTTCATTTAGTGTCTAT+TGG | + | tig0018118:41709-41728 | Msa1364380:intron | 20.0% |
| !!! | ATTTTCATTTAGTGTCTATT+GGG | + | tig0018118:41710-41729 | Msa1364380:intron | 20.0% |
| !!! | TTTTTTTTTTTTGTGCTTGT+AGG | + | tig0018118:42065-42084 | Msa1364380:intron | 20.0% |
| !! | ACAAAATCATCAATTAAAAC+AGG | - | tig0018118:42098-42117 | None:intergenic | 20.0% |
| !!! | AATGTTGATAAGTATGATTT+AGG | + | tig0018118:42429-42448 | Msa1364380:intron | 20.0% |
| !!! | ATGTTGATAAGTATGATTTA+GGG | + | tig0018118:42430-42449 | Msa1364380:intron | 20.0% |
| !!! | GAATGTATTTCATCATATTT+TGG | + | tig0018118:42503-42522 | Msa1364380:intron | 20.0% |
| !! | GACCTATTTATTAATCTTAT+GGG | - | tig0018118:42553-42572 | None:intergenic | 20.0% |
| !! | CATAAGATTAATAAATAGGT+CGG | + | tig0018118:42552-42571 | Msa1364380:intron | 20.0% |
| !!! | CTATAATTCTTATTTCATCT+AGG | - | tig0018118:42970-42989 | None:intergenic | 20.0% |
| !! | AAGATAAGTGACTTATAATT+TGG | + | tig0018118:43072-43091 | Msa1364380:intron | 20.0% |
| !!! | ACATCTTTTAACTAGTTTTT+TGG | + | tig0018118:43187-43206 | Msa1364380:intron | 20.0% |
| !! | AAATTATTAAAAGATAGGAG+TGG | - | tig0018118:43226-43245 | None:intergenic | 20.0% |
| !!! | TAAACACTTGTATGATTTTT+TGG | + | tig0018118:43695-43714 | Msa1364380:intron | 20.0% |
| !!! | AAACACTTGTATGATTTTTT+GGG | + | tig0018118:43696-43715 | Msa1364380:intron | 20.0% |
| !! | TTGTGAAAATAAGTTAAAAG+CGG | - | tig0018118:43758-43777 | None:intergenic | 20.0% |
| !!! | CTGTTTTCATATAAGTTATT+TGG | - | tig0018118:43786-43805 | None:intergenic | 20.0% |
| !! | GTATATACTTAAACCATAAA+AGG | - | tig0018118:44262-44281 | None:intergenic | 20.0% |
| ! | AAACGCAAAATGTAACAAAA+TGG | - | tig0018118:38375-38394 | None:intergenic | 25.0% |
| ! | AAATCATATTATTGCAACTG+GGG | - | tig0018118:39429-39448 | None:intergenic | 25.0% |
| !!! | ATGATTTATTTTGCTGTTTG+TGG | + | tig0018118:39442-39461 | Msa1364380:intron | 25.0% |
| ! | AAAACCTTAGATCATATCAT+GGG | - | tig0018118:39671-39690 | None:intergenic | 25.0% |
| ! | AAAAATTAAATGCTTGAGCA+CGG | - | tig0018118:39888-39907 | None:intergenic | 25.0% |
| !!! | TAATAAAGTGCTTTTTAACG+AGG | + | tig0018118:39915-39934 | Msa1364380:intron | 25.0% |
| ! | AAATTAAAACTTATGCTGCT+GGG | - | tig0018118:39961-39980 | None:intergenic | 25.0% |
| ! | AAAATTAAAACTTATGCTGC+TGG | - | tig0018118:39962-39981 | None:intergenic | 25.0% |
| ! | TACAACTTACTAGTAATTCA+AGG | - | tig0018118:40172-40191 | None:intergenic | 25.0% |
| ! | AAGTTGTATCAGATATTGAA+AGG | + | tig0018118:40184-40203 | Msa1364380:intron | 25.0% |
| ! | TCATTTGAATCAAAATTAGC+TGG | + | tig0018118:40222-40241 | Msa1364380:intron | 25.0% |
| ! | ACTGAATGTGGTAAAAAAAA+CGG | - | tig0018118:40830-40849 | None:intergenic | 25.0% |
| !! | GTTCTATTCAATCCTTTTAA+TGG | + | tig0018118:41242-41261 | Msa1364380:intron | 25.0% |
| !! | CTTGGAAATTAGTTCTTAAT+GGG | + | tig0018118:41344-41363 | Msa1364380:CDS | 25.0% |
| !! | ACAGATCTTTTATAACATTC+TGG | - | tig0018118:41495-41514 | None:intergenic | 25.0% |
| ! | AGAATGTTATAAAAGATCTG+TGG | + | tig0018118:41494-41513 | Msa1364380:intron | 25.0% |
| !!! | GATTTTTTTAACCCTGATAT+AGG | + | tig0018118:41578-41597 | Msa1364380:intron | 25.0% |
| ! | TTCTTGAATATGATTACTTG+AGG | + | tig0018118:41980-41999 | Msa1364380:intron | 25.0% |
| !!! | TATTTCATCATATTTTGGAC+AGG | + | tig0018118:42508-42527 | Msa1364380:intron | 25.0% |
| !!! | ATTTCATCATATTTTGGACA+GGG | + | tig0018118:42509-42528 | Msa1364380:intron | 25.0% |
| ! | GTCCCATAAGATTAATAAAT+AGG | + | tig0018118:42548-42567 | Msa1364380:intron | 25.0% |
| ! | CGACCTATTTATTAATCTTA+TGG | - | tig0018118:42554-42573 | None:intergenic | 25.0% |
| !! | TGACAAAATTTTGCAATTAG+TGG | + | tig0018118:42866-42885 | Msa1364380:intron | 25.0% |
| ! | TGTAAGATAATTATGAGTGT+AGG | + | tig0018118:43318-43337 | Msa1364380:intron | 25.0% |
| ! | CTGATATATTAGAATCCATT+TGG | + | tig0018118:43643-43662 | Msa1364380:intron | 25.0% |
| ! | ATATTAGAATCCATTTGGAT+TGG | + | tig0018118:43648-43667 | Msa1364380:intron | 25.0% |
| ! | AATAAGTTAAAAGCGGTTTA+TGG | - | tig0018118:43751-43770 | None:intergenic | 25.0% |
| !!! | TCTACTTTTTTTACAGTTTG+AGG | - | tig0018118:44030-44049 | None:intergenic | 25.0% |
| ! | TGTAAAAAAAGTAGAGCTTA+TGG | + | tig0018118:44035-44054 | Msa1364380:CDS | 25.0% |
| !!! | GCACTTTTTCATTATTTCTA+TGG | + | tig0018118:44340-44359 | Msa1364380:intron | 25.0% |
| ! | ATTGCACTTCTCATTATTTA+TGG | + | tig0018118:44464-44483 | Msa1364380:intron | 25.0% |
| ! | ATTATGTGACATAATACAGT+TGG | - | tig0018118:44616-44635 | None:intergenic | 25.0% |
| ! | AACATTTACCGAAGATTTTG+TGG | + | tig0018118:38494-38513 | Msa1364380:CDS | 30.0% |
| GATTGTTACCACAAAATCTT+CGG | - | tig0018118:38505-38524 | None:intergenic | 30.0% | |
| AGAATACAGTGATTGAAATC+TGG | + | tig0018118:38776-38795 | Msa1364380:intron | 30.0% | |
| ATACAGGAAACTAAGTGATT+GGG | + | tig0018118:38799-38818 | Msa1364380:intron | 30.0% | |
| TTTCGTAAGAAACCATTGTT+CGG | + | tig0018118:38915-38934 | Msa1364380:intron | 30.0% | |
| GTTTGTGCAGATATAAAATC+AGG | + | tig0018118:39121-39140 | Msa1364380:intron | 30.0% | |
| CAATATACATTGTCACAAGA+CGG | - | tig0018118:39287-39306 | None:intergenic | 30.0% | |
| !!! | CAACTGGGGTTTTAAATAAA+AGG | - | tig0018118:39415-39434 | None:intergenic | 30.0% |
| !!! | ATTTTGCTGTTTGTGGTTAT+TGG | + | tig0018118:39449-39468 | Msa1364380:intron | 30.0% |
| !!! | TTTTGCTGTTTGTGGTTATT+GGG | + | tig0018118:39450-39469 | Msa1364380:intron | 30.0% |
| TATGAATTCTGTTGCGTTAA+CGG | + | tig0018118:39541-39560 | Msa1364380:intron | 30.0% | |
| CAAAACCTTAGATCATATCA+TGG | - | tig0018118:39672-39691 | None:intergenic | 30.0% | |
| ATTATAAGTACTATGCTGCT+AGG | + | tig0018118:39729-39748 | Msa1364380:intron | 30.0% | |
| AATTGTTGCTGCATATAAGT+AGG | + | tig0018118:40037-40056 | Msa1364380:intron | 30.0% | |
| AAAAATTCCAAATGCATGAC+TGG | + | tig0018118:40285-40304 | Msa1364380:intron | 30.0% | |
| AGAAGACTGTTAGATTTACT+TGG | - | tig0018118:40330-40349 | None:intergenic | 30.0% | |
| AGTTGATCATCATCTCATAA+GGG | - | tig0018118:40412-40431 | None:intergenic | 30.0% | |
| !! | TGTGTTTGTTACTATTTCTG+TGG | + | tig0018118:40431-40450 | Msa1364380:intron | 30.0% |
| !! | GTGTTTGTTACTATTTCTGT+GGG | + | tig0018118:40432-40451 | Msa1364380:intron | 30.0% |
| !!! | GTGGGATTTTTTACAATTTG+AGG | + | tig0018118:40450-40469 | Msa1364380:intron | 30.0% |
| ! | AATTTGAGGTTTCGGTATAT+CGG | + | tig0018118:40464-40483 | Msa1364380:intron | 30.0% |
| ACATGACAAAGACAACAATA+AGG | - | tig0018118:40622-40641 | None:intergenic | 30.0% | |
| AATCGCATGATTGTATTAAG+TGG | + | tig0018118:40699-40718 | Msa1364380:intron | 30.0% | |
| ATCGCATGATTGTATTAAGT+GGG | + | tig0018118:40700-40719 | Msa1364380:intron | 30.0% | |
| ! | ATTTCACGTGTCAAATTTTC+AGG | + | tig0018118:40745-40764 | Msa1364380:intron | 30.0% |
| ! | TTTCACGTGTCAAATTTTCA+GGG | + | tig0018118:40746-40765 | Msa1364380:intron | 30.0% |
| GTAGACAGAAAATGTTATGT+TGG | - | tig0018118:40873-40892 | None:intergenic | 30.0% | |
| TGTGCATTCTCTATATTATG+AGG | + | tig0018118:41014-41033 | Msa1364380:intron | 30.0% | |
| TTCTTTATGTGTCGTGAAAA+TGG | + | tig0018118:41173-41192 | Msa1364380:CDS | 30.0% | |
| CATTCTACTTCACCATTAAA+AGG | - | tig0018118:41257-41276 | None:intergenic | 30.0% | |
| ATAATTTACAGCTGTAAGCA+AGG | + | tig0018118:41312-41331 | Msa1364380:intron | 30.0% | |
| ! | GCTTGGAAATTAGTTCTTAA+TGG | + | tig0018118:41343-41362 | Msa1364380:CDS | 30.0% |
| TAAGTACTTCGAATTCAACA+AGG | - | tig0018118:41443-41462 | None:intergenic | 30.0% | |
| ACTTATATCTCATGAGTCAA+AGG | + | tig0018118:41458-41477 | Msa1364380:intron | 30.0% | |
| TCAAAGATACAACATATCTG+AGG | + | tig0018118:41763-41782 | Msa1364380:CDS | 30.0% | |
| CTAAATATTATACTCCACCT+AGG | - | tig0018118:42339-42358 | None:intergenic | 30.0% | |
| TAAAGAGAACATATCAGAAC+TGG | - | tig0018118:42390-42409 | None:intergenic | 30.0% | |
| TTGCTTACTTGTCCATAAAA+TGG | - | tig0018118:42465-42484 | None:intergenic | 30.0% | |
| GACAAGTAAGCAAATTTCAA+GGG | + | tig0018118:42472-42491 | Msa1364380:intron | 30.0% | |
| ACAAGTAAGCAAATTTCAAG+GGG | + | tig0018118:42473-42492 | Msa1364380:intron | 30.0% | |
| CCAAAAAGTCAAACAAATAC+AGG | - | tig0018118:42593-42612 | None:intergenic | 30.0% | |
| !! | CCTGTATTTGTTTGACTTTT+TGG | + | tig0018118:42590-42609 | Msa1364380:intron | 30.0% |
| !!! | ACTTTTTGGAACTTCTAGAT+GGG | + | tig0018118:42604-42623 | Msa1364380:intron | 30.0% |
| CTGTAGCAATTATAGATTTC+AGG | - | tig0018118:42696-42715 | None:intergenic | 30.0% | |
| TCTATAATTGCTACAGATTC+AGG | + | tig0018118:42700-42719 | Msa1364380:intron | 30.0% | |
| AAATAGAGTGAGTTATGTCA+TGG | + | tig0018118:42777-42796 | Msa1364380:intron | 30.0% | |
| ! | AATTCGGTGAAGTTTATCAT+TGG | - | tig0018118:43125-43144 | None:intergenic | 30.0% |
| TCCTAAATGCTTGTTCAATT+CGG | - | tig0018118:43141-43160 | None:intergenic | 30.0% | |
| ! | AAATTTTCACTCATGACTGA+AGG | + | tig0018118:43282-43301 | Msa1364380:intron | 30.0% |
| ! | AATTTTCACTCATGACTGAA+GGG | + | tig0018118:43283-43302 | Msa1364380:intron | 30.0% |
| TTCTCTGTTGAATTTGTATG+TGG | + | tig0018118:43347-43366 | Msa1364380:intron | 30.0% | |
| ! | AAGTTTCGCAACCTAATTTT+AGG | + | tig0018118:43402-43421 | Msa1364380:intron | 30.0% |
| AATAACGAGTGCCTAAAATT+AGG | - | tig0018118:43416-43435 | None:intergenic | 30.0% | |
| TTGATAAATGTTGAACTCAC+TGG | + | tig0018118:43435-43454 | Msa1364380:intron | 30.0% | |
| CAATAAACTAATCAAAGGTC+AGG | - | tig0018118:43483-43502 | None:intergenic | 30.0% | |
| CAGGACAATAAACTAATCAA+AGG | - | tig0018118:43488-43507 | None:intergenic | 30.0% | |
| AGTTGAAGGTTCTTTATCAA+AGG | + | tig0018118:44160-44179 | Msa1364380:CDS | 30.0% | |
| GTTGAAGGTTCTTTATCAAA+GGG | + | tig0018118:44161-44180 | Msa1364380:CDS | 30.0% | |
| !! | TTTAGATGAAGCACCTTTTA+TGG | + | tig0018118:44246-44265 | Msa1364380:intron | 30.0% |
| AAATACATTCGACTAGCAAA+AGG | - | tig0018118:44290-44309 | None:intergenic | 30.0% | |
| ! | GCATCGATATTTCATATTGA+AGG | - | tig0018118:44702-44721 | None:intergenic | 30.0% |
| AGTGATTGAAATCTGGATAC+AGG | + | tig0018118:38783-38802 | Msa1364380:intron | 35.0% | |
| GATACAGGAAACTAAGTGAT+TGG | + | tig0018118:38798-38817 | Msa1364380:intron | 35.0% | |
| TTCGTAAGAAACCATTGTTC+GGG | + | tig0018118:38916-38935 | Msa1364380:intron | 35.0% | |
| TGATAACCTAAAGTTCGATC+GGG | - | tig0018118:38961-38980 | None:intergenic | 35.0% | |
| CTGATAACCTAAAGTTCGAT+CGG | - | tig0018118:38962-38981 | None:intergenic | 35.0% | |
| ! | GATCGAACTTTAGGTTATCA+GGG | + | tig0018118:38961-38980 | Msa1364380:intron | 35.0% |
| !! | CATTTGTTGTTGGTGAAGAA+GGG | + | tig0018118:39149-39168 | Msa1364380:CDS | 35.0% |
| ! | ACAAGACAGTGATTTTCAGA+AGG | + | tig0018118:39177-39196 | Msa1364380:CDS | 35.0% |
| ACTGACACAATTGTCGAAAT+TGG | + | tig0018118:39219-39238 | Msa1364380:CDS | 35.0% | |
| TTGTGGTTATTGGGTAATCT+AGG | + | tig0018118:39459-39478 | Msa1364380:intron | 35.0% | |
| ! | TGCTTTCTAGATCACAGTTT+TGG | + | tig0018118:39622-39641 | Msa1364380:intron | 35.0% |
| ! | GAACTGGGGCTTTATATAAA+AGG | - | tig0018118:39649-39668 | None:intergenic | 35.0% |
| TAGATCATATCATGGGAACT+GGG | - | tig0018118:39664-39683 | None:intergenic | 35.0% | |
| TTAGATCATATCATGGGAAC+TGG | - | tig0018118:39665-39684 | None:intergenic | 35.0% | |
| AGTTCCCATGATATGATCTA+AGG | + | tig0018118:39664-39683 | Msa1364380:intron | 35.0% | |
| CTGTTAGATTTACTTGGAAC+TGG | - | tig0018118:40324-40343 | None:intergenic | 35.0% | |
| CAGTTGATCATCATCTCATA+AGG | - | tig0018118:40413-40432 | None:intergenic | 35.0% | |
| TCGGTATATCGGAAAAATGA+AGG | + | tig0018118:40475-40494 | Msa1364380:intron | 35.0% | |
| TGACAAAGACAACAATAAGG+TGG | - | tig0018118:40619-40638 | None:intergenic | 35.0% | |
| ! | TCTTTGTTTGGGAAAAGAAC+AGG | - | tig0018118:40917-40936 | None:intergenic | 35.0% |
| TCCAAAAGTGAAATTTCGAG+AGG | + | tig0018118:40990-41009 | Msa1364380:intron | 35.0% | |
| ! | ACCTCTCGAAATTTCACTTT+TGG | - | tig0018118:40994-41013 | None:intergenic | 35.0% |
| ! | CAACCTTTTCAGAGTTTTCT+CGG | + | tig0018118:41135-41154 | Msa1364380:CDS | 35.0% |
| GAAGTAGAATGTATAACCAC+TGG | + | tig0018118:41266-41285 | Msa1364380:intron | 35.0% | |
| ! | GGAAATTAGTTCTTAATGGG+CGG | + | tig0018118:41347-41366 | Msa1364380:CDS | 35.0% |
| TATATCTCATGAGTCAAAGG+TGG | + | tig0018118:41461-41480 | Msa1364380:intron | 35.0% | |
| TTTAACCCTGATATAGGGTT+AGG | + | tig0018118:41584-41603 | Msa1364380:intron | 35.0% | |
| TTAACCCTGATATAGGGTTA+GGG | + | tig0018118:41585-41604 | Msa1364380:intron | 35.0% | |
| ! | TCCCATTTTATATAACCCGT+GGG | + | tig0018118:41653-41672 | Msa1364380:intron | 35.0% |
| ACTAGGTTGTATAGATGGAT+TGG | - | tig0018118:41679-41698 | None:intergenic | 35.0% | |
| ATCCATCTATACAACCTAGT+AGG | + | tig0018118:41679-41698 | Msa1364380:intron | 35.0% | |
| TCCATCTATACAACCTAGTA+GGG | + | tig0018118:41680-41699 | Msa1364380:intron | 35.0% | |
| GAAAATAACAAGACCCTACT+AGG | - | tig0018118:41696-41715 | None:intergenic | 35.0% | |
| AACAATACCTTCAGGATCAT+AGG | - | tig0018118:41843-41862 | None:intergenic | 35.0% | |
| ATGATGAGAACAATACCTTC+AGG | - | tig0018118:41851-41870 | None:intergenic | 35.0% | |
| TTCTAATCCAAACAGACATG+CGG | - | tig0018118:41958-41977 | None:intergenic | 35.0% | |
| ! | ATTTTGTCGAGCATATGTAC+AGG | + | tig0018118:42111-42130 | Msa1364380:CDS | 35.0% |
| GTACAGGTTAGGTTTCTTTA+TGG | + | tig0018118:42127-42146 | Msa1364380:intron | 35.0% | |
| ! | TAGTTTTTGATAGAGCCTGA+TGG | + | tig0018118:42229-42248 | Msa1364380:intron | 35.0% |
| ATGTATCAATCAATGCCATC+AGG | - | tig0018118:42247-42266 | None:intergenic | 35.0% | |
| !! | TAGTCCTCTAAGATGCTAAA+TGG | + | tig0018118:42268-42287 | Msa1364380:intron | 35.0% |
| !! | GGGTTGTTGTTACCATTTTA+TGG | + | tig0018118:42450-42469 | Msa1364380:intron | 35.0% |
| GGACAAGTAAGCAAATTTCA+AGG | + | tig0018118:42471-42490 | Msa1364380:intron | 35.0% | |
| !!! | GACTTTTTGGAACTTCTAGA+TGG | + | tig0018118:42603-42622 | Msa1364380:intron | 35.0% |
| ! | TCTTGAATTTTGCATGCTAG+TGG | + | tig0018118:42649-42668 | Msa1364380:intron | 35.0% |
| AATCTCAAGTCATCAACATC+TGG | - | tig0018118:42738-42757 | None:intergenic | 35.0% | |
| GTTGTTTGATTGCATGATTG+AGG | + | tig0018118:42799-42818 | Msa1364380:intron | 35.0% | |
| ! | TCTAAAATTCACACGATCGA+CGG | - | tig0018118:42944-42963 | None:intergenic | 35.0% |
| CAATTCAGACAGAAAGAACA+AGG | + | tig0018118:42999-43018 | Msa1364380:intron | 35.0% | |
| CTAACCTATGTGAGTGATAT+GGG | - | tig0018118:43029-43048 | None:intergenic | 35.0% | |
| ACTAACCTATGTGAGTGATA+TGG | - | tig0018118:43030-43049 | None:intergenic | 35.0% | |
| ACTTATCTTCTTCATGAGCA+AGG | - | tig0018118:43061-43080 | None:intergenic | 35.0% | |
| ATTTGGAGATGTTCGATACT+TGG | + | tig0018118:43089-43108 | Msa1364380:intron | 35.0% | |
| ACCGAATTGAACAAGCATTT+AGG | + | tig0018118:43137-43156 | Msa1364380:intron | 35.0% | |
| ATTAAAAGATAGGAGTGGCA+AGG | - | tig0018118:43221-43240 | None:intergenic | 35.0% | |
| ! | ATTTTCACTCATGACTGAAG+GGG | + | tig0018118:43284-43303 | Msa1364380:intron | 35.0% |
| TAAACTAATCAAAGGTCAGG+AGG | - | tig0018118:43480-43499 | None:intergenic | 35.0% | |
| !! | TGATTAGTTTATTGTCCTGC+AGG | + | tig0018118:43489-43508 | Msa1364380:intron | 35.0% |
| ! | GAATTTTCATAGTACGATCC+TGG | - | tig0018118:43518-43537 | None:intergenic | 35.0% |
| TGTTTCCTTATATCAGTGAG+TGG | - | tig0018118:43615-43634 | None:intergenic | 35.0% | |
| TTCAAACAAGCCAATCCAAA+TGG | - | tig0018118:43661-43680 | None:intergenic | 35.0% | |
| AAGTGTTTATGCTAGTAGAC+AGG | - | tig0018118:43684-43703 | None:intergenic | 35.0% | |
| !! | CTTAAATGCGTAGCTGATTT+TGG | + | tig0018118:43900-43919 | Msa1364380:intron | 35.0% |
| !!! | GCTGATTTTGGTTTTCATAC+AGG | + | tig0018118:43912-43931 | Msa1364380:intron | 35.0% |
| !! | AAAGTTTTGCTGGTCTAAAG+AGG | + | tig0018118:43940-43959 | Msa1364380:CDS | 35.0% |
| TTATGGTGTAGTAGATTGTG+AGG | + | tig0018118:44052-44071 | Msa1364380:CDS | 35.0% | |
| ATAGGGCTATTATGTCTACT+AGG | - | tig0018118:44116-44135 | None:intergenic | 35.0% | |
| AGAACCTTCAACTGAACATT+GGG | - | tig0018118:44153-44172 | None:intergenic | 35.0% | |
| AAGAACCTTCAACTGAACAT+TGG | - | tig0018118:44154-44173 | None:intergenic | 35.0% | |
| TCTTTATCAAAGGGATTTGC+AGG | + | tig0018118:44170-44189 | Msa1364380:CDS | 35.0% | |
| TCTCAACTAGTTCCTATGTA+CGG | + | tig0018118:44198-44217 | Msa1364380:intron | 35.0% | |
| ACAACATAAAATACACCAGC+TGG | - | tig0018118:44426-44445 | None:intergenic | 35.0% | |
| ! | CAATTAAGTTGCTGAACACT+TGG | + | tig0018118:44564-44583 | Msa1364380:intron | 35.0% |
| TGATCCTTAAACATGGCAAA+AGG | + | tig0018118:44589-44608 | Msa1364380:intron | 35.0% | |
| ATCATCAGAAATGGATGTGA+AGG | - | tig0018118:44660-44679 | None:intergenic | 35.0% | |
| CCATTTCTGATGATATGTGT+CGG | + | tig0018118:44666-44685 | Msa1364380:intron | 35.0% | |
| AATATCGATGCTATAGCCAA+TGG | + | tig0018118:44711-44730 | Msa1364380:intron | 35.0% | |
| TTCTTGCTTCCAAATACCAA+TGG | - | tig0018118:44755-44774 | None:intergenic | 35.0% | |
| ! | AGGAGTATAAGAAGAACTGA+GGG | - | tig0018118:44845-44864 | None:intergenic | 35.0% |
| CTTCTTATACTCCTCCTTAT+AGG | + | tig0018118:44851-44870 | Msa1364380:CDS | 35.0% | |
| AATCGAGCTCATTAACACCA+CGG | - | tig0018118:38827-38846 | None:intergenic | 40.0% | |
| GAACAAGAATTGTTCCAACC+AGG | - | tig0018118:38850-38869 | None:intergenic | 40.0% | |
| TGATAATCCAAAGTTCGGTC+GGG | - | tig0018118:38888-38907 | None:intergenic | 40.0% | |
| CTGATAATCCAAAGTTCGGT+CGG | - | tig0018118:38889-38908 | None:intergenic | 40.0% | |
| GACCGAACTTTGGATTATCA+GGG | + | tig0018118:38888-38907 | Msa1364380:intron | 40.0% | |
| GACCCTGATAATCCAAAGTT+CGG | - | tig0018118:38893-38912 | None:intergenic | 40.0% | |
| AATTCTCCCGATCGAACTTT+AGG | + | tig0018118:38952-38971 | Msa1364380:intron | 40.0% | |
| ! | CGATCGAACTTTAGGTTATC+AGG | + | tig0018118:38960-38979 | Msa1364380:intron | 40.0% |
| !! | TCAGGACATGCATTTGTTGT+TGG | + | tig0018118:39139-39158 | Msa1364380:CDS | 40.0% |
| !! | GCATTTGTTGTTGGTGAAGA+AGG | + | tig0018118:39148-39167 | Msa1364380:CDS | 40.0% |
| GACACAATTGTCGAAATTGG+TGG | + | tig0018118:39222-39241 | Msa1364380:CDS | 40.0% | |
| AACATACCCTGTACAAACTC+TGG | - | tig0018118:39251-39270 | None:intergenic | 40.0% | |
| ATGTATATTGCCGAGATTCG+CGG | + | tig0018118:39297-39316 | Msa1364380:intron | 40.0% | |
| ! | CGACAAAAAGTGTAATGTCG+TGG | + | tig0018118:39370-39389 | Msa1364380:intron | 40.0% |
| TAATGTCGTGGTCTAGATCA+TGG | + | tig0018118:39382-39401 | Msa1364380:intron | 40.0% | |
| GGTTATTGGGTAATCTAGGT+AGG | + | tig0018118:39463-39482 | Msa1364380:intron | 40.0% | |
| ATTGGGTAATCTAGGTAGGA+AGG | + | tig0018118:39467-39486 | Msa1364380:intron | 40.0% | |
| TGTTGTCATCTTGTGAGTCA+CGG | + | tig0018118:39565-39584 | Msa1364380:intron | 40.0% | |
| AGATCATATCATGGGAACTG+GGG | - | tig0018118:39663-39682 | None:intergenic | 40.0% | |
| ! | CACGGATTGATCACATATGA+TGG | - | tig0018118:39870-39889 | None:intergenic | 40.0% |
| ! | TTTTAACGAGGCTTCAGATG+TGG | + | tig0018118:39927-39946 | Msa1364380:intron | 40.0% |
| TTTAACGAGGCTTCAGATGT+GGG | + | tig0018118:39928-39947 | Msa1364380:intron | 40.0% | |
| ! | GAGTTTTCAGCAAGTGACAT+TGG | - | tig0018118:40068-40087 | None:intergenic | 40.0% |
| ! | GAATTTTTCTGCCCCTAAAC+CGG | - | tig0018118:40273-40292 | None:intergenic | 40.0% |
| GCTTTCTTCGTAATCATGGT+TGG | + | tig0018118:40521-40540 | Msa1364380:intron | 40.0% | |
| GACAACAATAAGGTGGAAGT+AGG | - | tig0018118:40612-40631 | None:intergenic | 40.0% | |
| AACTGTCAATGCTCATGTCA+CGG | + | tig0018118:40784-40803 | Msa1364380:CDS | 40.0% | |
| ATGCAATGCATGACTGAATG+TGG | - | tig0018118:40842-40861 | None:intergenic | 40.0% | |
| TTCCTGTGTTTCTCTTTCCT+AGG | + | tig0018118:41112-41131 | Msa1364380:intron | 40.0% | |
| ! | AAACTCTGAAAAGGTTGCCT+AGG | - | tig0018118:41132-41151 | None:intergenic | 40.0% |
| ! | GAACCGAGAAAACTCTGAAA+AGG | - | tig0018118:41141-41160 | None:intergenic | 40.0% |
| TGAAAACAAAGGACAACCAG+TGG | - | tig0018118:41285-41304 | None:intergenic | 40.0% | |
| GTAACCCTAACCCTATATCA+GGG | - | tig0018118:41592-41611 | None:intergenic | 40.0% | |
| AGTAACCCTAACCCTATATC+AGG | - | tig0018118:41593-41612 | None:intergenic | 40.0% | |
| ! | GTCCCATTTTATATAACCCG+TGG | + | tig0018118:41652-41671 | Msa1364380:intron | 40.0% |
| ! | GCCCACGGGTTATATAAAAT+GGG | - | tig0018118:41657-41676 | None:intergenic | 40.0% |
| ACCCTACTAGGTTGTATAGA+TGG | - | tig0018118:41684-41703 | None:intergenic | 40.0% | |
| ACAACATATCTGAGGATACG+TGG | + | tig0018118:41771-41790 | Msa1364380:CDS | 40.0% | |
| AGCAGAAATGACAAGAAGAG+AGG | - | tig0018118:41922-41941 | None:intergenic | 40.0% | |
| ATTACTTGAGGAGTCTGCAT+TGG | + | tig0018118:41992-42011 | Msa1364380:intron | 40.0% | |
| !! | TAAAAGCATCAAGACTACCC+CGG | - | tig0018118:42026-42045 | None:intergenic | 40.0% |
| ! | TTTTTGTGCTTGTAGGTGCT+TGG | + | tig0018118:42072-42091 | Msa1364380:intron | 40.0% |
| GGTTTCTTTATGGCCAAACA+AGG | + | tig0018118:42137-42156 | Msa1364380:intron | 40.0% | |
| ! | AGAACTCAAGATGCCTTGTT+TGG | - | tig0018118:42153-42172 | None:intergenic | 40.0% |
| !! | TCCTCTAAGATGCTAAATGG+TGG | + | tig0018118:42271-42290 | Msa1364380:intron | 40.0% |
| TCCACCATTTAGCATCTTAG+AGG | - | tig0018118:42275-42294 | None:intergenic | 40.0% | |
| AAATAGGTCGGTCAGTGTAA+CGG | + | tig0018118:42564-42583 | Msa1364380:intron | 40.0% | |
| ! | TAGTGGACCTTTCATTCAAC+TGG | + | tig0018118:42883-42902 | Msa1364380:intron | 40.0% |
| GTAGTGACCAGTTGAATGAA+AGG | - | tig0018118:42893-42912 | None:intergenic | 40.0% | |
| GAACAAGCATTTAGGAGAGT+TGG | + | tig0018118:43145-43164 | Msa1364380:intron | 40.0% | |
| ACCAGGAATTGACAGAGATT+CGG | - | tig0018118:43567-43586 | None:intergenic | 40.0% | |
| TGCAACCACTCACTGATATA+AGG | + | tig0018118:43607-43626 | Msa1364380:intron | 40.0% | |
| CTACGCATTTAAGCTCAGTT+GGG | - | tig0018118:43893-43912 | None:intergenic | 40.0% | |
| ! | ACAGGACTGAAAAGTTTTGC+TGG | + | tig0018118:43930-43949 | Msa1364380:intron | 40.0% |
| TCTAAAGAGGAAGTTAGCTG+AGG | + | tig0018118:43953-43972 | Msa1364380:CDS | 40.0% | |
| GGAAGCAAGAAAAGACGATA+TGG | + | tig0018118:43974-43993 | Msa1364380:CDS | 40.0% | |
| ATTGTGAGGACAATCCACAA+GGG | + | tig0018118:44066-44085 | Msa1364380:CDS | 40.0% | |
| TTCAACTGAACATTGGGACT+TGG | - | tig0018118:44147-44166 | None:intergenic | 40.0% | |
| AAGTCCCAATGTTCAGTTGA+AGG | + | tig0018118:44146-44165 | Msa1364380:CDS | 40.0% | |
| ACTAGTTCCTATGTACGGTT+TGG | + | tig0018118:44203-44222 | Msa1364380:intron | 40.0% | |
| !! | TACAAATTGCTTTTGCCAGC+TGG | + | tig0018118:44408-44427 | Msa1364380:intron | 40.0% |
| CTTGGTCTGATCCTTAAACA+TGG | + | tig0018118:44582-44601 | Msa1364380:intron | 40.0% | |
| ! | TGGACCTTTTGCCATGTTTA+AGG | - | tig0018118:44596-44615 | None:intergenic | 40.0% |
| ATCTTTGCAGCACGAAAGTT+TGG | + | tig0018118:44634-44653 | Msa1364380:intron | 40.0% | |
| CCGACACATATCATCAGAAA+TGG | - | tig0018118:44669-44688 | None:intergenic | 40.0% | |
| CAAATACCAATGGCAAATCG+TGG | - | tig0018118:44745-44764 | None:intergenic | 40.0% | |
| CACGATTTGCCATTGGTATT+TGG | + | tig0018118:44743-44762 | Msa1364380:CDS | 40.0% | |
| AGCACCTACTCATATTGTTG+AGG | + | tig0018118:44774-44793 | Msa1364380:CDS | 40.0% | |
| TGCTCCTCAACAATATGAGT+AGG | - | tig0018118:44781-44800 | None:intergenic | 40.0% | |
| AGAAGAACTGAGGGTTTCAA+CGG | - | tig0018118:44836-44855 | None:intergenic | 40.0% | |
| ! | GAGGAGTATAAGAAGAACTG+AGG | - | tig0018118:44846-44865 | None:intergenic | 40.0% |
| TGCTTGCTCCAACAACTTTG+AGG | + | tig0018118:38432-38451 | Msa1364380:five_prime_UTR | 45.0% | |
| GCTTGCTCCAACAACTTTGA+GGG | + | tig0018118:38433-38452 | Msa1364380:five_prime_UTR | 45.0% | |
| AAGCTTGCCCTCAAAGTTGT+TGG | - | tig0018118:38443-38462 | None:intergenic | 45.0% | |
| ATCGAAGAGAGATGCATCCA+TGG | - | tig0018118:38468-38487 | None:intergenic | 45.0% | |
| GTGTTAATGAGCTCGATTCC+TGG | + | tig0018118:38829-38848 | Msa1364380:intron | 45.0% | |
| TAATGAGCTCGATTCCTGGT+TGG | + | tig0018118:38833-38852 | Msa1364380:intron | 45.0% | |
| CGACCGAACTTTGGATTATC+AGG | + | tig0018118:38887-38906 | Msa1364380:intron | 45.0% | |
| ! | CAGTGATTTTCAGAAGGCGA+AGG | + | tig0018118:39183-39202 | Msa1364380:CDS | 45.0% |
| TTCAGAAGGCGAAGGTTTCA+AGG | + | tig0018118:39191-39210 | Msa1364380:CDS | 45.0% | |
| TCAGAAGGCGAAGGTTTCAA+GGG | + | tig0018118:39192-39211 | Msa1364380:CDS | 45.0% | |
| TGGAGTCCAGAGTTTGTACA+GGG | + | tig0018118:39242-39261 | Msa1364380:CDS | 45.0% | |
| CTGCATTTAACCGCGAATCT+CGG | - | tig0018118:39310-39329 | None:intergenic | 45.0% | |
| CAGCTGATACACCACAATTG+TGG | + | tig0018118:39327-39346 | Msa1364380:intron | 45.0% | |
| GAGTCACGGTCTCATTGTTT+CGG | + | tig0018118:39579-39598 | Msa1364380:intron | 45.0% | |
| TTAACGAGGCTTCAGATGTG+GGG | + | tig0018118:39929-39948 | Msa1364380:intron | 45.0% | |
| CTGATTCAACCTGTCATGAC+CGG | + | tig0018118:40251-40270 | Msa1364380:intron | 45.0% | |
| ! | AACCTGTCATGACCGGTTTA+GGG | + | tig0018118:40258-40277 | Msa1364380:intron | 45.0% |
| ATCAGGTCCAGTCATGCATT+TGG | - | tig0018118:40295-40314 | None:intergenic | 45.0% | |
| ATGCATGACTGGACCTGATA+TGG | + | tig0018118:40296-40315 | Msa1364380:intron | 45.0% | |
| TGCATGACTGGACCTGATAT+GGG | + | tig0018118:40297-40316 | Msa1364380:intron | 45.0% | |
| TGATTACGAAGAAAGCTGCC+AGG | - | tig0018118:40517-40536 | None:intergenic | 45.0% | |
| GGCAGCTTTCTTCGTAATCA+TGG | + | tig0018118:40517-40536 | Msa1364380:intron | 45.0% | |
| ! | ACAGGAAGCACATAAGTGAG+AGG | - | tig0018118:41099-41118 | None:intergenic | 45.0% |
| TGCCTAGGAAAGAGAAACAC+AGG | - | tig0018118:41117-41136 | None:intergenic | 45.0% | |
| ! | TAAGCAAGGCACTAACTGCT+TGG | + | tig0018118:41326-41345 | Msa1364380:CDS | 45.0% |
| ACCTCAACAAAGTCACACCA+TGG | - | tig0018118:41388-41407 | None:intergenic | 45.0% | |
| AAAAAATCGCACACGAGCTC+AGG | - | tig0018118:41566-41585 | None:intergenic | 45.0% | |
| ! | GGCCCACGGGTTATATAAAA+TGG | - | tig0018118:41658-41677 | None:intergenic | 45.0% |
| !! | TGTATAGATGGATTGGCCCA+CGG | - | tig0018118:41672-41691 | None:intergenic | 45.0% |
| CTAGATGCCTATGATCCTGA+AGG | + | tig0018118:41833-41852 | Msa1364380:CDS | 45.0% | |
| GTCGAGCATATGTACAGGTT+AGG | + | tig0018118:42116-42135 | Msa1364380:intron | 45.0% | |
| CGGAATTCAGGAAGGAAACT+AGG | - | tig0018118:42924-42943 | None:intergenic | 45.0% | |
| AGCTCCCATATCACTCACAT+AGG | + | tig0018118:43022-43041 | Msa1364380:intron | 45.0% | |
| TCCAACATCCACTGTAACTG+TGG | + | tig0018118:43536-43555 | Msa1364380:CDS | 45.0% | |
| ACCACAGTTACAGTGGATGT+TGG | - | tig0018118:43540-43559 | None:intergenic | 45.0% | |
| TCCGAATCTCTGTCAATTCC+TGG | + | tig0018118:43563-43582 | Msa1364380:CDS | 45.0% | |
| AGAACTTCGATCAACTGACC+AGG | - | tig0018118:43584-43603 | None:intergenic | 45.0% | |
| GCTACGCATTTAAGCTCAGT+TGG | - | tig0018118:43894-43913 | None:intergenic | 45.0% | |
| GATTGTGAGGACAATCCACA+AGG | + | tig0018118:44065-44084 | Msa1364380:CDS | 45.0% | |
| GAATGCAGCAGAGGAATGTA+TGG | + | tig0018118:44088-44107 | Msa1364380:CDS | 45.0% | |
| GGGACTTGGATGAACACATA+GGG | - | tig0018118:44133-44152 | None:intergenic | 45.0% | |
| TGGGACTTGGATGAACACAT+AGG | - | tig0018118:44134-44153 | None:intergenic | 45.0% | |
| CTCTCTACCAAACCGTACAT+AGG | - | tig0018118:44213-44232 | None:intergenic | 45.0% | |
| !! | ATGTACGGTTTGGTAGAGAG+AGG | + | tig0018118:44213-44232 | Msa1364380:intron | 45.0% |
| ! | AATCGTGGAACTTGCTCCAT+TGG | - | tig0018118:44730-44749 | None:intergenic | 45.0% |
| CAAGTTCCACGATTTGCCAT+TGG | + | tig0018118:44736-44755 | Msa1364380:CDS | 45.0% | |
| !! | TTAAAAAATTATTAAAAGAT+AGG | - | tig0018118:43231-43250 | None:intergenic | 5.0% |
| TTGTTGGAGCAAGCAGAGAG+AGG | - | tig0018118:38427-38446 | None:intergenic | 50.0% | |
| TTTGAGGGCAAGCTTCTCCA+TGG | + | tig0018118:38448-38467 | Msa1364380:exon | 50.0% | |
| AACTAAGTGATTGGGCTCCG+TGG | + | tig0018118:38807-38826 | Msa1364380:intron | 50.0% | |
| ACTCGTGTTCTCCCGAACAA+TGG | - | tig0018118:38930-38949 | None:intergenic | 50.0% | |
| TTATCAGGGTTCCTTTCCCC+TGG | + | tig0018118:38975-38994 | Msa1364380:intron | 50.0% | |
| TGTTAACCCTCCACGTTCCA+GGG | - | tig0018118:38995-39014 | None:intergenic | 50.0% | |
| GTGGAGTCCAGAGTTTGTAC+AGG | + | tig0018118:39241-39260 | Msa1364380:CDS | 50.0% | |
| CCACAGCAAGACCACAATTG+TGG | - | tig0018118:39341-39360 | None:intergenic | 50.0% | |
| ! | CCACAATTGTGGTCTTGCTG+TGG | + | tig0018118:39338-39357 | Msa1364380:intron | 50.0% |
| ! | CAACCTGTCATGACCGGTTT+AGG | + | tig0018118:40257-40276 | Msa1364380:intron | 50.0% |
| ! | ACCTGTCATGACCGGTTTAG+GGG | + | tig0018118:40259-40278 | Msa1364380:intron | 50.0% |
| CTTGGAACTGGACCCATATC+AGG | - | tig0018118:40312-40331 | None:intergenic | 50.0% | |
| TCAATGCTCATGTCACGGCT+GGG | + | tig0018118:40789-40808 | Msa1364380:CDS | 50.0% | |
| CTGTCTACAAGCACACAAGC+AGG | + | tig0018118:40885-40904 | Msa1364380:intron | 50.0% | |
| GCCATGGTGTGACTTTGTTG+AGG | + | tig0018118:41384-41403 | Msa1364380:CDS | 50.0% | |
| !! | GTATAGATGGATTGGCCCAC+GGG | - | tig0018118:41671-41690 | None:intergenic | 50.0% |
| ATCTGAGGATACGTGGCAAC+AGG | + | tig0018118:41778-41797 | Msa1364380:CDS | 50.0% | |
| CAAACAGACATGCGGATGCA+GGG | - | tig0018118:41950-41969 | None:intergenic | 50.0% | |
| GTCTGCATTGGAAGCAACAC+CGG | + | tig0018118:42004-42023 | Msa1364380:intron | 50.0% | |
| TCTGCATTGGAAGCAACACC+GGG | + | tig0018118:42005-42024 | Msa1364380:intron | 50.0% | |
| ACGATCGACGGAATTCAGGA+AGG | - | tig0018118:42932-42951 | None:intergenic | 50.0% | |
| TCACACGATCGACGGAATTC+AGG | - | tig0018118:42936-42955 | None:intergenic | 50.0% | |
| TATGTGGCTTCCATTCCAGC+TGG | + | tig0018118:43363-43382 | Msa1364380:intron | 50.0% | |
| ATGTGGCTTCCATTCCAGCT+GGG | + | tig0018118:43364-43383 | Msa1364380:intron | 50.0% | |
| TTATTGTCCTGCAGGCTACC+AGG | + | tig0018118:43497-43516 | Msa1364380:intron | 50.0% | |
| CGGAATCACCACAGTTACAG+TGG | - | tig0018118:43547-43566 | None:intergenic | 50.0% | |
| CTGAGGGTTTCAACGGAGAA+GGG | - | tig0018118:44829-44848 | None:intergenic | 50.0% | |
| ACTGAGGGTTTCAACGGAGA+AGG | - | tig0018118:44830-44849 | None:intergenic | 50.0% | |
| TTGGAGCAAGCAGAGAGAGG+AGG | - | tig0018118:38424-38443 | None:intergenic | 55.0% | |
| CCAAAGTTCGGTCGGGAGAT+AGG | - | tig0018118:38881-38900 | None:intergenic | 55.0% | |
| CCTATCTCCCGACCGAACTT+TGG | + | tig0018118:38878-38897 | Msa1364380:intron | 55.0% | |
| GTTAACCCTCCACGTTCCAG+GGG | - | tig0018118:38994-39013 | None:intergenic | 55.0% | |
| GTGTTAACCCTCCACGTTCC+AGG | - | tig0018118:38996-39015 | None:intergenic | 55.0% | |
| GAAGGCGAAGGTTTCAAGGG+AGG | + | tig0018118:39195-39214 | Msa1364380:CDS | 55.0% | |
| GGCATGCTTGAGCTGAATCC+TGG | + | tig0018118:40496-40515 | Msa1364380:intron | 55.0% | |
| GTCAATGCTCATGTCACGGC+TGG | + | tig0018118:40788-40807 | Msa1364380:CDS | 55.0% | |
| CATGTCACGGCTGGGTTTGA+TGG | + | tig0018118:40797-40816 | Msa1364380:CDS | 55.0% | |
| GGTTTCCACTGCTTCAGCCA+TGG | + | tig0018118:41368-41387 | Msa1364380:CDS | 55.0% | |
| TCACACCATGGCTGAAGCAG+TGG | - | tig0018118:41376-41395 | None:intergenic | 55.0% | |
| CCAAACAGACATGCGGATGC+AGG | - | tig0018118:41951-41970 | None:intergenic | 55.0% | |
| CCTGCATCCGCATGTCTGTT+TGG | + | tig0018118:41948-41967 | Msa1364380:intron | 55.0% | |
| CTGCATTGGAAGCAACACCG+GGG | + | tig0018118:42006-42025 | Msa1364380:intron | 55.0% | |
| TAGGTCGGTCAGTGTAACGG+TGG | + | tig0018118:42567-42586 | Msa1364380:intron | 55.0% | |
| TGTGGCTTCCATTCCAGCTG+GGG | + | tig0018118:43365-43384 | Msa1364380:intron | 55.0% | |
| AAAACTCGCAAGACCCCAGC+TGG | - | tig0018118:43381-43400 | None:intergenic | 55.0% | |
| TCCACAAGGGAATGCAGCAG+AGG | + | tig0018118:44079-44098 | Msa1364380:CDS | 55.0% | |
| TCCTCTGCTGCATTCCCTTG+TGG | - | tig0018118:44083-44102 | None:intergenic | 55.0% | |
| !! | CGGTTTGGTAGAGAGAGGAG+AGG | + | tig0018118:44218-44237 | Msa1364380:intron | 55.0% |
| GGTTCCTTTCCCCTGGAACG+TGG | + | tig0018118:38982-39001 | Msa1364380:intron | 60.0% | |
| TCCTTTCCCCTGGAACGTGG+AGG | + | tig0018118:38985-39004 | Msa1364380:intron | 60.0% | |
| CCTTTCCCCTGGAACGTGGA+GGG | + | tig0018118:38986-39005 | Msa1364380:intron | 60.0% | |
| GCCCCTAAACCGGTCATGAC+AGG | - | tig0018118:40263-40282 | None:intergenic | 60.0% | |
| AGACATGCGGATGCAGGGTG+AGG | - | tig0018118:41945-41964 | None:intergenic | 60.0% | |
| TCGCAAGACCCCAGCTGGAA+TGG | - | tig0018118:43376-43395 | None:intergenic | 60.0% | |
| GTACGATCCTGGTAGCCTGC+AGG | - | tig0018118:43507-43526 | None:intergenic | 60.0% | |
| CCCTCCACGTTCCAGGGGAA+AGG | - | tig0018118:38989-39008 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018118 | gene | 38334 | 44876 | 38334 | ID=Msa1364380;Name=Msa1364380 |
| tig0018118 | mRNA | 38334 | 44876 | 38334 | ID=Msa1364380-mRNA-1;Parent=Msa1364380;Name=Msa1364380-mRNA-1;_AED=0.23;_eAED=0.24;_QI=133|0.88|0.8|1|1|1|10|0|346 |
| tig0018118 | exon | 38334 | 38515 | 38334 | ID=Msa1364380-mRNA-1:exon:13969;Parent=Msa1364380-mRNA-1 |
| tig0018118 | exon | 39131 | 39263 | 39131 | ID=Msa1364380-mRNA-1:exon:13970;Parent=Msa1364380-mRNA-1 |
| tig0018118 | exon | 40767 | 40818 | 40767 | ID=Msa1364380-mRNA-1:exon:13971;Parent=Msa1364380-mRNA-1 |
| tig0018118 | exon | 41134 | 41209 | 41134 | ID=Msa1364380-mRNA-1:exon:13972;Parent=Msa1364380-mRNA-1 |
| tig0018118 | exon | 41323 | 41405 | 41323 | ID=Msa1364380-mRNA-1:exon:13973;Parent=Msa1364380-mRNA-1 |
| tig0018118 | exon | 41758 | 41854 | 41758 | ID=Msa1364380-mRNA-1:exon:13974;Parent=Msa1364380-mRNA-1 |
| tig0018118 | exon | 42087 | 42132 | 42087 | ID=Msa1364380-mRNA-1:exon:13975;Parent=Msa1364380-mRNA-1 |
| tig0018118 | exon | 43511 | 43584 | 43511 | ID=Msa1364380-mRNA-1:exon:13976;Parent=Msa1364380-mRNA-1 |
| tig0018118 | exon | 43934 | 44214 | 43934 | ID=Msa1364380-mRNA-1:exon:13977;Parent=Msa1364380-mRNA-1 |
| tig0018118 | exon | 44727 | 44876 | 44727 | ID=Msa1364380-mRNA-1:exon:13978;Parent=Msa1364380-mRNA-1 |
| tig0018118 | five_prime_UTR | 38334 | 38466 | 38334 | ID=Msa1364380-mRNA-1:five_prime_utr;Parent=Msa1364380-mRNA-1 |
| tig0018118 | CDS | 38467 | 38515 | 38467 | ID=Msa1364380-mRNA-1:cds;Parent=Msa1364380-mRNA-1 |
| tig0018118 | CDS | 39131 | 39263 | 39131 | ID=Msa1364380-mRNA-1:cds;Parent=Msa1364380-mRNA-1 |
| tig0018118 | CDS | 40767 | 40818 | 40767 | ID=Msa1364380-mRNA-1:cds;Parent=Msa1364380-mRNA-1 |
| tig0018118 | CDS | 41134 | 41209 | 41134 | ID=Msa1364380-mRNA-1:cds;Parent=Msa1364380-mRNA-1 |
| tig0018118 | CDS | 41323 | 41405 | 41323 | ID=Msa1364380-mRNA-1:cds;Parent=Msa1364380-mRNA-1 |
| tig0018118 | CDS | 41758 | 41854 | 41758 | ID=Msa1364380-mRNA-1:cds;Parent=Msa1364380-mRNA-1 |
| tig0018118 | CDS | 42087 | 42132 | 42087 | ID=Msa1364380-mRNA-1:cds;Parent=Msa1364380-mRNA-1 |
| tig0018118 | CDS | 43511 | 43584 | 43511 | ID=Msa1364380-mRNA-1:cds;Parent=Msa1364380-mRNA-1 |
| tig0018118 | CDS | 43934 | 44214 | 43934 | ID=Msa1364380-mRNA-1:cds;Parent=Msa1364380-mRNA-1 |
| tig0018118 | CDS | 44727 | 44876 | 44727 | ID=Msa1364380-mRNA-1:cds;Parent=Msa1364380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
