AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171300 MtrunA17_Chr1g0189381 98.747 479 5 1 1 479 1 478 0.0 969
Msa0171300 MtrunA17_Chr7g0249451 67.091 471 149 3 9 475 7 475 0.0 657
Msa0171300 MtrunA17_Chr7g0221681 54.920 437 188 3 26 455 24 458 1.24e-175 501
Msa0171300 MtrunA17_Chr7g0265331 39.009 464 257 8 31 475 37 493 3.86e-107 327
Msa0171300 MtrunA17_Chr4g0027681 39.130 460 255 9 36 477 39 491 3.91e-105 322
Msa0171300 MtrunA17_Chr2g0320621 39.069 494 277 9 2 477 1 488 1.08e-103 318
Msa0171300 MtrunA17_Chr1g0179751 38.967 426 235 10 32 441 64 480 2.42e-98 305
Msa0171300 MtrunA17_Chr5g0401601 30.290 449 246 20 31 455 61 466 1.27e-39 151
Msa0171300 MtrunA17_Chr4g0053721 30.729 384 215 15 68 431 79 431 1.58e-34 137
Msa0171300 MtrunA17_Chr3g0130741 27.098 417 249 17 45 440 62 444 5.21e-32 127
Msa0171300 MtrunA17_Chr4g0010951 28.205 429 233 17 50 430 44 445 4.91e-31 124
Msa0171300 MtrunA17_Chr6g0475351 61.446 83 32 0 112 194 4 86 8.01e-31 114
Msa0171300 MtrunA17_Chr5g0435871 28.125 384 229 18 63 431 84 435 5.90e-30 121
Msa0171300 MtrunA17_Chr8g0352661 27.676 383 228 15 68 431 85 437 7.49e-30 121
Msa0171300 MtrunA17_Chr1g0159791 28.392 398 242 18 49 430 39 409 1.05e-29 120
Msa0171300 MtrunA17_Chr3g0130931 29.134 381 219 17 68 431 103 449 3.54e-29 119
Msa0171300 MtrunA17_Chr4g0001991 29.306 389 225 16 60 431 163 518 5.46e-29 119
Msa0171300 MtrunA17_Chr8g0371351 26.150 413 257 16 39 430 64 449 9.42e-29 119
Msa0171300 MtrunA17_Chr5g0435971 27.154 383 234 16 63 431 81 432 2.82e-28 116
Msa0171300 MtrunA17_Chr8g0386441 28.049 410 238 20 39 431 61 430 1.19e-27 114
Msa0171300 MtrunA17_Chr3g0099891 29.211 380 213 15 67 430 115 454 1.30e-27 115
Msa0171300 MtrunA17_Chr5g0395871 28.278 389 219 17 65 432 77 426 4.10e-27 113
Msa0171300 MtrunA17_Chr2g0310801 29.412 374 226 15 68 431 89 434 6.97e-27 112
Msa0171300 MtrunA17_Chr3g0124421 26.683 416 261 17 39 430 55 450 7.28e-27 113
Msa0171300 MtrunA17_Chr3g0087851 28.235 425 249 19 28 431 48 437 8.39e-27 112
Msa0171300 MtrunA17_Chr8g0384731 26.847 406 247 19 52 438 58 432 9.01e-27 112
Msa0171300 MtrunA17_Chr2g0307991 29.178 377 221 18 70 431 60 405 1.07e-26 111
Msa0171300 MtrunA17_Chr2g0291201 29.146 398 218 17 62 430 89 451 1.22e-26 112
Msa0171300 MtrunA17_Chr3g0095891 29.925 401 219 20 61 430 89 458 1.43e-26 112
Msa0171300 MtrunA17_Chr6g0484901 26.359 368 231 13 70 430 157 491 1.43e-26 112
Msa0171300 MtrunA17_Chr5g0406001 27.749 382 224 17 69 430 112 461 1.78e-26 112
Msa0171300 MtrunA17_Chr8g0352671 28.084 381 226 17 68 431 88 437 2.11e-26 111
Msa0171300 MtrunA17_Chr5g0442921 28.030 396 236 16 61 431 183 554 5.53e-26 111
Msa0171300 MtrunA17_Chr5g0395931 29.630 378 224 17 68 431 87 436 6.01e-26 109
Msa0171300 MtrunA17_Chr8g0371371 27.225 382 232 15 69 434 112 463 1.38e-25 109
Msa0171300 MtrunA17_Chr5g0395911 28.307 378 228 17 68 431 66 414 6.49e-25 106
Msa0171300 MtrunA17_Chr7g0275731 25.849 383 240 13 61 430 133 484 6.65e-25 107
Msa0171300 MtrunA17_Chr5g0419291 26.933 375 231 15 68 430 85 428 7.37e-25 106
Msa0171300 MtrunA17_Chr6g0484731 28.049 410 249 18 52 440 176 560 2.14e-24 106
Msa0171300 MtrunA17_Chr2g0308001 28.721 383 222 19 70 432 59 410 2.20e-24 105
Msa0171300 MtrunA17_Chr5g0425141 25.464 377 246 14 69 434 101 453 2.25e-24 106
Msa0171300 MtrunA17_Chr2g0333991 25.935 401 252 16 42 425 58 430 3.91e-24 104
Msa0171300 MtrunA17_Chr1g0210201 25.526 380 238 14 61 430 123 467 2.92e-23 102
Msa0171300 MtrunA17_Chr1g0212321 26.702 382 235 14 61 430 138 486 1.12e-22 100
Msa0171300 MtrunA17_Chr8g0390761 24.427 393 246 13 41 420 91 445 2.32e-22 99.4
Msa0171300 MtrunA17_Chr2g0310831 26.202 416 257 16 31 431 61 441 1.07e-21 97.4
Msa0171300 MtrunA17_Chr5g0415951 27.632 380 228 14 70 433 89 437 1.52e-21 97.1
Msa0171300 MtrunA17_Chr2g0310821 27.778 378 222 18 68 433 107 445 1.73e-21 96.7
Msa0171300 MtrunA17_Chr1g0165201 25.521 384 238 15 61 430 120 469 2.96e-21 96.3
Msa0171300 MtrunA17_Chr2g0311451 24.818 411 256 16 42 431 58 436 4.00e-21 95.5
Msa0171300 MtrunA17_Chr7g0267171 26.303 403 237 18 68 433 89 468 5.72e-21 95.5
Msa0171300 MtrunA17_Chr2g0312941 25.816 337 205 13 63 372 81 399 1.33e-20 94.4
Msa0171300 MtrunA17_Chr4g0019931 35.246 122 78 1 74 194 1 122 1.99e-20 87.0
Msa0171300 MtrunA17_Chr3g0099901 27.778 378 227 15 67 430 140 485 1.68e-19 91.3
Msa0171300 MtrunA17_Chr1g0164401 26.471 374 226 19 70 431 93 429 2.51e-19 90.1
Msa0171300 MtrunA17_Chr3g0110191 25.515 388 228 17 74 435 91 443 3.04e-19 90.1
Msa0171300 MtrunA17_Chr6g0486981 23.885 381 239 14 70 431 89 437 4.23e-19 89.7
Msa0171300 MtrunA17_Chr2g0309561 23.256 430 270 16 46 430 94 508 6.17e-19 89.4
Msa0171300 MtrunA17_Chr6g0457401 25.236 424 263 19 28 431 48 437 1.31e-18 88.2
Msa0171300 MtrunA17_Chr4g0023351 30.677 251 137 12 70 304 59 288 3.24e-18 85.1
Msa0171300 MtrunA17_Chr4g0061641 26.720 378 225 17 70 431 56 397 4.47e-17 83.2
Msa0171300 MtrunA17_Chr6g0487471 24.219 384 238 14 68 431 85 435 4.57e-17 83.2
Msa0171300 MtrunA17_Chr5g0395891 29.653 317 186 16 129 431 20 313 6.90e-17 81.6
Msa0171300 MtrunA17_Chr8g0353261 25.066 379 234 17 66 431 93 434 8.91e-17 82.4
Msa0171300 MtrunA17_Chr4g0056211 26.291 426 238 20 63 432 67 472 9.32e-17 82.8
Msa0171300 MtrunA17_Chr3g0112051 25.393 382 210 16 74 430 78 409 1.46e-15 78.6
Msa0171300 MtrunA17_Chr7g0239001 25.128 390 233 17 73 430 63 425 7.41e-15 76.6
Msa0171300 MtrunA17_Chr5g0434411 24.611 386 238 18 74 435 86 442 7.87e-15 76.6
Msa0171300 MtrunA17_Chr2g0307461 24.869 382 224 14 70 420 71 420 2.60e-14 74.7
Msa0171300 MtrunA17_Chr3g0078321 22.667 375 242 15 77 431 67 413 2.84e-14 74.7
Msa0171300 MtrunA17_Chr2g0287841 23.750 400 232 17 63 417 57 428 4.40e-14 74.3
Msa0171300 MtrunA17_Chr2g0287861 23.980 392 229 16 67 417 41 404 9.14e-14 73.2
Msa0171300 MtrunA17_Chr5g0430861 47.945 73 36 2 198 269 34 105 3.05e-13 65.9
Msa0171300 MtrunA17_Chr3g0133071 22.115 416 276 15 24 430 61 437 5.76e-11 64.3
Msa0171300 MtrunA17_Chr8g0352691 27.915 283 169 13 160 431 2 260 7.21e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171300 AT1G05840.1 54.967 453 200 2 5 455 13 463 0.0 524
Msa0171300 AT5G36260.1 51.852 459 210 7 24 477 28 480 1.02e-169 487
Msa0171300 AT3G02740.1 49.794 486 222 8 2 471 1 480 2.43e-162 468
Msa0171300 AT1G65240.1 50.769 455 210 8 24 473 24 469 2.93e-159 460
Msa0171300 AT3G02740.2 53.350 403 182 5 69 471 9 405 2.55e-149 432
Msa0171300 AT5G22850.1 39.913 461 254 8 31 474 38 492 2.18e-106 325
Msa0171300 AT2G36670.2 37.975 474 266 7 20 474 35 499 6.87e-103 317
Msa0171300 AT2G36670.1 37.578 479 266 8 20 474 35 504 1.66e-100 311
Msa0171300 AT2G36670.4 40.000 410 233 5 69 474 33 433 1.90e-98 303
Msa0171300 AT2G36670.3 40.000 410 233 5 69 474 33 433 1.90e-98 303
Msa0171300 AT1G08210.1 38.000 450 257 9 7 442 11 452 8.19e-95 296
Msa0171300 AT1G08210.4 38.000 450 257 9 7 442 45 486 1.96e-94 296
Msa0171300 AT1G08210.3 38.000 450 257 9 7 442 59 500 2.90e-94 296
Msa0171300 AT1G08210.2 36.229 472 262 10 7 442 11 479 6.53e-90 284
Msa0171300 AT3G42550.1 25.558 493 279 15 7 478 5 430 1.99e-41 153
Msa0171300 AT5G43100.2 28.833 437 245 19 68 473 74 475 1.73e-37 143
Msa0171300 AT5G43100.1 30.000 380 215 16 68 431 74 418 2.34e-36 142
Msa0171300 AT4G33490.2 27.766 461 266 22 2 439 4 420 2.43e-36 139
Msa0171300 AT2G17760.1 28.954 411 246 16 39 430 66 449 2.24e-35 138
Msa0171300 AT3G50050.1 30.504 377 219 15 68 431 91 437 1.53e-33 134
Msa0171300 AT3G12700.1 27.352 457 270 18 7 431 35 461 2.15e-32 129
Msa0171300 AT3G25700.1 29.293 396 235 16 61 431 75 450 7.00e-31 124
Msa0171300 AT1G44130.1 26.700 397 245 16 52 431 33 400 1.10e-29 120
Msa0171300 AT1G25510.1 25.858 379 238 12 61 430 139 483 1.02e-28 119
Msa0171300 AT4G33490.1 29.032 341 201 15 2 336 1 306 1.02e-28 117
Msa0171300 AT5G10080.1 26.087 391 249 15 69 442 99 466 8.12e-27 114
Msa0171300 AT2G23945.1 27.208 419 252 17 39 430 56 448 2.11e-26 112
Msa0171300 AT1G49050.1 27.273 407 243 21 52 430 187 568 3.14e-26 112
Msa0171300 AT3G59080.1 25.435 460 284 18 2 431 103 533 5.13e-26 111
Msa0171300 AT1G01300.1 27.913 412 222 18 46 431 123 485 7.82e-26 110
Msa0171300 AT3G51350.1 26.506 415 257 18 39 430 63 452 9.45e-26 110
Msa0171300 AT3G18490.1 26.190 378 241 13 61 430 153 500 1.36e-25 110
Msa0171300 AT3G54400.1 25.737 373 231 15 70 431 88 425 1.37e-25 108
Msa0171300 AT4G35880.1 25.333 375 238 17 69 430 106 451 3.30e-25 108
Msa0171300 AT3G51340.2 26.087 414 254 16 39 430 64 447 7.41e-25 107
Msa0171300 AT1G49050.2 26.667 390 235 20 69 430 29 395 1.84e-24 105
Msa0171300 AT5G10770.1 26.260 377 235 15 67 431 129 474 3.37e-24 105
Msa0171300 AT2G03200.1 26.410 390 226 16 67 430 104 458 1.40e-23 103
Msa0171300 AT3G51330.3 27.778 414 254 17 39 430 63 453 6.51e-23 101
Msa0171300 AT3G51330.1 27.778 414 254 17 39 430 63 453 9.00e-23 101
Msa0171300 AT1G77480.2 27.901 405 246 19 44 430 43 419 2.86e-22 99.4
Msa0171300 AT3G20015.1 26.632 383 234 14 61 430 122 470 3.97e-22 99.4
Msa0171300 AT1G77480.1 27.211 441 268 20 45 467 44 449 4.48e-22 99.4
Msa0171300 AT4G30040.1 26.963 382 228 15 63 425 78 427 1.02e-21 97.8
Msa0171300 AT1G49050.3 28.475 295 180 14 52 335 187 461 1.15e-21 97.8
Msa0171300 AT1G31450.1 27.097 465 272 21 7 434 11 445 1.20e-21 97.8
Msa0171300 AT3G61820.1 26.166 386 241 13 61 430 126 483 1.28e-21 97.8
Msa0171300 AT3G51360.1 25.000 424 260 15 35 433 48 438 1.69e-21 97.4
Msa0171300 AT3G51340.1 25.060 419 264 14 39 430 64 459 1.92e-21 97.8
Msa0171300 AT3G51360.9 25.000 424 260 15 35 433 58 448 2.27e-21 97.4
Msa0171300 AT1G64830.1 28.756 386 213 16 68 431 84 429 2.36e-21 96.7
Msa0171300 AT4G35880.2 27.070 314 194 16 69 369 106 397 8.48e-21 95.1
Msa0171300 AT2G28040.1 24.865 370 229 13 70 432 65 392 2.36e-20 93.2
Msa0171300 AT2G28040.2 24.865 370 229 13 70 432 56 383 3.18e-20 92.8
Msa0171300 AT2G28010.1 24.194 372 232 11 69 432 64 393 3.36e-20 92.8
Msa0171300 AT5G45120.1 26.767 467 253 24 25 430 40 478 4.03e-20 93.6
Msa0171300 AT3G52500.1 27.833 406 226 17 68 431 88 468 4.79e-20 93.2
Msa0171300 AT5G33340.1 27.368 380 238 14 63 431 83 435 7.42e-20 92.4
Msa0171300 AT3G51360.7 24.479 384 238 14 69 433 4 354 7.85e-20 92.0
Msa0171300 AT2G42980.1 26.316 437 255 19 28 431 123 525 8.23e-20 92.8
Msa0171300 AT2G35615.1 26.024 415 253 17 46 434 61 447 1.35e-19 91.7
Msa0171300 AT3G51340.4 27.622 286 182 9 39 307 64 341 2.59e-19 90.1
Msa0171300 AT3G51340.3 27.622 286 182 9 39 307 64 341 2.71e-19 90.1
Msa0171300 AT4G30030.1 25.067 371 239 12 70 430 78 419 1.02e-18 88.6
Msa0171300 AT1G79720.1 28.010 382 220 18 70 430 135 482 1.58e-18 88.6
Msa0171300 AT3G51330.2 27.926 376 231 15 39 392 63 420 2.43e-18 87.8
Msa0171300 AT5G10760.1 23.958 384 238 15 63 430 119 464 6.83e-18 86.7
Msa0171300 AT1G09750.1 26.260 377 234 17 68 430 102 448 1.75e-17 85.1
Msa0171300 AT5G37540.1 24.031 387 232 15 74 430 84 438 1.99e-17 84.7
Msa0171300 AT5G07030.1 26.053 380 224 18 70 431 115 455 2.10e-17 85.1
Msa0171300 AT2G28030.1 22.312 372 239 13 69 432 60 389 2.88e-17 84.0
Msa0171300 AT1G66180.1 23.174 397 221 16 74 431 76 427 1.54e-16 82.0
Msa0171300 AT2G28225.1 21.958 378 237 13 69 432 66 399 1.95e-16 81.6
Msa0171300 AT3G51360.6 25.627 359 216 13 35 370 58 388 4.95e-16 80.5
Msa0171300 AT2G39710.1 25.258 388 225 20 74 426 69 426 5.08e-16 80.5
Msa0171300 AT3G51360.5 25.627 359 216 13 35 370 58 388 5.99e-16 80.1
Msa0171300 AT3G51360.4 25.627 359 216 13 35 370 48 378 7.91e-16 79.7
Msa0171300 AT3G51360.10 25.429 350 210 13 44 370 57 378 7.96e-16 80.1
Msa0171300 AT2G28220.1 21.564 422 256 16 29 432 35 399 1.09e-15 79.3
Msa0171300 AT3G59080.2 22.976 457 263 16 2 431 103 497 3.07e-15 78.6
Msa0171300 AT3G51360.2 27.018 285 182 9 35 305 58 330 1.00e-14 75.9
Msa0171300 AT5G02190.1 23.333 390 238 16 79 433 82 445 2.06e-14 75.9

Find 142 sgRNAs with CRISPR-Local

Find 755 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGATAATTTGGTGTTTC+AGG 0.166469 1_4:+55985191 Msa0171300:CDS
GATTAATGAACATACATATT+TGG 0.242714 1_4:-55988152 None:intergenic
GAAGCCCTTGATGGAATAAT+TGG 0.245572 1_4:+55987975 Msa0171300:CDS
TGGACATAGTAGTCCTTCTT+TGG 0.254367 1_4:-55986921 None:intergenic
CCCTCGGATATATTTGATTC+TGG 0.259620 1_4:+55990058 Msa0171300:CDS
AGTGGAGTTGTTCTGACTTT+TGG 0.268756 1_4:-55988125 None:intergenic
TGTCCTTTCCATCCTTAGTT+TGG 0.271260 1_4:-55991729 None:intergenic
GATATATTTGATTCTGGAAA+TGG 0.285563 1_4:+55990064 Msa0171300:CDS
TCATCCGTTGATTTCAATCT+TGG 0.285586 1_4:+55985282 Msa0171300:CDS
CTTCACGATAAAGGTGGTTT+TGG 0.287961 1_4:-55984793 None:intergenic
TGACTATCTGTTCCAATATA+AGG 0.288332 1_4:+55991259 Msa0171300:CDS
CTTGATGGAATAATTGGTTT+TGG 0.295754 1_4:+55987981 Msa0171300:CDS
TCTCCATAAGTTATGCTATA+GGG 0.307360 1_4:-55987269 None:intergenic
CTTGTACGATCTTGAGAATA+TGG 0.309985 1_4:+55994669 Msa0171300:CDS
GTCCTTTCCATCCTTAGTTT+GGG 0.310111 1_4:-55991728 None:intergenic
TGTCAATTACTTCACGATAA+AGG 0.328745 1_4:-55984802 None:intergenic
ACATATGATGGTCCGATTCC+TGG 0.332528 1_4:+55987224 Msa0171300:CDS
ATTATTGATTATACTAGCTT+TGG 0.334337 1_4:+55985149 Msa0171300:CDS
CAATATTCTACCAATTAAAA+AGG 0.337258 1_4:-55995207 None:intergenic
ATGCGAGCTAATTTCAATTC+AGG 0.348914 1_4:-55990250 None:intergenic
GGAAAGGACATGACACTTCT+TGG 0.353144 1_4:+55991742 Msa0171300:CDS
AAGTTCATACCACCTTATAT+TGG 0.354647 1_4:-55991271 None:intergenic
CAAATACCTTTGGAATTAGT+TGG 0.360512 1_4:-55990147 None:intergenic
TGTTGCGAATGGAGATAATT+TGG 0.363552 1_4:+55985182 Msa0171300:CDS
AATGGTCTTCCTACTAGAAC+TGG 0.364096 1_4:+55985309 Msa0171300:CDS
AATATTTGCCATAGGGGAAT+TGG 0.388793 1_4:+55988097 Msa0171300:CDS
TATTCCATCAAGGGCTTCTT+CGG 0.390964 1_4:-55987970 None:intergenic
AATGCATACATACACCGATT+TGG 0.391207 1_4:-55987010 None:intergenic
GAAGGTTTATGATTATATAA+TGG 0.403319 1_4:+55995455 Msa0171300:three_prime_UTR
TGTAACCTTTGCAGTGTTGA+TGG 0.403656 1_4:+55991176 Msa0171300:intron
TAGGCTGGTGTCCGATGTAT+TGG 0.403880 1_4:+55991688 Msa0171300:intron
TGCCCCTATAGCATAACTTA+TGG 0.404144 1_4:+55987266 Msa0171300:CDS
AGGTTGTATTTCACTAAACT+TGG 0.408327 1_4:+55986888 Msa0171300:intron
TCAAAATGTAGTTTGACAAC+TGG 0.411155 1_4:-55991206 None:intergenic
TATGATGTGAAATGTGAGTA+TGG 0.417643 1_4:-55985025 None:intergenic
TATTTCACTAAACTTGGGCT+TGG 0.419254 1_4:+55986894 Msa0171300:CDS
TTGAAGAATATTGAAGTTGA+TGG 0.419885 1_4:+55990019 Msa0171300:CDS
CGCTGTACAATCTGGTACAT+TGG 0.424783 1_4:+55987938 Msa0171300:CDS
TCTGAAGTATGAGATCCCTT+TGG 0.425665 1_4:-55987167 None:intergenic
ATAAGAATCTATACGAGAAC+TGG 0.434723 1_4:-55995371 None:intergenic
GATTTCAATCTTGGTGGTAA+TGG 0.434766 1_4:+55985291 Msa0171300:CDS
TCTTCCGAAGAAGCCCTTGA+TGG 0.436173 1_4:+55987966 Msa0171300:CDS
CTGAAGTATGAGATCCCTTT+GGG 0.444221 1_4:-55987166 None:intergenic
TGCATCCTTCACTTTAATGC+TGG 0.446229 1_4:-55995132 None:intergenic
ATCTCCATAAGTTATGCTAT+AGG 0.446865 1_4:-55987270 None:intergenic
ACTAAAAGAAAACACAAGAT+AGG 0.448084 1_4:+55984704 Msa0171300:five_prime_UTR
TGTTATATATTAAATGATGA+AGG 0.449165 1_4:+55995437 Msa0171300:three_prime_UTR
ATAAGTTATGCTATAGGGGC+AGG 0.450756 1_4:-55987264 None:intergenic
CAACTACTGGATACTATGTC+AGG 0.454687 1_4:+55987300 Msa0171300:CDS
TAGATTCTTATAGATGCAAA+AGG 0.456456 1_4:+55995383 Msa0171300:three_prime_UTR
ATATATTTGATTCTGGAAAT+GGG 0.463580 1_4:+55990065 Msa0171300:CDS
TCCGTTGATTTCAATCTTGG+TGG 0.470108 1_4:+55985285 Msa0171300:CDS
ACTGCACACCTTATCATTCA+AGG 0.476752 1_4:-55995325 None:intergenic
TACTATGTCCAAGTTGATAC+AGG 0.477388 1_4:+55986933 Msa0171300:CDS
TCATAATTCCTTGAATGATA+AGG 0.478561 1_4:+55995317 Msa0171300:three_prime_UTR
TCCGCCTTACAACCAGGAAT+CGG 0.485297 1_4:-55987236 None:intergenic
TCTGAATAATCGATTAATGA+TGG 0.486504 1_4:+55985113 Msa0171300:exon
TGGTTCCACCAATTCCCCTA+TGG 0.487442 1_4:-55988105 None:intergenic
ATTGATCAATTTAATTTCAA+CGG 0.492965 1_4:-55984902 None:intergenic
GCTGTACAATCTGGTACATT+GGG 0.498203 1_4:+55987939 Msa0171300:CDS
TTGAGAATATGGCCATTGGA+TGG 0.503254 1_4:+55994680 Msa0171300:CDS
CACTGCCTTGACAATATTCG+TGG 0.504030 1_4:+55988068 Msa0171300:CDS
TGTCCTACGAAAAGCCAAAT+CGG 0.504507 1_4:+55986996 Msa0171300:CDS
CAAAACCAATTATTCCATCA+AGG 0.505616 1_4:-55987980 None:intergenic
GGTGTGCAGTGTGGTTGATA+TGG 0.506968 1_4:+55995338 Msa0171300:three_prime_UTR
AAAGTGAAGGATGCAACGAC+TGG 0.508416 1_4:+55995140 Msa0171300:CDS
AGATTCTTATAGATGCAAAA+GGG 0.509842 1_4:+55995384 Msa0171300:three_prime_UTR
TTTGATTCTGGAAATGGGAA+GGG 0.510094 1_4:+55990070 Msa0171300:CDS
GAGACTCACCCAGTTCTAGT+AGG 0.514151 1_4:-55985318 None:intergenic
ATTTGCCATAGGGGAATTGG+TGG 0.515298 1_4:+55988100 Msa0171300:CDS
TGGTCCGATTCCTGGTTGTA+AGG 0.515945 1_4:+55987232 Msa0171300:CDS
TAATTTCAATTCAGGCTGAC+GGG 0.516305 1_4:-55990242 None:intergenic
TATAGCATAACTTATGGAGA+TGG 0.523472 1_4:+55987272 Msa0171300:CDS
CGTCGGAAAACGAGTTTAAG+TGG 0.524546 1_4:+55985219 Msa0171300:CDS
GGTTGTATTTCACTAAACTT+GGG 0.524940 1_4:+55986889 Msa0171300:intron
GGAGATGGAAGTGCAACTAC+TGG 0.525159 1_4:+55987287 Msa0171300:CDS
AAAACCAATTATTCCATCAA+GGG 0.529475 1_4:-55987979 None:intergenic
TATGGAGATTTCCGTTGATC+CGG 0.531316 1_4:-55987340 None:intergenic
AGTTGGTCATAAACTATGAC+AGG 0.531572 1_4:-55990130 None:intergenic
TTGATTCTGGAAATGGGAAG+GGG 0.532454 1_4:+55990071 Msa0171300:CDS
AAGGGGACAGTGATTGATAG+TGG 0.533492 1_4:+55990088 Msa0171300:CDS
GGTGGTGGAATATTTGCCAT+AGG 0.534159 1_4:+55988089 Msa0171300:CDS
TGGGCTTGGCTCTCCAAAGA+AGG 0.534533 1_4:+55986908 Msa0171300:CDS
GTGGTGGAATATTTGCCATA+GGG 0.535995 1_4:+55988090 Msa0171300:CDS
GAAAAGTGTGACCCAAACTA+AGG 0.537843 1_4:+55991717 Msa0171300:CDS
GATCTTGAGAATATGGCCAT+TGG 0.539820 1_4:+55994676 Msa0171300:CDS
CTCCATAAGTTATGCTATAG+GGG 0.541427 1_4:-55987268 None:intergenic
ATTTGATTCTGGAAATGGGA+AGG 0.541579 1_4:+55990069 Msa0171300:CDS
GATTGATAGTGGAACAACCT+TGG 0.548951 1_4:+55990099 Msa0171300:CDS
CTAATTTCAATTCAGGCTGA+CGG 0.548990 1_4:-55990243 None:intergenic
TGGTGTTTCAGGTGCAGCGT+CGG 0.553360 1_4:+55985202 Msa0171300:CDS
CTCTTCCAGCATTAAAGTGA+AGG 0.554484 1_4:+55995127 Msa0171300:CDS
AATGGCGTACTTTCCAGCAT+AGG 0.555725 1_4:-55990296 None:intergenic
ACAGCTTGCTGCATCTCGAA+AGG 0.556530 1_4:+55988028 Msa0171300:CDS
AGTGTGACCCAAACTAAGGA+TGG 0.559654 1_4:+55991721 Msa0171300:CDS
GGTGTTTCCGCCTTACAACC+AGG 0.561933 1_4:-55987242 None:intergenic
CGAAATTTGAGTCCACTGAG+TGG 0.566394 1_4:+55984738 Msa0171300:five_prime_UTR
ATGGCGTACTTTCCAGCATA+GGG 0.567058 1_4:-55990295 None:intergenic
TATCACTTCCTGTATCAACT+TGG 0.567282 1_4:-55986941 None:intergenic
AACCTTTGCAGTGTTGATGG+TGG 0.574389 1_4:+55991179 Msa0171300:intron
CAGTAGAGTGAATGAATGAG+TGG 0.577972 1_4:-55984948 None:intergenic
AGGTGTGGCGCTGTACAATC+TGG 0.587242 1_4:+55987930 Msa0171300:intron
CTTGACAATATTCGTGGTGG+TGG 0.588390 1_4:+55988074 Msa0171300:CDS
CAAGCTTAACCGACTAAGAG+AGG 0.593128 1_4:-55984986 None:intergenic
CAATTACTTCACGATAAAGG+TGG 0.594398 1_4:-55984799 None:intergenic
TTGACTCTCTATGACCCAAA+GGG 0.594661 1_4:+55987152 Msa0171300:CDS
AGGAATCGGACCATCATATG+TGG 0.599832 1_4:-55987222 None:intergenic
CTGGTGTCCGATGTATTGGC+TGG 0.602129 1_4:+55991692 Msa0171300:CDS
AAGGACATGACACTTCTTGG+AGG 0.602130 1_4:+55991745 Msa0171300:CDS
TGAGAATATGGCCATTGGAT+GGG 0.606149 1_4:+55994681 Msa0171300:CDS
GACCCAAACTAAGGATGGAA+AGG 0.607035 1_4:+55991726 Msa0171300:CDS
CCAGAATCAAATATATCCGA+GGG 0.608496 1_4:-55990058 None:intergenic
ATTGAAATTAGCTCGCATTG+AGG 0.611001 1_4:+55990255 Msa0171300:CDS
TCCAGAATCAAATATATCCG+AGG 0.613600 1_4:-55990059 None:intergenic
GAAATTTGAGTCCACTGAGT+GGG 0.614261 1_4:+55984739 Msa0171300:five_prime_UTR
AGTAGAGTGAATGAATGAGT+GGG 0.617908 1_4:-55984947 None:intergenic
AAAAGTCAGAACAACTCCAC+TGG 0.619798 1_4:+55988127 Msa0171300:CDS
TGATGTTCTACAGCTTCCCT+CGG 0.625997 1_4:+55990042 Msa0171300:CDS
TTATGACCAACTAATTCCAA+AGG 0.627083 1_4:+55990141 Msa0171300:CDS
ATTGTATTCAGCCCATCCAA+TGG 0.633726 1_4:-55994692 None:intergenic
GATTCTTATAGATGCAAAAG+GGG 0.635162 1_4:+55995385 Msa0171300:three_prime_UTR
CTTGACTCTCTATGACCCAA+AGG 0.636415 1_4:+55987151 Msa0171300:CDS
TAAGTTATGCTATAGGGGCA+GGG 0.637715 1_4:-55987263 None:intergenic
ACCACCAAGATTGAAATCAA+CGG 0.639049 1_4:-55985286 None:intergenic
CTATCTGTTCCAATATAAGG+TGG 0.639723 1_4:+55991262 Msa0171300:CDS
TCCGATTCCTGGTTGTAAGG+CGG 0.644021 1_4:+55987235 Msa0171300:CDS
TATGACAGGAAGATAAGCCA+AGG 0.645179 1_4:-55990116 None:intergenic
ACATACATATTTGGTACCAG+TGG 0.645303 1_4:-55988143 None:intergenic
CACCACCACGAATATTGTCA+AGG 0.649946 1_4:-55988073 None:intergenic
AACTACTGGATACTATGTCA+GGG 0.651961 1_4:+55987301 Msa0171300:CDS
TGGTGGAATATTTGCCATAG+GGG 0.652757 1_4:+55988091 Msa0171300:CDS
ATGGTCTTCCTACTAGAACT+GGG 0.663957 1_4:+55985310 Msa0171300:CDS
TACAGGAAGTGATATTCTGT+GGG 0.670376 1_4:+55986950 Msa0171300:CDS
ACTGGAATAGTACATACAGT+GGG 0.679660 1_4:+55995158 Msa0171300:CDS
ATACAGGAAGTGATATTCTG+TGG 0.684061 1_4:+55986949 Msa0171300:CDS
GACTGGAATAGTACATACAG+TGG 0.688634 1_4:+55995157 Msa0171300:CDS
TTGTAGGGCACATTACAATG+TGG 0.689913 1_4:+55989994 Msa0171300:intron
TATTGGAACAGATAGTCATG+AGG 0.699625 1_4:-55991254 None:intergenic
TGCCTTGACAATATTCGTGG+TGG 0.718049 1_4:+55988071 Msa0171300:CDS
GAATGATAAGGTGTGCAGTG+TGG 0.729307 1_4:+55995329 Msa0171300:three_prime_UTR
CATCACGATCATCTTCGTCG+TGG 0.733562 1_4:+55985249 Msa0171300:CDS
GATGTGAAATGTGAGTATGG+AGG 0.752371 1_4:-55985022 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTAGTTTATTTGATTT+AGG + chr1_4:55986868-55986887 Msa0171300:intron 10.0%
!! AAATACAAAAATTAAATAAG+GGG - chr1_4:55987102-55987121 None:intergenic 10.0%
!! GAAAATACAAAAATTAAATA+AGG - chr1_4:55987104-55987123 None:intergenic 10.0%
!! ATAAAATCCAATAAAAAAAA+TGG - chr1_4:55988572-55988591 None:intergenic 10.0%
!!! CTTTAAAATTTTATTTAACT+AGG + chr1_4:55991031-55991050 Msa0171300:intron 10.0%
!! GTAGATTAAAAAAATAAAAT+AGG - chr1_4:55991995-55992014 None:intergenic 10.0%
!!! TTTTTCTAATACTAAAAAAA+TGG - chr1_4:55994934-55994953 None:intergenic 10.0%
!!! ATTGATCAATTTAATTTCAA+CGG - chr1_4:55984905-55984924 None:intergenic 15.0%
!!! AATGTTTTTAAAAATATGCT+AGG + chr1_4:55985863-55985882 Msa0171300:intron 15.0%
!!! TACTTTTAATGTTATCATTA+CGG + chr1_4:55985900-55985919 Msa0171300:intron 15.0%
!!! AATAAGTTGAAAATAACTTA+TGG + chr1_4:55986593-55986612 Msa0171300:intron 15.0%
!! ATAAAACAGTTAATTCAAAA+AGG - chr1_4:55987568-55987587 None:intergenic 15.0%
!!! TTTTTGAATTAACTGTTTTA+TGG + chr1_4:55987567-55987586 Msa0171300:intron 15.0%
!!! TTTATGGTACTAAAATATTT+TGG + chr1_4:55987583-55987602 Msa0171300:intron 15.0%
!!! ATTTTATTTTTGTTCTTTGA+TGG + chr1_4:55988585-55988604 Msa0171300:intron 15.0%
!!! TTTTATTTTTGTTCTTTGAT+GGG + chr1_4:55988586-55988605 Msa0171300:intron 15.0%
!!! CATTTTATGAATCATTTAAA+TGG - chr1_4:55989518-55989537 None:intergenic 15.0%
!! CTTAAAGACAAATTTATAAA+TGG + chr1_4:55989556-55989575 Msa0171300:intron 15.0%
!!! AAATTTATAAATGGTTGATA+TGG + chr1_4:55989565-55989584 Msa0171300:intron 15.0%
!!! AATTTATAAATGGTTGATAT+GGG + chr1_4:55989566-55989585 Msa0171300:intron 15.0%
!! AATTCAATTAATATTTCTTC+TGG + chr1_4:55990185-55990204 Msa0171300:intron 15.0%
!! ATTAGCATAAAATAAAATAG+AGG + chr1_4:55990616-55990635 Msa0171300:intron 15.0%
!!! TCCTTTTCATTTTATTTTTT+GGG + chr1_4:55990840-55990859 Msa0171300:intron 15.0%
!!! TGATTATTTTTCGATTTATT+AGG + chr1_4:55991862-55991881 Msa0171300:intron 15.0%
!!! ATTATTTTCAATTTCAGATT+TGG + chr1_4:55994627-55994646 Msa0171300:intron 15.0%
!! TAGTATTAGAAAAATAAGAA+AGG + chr1_4:55994940-55994959 Msa0171300:intron 15.0%
!!! TTAACTTCTATTGTTTTTTA+GGG + chr1_4:55995038-55995057 Msa0171300:intron 15.0%
!! GTTATAAAAATAGTTTAACA+TGG - chr1_4:55995255-55995274 None:intergenic 15.0%
!!! GTTAAACTATTTTTATAACT+AGG + chr1_4:55995256-55995275 Msa0171300:CDS 15.0%
!! TGTTATATATTAAATGATGA+AGG + chr1_4:55995437-55995456 Msa0171300:three_prime_UTR 15.0%
!!! TCTATGTTTGGAAAATTTTT+AGG - chr1_4:55984844-55984863 None:intergenic 20.0%
!!! AAGATTATCTTTTCTATGTT+TGG - chr1_4:55984856-55984875 None:intergenic 20.0%
!!! ATTATTGATTATACTAGCTT+TGG + chr1_4:55985149-55985168 Msa0171300:CDS 20.0%
!!! ACTTTTAATGTTATCATTAC+GGG + chr1_4:55985901-55985920 Msa0171300:intron 20.0%
!! TTAACTGTAGTATAATGTAA+TGG + chr1_4:55986240-55986259 Msa0171300:intron 20.0%
!! TCTAAAAAAGATCGAAAAAA+TGG + chr1_4:55986793-55986812 Msa0171300:intron 20.0%
!! ATACAATACAATGTAAATTG+TGG - chr1_4:55987421-55987440 None:intergenic 20.0%
!!! ATTGTTGTTGAATTGAATTA+GGG + chr1_4:55987483-55987502 Msa0171300:intron 20.0%
!! CTTTAATTCTTTATCAATCT+AGG - chr1_4:55987843-55987862 None:intergenic 20.0%
!! GAATTAAAGAATAAAATCAC+TGG + chr1_4:55987854-55987873 Msa0171300:intron 20.0%
!! GATTAATGAACATACATATT+TGG - chr1_4:55988155-55988174 None:intergenic 20.0%
!!! AGATTGTGGATTTTATTTTT+GGG + chr1_4:55988378-55988397 Msa0171300:intron 20.0%
!!! ATATATTTGATTCTGGAAAT+GGG + chr1_4:55990065-55990084 Msa0171300:CDS 20.0%
!! AAAAATGTTACAATGGTAAA+TGG - chr1_4:55990317-55990336 None:intergenic 20.0%
!! TCTATACAAAAATGTTACAA+TGG - chr1_4:55990324-55990343 None:intergenic 20.0%
!! TCATTATTCATTTATCCTAT+TGG + chr1_4:55990484-55990503 Msa0171300:intron 20.0%
!! CATTATTCATTTATCCTATT+GGG + chr1_4:55990485-55990504 Msa0171300:intron 20.0%
!!! GTCCTTTTCATTTTATTTTT+TGG + chr1_4:55990839-55990858 Msa0171300:intron 20.0%
!!! TTTTAAAGAACCATCTTAAA+TGG - chr1_4:55991019-55991038 None:intergenic 20.0%
!! TCATGTGATTGTAAATTAAA+TGG + chr1_4:55991489-55991508 Msa0171300:intron 20.0%
!! TAGAACTGAAAAATAAACTA+GGG - chr1_4:55992041-55992060 None:intergenic 20.0%
!! ATAGAACTGAAAAATAAACT+AGG - chr1_4:55992042-55992061 None:intergenic 20.0%
!! CAAATTATCAATTGCATAAA+AGG - chr1_4:55993539-55993558 None:intergenic 20.0%
!!! ATAAAAAATGTTGTTTTGCA+TGG - chr1_4:55993698-55993717 None:intergenic 20.0%
!!! AGAATGTTTATTTTTGTGAA+CGG + chr1_4:55994041-55994060 Msa0171300:intron 20.0%
!! TTTATCATATGTTATTCTTG+TGG - chr1_4:55994214-55994233 None:intergenic 20.0%
!! TAGACCAACATATTATTAAT+AGG - chr1_4:55994306-55994325 None:intergenic 20.0%
!! ATTCTTAAATTAACACCAAA+TGG - chr1_4:55994473-55994492 None:intergenic 20.0%
!!! GTTAACTTCTATTGTTTTTT+AGG + chr1_4:55995037-55995056 Msa0171300:intron 20.0%
!! CAATATTCTACCAATTAAAA+AGG - chr1_4:55995210-55995229 None:intergenic 20.0%
!!! GCGATTTTTTGAATTTTTTT+TGG + chr1_4:55995407-55995426 Msa0171300:three_prime_UTR 20.0%
! ACTAAAAGAAAACACAAGAT+AGG + chr1_4:55984704-55984723 Msa0171300:five_prime_UTR 25.0%
! TCTGAATAATCGATTAATGA+TGG + chr1_4:55985113-55985132 Msa0171300:exon 25.0%
! TCATATTCATTAAATTGACG+TGG - chr1_4:55985408-55985427 None:intergenic 25.0%
!! TGATTCAGTGTTATTAATAG+TGG + chr1_4:55985474-55985493 Msa0171300:intron 25.0%
!!! TCAGTTTTAATTCATGTTTC+TGG - chr1_4:55985642-55985661 None:intergenic 25.0%
!!! TTTTTGCATATTGGTGATAT+CGG - chr1_4:55985969-55985988 None:intergenic 25.0%
! ATGATGCTCTATAGTTTAAT+TGG + chr1_4:55986151-55986170 Msa0171300:intron 25.0%
! TATAGTTTAATTGGTATGCA+CGG + chr1_4:55986160-55986179 Msa0171300:intron 25.0%
! ATTATTGAAGCAATACAATG+TGG + chr1_4:55986394-55986413 Msa0171300:intron 25.0%
!!! TGGATAAACAACTTATTTTG+CGG + chr1_4:55986451-55986470 Msa0171300:intron 25.0%
! AAACATGCTCTAACTATAAA+TGG + chr1_4:55986706-55986725 Msa0171300:intron 25.0%
! AACATGCTCTAACTATAAAT+GGG + chr1_4:55986707-55986726 Msa0171300:intron 25.0%
!!! TTTCGATCTTTTTTAGATCT+TGG - chr1_4:55986790-55986809 None:intergenic 25.0%
!!! AAAATAGCAGCATCATTTTT+GGG + chr1_4:55987372-55987391 Msa0171300:CDS 25.0%
!! ATTGTATGTTGTTGAGTTTT+CGG + chr1_4:55987434-55987453 Msa0171300:intron 25.0%
!! CATTGTTGTTGAATTGAATT+AGG + chr1_4:55987482-55987501 Msa0171300:intron 25.0%
!! TTGTTGTTGAATTGAATTAG+GGG + chr1_4:55987484-55987503 Msa0171300:intron 25.0%
!! TAAATAGAGCAATTTTGCAT+TGG - chr1_4:55987716-55987735 None:intergenic 25.0%
! AATGCAAAATTGCTCTATTT+AGG + chr1_4:55987715-55987734 Msa0171300:intron 25.0%
! CACTTGAATGGAAAATATTT+GGG - chr1_4:55987779-55987798 None:intergenic 25.0%
! AAAACCAATTATTCCATCAA+GGG - chr1_4:55987982-55988001 None:intergenic 25.0%
!! AGTTGATATGCAATTAAAGT+AGG + chr1_4:55988315-55988334 Msa0171300:intron 25.0%
! GTTGATATGCAATTAAAGTA+GGG + chr1_4:55988316-55988335 Msa0171300:intron 25.0%
!!! AAAGAAAATTTTCGAGATTG+TGG + chr1_4:55988364-55988383 Msa0171300:intron 25.0%
!!! GAGATTGTGGATTTTATTTT+TGG + chr1_4:55988377-55988396 Msa0171300:intron 25.0%
!!! TATGTTGTTTTTTACACAAG+AGG - chr1_4:55988473-55988492 None:intergenic 25.0%
! CTTGTGTAAAAAACAACATA+AGG + chr1_4:55988473-55988492 Msa0171300:intron 25.0%
!! TTTGCATTTTTCTATCCATT+TGG + chr1_4:55988778-55988797 Msa0171300:intron 25.0%
! CACTAAAACATTTATCCAAA+TGG - chr1_4:55988796-55988815 None:intergenic 25.0%
!!! CATTTGGATAAATGTTTTAG+TGG + chr1_4:55988794-55988813 Msa0171300:intron 25.0%
! AATACAGTAACTGATGTTAA+GGG + chr1_4:55989023-55989042 Msa0171300:intron 25.0%
!!! GAAGGCAAATTTTTGTTTAT+GGG + chr1_4:55989235-55989254 Msa0171300:intron 25.0%
! TATATATTGAGGTAGATGTT+AGG - chr1_4:55989456-55989475 None:intergenic 25.0%
! CCTATTCTAATGATATTTGA+TGG - chr1_4:55989645-55989664 None:intergenic 25.0%
! CCATCAAATATCATTAGAAT+AGG + chr1_4:55989642-55989661 Msa0171300:intron 25.0%
! TTGAAGAATATTGAAGTTGA+TGG + chr1_4:55990019-55990038 Msa0171300:CDS 25.0%
!! GATATATTTGATTCTGGAAA+TGG + chr1_4:55990064-55990083 Msa0171300:CDS 25.0%
! TTTCTAGATACAAATACCTT+TGG - chr1_4:55990160-55990179 None:intergenic 25.0%
! AACAGCAAAATATGACATTT+GGG - chr1_4:55990548-55990567 None:intergenic 25.0%
! AAACAGCAAAATATGACATT+TGG - chr1_4:55990549-55990568 None:intergenic 25.0%
!! AGTTTTTATAGCACATAATG+TGG - chr1_4:55990782-55990801 None:intergenic 25.0%
! GCCCAAAAAATAAAATGAAA+AGG - chr1_4:55990844-55990863 None:intergenic 25.0%
! GTCTCTACACATATAATATA+TGG - chr1_4:55991468-55991487 None:intergenic 25.0%
! TATCAGTAAAATTCTCCATA+TGG - chr1_4:55991566-55991585 None:intergenic 25.0%
! AGCAACAAGTTTAACAAAAT+GGG - chr1_4:55991619-55991638 None:intergenic 25.0%
! TAGCAACAAGTTTAACAAAA+TGG - chr1_4:55991620-55991639 None:intergenic 25.0%
! TGCAAACTTATAAGCAAATA+AGG - chr1_4:55991901-55991920 None:intergenic 25.0%
! TCATTCTAAACTATTCAACT+TGG + chr1_4:55991947-55991966 Msa0171300:intron 25.0%
!!! TTTTTTGGTTTGTTGTATGA+TGG + chr1_4:55992524-55992543 Msa0171300:intron 25.0%
!! AATTATGTGTTACTAGTACT+TGG + chr1_4:55992751-55992770 Msa0171300:intron 25.0%
! TTACGAATGTAAGTTATTTG+AGG + chr1_4:55992820-55992839 Msa0171300:intron 25.0%
! AACATCATATACTTGTTTGA+AGG - chr1_4:55992884-55992903 None:intergenic 25.0%
! TTTGTTCTCTAATGAAAGAT+TGG + chr1_4:55992961-55992980 Msa0171300:intron 25.0%
! ATTCCTATTATGATTCCTAT+CGG + chr1_4:55993272-55993291 Msa0171300:intron 25.0%
! CTTGATAAGAGTTTATAAAC+AGG - chr1_4:55993388-55993407 None:intergenic 25.0%
! ACAAATGACATATTCACAAT+TGG + chr1_4:55993751-55993770 Msa0171300:intron 25.0%
!! AGCATAAACAAAAGCATAAT+AGG + chr1_4:55993963-55993982 Msa0171300:intron 25.0%
!! ATAAACAAAAGCATAATAGG+TGG + chr1_4:55993966-55993985 Msa0171300:intron 25.0%
!! TAAACAAAAGCATAATAGGT+GGG + chr1_4:55993967-55993986 Msa0171300:intron 25.0%
! CCTTCATTCCATTTATAATT+TGG - chr1_4:55994013-55994032 None:intergenic 25.0%
! CCAAATTATAAATGGAATGA+AGG + chr1_4:55994010-55994029 Msa0171300:intron 25.0%
! TATAAATGGAATGAAGGTTA+AGG + chr1_4:55994016-55994035 Msa0171300:intron 25.0%
! ATAAATGGAATGAAGGTTAA+GGG + chr1_4:55994017-55994036 Msa0171300:intron 25.0%
! GCATCCTATTAATAATATGT+TGG + chr1_4:55994299-55994318 Msa0171300:intron 25.0%
!! TCTGATGCTAAAATTCATTT+TGG + chr1_4:55994375-55994394 Msa0171300:intron 25.0%
! TCTAATGCTAGAATTCATTT+GGG + chr1_4:55994554-55994573 Msa0171300:intron 25.0%
! CAGAATTATGAAATGCTAAT+TGG - chr1_4:55994726-55994745 None:intergenic 25.0%
!! TTTTTACCATACAACAAAGT+AGG - chr1_4:55994752-55994771 None:intergenic 25.0%
! TGCATATTAATGTATAACTG+TGG - chr1_4:55994778-55994797 None:intergenic 25.0%
! TAATATGCAAAATTAGTCCA+AGG + chr1_4:55994789-55994808 Msa0171300:intron 25.0%
! AAAATATTTCAAACTGGAGT+AGG - chr1_4:55994885-55994904 None:intergenic 25.0%
! AGCTGAAAAATATTTCAAAC+TGG - chr1_4:55994891-55994910 None:intergenic 25.0%
! TCATAATTCCTTGAATGATA+AGG + chr1_4:55995317-55995336 Msa0171300:three_prime_UTR 25.0%
! TAGATTCTTATAGATGCAAA+AGG + chr1_4:55995383-55995402 Msa0171300:three_prime_UTR 25.0%
! AGATTCTTATAGATGCAAAA+GGG + chr1_4:55995384-55995403 Msa0171300:three_prime_UTR 25.0%
TGTCAATTACTTCACGATAA+AGG - chr1_4:55984805-55984824 None:intergenic 30.0%
!!! TGTTTTTTTCCTCTCTTAGT+CGG + chr1_4:55984977-55984996 Msa0171300:five_prime_UTR 30.0%
TATGATGTGAAATGTGAGTA+TGG - chr1_4:55985028-55985047 None:intergenic 30.0%
! AACTCTCTATAACAGCTTTT+TGG - chr1_4:55985455-55985474 None:intergenic 30.0%
TGTATGTTTGGTATCACAAT+GGG - chr1_4:55985716-55985735 None:intergenic 30.0%
ATTGTGATACCAAACATACA+CGG + chr1_4:55985716-55985735 Msa0171300:intron 30.0%
CACTATTACACATCAGTATT+TGG - chr1_4:55986052-55986071 None:intergenic 30.0%
CAAATACTGATGTGTAATAG+TGG + chr1_4:55986050-55986069 Msa0171300:intron 30.0%
GATGTGTAATAGTGGTATAA+CGG + chr1_4:55986058-55986077 Msa0171300:intron 30.0%
! ACTCAGTGTTGTTAAATAAC+TGG - chr1_4:55986091-55986110 None:intergenic 30.0%
ATCCTAAAATATCTTCACAG+CGG - chr1_4:55986215-55986234 None:intergenic 30.0%
TGTGGAACTTGATAAAATCT+TGG + chr1_4:55986412-55986431 Msa0171300:intron 30.0%
GTGGAACTTGATAAAATCTT+GGG + chr1_4:55986413-55986432 Msa0171300:intron 30.0%
TGGAACTTGATAAAATCTTG+GGG + chr1_4:55986414-55986433 Msa0171300:intron 30.0%
GCTTATTTGAGCTTATCTAT+TGG - chr1_4:55986680-55986699 None:intergenic 30.0%
TAGTTAGAGCATGTTTAGAT+TGG - chr1_4:55986702-55986721 None:intergenic 30.0%
ACATGCTCTAACTATAAATG+GGG + chr1_4:55986708-55986727 Msa0171300:intron 30.0%
TATTAGGAGACAGACAAATA+GGG - chr1_4:55986758-55986777 None:intergenic 30.0%
TTATTAGGAGACAGACAAAT+AGG - chr1_4:55986759-55986778 None:intergenic 30.0%
AGGTTGTATTTCACTAAACT+TGG + chr1_4:55986888-55986907 Msa0171300:intron 30.0%
GGTTGTATTTCACTAAACTT+GGG + chr1_4:55986889-55986908 Msa0171300:intron 30.0%
TCTCCATAAGTTATGCTATA+GGG - chr1_4:55987272-55987291 None:intergenic 30.0%
ATCTCCATAAGTTATGCTAT+AGG - chr1_4:55987273-55987292 None:intergenic 30.0%
TATAGCATAACTTATGGAGA+TGG + chr1_4:55987272-55987291 Msa0171300:CDS 30.0%
!!! AAAATGATGCTGCTATTTTG+CGG - chr1_4:55987371-55987390 None:intergenic 30.0%
! CAAAATAGCAGCATCATTTT+TGG + chr1_4:55987371-55987390 Msa0171300:CDS 30.0%
! TTGTATGTTGTTGAGTTTTC+GGG + chr1_4:55987435-55987454 Msa0171300:intron 30.0%
TGTTGTTGAATTGAATTAGG+GGG + chr1_4:55987485-55987504 Msa0171300:intron 30.0%
!!! TTGTTCTTTTTTCTCATGAG+TGG + chr1_4:55987510-55987529 Msa0171300:intron 30.0%
!!! TGTTCTTTTTTCTCATGAGT+GGG + chr1_4:55987511-55987530 Msa0171300:intron 30.0%
CCACTTGAATGGAAAATATT+TGG - chr1_4:55987780-55987799 None:intergenic 30.0%
! CCAAATATTTTCCATTCAAG+TGG + chr1_4:55987777-55987796 Msa0171300:intron 30.0%
CAAAACCAATTATTCCATCA+AGG - chr1_4:55987983-55988002 None:intergenic 30.0%
!! CTTGATGGAATAATTGGTTT+TGG + chr1_4:55987981-55988000 Msa0171300:CDS 30.0%
!!! ATTTTATTTTTGGGAAGCCT+TGG + chr1_4:55988387-55988406 Msa0171300:intron 30.0%
TATACAATACACCAATTGGT+GGG + chr1_4:55988499-55988518 Msa0171300:intron 30.0%
TTAATAGTGGTCATGAATCT+CGG - chr1_4:55988726-55988745 None:intergenic 30.0%
TATTAAAACCAACCACTGTA+GGG + chr1_4:55988740-55988759 Msa0171300:intron 30.0%
ACCCTTAAAATCAATGTAGT+GGG - chr1_4:55988833-55988852 None:intergenic 30.0%
AACCCTTAAAATCAATGTAG+TGG - chr1_4:55988834-55988853 None:intergenic 30.0%
!! TTTCTGAAATATACCATCCA+TGG - chr1_4:55988892-55988911 None:intergenic 30.0%
TGGATGGTATATTTCAGAAA+AGG + chr1_4:55988892-55988911 Msa0171300:intron 30.0%
GGATGGTATATTTCAGAAAA+GGG + chr1_4:55988893-55988912 Msa0171300:intron 30.0%
TATTTCAGAAAAGGGAAAAG+AGG + chr1_4:55988901-55988920 Msa0171300:intron 30.0%
ATTTCAGAAAAGGGAAAAGA+GGG + chr1_4:55988902-55988921 Msa0171300:intron 30.0%
ACCTTTCATTTATTACTCCT+AGG - chr1_4:55988985-55989004 None:intergenic 30.0%
CAATACAGTAACTGATGTTA+AGG + chr1_4:55989022-55989041 Msa0171300:intron 30.0%
AGCTTAACTGCTACAATAAT+AGG - chr1_4:55989049-55989068 None:intergenic 30.0%
GAGGTATATTCCAAAAATGA+GGG + chr1_4:55989086-55989105 Msa0171300:intron 30.0%
ATGTTAAGTGGAAATTTGAG+AGG + chr1_4:55989147-55989166 Msa0171300:intron 30.0%
TCCTTTCATCTATTACTACT+GGG - chr1_4:55989175-55989194 None:intergenic 30.0%
!! GGAAGGCAAATTTTTGTTTA+TGG + chr1_4:55989234-55989253 Msa0171300:intron 30.0%
CTGTGAACATATGAGTATAT+TGG - chr1_4:55989362-55989381 None:intergenic 30.0%
! TTTTCTGTAGTTCACTAGAA+GGG + chr1_4:55989825-55989844 Msa0171300:intron 30.0%
CAGATATGGATATATCCTAT+GGG - chr1_4:55989860-55989879 None:intergenic 30.0%
TCAGATATGGATATATCCTA+TGG - chr1_4:55989861-55989880 None:intergenic 30.0%
TCCATGAATATTCTTTCAGT+TGG + chr1_4:55989898-55989917 Msa0171300:intron 30.0%
ACCAACTGAAAGAATATTCA+TGG - chr1_4:55989902-55989921 None:intergenic 30.0%
!! TTGATATTCAGTTTAGCTCT+TGG + chr1_4:55989932-55989951 Msa0171300:intron 30.0%
!! TGATATTCAGTTTAGCTCTT+GGG + chr1_4:55989933-55989952 Msa0171300:intron 30.0%
TTATGACCAACTAATTCCAA+AGG + chr1_4:55990141-55990160 Msa0171300:CDS 30.0%
!! CAAATACCTTTGGAATTAGT+TGG - chr1_4:55990150-55990169 None:intergenic 30.0%
!! TATTTCTTCTGGAGTACTTA+TGG + chr1_4:55990196-55990215 Msa0171300:intron 30.0%
! TTTAAATGTTTTCCCTATGC+TGG + chr1_4:55990283-55990302 Msa0171300:CDS 30.0%
!! TCCATTTCCTTAGTTTGTTA+AGG + chr1_4:55990871-55990890 Msa0171300:intron 30.0%
!! CCATTTCCTTAGTTTGTTAA+GGG + chr1_4:55990872-55990891 Msa0171300:intron 30.0%
ATTACTCCCTTAACAAACTA+AGG - chr1_4:55990881-55990900 None:intergenic 30.0%
TACAAAAGAGCCATTTAAGA+TGG + chr1_4:55991006-55991025 Msa0171300:intron 30.0%
TCAAAATGTAGTTTGACAAC+TGG - chr1_4:55991209-55991228 None:intergenic 30.0%
! AGTTGTCAAACTACATTTTG+AGG + chr1_4:55991208-55991227 Msa0171300:CDS 30.0%
! GTTGTCAAACTACATTTTGA+GGG + chr1_4:55991209-55991228 Msa0171300:CDS 30.0%
TGACTATCTGTTCCAATATA+AGG + chr1_4:55991259-55991278 Msa0171300:CDS 30.0%
AAGTTCATACCACCTTATAT+TGG - chr1_4:55991274-55991293 None:intergenic 30.0%
ATATAACACACAAAACACCT+GGG - chr1_4:55991426-55991445 None:intergenic 30.0%
TTGAAGTCAAGAGTTAACAA+AGG - chr1_4:55991528-55991547 None:intergenic 30.0%
TGATGATCTAAATTGCCATA+TGG + chr1_4:55991548-55991567 Msa0171300:intron 30.0%
! TTTCCTTAATTTTGTCCTCT+AGG + chr1_4:55991669-55991688 Msa0171300:intron 30.0%
ATTCCTCATATTGAACCAAA+TGG + chr1_4:55991820-55991839 Msa0171300:intron 30.0%
! ATTCCATTTGGTTCAATATG+AGG - chr1_4:55991826-55991845 None:intergenic 30.0%
CACAAATAACACAGTTATCA+AGG - chr1_4:55992461-55992480 None:intergenic 30.0%
!!! TTGTGCTTGCTTTGTTTTTT+TGG + chr1_4:55992509-55992528 Msa0171300:intron 30.0%
!! ATGTTGTGATGTATTTTAGG+AGG - chr1_4:55992658-55992677 None:intergenic 30.0%
! GTGATGTTGTGATGTATTTT+AGG - chr1_4:55992661-55992680 None:intergenic 30.0%
! ATTCGTAACAAGCTTTTTGA+GGG - chr1_4:55992808-55992827 None:intergenic 30.0%
!!! ATGTTTTGATGATTCCAAAG+AGG + chr1_4:55992899-55992918 Msa0171300:intron 30.0%
CAAAACATATAGAAGTTGAC+TGG - chr1_4:55992945-55992964 None:intergenic 30.0%
!! TTATCACATTCTAGTTCCAT+AGG + chr1_4:55993012-55993031 Msa0171300:intron 30.0%
GTAAGCAAGTTGTTAATACA+CGG - chr1_4:55993137-55993156 None:intergenic 30.0%
! TCAGGTTATTGTCTTTTCAT+GGG - chr1_4:55993186-55993205 None:intergenic 30.0%
!! TTCAGGTTATTGTCTTTTCA+TGG - chr1_4:55993187-55993206 None:intergenic 30.0%
AGGAATCATATTGACATTGT+TGG - chr1_4:55993258-55993277 None:intergenic 30.0%
GTGATCCTTTGTAGAAATTT+GGG + chr1_4:55993316-55993335 Msa0171300:intron 30.0%
TGATCCTTTGTAGAAATTTG+GGG + chr1_4:55993317-55993336 Msa0171300:intron 30.0%
GATAAGAGTTTATAAACAGG+AGG - chr1_4:55993385-55993404 None:intergenic 30.0%
TCAATTGCATAAAAGGATGT+TGG - chr1_4:55993532-55993551 None:intergenic 30.0%
! CATATTCACAATTGGTGATA+AGG + chr1_4:55993759-55993778 Msa0171300:intron 30.0%
GAATGTTTATAGATAGACAC+TGG - chr1_4:55993859-55993878 None:intergenic 30.0%
GCATGGTACCAAATTATAAA+TGG + chr1_4:55994002-55994021 Msa0171300:intron 30.0%
AAGCCTATAAGAGAAAGTTA+AGG - chr1_4:55994438-55994457 None:intergenic 30.0%
!! CTTTAAAATGTTGAGCCATT+TGG + chr1_4:55994455-55994474 Msa0171300:intron 30.0%
CTCTAATGCTAGAATTCATT+TGG + chr1_4:55994553-55994572 Msa0171300:intron 30.0%
AAAATCCTTCTCACAAGTAT+TGG + chr1_4:55994577-55994596 Msa0171300:intron 30.0%
AATGAAGAGGAGATAATCTT+AGG - chr1_4:55994833-55994852 None:intergenic 30.0%
!! TAAGATTCATGTGGATTAGA+TGG - chr1_4:55995015-55995034 None:intergenic 30.0%
TCTAATCCACATGAATCTTA+TGG + chr1_4:55995015-55995034 Msa0171300:intron 30.0%
AGTTAACCATAAGATTCATG+TGG - chr1_4:55995024-55995043 None:intergenic 30.0%
! CACTGTGTTATTGTTTCTTT+AGG + chr1_4:55995104-55995123 Msa0171300:intron 30.0%
! TCAGCTTCTACCTTTTTAAT+TGG + chr1_4:55995197-55995216 Msa0171300:CDS 30.0%
ATAAGAATCTATACGAGAAC+TGG - chr1_4:55995374-55995393 None:intergenic 30.0%
GATTCTTATAGATGCAAAAG+GGG + chr1_4:55995385-55995404 Msa0171300:three_prime_UTR 30.0%
CAATTACTTCACGATAAAGG+TGG - chr1_4:55984802-55984821 None:intergenic 35.0%
AGTAGAGTGAATGAATGAGT+GGG - chr1_4:55984950-55984969 None:intergenic 35.0%
! GAAATTTTGTGTGTTGCGAA+TGG + chr1_4:55985171-55985190 Msa0171300:CDS 35.0%
TGTTGCGAATGGAGATAATT+TGG + chr1_4:55985182-55985201 Msa0171300:CDS 35.0%
!! TGGAGATAATTTGGTGTTTC+AGG + chr1_4:55985191-55985210 Msa0171300:CDS 35.0%
!! TCATCCGTTGATTTCAATCT+TGG + chr1_4:55985282-55985301 Msa0171300:CDS 35.0%
ACCACCAAGATTGAAATCAA+CGG - chr1_4:55985289-55985308 None:intergenic 35.0%
! GATTTCAATCTTGGTGGTAA+TGG + chr1_4:55985291-55985310 Msa0171300:CDS 35.0%
! TGATCTACTCATCGGATTTT+TGG - chr1_4:55985504-55985523 None:intergenic 35.0%
GTGTATGTTTGGTATCACAA+TGG - chr1_4:55985717-55985736 None:intergenic 35.0%
!! TGCTGATTCAGTAATGAGAT+GGG - chr1_4:55985830-55985849 None:intergenic 35.0%
!! ATGCTGATTCAGTAATGAGA+TGG - chr1_4:55985831-55985850 None:intergenic 35.0%
AATCCATACCACTGAAATAG+CGG - chr1_4:55985996-55986015 None:intergenic 35.0%
ATGGATTCACAACAGCATAT+TGG + chr1_4:55986009-55986028 Msa0171300:intron 35.0%
TCCTAAAATATCTTCACAGC+GGG - chr1_4:55986214-55986233 None:intergenic 35.0%
ATGGACATGTCATAACTCAT+AGG + chr1_4:55986612-55986631 Msa0171300:intron 35.0%
TAAGCACTTGTGAGATTGTT+TGG - chr1_4:55986655-55986674 None:intergenic 35.0%
! ATCTTGGTGTGAGGTTTATT+AGG - chr1_4:55986774-55986793 None:intergenic 35.0%
!!! CTTTTTTAGATCTTGGTGTG+AGG - chr1_4:55986783-55986802 None:intergenic 35.0%
TATTTCACTAAACTTGGGCT+TGG + chr1_4:55986894-55986913 Msa0171300:CDS 35.0%
!! TACTATGTCCAAGTTGATAC+AGG + chr1_4:55986933-55986952 Msa0171300:CDS 35.0%
TATCACTTCCTGTATCAACT+TGG - chr1_4:55986944-55986963 None:intergenic 35.0%
ATACAGGAAGTGATATTCTG+TGG + chr1_4:55986949-55986968 Msa0171300:CDS 35.0%
TACAGGAAGTGATATTCTGT+GGG + chr1_4:55986950-55986969 Msa0171300:CDS 35.0%
! AATGCATACATACACCGATT+TGG - chr1_4:55987013-55987032 None:intergenic 35.0%
! GTTGTTGTTGTTACAACAGA+TGG + chr1_4:55987127-55987146 Msa0171300:intron 35.0%
! TTTTGCTCTTCCACATATGA+TGG + chr1_4:55987212-55987231 Msa0171300:CDS 35.0%
CTCCATAAGTTATGCTATAG+GGG - chr1_4:55987271-55987290 None:intergenic 35.0%
AACTACTGGATACTATGTCA+GGG + chr1_4:55987301-55987320 Msa0171300:CDS 35.0%
CAGTTAATTCAAAAAGGCAG+CGG - chr1_4:55987562-55987581 None:intergenic 35.0%
TATCTTAACATGTGCCTTGA+GGG - chr1_4:55987625-55987644 None:intergenic 35.0%
!!! TGGAATAATTGGTTTTGGAC+AGG + chr1_4:55987986-55988005 Msa0171300:CDS 35.0%
AATATTTGCCATAGGGGAAT+TGG + chr1_4:55988097-55988116 Msa0171300:CDS 35.0%
ACATACATATTTGGTACCAG+TGG - chr1_4:55988146-55988165 None:intergenic 35.0%
TTGATCTCATGCCTTGATAT+TGG + chr1_4:55988182-55988201 Msa0171300:intron 35.0%
TTACATGACAGCCAATATCA+AGG - chr1_4:55988196-55988215 None:intergenic 35.0%
GATCAATTGATCGTGAAATG+AGG - chr1_4:55988282-55988301 None:intergenic 35.0%
GCTGTATACAATACACCAAT+TGG + chr1_4:55988495-55988514 Msa0171300:intron 35.0%
GTATACAATACACCAATTGG+TGG + chr1_4:55988498-55988517 Msa0171300:intron 35.0%
CAATAAAAAAAATGGCAGCC+CGG - chr1_4:55988564-55988583 None:intergenic 35.0%
!!! ACAGTGGTTGGTTTTAATAG+TGG - chr1_4:55988739-55988758 None:intergenic 35.0%
CTATTAAAACCAACCACTGT+AGG + chr1_4:55988739-55988758 Msa0171300:intron 35.0%
!!! AGCCCACTACATTGATTTTA+AGG + chr1_4:55988828-55988847 Msa0171300:intron 35.0%
!!! GCCCACTACATTGATTTTAA+GGG + chr1_4:55988829-55988848 Msa0171300:intron 35.0%
AAATATACCATCCATGGCTT+GGG - chr1_4:55988886-55988905 None:intergenic 35.0%
ACACGTGAAAGAGATTTAGT+GGG + chr1_4:55988925-55988944 Msa0171300:intron 35.0%
GGAGAGATGTTTATACAAAC+TGG + chr1_4:55988946-55988965 Msa0171300:intron 35.0%
ATACAAACTGGAAATCGAGT+AGG + chr1_4:55988958-55988977 Msa0171300:intron 35.0%
TACAAACTGGAAATCGAGTA+GGG + chr1_4:55988959-55988978 Msa0171300:intron 35.0%
GCCTAGGAGTAATAAATGAA+AGG + chr1_4:55988981-55989000 Msa0171300:intron 35.0%
TTATTGTAGCAGTTAAGCTG+TGG + chr1_4:55989050-55989069 Msa0171300:intron 35.0%
! GGAGGTATATTCCAAAAATG+AGG + chr1_4:55989085-55989104 Msa0171300:intron 35.0%
ATTCCAAAAATGAGGGAAAG+AGG + chr1_4:55989093-55989112 Msa0171300:intron 35.0%
! ATTCCTCTTTCCCTCATTTT+TGG - chr1_4:55989099-55989118 None:intergenic 35.0%
AATACATGGAGTAGACTTAG+TGG + chr1_4:55989116-55989135 Msa0171300:intron 35.0%
ATACATGGAGTAGACTTAGT+GGG + chr1_4:55989117-55989136 Msa0171300:intron 35.0%
TCCCAGTAGTAATAGATGAA+AGG + chr1_4:55989171-55989190 Msa0171300:intron 35.0%
CTCCTTTCATCTATTACTAC+TGG - chr1_4:55989176-55989195 None:intergenic 35.0%
CAGTAGTAATAGATGAAAGG+AGG + chr1_4:55989174-55989193 Msa0171300:intron 35.0%
TAGTAATAGATGAAAGGAGG+TGG + chr1_4:55989177-55989196 Msa0171300:intron 35.0%
CTTTGGCGTTTCTATTATTG+TGG + chr1_4:55989414-55989433 Msa0171300:intron 35.0%
AGTGAACTACAGAAAACCAA+CGG - chr1_4:55989821-55989840 None:intergenic 35.0%
! GTTTTCTGTAGTTCACTAGA+AGG + chr1_4:55989824-55989843 Msa0171300:intron 35.0%
TTTCAAAGCAGTCTCAGATA+TGG - chr1_4:55989874-55989893 None:intergenic 35.0%
! AGTCTGTTGTTGACTATTGT+AGG + chr1_4:55989978-55989997 Msa0171300:intron 35.0%
! GTCTGTTGTTGACTATTGTA+GGG + chr1_4:55989979-55989998 Msa0171300:intron 35.0%
CCAGAATCAAATATATCCGA+GGG - chr1_4:55990061-55990080 None:intergenic 35.0%
TCCAGAATCAAATATATCCG+AGG - chr1_4:55990062-55990081 None:intergenic 35.0%
! ATTTGATTCTGGAAATGGGA+AGG + chr1_4:55990069-55990088 Msa0171300:CDS 35.0%
! TTTGATTCTGGAAATGGGAA+GGG + chr1_4:55990070-55990089 Msa0171300:CDS 35.0%
AGTTGGTCATAAACTATGAC+AGG - chr1_4:55990133-55990152 None:intergenic 35.0%
TAATTTCAATTCAGGCTGAC+GGG - chr1_4:55990245-55990264 None:intergenic 35.0%
CTAATTTCAATTCAGGCTGA+CGG - chr1_4:55990246-55990265 None:intergenic 35.0%
ATGCGAGCTAATTTCAATTC+AGG - chr1_4:55990253-55990272 None:intergenic 35.0%
ATTGAAATTAGCTCGCATTG+AGG + chr1_4:55990255-55990274 Msa0171300:CDS 35.0%
! TTAACTTTTGCACTTGAGCA+AGG + chr1_4:55990695-55990714 Msa0171300:intron 35.0%
!! AGAGTGCTAATTCCTTTTCT+CGG + chr1_4:55990817-55990836 Msa0171300:intron 35.0%
AAATGAAAAGGACCGAGAAA+AGG - chr1_4:55990832-55990851 None:intergenic 35.0%
CCCTTAACAAACTAAGGAAA+TGG - chr1_4:55990875-55990894 None:intergenic 35.0%
TTGTTAAGGGAGTAATTGAG+TGG + chr1_4:55990885-55990904 Msa0171300:intron 35.0%
TGTTAAGGGAGTAATTGAGT+GGG + chr1_4:55990886-55990905 Msa0171300:intron 35.0%
! TAGACTTTTTGTTGCTAGAC+AGG + chr1_4:55990968-55990987 Msa0171300:intron 35.0%
TATTGGAACAGATAGTCATG+AGG - chr1_4:55991257-55991276 None:intergenic 35.0%
CTATCTGTTCCAATATAAGG+TGG + chr1_4:55991262-55991281 Msa0171300:CDS 35.0%
GATATAACACACAAAACACC+TGG - chr1_4:55991427-55991446 None:intergenic 35.0%
TAGCTATTGAGCATTCCATT+TGG - chr1_4:55991838-55991857 None:intergenic 35.0%
GAAGTTGTCCCAACAAAAAT+CGG - chr1_4:55992288-55992307 None:intergenic 35.0%
!!! TGTTTTGGAGGTTCTTTTGT+TGG + chr1_4:55992335-55992354 Msa0171300:intron 35.0%
!!! TGTTTTTGGTCTTTTGTCAC+TGG + chr1_4:55992398-55992417 Msa0171300:intron 35.0%
!! AGGTCTACTGGTTCATAATT+TGG + chr1_4:55992433-55992452 Msa0171300:intron 35.0%
CCAAGTTAGAGATAAAGAGA+GGG - chr1_4:55992633-55992652 None:intergenic 35.0%
TTCAGAGATAGAGATGACAA+AGG - chr1_4:55992733-55992752 None:intergenic 35.0%
!! TTCGTAACAAGCTTTTTGAG+GGG - chr1_4:55992807-55992826 None:intergenic 35.0%
! CATTCGTAACAAGCTTTTTG+AGG - chr1_4:55992809-55992828 None:intergenic 35.0%
ATATCGTCACCAAATCTTTG+CGG - chr1_4:55992849-55992868 None:intergenic 35.0%
ATTAGAGAGAAGATCCTCTT+TGG - chr1_4:55992916-55992935 None:intergenic 35.0%
TCTCTAATGAAAGATTGGAC+TGG + chr1_4:55992966-55992985 Msa0171300:intron 35.0%
TTTCAGTGAAATTGGTCCTA+TGG - chr1_4:55993031-55993050 None:intergenic 35.0%
GAGTTGCATTTCAGTGAAAT+TGG - chr1_4:55993039-55993058 None:intergenic 35.0%
! TGGGTGGAAGTATAATTTAG+TGG - chr1_4:55993167-55993186 None:intergenic 35.0%
ACACCGATAGGAATCATAAT+AGG - chr1_4:55993278-55993297 None:intergenic 35.0%
GGTGATCCTTTGTAGAAATT+TGG + chr1_4:55993315-55993334 Msa0171300:intron 35.0%
TAGTCCCCAAATTTCTACAA+AGG - chr1_4:55993324-55993343 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_4:55993341-55993360 Msa0171300:intron 35.0%
TGATGCCAATAACTATCATG+AGG + chr1_4:55993565-55993584 Msa0171300:intron 35.0%
GAAAAACTACCTTGTCACAT+CGG + chr1_4:55993594-55993613 Msa0171300:intron 35.0%
AGGAGATATCGAAAATTGCT+CGG - chr1_4:55993667-55993686 None:intergenic 35.0%
! TTTTAGTCATGAAGCACAGT+TGG - chr1_4:55993723-55993742 None:intergenic 35.0%
CTCACTATAATCTTGACCAT+AGG + chr1_4:55993783-55993802 Msa0171300:intron 35.0%
TGTTTATAGATAGACACTGG+TGG - chr1_4:55993856-55993875 None:intergenic 35.0%
TAATCCATGACTGATGAGAT+GGG - chr1_4:55993886-55993905 None:intergenic 35.0%
ATAATCCATGACTGATGAGA+TGG - chr1_4:55993887-55993906 None:intergenic 35.0%
CTCGATTCATAACATAGTTC+AGG - chr1_4:55993932-55993951 None:intergenic 35.0%
GTAAAATCAGCAGAAGATGA+TGG + chr1_4:55994069-55994088 Msa0171300:intron 35.0%
AAAACATGAGCTGAAACACA+TGG + chr1_4:55994117-55994136 Msa0171300:intron 35.0%
!! TTGGTGTCACTTATGAATGA+CGG - chr1_4:55994149-55994168 None:intergenic 35.0%
TGACACCAAACCTATTCAAA+GGG + chr1_4:55994160-55994179 Msa0171300:intron 35.0%
TATACAGTACCATGATTGAG+GGG - chr1_4:55994279-55994298 None:intergenic 35.0%
CTATACAGTACCATGATTGA+GGG - chr1_4:55994280-55994299 None:intergenic 35.0%
TGCTCAAGGTTTAACACAAA+TGG - chr1_4:55994346-55994365 None:intergenic 35.0%
AAAAAAAACGCTTGTGAGAC+GGG - chr1_4:55994405-55994424 None:intergenic 35.0%
GAAAAAAAACGCTTGTGAGA+CGG - chr1_4:55994406-55994425 None:intergenic 35.0%
AGAGAAAGTTAAGGCAGAAA+GGG - chr1_4:55994429-55994448 None:intergenic 35.0%
AAGAGAAAGTTAAGGCAGAA+AGG - chr1_4:55994430-55994449 None:intergenic 35.0%
CTGCCTTAACTTTCTCTTAT+AGG + chr1_4:55994432-55994451 Msa0171300:intron 35.0%
AGAAAGAGAGAGAGAAAATG+AGG - chr1_4:55994533-55994552 None:intergenic 35.0%
CTTGTACGATCTTGAGAATA+TGG + chr1_4:55994669-55994688 Msa0171300:CDS 35.0%
! CTGTTTCCTACTTTGTTGTA+TGG + chr1_4:55994743-55994762 Msa0171300:intron 35.0%
GTTATAACTTGATGCAACCT+TGG - chr1_4:55994809-55994828 None:intergenic 35.0%
! TGAAGTTGGTTCAAATGAAG+AGG - chr1_4:55994846-55994865 None:intergenic 35.0%
ACTGGAATAGTACATACAGT+GGG + chr1_4:55995158-55995177 Msa0171300:CDS 35.0%
GAAATTTGAGTCCACTGAGT+GGG + chr1_4:55984739-55984758 Msa0171300:five_prime_UTR 40.0%
! CTTCACGATAAAGGTGGTTT+TGG - chr1_4:55984796-55984815 None:intergenic 40.0%
CAGTAGAGTGAATGAATGAG+TGG - chr1_4:55984951-55984970 None:intergenic 40.0%
GATGTGAAATGTGAGTATGG+AGG - chr1_4:55985025-55985044 None:intergenic 40.0%
!! TCCGTTGATTTCAATCTTGG+TGG + chr1_4:55985285-55985304 Msa0171300:CDS 40.0%
AATGGTCTTCCTACTAGAAC+TGG + chr1_4:55985309-55985328 Msa0171300:CDS 40.0%
ATGGTCTTCCTACTAGAACT+GGG + chr1_4:55985310-55985329 Msa0171300:CDS 40.0%
ATGCTGCATGATCTACTCAT+CGG - chr1_4:55985512-55985531 None:intergenic 40.0%
AACTTCACTCCGTGTATGTT+TGG - chr1_4:55985728-55985747 None:intergenic 40.0%
! GAGTGAAGTTTGAAGTGAAG+AGG + chr1_4:55985738-55985757 Msa0171300:intron 40.0%
! GTTTGAAGTGAAGAGGAAGA+TGG + chr1_4:55985745-55985764 Msa0171300:intron 40.0%
AAGTGAAGAGGAAGATGGAA+AGG + chr1_4:55985750-55985769 Msa0171300:intron 40.0%
TTACCTAGGTAGTAGGGTTT+AGG + chr1_4:55985791-55985810 Msa0171300:intron 40.0%
TACCTAGGTAGTAGGGTTTA+GGG + chr1_4:55985792-55985811 Msa0171300:intron 40.0%
! GCTGATTCAGTAATGAGATG+GGG - chr1_4:55985829-55985848 None:intergenic 40.0%
! AGCGGTGACTTTTTGCATAT+TGG - chr1_4:55985978-55985997 None:intergenic 40.0%
! AAAAGTCACCGCTATTTCAG+TGG + chr1_4:55985985-55986004 Msa0171300:intron 40.0%
! TCCCGCTGTGAAGATATTTT+AGG + chr1_4:55986210-55986229 Msa0171300:intron 40.0%
TTGGGGACTAAGACTTTGTT+TGG + chr1_4:55986431-55986450 Msa0171300:intron 40.0%
CTTATTTCCATAAGCTCTCC+AGG - chr1_4:55986579-55986598 None:intergenic 40.0%
TGGACATAGTAGTCCTTCTT+TGG - chr1_4:55986924-55986943 None:intergenic 40.0%
TGTCCTACGAAAAGCCAAAT+CGG + chr1_4:55986996-55987015 Msa0171300:CDS 40.0%
TTGACTCTCTATGACCCAAA+GGG + chr1_4:55987152-55987171 Msa0171300:CDS 40.0%
CTGAAGTATGAGATCCCTTT+GGG - chr1_4:55987169-55987188 None:intergenic 40.0%
! TCTGAAGTATGAGATCCCTT+TGG - chr1_4:55987170-55987189 None:intergenic 40.0%
TAAGTTATGCTATAGGGGCA+GGG - chr1_4:55987266-55987285 None:intergenic 40.0%
ATAAGTTATGCTATAGGGGC+AGG - chr1_4:55987267-55987286 None:intergenic 40.0%
TGCCCCTATAGCATAACTTA+TGG + chr1_4:55987266-55987285 Msa0171300:CDS 40.0%
CAACTACTGGATACTATGTC+AGG + chr1_4:55987300-55987319 Msa0171300:CDS 40.0%
!! GGGACTATCTTACTTTTGAC+CGG + chr1_4:55987321-55987340 Msa0171300:CDS 40.0%
!! CTTACTTTTGACCGGATCAA+CGG + chr1_4:55987329-55987348 Msa0171300:CDS 40.0%
TATGGAGATTTCCGTTGATC+CGG - chr1_4:55987343-55987362 None:intergenic 40.0%
!! TCTCATGAGTGGGTTATCTT+CGG + chr1_4:55987521-55987540 Msa0171300:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + chr1_4:55987608-55987627 Msa0171300:intron 40.0%
GTATCTTAACATGTGCCTTG+AGG - chr1_4:55987626-55987645 None:intergenic 40.0%
TTGCTTAACATGTGCCCTAA+GGG + chr1_4:55987738-55987757 Msa0171300:intron 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG - chr1_4:55987755-55987774 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG - chr1_4:55987756-55987775 None:intergenic 40.0%
ACTTAAACTCGCCACTTGAA+TGG - chr1_4:55987791-55987810 None:intergenic 40.0%
ATTCAAGTGGCGAGTTTAAG+TGG + chr1_4:55987790-55987809 Msa0171300:intron 40.0%
TTCAAGTGGCGAGTTTAAGT+GGG + chr1_4:55987791-55987810 Msa0171300:intron 40.0%
GCTGTACAATCTGGTACATT+GGG + chr1_4:55987939-55987958 Msa0171300:CDS 40.0%
TATTCCATCAAGGGCTTCTT+CGG - chr1_4:55987973-55987992 None:intergenic 40.0%
GAAGCCCTTGATGGAATAAT+TGG + chr1_4:55987975-55987994 Msa0171300:CDS 40.0%
! GTGGTGGAATATTTGCCATA+GGG + chr1_4:55988090-55988109 Msa0171300:CDS 40.0%
TGGTGGAATATTTGCCATAG+GGG + chr1_4:55988091-55988110 Msa0171300:CDS 40.0%
! AGTGGAGTTGTTCTGACTTT+TGG - chr1_4:55988128-55988147 None:intergenic 40.0%
AAAAGTCAGAACAACTCCAC+TGG + chr1_4:55988127-55988146 Msa0171300:CDS 40.0%
TTGGCTGTCATGTAAATCCA+AGG + chr1_4:55988201-55988220 Msa0171300:intron 40.0%
TGGCTGTCATGTAAATCCAA+GGG + chr1_4:55988202-55988221 Msa0171300:intron 40.0%
GTTGTTGTCACATGACTGAA+AGG + chr1_4:55988422-55988441 Msa0171300:intron 40.0%
TTACACAAGAGGCTGTTTAC+AGG - chr1_4:55988462-55988481 None:intergenic 40.0%
!!! CGGGCTGCCATTTTTTTTAT+TGG + chr1_4:55988562-55988581 Msa0171300:intron 40.0%
TCTTTGATGGGAATCCTCAT+AGG + chr1_4:55988598-55988617 Msa0171300:intron 40.0%
CTAACTAGCAATCTTAGCCA+AGG - chr1_4:55988640-55988659 None:intergenic 40.0%
CTTGGCTAAGATTGCTAGTT+AGG + chr1_4:55988638-55988657 Msa0171300:intron 40.0%
AGCTTTACCTGCAATGTCAA+GGG - chr1_4:55988701-55988720 None:intergenic 40.0%
AAGCTTTACCTGCAATGTCA+AGG - chr1_4:55988702-55988721 None:intergenic 40.0%
ATAGTGCAGCATTTAAGCCA+CGG + chr1_4:55988859-55988878 Msa0171300:intron 40.0%
AATATACCATCCATGGCTTG+GGG - chr1_4:55988885-55988904 None:intergenic 40.0%
GAAATATACCATCCATGGCT+TGG - chr1_4:55988887-55988906 None:intergenic 40.0%
GACACGTGAAAGAGATTTAG+TGG + chr1_4:55988924-55988943 Msa0171300:intron 40.0%
AATATACCTCCAACTCCTTG+GGG - chr1_4:55989076-55989095 None:intergenic 40.0%
GAATATACCTCCAACTCCTT+GGG - chr1_4:55989077-55989096 None:intergenic 40.0%
ATGAGGGAAAGAGGAATACA+TGG + chr1_4:55989102-55989121 Msa0171300:intron 40.0%
TTCCTCCATATTCATGTCTC+TGG - chr1_4:55989214-55989233 None:intergenic 40.0%
AGAGACATGAATATGGAGGA+AGG + chr1_4:55989213-55989232 Msa0171300:intron 40.0%
ACATGAATATGGAGGAAGGA+AGG + chr1_4:55989217-55989236 Msa0171300:intron 40.0%
TTGTTTATGGGTATATGCGC+TGG + chr1_4:55989247-55989266 Msa0171300:intron 40.0%
TGTTTATGGGTATATGCGCT+GGG + chr1_4:55989248-55989267 Msa0171300:intron 40.0%
ACTCCCTTTCGTATCTTCTT+TGG + chr1_4:55989397-55989416 Msa0171300:intron 40.0%
ACGCCAAAGAAGATACGAAA+GGG - chr1_4:55989403-55989422 None:intergenic 40.0%
AACGCCAAAGAAGATACGAA+AGG - chr1_4:55989404-55989423 None:intergenic 40.0%
TATATGCATGATAGCTCCGT+TGG + chr1_4:55989802-55989821 Msa0171300:intron 40.0%
TTGTAGGGCACATTACAATG+TGG + chr1_4:55989994-55990013 Msa0171300:intron 40.0%
CCCTCGGATATATTTGATTC+TGG + chr1_4:55990058-55990077 Msa0171300:CDS 40.0%
! TTGATTCTGGAAATGGGAAG+GGG + chr1_4:55990071-55990090 Msa0171300:CDS 40.0%
!! GATTGATAGTGGAACAACCT+TGG + chr1_4:55990099-55990118 Msa0171300:CDS 40.0%
TATGACAGGAAGATAAGCCA+AGG - chr1_4:55990119-55990138 None:intergenic 40.0%
GATGTTGTCACATACCCAAT+AGG - chr1_4:55990502-55990521 None:intergenic 40.0%
!!! TCCAATATTTTGAAGCCTGC+TGG + chr1_4:55990584-55990603 Msa0171300:intron 40.0%
TCCAGCAGGCTTCAAAATAT+TGG - chr1_4:55990588-55990607 None:intergenic 40.0%
!!! AATATTTTGAAGCCTGCTGG+AGG + chr1_4:55990587-55990606 Msa0171300:intron 40.0%
GACATATGACAGTAGCAAGT+AGG + chr1_4:55990638-55990657 Msa0171300:intron 40.0%
AACAAGTGCACTTGATTCTC+TGG + chr1_4:55991122-55991141 Msa0171300:intron 40.0%
CAACACTGCAAAGGTTACAA+TGG - chr1_4:55991175-55991194 None:intergenic 40.0%
! TGTAACCTTTGCAGTGTTGA+TGG + chr1_4:55991176-55991195 Msa0171300:intron 40.0%
CAGCCTAGAGGACAAAATTA+AGG - chr1_4:55991675-55991694 None:intergenic 40.0%
! CTTAATTTTGTCCTCTAGGC+TGG + chr1_4:55991673-55991692 Msa0171300:intron 40.0%
! TTTTCTGCCAGCCAATACAT+CGG - chr1_4:55991702-55991721 None:intergenic 40.0%
! GAAAAGTGTGACCCAAACTA+AGG + chr1_4:55991717-55991736 Msa0171300:CDS 40.0%
GTCCTTTCCATCCTTAGTTT+GGG - chr1_4:55991731-55991750 None:intergenic 40.0%
TGTCCTTTCCATCCTTAGTT+TGG - chr1_4:55991732-55991751 None:intergenic 40.0%
! TCAACTTGGTATCTAGAGCA+AGG + chr1_4:55991961-55991980 Msa0171300:intron 40.0%
TCACTGTGAATGTTGTCTTG+AGG + chr1_4:55992362-55992381 Msa0171300:intron 40.0%
CAAACATTCCAACAACAGTG+TGG - chr1_4:55992492-55992511 None:intergenic 40.0%
TGGCTGGAGATGAAATGTAT+TGG - chr1_4:55992554-55992573 None:intergenic 40.0%
ATACATTTCATCTCCAGCCA+CGG + chr1_4:55992554-55992573 Msa0171300:intron 40.0%
TGGGATCATGGAATTTAGAC+TGG + chr1_4:55992582-55992601 Msa0171300:intron 40.0%
TGGAATTTAGACTGGTGCTT+CGG + chr1_4:55992590-55992609 Msa0171300:intron 40.0%
CCCTCTCTTTATCTCTAACT+TGG + chr1_4:55992630-55992649 Msa0171300:intron 40.0%
GCCAAGTTAGAGATAAAGAG+AGG - chr1_4:55992634-55992653 None:intergenic 40.0%
! AATACCAGTAACTTGTGCCT+TGG - chr1_4:55992698-55992717 None:intergenic 40.0%
AAGGCACAAGTTACTGGTAT+TGG + chr1_4:55992697-55992716 Msa0171300:intron 40.0%
TATCGTCACCAAATCTTTGC+GGG - chr1_4:55992848-55992867 None:intergenic 40.0%
AAAGGCTGAATACCAGGTTA+AGG - chr1_4:55993106-55993125 None:intergenic 40.0%
TGGTATTCAGCCTTTGTACT+CGG + chr1_4:55993111-55993130 Msa0171300:intron 40.0%
! GGTTATTGTCTTTTCATGGG+TGG - chr1_4:55993183-55993202 None:intergenic 40.0%
AGAGTCCTATCTAACCAATC+TGG + chr1_4:55993406-55993425 Msa0171300:intron 40.0%
GAGTCCTATCTAACCAATCT+GGG + chr1_4:55993407-55993426 Msa0171300:intron 40.0%
! TAGTCCCAGATTGGTTAGAT+AGG - chr1_4:55993414-55993433 None:intergenic 40.0%
AAAGCCAACACAAGGCAATT+AGG + chr1_4:55993447-55993466 Msa0171300:intron 40.0%
AAGCCAACACAAGGCAATTA+GGG + chr1_4:55993448-55993467 Msa0171300:intron 40.0%
TTAGGGGCAGATCTCAATAA+AGG + chr1_4:55993465-55993484 Msa0171300:intron 40.0%
CCTCTCCTCATGATAGTTAT+TGG - chr1_4:55993573-55993592 None:intergenic 40.0%
CCAATAACTATCATGAGGAG+AGG + chr1_4:55993570-55993589 Msa0171300:intron 40.0%
CTTATTATGCCGATGTGACA+AGG - chr1_4:55993606-55993625 None:intergenic 40.0%
TCGGCATAATAAGACACATC+TGG + chr1_4:55993613-55993632 Msa0171300:intron 40.0%
TGAACTATCTCACTGTGATC+AGG - chr1_4:55993639-55993658 None:intergenic 40.0%
! TGTTTTGCATGGTGAGTTAG+AGG - chr1_4:55993687-55993706 None:intergenic 40.0%
TGGATTATCTCCACACTGAA+TGG + chr1_4:55993899-55993918 Msa0171300:intron 40.0%
GGATTATCTCCACACTGAAT+GGG + chr1_4:55993900-55993919 Msa0171300:intron 40.0%
!! AAGATGATGGAGCCAGATTA+GGG + chr1_4:55994082-55994101 Msa0171300:intron 40.0%
GTGACACCAAACCTATTCAA+AGG + chr1_4:55994159-55994178 Msa0171300:intron 40.0%
GACACCAAACCTATTCAAAG+GGG + chr1_4:55994161-55994180 Msa0171300:intron 40.0%
TTCTCCCCTTTGAATAGGTT+TGG - chr1_4:55994168-55994187 None:intergenic 40.0%
GAATCTTCTCCCCTTTGAAT+AGG - chr1_4:55994173-55994192 None:intergenic 40.0%
ATTCAAAGGGGAGAAGATTC+TGG + chr1_4:55994173-55994192 Msa0171300:intron 40.0%
ATACAGTACCATGATTGAGG+GGG - chr1_4:55994278-55994297 None:intergenic 40.0%
GCTATACAGTACCATGATTG+AGG - chr1_4:55994281-55994300 None:intergenic 40.0%
GAGAAAGTTAAGGCAGAAAG+GGG - chr1_4:55994428-55994447 None:intergenic 40.0%
GAGAGAGAAAATGAGGATCA+AGG - chr1_4:55994526-55994545 None:intergenic 40.0%
CACATCCAATACTTGTGAGA+AGG - chr1_4:55994585-55994604 None:intergenic 40.0%
TCAAACTGGAGTAGGTATAG+AGG - chr1_4:55994877-55994896 None:intergenic 40.0%
ATAACAGATGAGGCTTCGTT+TGG - chr1_4:55994987-55995006 None:intergenic 40.0%
AAACGAAGCCTCATCTGTTA+TGG + chr1_4:55994986-55995005 Msa0171300:intron 40.0%
CTCTTCCAGCATTAAAGTGA+AGG + chr1_4:55995127-55995146 Msa0171300:CDS 40.0%
TGCATCCTTCACTTTAATGC+TGG - chr1_4:55995135-55995154 None:intergenic 40.0%
GACTGGAATAGTACATACAG+TGG + chr1_4:55995157-55995176 Msa0171300:CDS 40.0%
ACTGCACACCTTATCATTCA+AGG - chr1_4:55995328-55995347 None:intergenic 40.0%
CGAAATTTGAGTCCACTGAG+TGG + chr1_4:55984738-55984757 Msa0171300:five_prime_UTR 45.0%
CAAGCTTAACCGACTAAGAG+AGG - chr1_4:55984989-55985008 None:intergenic 45.0%
CGTCGGAAAACGAGTTTAAG+TGG + chr1_4:55985219-55985238 Msa0171300:CDS 45.0%
GAGAGGTTACCTAGGTAGTA+GGG + chr1_4:55985785-55985804 Msa0171300:intron 45.0%
ACCTAGGTAGTAGGGTTTAG+GGG + chr1_4:55985793-55985812 Msa0171300:intron 45.0%
! TCACCGCTATTTCAGTGGTA+TGG + chr1_4:55985990-55986009 Msa0171300:intron 45.0%
!!! CAGCATATTGGCTTTTGTCG+TGG + chr1_4:55986021-55986040 Msa0171300:intron 45.0%
!! GCTGTTTTCATAAGCTGTCC+TGG + chr1_4:55986558-55986577 Msa0171300:intron 45.0%
GGTCGCATGAGCTAAATCAT+GGG + chr1_4:55986729-55986748 Msa0171300:intron 45.0%
!!! ACACCGATTTGGCTTTTCGT+AGG - chr1_4:55987002-55987021 None:intergenic 45.0%
CTTGACTCTCTATGACCCAA+AGG + chr1_4:55987151-55987170 Msa0171300:CDS 45.0%
AGGAATCGGACCATCATATG+TGG - chr1_4:55987225-55987244 None:intergenic 45.0%
ACATATGATGGTCCGATTCC+TGG + chr1_4:55987224-55987243 Msa0171300:CDS 45.0%
GTTGCTTAACATGTGCCCTA+AGG + chr1_4:55987737-55987756 Msa0171300:intron 45.0%
ACCCACAGAGATGCAAAAGA+GGG - chr1_4:55987896-55987915 None:intergenic 45.0%
CGCTGTACAATCTGGTACAT+TGG + chr1_4:55987938-55987957 Msa0171300:CDS 45.0%
CACTGCCTTGACAATATTCG+TGG + chr1_4:55988068-55988087 Msa0171300:CDS 45.0%
TGCCTTGACAATATTCGTGG+TGG + chr1_4:55988071-55988090 Msa0171300:CDS 45.0%
CACCACCACGAATATTGTCA+AGG - chr1_4:55988076-55988095 None:intergenic 45.0%
CTTGACAATATTCGTGGTGG+TGG + chr1_4:55988074-55988093 Msa0171300:CDS 45.0%
!! GGTGGTGGAATATTTGCCAT+AGG + chr1_4:55988089-55988108 Msa0171300:CDS 45.0%
ATTTGCCATAGGGGAATTGG+TGG + chr1_4:55988100-55988119 Msa0171300:CDS 45.0%
GATGGGAATCCTCATAGGTA+TGG + chr1_4:55988603-55988622 Msa0171300:intron 45.0%
AACTTGCAGCCATACCTATG+AGG - chr1_4:55988615-55988634 None:intergenic 45.0%
GTATGGCTGCAAGTTAACCT+TGG + chr1_4:55988620-55988639 Msa0171300:intron 45.0%
TTAGGTAAAGCCGTCTTCAG+AGG + chr1_4:55988656-55988675 Msa0171300:intron 45.0%
! TAGAACTACGCCTCTGAAGA+CGG - chr1_4:55988669-55988688 None:intergenic 45.0%
! TCTTCAGAGGCGTAGTTCTA+GGG + chr1_4:55988669-55988688 Msa0171300:intron 45.0%
GTTCATACCCTTGACATTGC+AGG + chr1_4:55988691-55988710 Msa0171300:intron 45.0%
!! AAAACTCTAGAGCCCTACAG+TGG - chr1_4:55988755-55988774 None:intergenic 45.0%
AATGAAAGGTGACCAGACTC+AGG + chr1_4:55988995-55989014 Msa0171300:intron 45.0%
GGAATATACCTCCAACTCCT+TGG - chr1_4:55989078-55989097 None:intergenic 45.0%
GTGGGAGAGACAATGTTAAG+TGG + chr1_4:55989135-55989154 Msa0171300:intron 45.0%
GAAAGGAGGTGGTTATGAAG+AGG + chr1_4:55989188-55989207 Msa0171300:intron 45.0%
AGAGGCCAGAGACATGAATA+TGG + chr1_4:55989206-55989225 Msa0171300:intron 45.0%
GAAGGGCAATTAAGTCCCAT+AGG + chr1_4:55989842-55989861 Msa0171300:intron 45.0%
TGATGTTCTACAGCTTCCCT+CGG + chr1_4:55990042-55990061 Msa0171300:CDS 45.0%
AAGGGGACAGTGATTGATAG+TGG + chr1_4:55990088-55990107 Msa0171300:CDS 45.0%
ATGGCGTACTTTCCAGCATA+GGG - chr1_4:55990298-55990317 None:intergenic 45.0%
AATGGCGTACTTTCCAGCAT+AGG - chr1_4:55990299-55990318 None:intergenic 45.0%
! GCTAATCATTTTCCTCCAGC+AGG - chr1_4:55990602-55990621 None:intergenic 45.0%
GCACTTGATTCTCTGGCATA+TGG + chr1_4:55991129-55991148 Msa0171300:intron 45.0%
!! AACCTTTGCAGTGTTGATGG+TGG + chr1_4:55991179-55991198 Msa0171300:intron 45.0%
ATCCACCATCAACACTGCAA+AGG - chr1_4:55991184-55991203 None:intergenic 45.0%
AGTGTGACCCAAACTAAGGA+TGG + chr1_4:55991721-55991740 Msa0171300:CDS 45.0%
GACCCAAACTAAGGATGGAA+AGG + chr1_4:55991726-55991745 Msa0171300:CDS 45.0%
GGAAAGGACATGACACTTCT+TGG + chr1_4:55991742-55991761 Msa0171300:CDS 45.0%
AAGGACATGACACTTCTTGG+AGG + chr1_4:55991745-55991764 Msa0171300:CDS 45.0%
TACGCGTTCAGTCTTCGTTA+AGG + chr1_4:55992012-55992031 Msa0171300:intron 45.0%
TCACGTGCCAAATAGACGTT+CGG - chr1_4:55992203-55992222 None:intergenic 45.0%
! TCGCCTTCTCCGATTTTTGT+TGG + chr1_4:55992276-55992295 Msa0171300:intron 45.0%
! CGCCTTCTCCGATTTTTGTT+GGG + chr1_4:55992277-55992296 Msa0171300:intron 45.0%
GTCCCAACAAAAATCGGAGA+AGG - chr1_4:55992282-55992301 None:intergenic 45.0%
! GCTCATTGCTGCAGTGTTTT+TGG + chr1_4:55992384-55992403 Msa0171300:intron 45.0%
TATCGCATCACAAGGTCTAC+TGG + chr1_4:55992421-55992440 Msa0171300:intron 45.0%
CACAACATCACCCTTGCTAA+TGG + chr1_4:55992670-55992689 Msa0171300:intron 45.0%
TGCCTTGGAACCATTAGCAA+GGG - chr1_4:55992683-55992702 None:intergenic 45.0%
ATCGTCACCAAATCTTTGCG+GGG - chr1_4:55992847-55992866 None:intergenic 45.0%
CTGGACGAAAGATACGAAGT+TGG + chr1_4:55992985-55993004 Msa0171300:intron 45.0%
ACGAAAGATACGAAGTTGGC+TGG + chr1_4:55992989-55993008 Msa0171300:intron 45.0%
CGAGCACAAAAGCTCACATA+TGG + chr1_4:55993074-55993093 Msa0171300:intron 45.0%
GAGTACAAAGGCTGAATACC+AGG - chr1_4:55993112-55993131 None:intergenic 45.0%
TAATACACGGCCGAGTACAA+AGG - chr1_4:55993124-55993143 None:intergenic 45.0%
CAGTAGCTTTCAGGCATAGA+CGG - chr1_4:55993215-55993234 None:intergenic 45.0%
CCAATTGAGCAGTAGCTTTC+AGG - chr1_4:55993224-55993243 None:intergenic 45.0%
CCTGAAAGCTACTGCTCAAT+TGG + chr1_4:55993221-55993240 Msa0171300:intron 45.0%
CTACAAAGGATCACCTCGAA+AGG - chr1_4:55993310-55993329 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr1_4:55993353-55993372 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr1_4:55993350-55993369 Msa0171300:intron 45.0%
!! TTGCCTTGTGTTGGCTTTGA+GGG - chr1_4:55993445-55993464 None:intergenic 45.0%
!! ATTGCCTTGTGTTGGCTTTG+AGG - chr1_4:55993446-55993465 None:intergenic 45.0%
AGCCAACACAAGGCAATTAG+GGG + chr1_4:55993449-55993468 Msa0171300:intron 45.0%
GGGCAGATCTCAATAAAGGT+GGG + chr1_4:55993469-55993488 Msa0171300:intron 45.0%
AACACCCATCTCATCAGTCA+TGG + chr1_4:55993879-55993898 Msa0171300:intron 45.0%
!! AGGAAGTATCCCATTCAGTG+TGG - chr1_4:55993912-55993931 None:intergenic 45.0%
!! GAAGATGATGGAGCCAGATT+AGG + chr1_4:55994081-55994100 Msa0171300:intron 45.0%
!! AGATGATGGAGCCAGATTAG+GGG + chr1_4:55994083-55994102 Msa0171300:intron 45.0%
GTCACTTATGAATGACGGTG+TGG - chr1_4:55994144-55994163 None:intergenic 45.0%
TACAGTACCATGATTGAGGG+GGG - chr1_4:55994277-55994296 None:intergenic 45.0%
TCAGAGAGAGAGAATGCTCA+AGG - chr1_4:55994360-55994379 None:intergenic 45.0%
TAGAGGAGGAATGGTGAAGT+TGG - chr1_4:55994860-55994879 None:intergenic 45.0%
GAGTAGGTATAGAGGAGGAA+TGG - chr1_4:55994869-55994888 None:intergenic 45.0%
AACTGGAGTAGGTATAGAGG+AGG - chr1_4:55994874-55994893 None:intergenic 45.0%
AAAGTGAAGGATGCAACGAC+TGG + chr1_4:55995140-55995159 Msa0171300:CDS 45.0%
GAATGATAAGGTGTGCAGTG+TGG + chr1_4:55995329-55995348 Msa0171300:three_prime_UTR 45.0%
!! AAAATACAAAAATTAAATAA+GGG - chr1_4:55987103-55987122 None:intergenic 5.0%
!! ATATATATATATATATATTG+AGG - chr1_4:55989467-55989486 None:intergenic 5.0%
CATCACGATCATCTTCGTCG+TGG + chr1_4:55985249-55985268 Msa0171300:CDS 50.0%
! GAGACTCACCCAGTTCTAGT+AGG - chr1_4:55985321-55985340 None:intergenic 50.0%
AAAGGCAGTTTAGCCACGAG+AGG + chr1_4:55985768-55985787 Msa0171300:intron 50.0%
TTAGCCACGAGAGGTTACCT+AGG + chr1_4:55985777-55985796 Msa0171300:intron 50.0%
ACTACCTAGGTAACCTCTCG+TGG - chr1_4:55985784-55985803 None:intergenic 50.0%
CGAGAGGTTACCTAGGTAGT+AGG + chr1_4:55985784-55985803 Msa0171300:intron 50.0%
ACCCCTAAACCCTACTACCT+AGG - chr1_4:55985797-55985816 None:intergenic 50.0%
AAGCTGTCCTGGAGAGCTTA+TGG + chr1_4:55986569-55986588 Msa0171300:intron 50.0%
GGGTCGCATGAGCTAAATCA+TGG + chr1_4:55986728-55986747 Msa0171300:intron 50.0%
TGGTCCGATTCCTGGTTGTA+AGG + chr1_4:55987232-55987251 Msa0171300:CDS 50.0%
TCCGATTCCTGGTTGTAAGG+CGG + chr1_4:55987235-55987254 Msa0171300:CDS 50.0%
TCCGCCTTACAACCAGGAAT+CGG - chr1_4:55987239-55987258 None:intergenic 50.0%
! GGAGATGGAAGTGCAACTAC+TGG + chr1_4:55987287-55987306 Msa0171300:CDS 50.0%
!!! TGCTATTTTGCGGTGCGGTA+TGG - chr1_4:55987361-55987380 None:intergenic 50.0%
!!! GATGCTGCTATTTTGCGGTG+CGG - chr1_4:55987366-55987385 None:intergenic 50.0%
! TCCCCTCTTTTGCATCTCTG+TGG + chr1_4:55987891-55987910 Msa0171300:intron 50.0%
CCCACAGAGATGCAAAAGAG+GGG - chr1_4:55987895-55987914 None:intergenic 50.0%
! CCCCTCTTTTGCATCTCTGT+GGG + chr1_4:55987892-55987911 Msa0171300:intron 50.0%
GACCCACAGAGATGCAAAAG+AGG - chr1_4:55987897-55987916 None:intergenic 50.0%
! TCTTTGCTTGCTGACAGGTG+TGG + chr1_4:55987915-55987934 Msa0171300:intron 50.0%
TCTTCCGAAGAAGCCCTTGA+TGG + chr1_4:55987966-55987985 Msa0171300:CDS 50.0%
!! ACAGCTTGCTGCATCTCGAA+AGG + chr1_4:55988028-55988047 Msa0171300:CDS 50.0%
TGGTTCCACCAATTCCCCTA+TGG - chr1_4:55988108-55988127 None:intergenic 50.0%
GTGTCAACAAGCTTTGCCCT+TGG - chr1_4:55988221-55988240 None:intergenic 50.0%
ACAACTTTACCGTTGCGCCA+AGG - chr1_4:55988407-55988426 None:intergenic 50.0%
CTAAAGCTCTCGCATACGCA+AGG - chr1_4:55988537-55988556 None:intergenic 50.0%
! ATGCGAGAGCTTTAGTGCAC+CGG + chr1_4:55988542-55988561 Msa0171300:intron 50.0%
! GTCTTCAGAGGCGTAGTTCT+AGG + chr1_4:55988668-55988687 Msa0171300:intron 50.0%
CTGTATTGAGCTCCTGAGTC+TGG - chr1_4:55989010-55989029 None:intergenic 50.0%
GGCCAGAGACATGAATATGG+AGG + chr1_4:55989209-55989228 Msa0171300:intron 50.0%
ATGGGTATATGCGCTGGGTT+TGG + chr1_4:55989253-55989272 Msa0171300:intron 50.0%
TGGGTATATGCGCTGGGTTT+GGG + chr1_4:55989254-55989273 Msa0171300:intron 50.0%
TGTCACACCCTTGTTGGATC+TGG + chr1_4:55989703-55989722 Msa0171300:intron 50.0%
AAGCGCACCAGATCCAACAA+GGG - chr1_4:55989713-55989732 None:intergenic 50.0%
TAAGCGCACCAGATCCAACA+AGG - chr1_4:55989714-55989733 None:intergenic 50.0%
ACACAAAACACCTGGGACCT+GGG - chr1_4:55991419-55991438 None:intergenic 50.0%
TAGGCTGGTGTCCGATGTAT+TGG + chr1_4:55991688-55991707 Msa0171300:intron 50.0%
!! GGTATCTCAGTTGGTGATGG+CGG - chr1_4:55992097-55992116 None:intergenic 50.0%
!! TGAAAGGGTGTTCAACGGCA+GGG - chr1_4:55992166-55992185 None:intergenic 50.0%
!! ATGAAAGGGTGTTCAACGGC+AGG - chr1_4:55992167-55992186 None:intergenic 50.0%
!! GCGCATGAAAGGGTGTTCAA+CGG - chr1_4:55992171-55992190 None:intergenic 50.0%
AATAGACGTTCGGAGTGTGG+AGG - chr1_4:55992193-55992212 None:intergenic 50.0%
CCAAATAGACGTTCGGAGTG+TGG - chr1_4:55992196-55992215 None:intergenic 50.0%
CCACACTCCGAACGTCTATT+TGG + chr1_4:55992193-55992212 Msa0171300:intron 50.0%
TTGGGACAACTTCCAGTGTG+TGG + chr1_4:55992295-55992314 Msa0171300:intron 50.0%
TGGGACAACTTCCAGTGTGT+GGG + chr1_4:55992296-55992315 Msa0171300:intron 50.0%
CCAAAACACGTGTCAAGCGT+GGG - chr1_4:55992323-55992342 None:intergenic 50.0%
TCCAAAACACGTGTCAAGCG+TGG - chr1_4:55992324-55992343 None:intergenic 50.0%
!! ACGCTTGACACGTGTTTTGG+AGG + chr1_4:55992323-55992342 Msa0171300:intron 50.0%
GTCACTGGTATCGCATCACA+AGG + chr1_4:55992413-55992432 Msa0171300:intron 50.0%
TTGTGTCGCCACACTGTTGT+TGG + chr1_4:55992481-55992500 Msa0171300:intron 50.0%
ATCTCCAGCCACGGAATTGT+GGG + chr1_4:55992563-55992582 Msa0171300:intron 50.0%
TCCATGATCCCACAATTCCG+TGG - chr1_4:55992574-55992593 None:intergenic 50.0%
CACCCTTGCTAATGGTTCCA+AGG + chr1_4:55992678-55992697 Msa0171300:intron 50.0%
GTGCCTTGGAACCATTAGCA+AGG - chr1_4:55992684-55992703 None:intergenic 50.0%
GGTTCCAAGGCACAAGTTAC+TGG + chr1_4:55992691-55992710 Msa0171300:intron 50.0%
TTGAGGACCCCGCAAAGATT+TGG + chr1_4:55992837-55992856 Msa0171300:intron 50.0%
ATATGGCGTGAGCCTTAACC+TGG + chr1_4:55993091-55993110 Msa0171300:intron 50.0%
AGGAGCTCGTTTACACCGAT+AGG - chr1_4:55993290-55993309 None:intergenic 50.0%
GTGTAAACGAGCTCCTTTCG+AGG + chr1_4:55993294-55993313 Msa0171300:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr1_4:55993355-55993374 Msa0171300:intron 50.0%
! GGGTGGATTTAGTCCCAGAT+TGG - chr1_4:55993423-55993442 None:intergenic 50.0%
!! TGCCTTGTGTTGGCTTTGAG+GGG - chr1_4:55993444-55993463 None:intergenic 50.0%
TGCCCCTAATTGCCTTGTGT+TGG - chr1_4:55993454-55993473 None:intergenic 50.0%
GGGGCAGATCTCAATAAAGG+TGG + chr1_4:55993468-55993487 Msa0171300:intron 50.0%
! AAGGGGGTATACACAGCCTA+TGG - chr1_4:55993802-55993821 None:intergenic 50.0%
CTGTGTATACCCCCTTGCTT+TGG + chr1_4:55993806-55993825 Msa0171300:intron 50.0%
TGTATACCCCCTTGCTTTGG+CGG + chr1_4:55993809-55993828 Msa0171300:intron 50.0%
TTGAAAGCCCGCCAAAGCAA+GGG - chr1_4:55993820-55993839 None:intergenic 50.0%
ATTGAAAGCCCGCCAAAGCA+AGG - chr1_4:55993821-55993840 None:intergenic 50.0%
!! TGCTTTGGCGGGCTTTCAAT+CGG + chr1_4:55993821-55993840 Msa0171300:intron 50.0%
GTGGGAGATAATCGACTGCA+TGG + chr1_4:55993985-55994004 Msa0171300:intron 50.0%
AAGCGCTTCTACCCCTAATC+TGG - chr1_4:55994097-55994116 None:intergenic 50.0%
CAAAGGGGAGAAGATTCTGG+TGG + chr1_4:55994176-55994195 Msa0171300:intron 50.0%
! ACCATGATTGAGGGGGGTAT+GGG - chr1_4:55994271-55994290 None:intergenic 50.0%
TACCATGATTGAGGGGGGTA+TGG - chr1_4:55994272-55994291 None:intergenic 50.0%
GATGGCTGCCATAACAGATG+AGG - chr1_4:55994997-55995016 None:intergenic 50.0%
! GGTGTGCAGTGTGGTTGATA+TGG + chr1_4:55995338-55995357 Msa0171300:three_prime_UTR 50.0%
!!! TGCTGCTTTTGCCCACTCAG+TGG - chr1_4:55984753-55984772 None:intergenic 55.0%
! TGGTGTTTCAGGTGCAGCGT+CGG + chr1_4:55985202-55985221 Msa0171300:CDS 55.0%
! TGGGCTTGGCTCTCCAAAGA+AGG + chr1_4:55986908-55986927 Msa0171300:CDS 55.0%
GGTGTTTCCGCCTTACAACC+AGG - chr1_4:55987245-55987264 None:intergenic 55.0%
! GTGGGTCTTTGCTTGCTGAC+AGG + chr1_4:55987910-55987929 Msa0171300:intron 55.0%
AGGTGTGGCGCTGTACAATC+TGG + chr1_4:55987930-55987949 Msa0171300:intron 55.0%
TTTGGGAAGCCTTGGCGCAA+CGG + chr1_4:55988395-55988414 Msa0171300:intron 55.0%
CTCTCGCATACGCAAGGTCT+GGG - chr1_4:55988531-55988550 None:intergenic 55.0%
! TGCGAGAGCTTTAGTGCACC+GGG + chr1_4:55988543-55988562 Msa0171300:intron 55.0%
!! CTCTAGAGCCCTACAGTGGT+TGG - chr1_4:55988751-55988770 None:intergenic 55.0%
CTGGAAATCGAGTAGGGCCT+AGG + chr1_4:55988965-55988984 Msa0171300:intron 55.0%
TATATGCGCTGGGTTTGGGC+AGG + chr1_4:55989258-55989277 Msa0171300:intron 55.0%
ACCTGGGTACAGTTCGGAGA+GGG - chr1_4:55991403-55991422 None:intergenic 55.0%
CACACAAAACACCTGGGACC+TGG - chr1_4:55991420-55991439 None:intergenic 55.0%
TACATCGGACACCAGCCTAG+AGG - chr1_4:55991687-55991706 None:intergenic 55.0%
! CTGGTGTCCGATGTATTGGC+TGG + chr1_4:55991692-55991711 Msa0171300:CDS 55.0%
!! GGCGGTATCTCAGTTGGTGA+TGG - chr1_4:55992100-55992119 None:intergenic 55.0%
TCGTGTGGCGGTATCTCAGT+TGG - chr1_4:55992106-55992125 None:intergenic 55.0%
GATGGCAGATCAGCAGTGTC+CGG - chr1_4:55992135-55992154 None:intergenic 55.0%
AACGGCAGGGTTTCAGACGA+TGG - chr1_4:55992153-55992172 None:intergenic 55.0%
! GAGTGTGGAGGCGCATGAAA+GGG - chr1_4:55992181-55992200 None:intergenic 55.0%
GTCGCAAATGTACGCTCGGA+AGG - chr1_4:55992237-55992256 None:intergenic 55.0%
! CCCACGCTTGACACGTGTTT+TGG + chr1_4:55992320-55992339 Msa0171300:intron 55.0%
CATCTCCAGCCACGGAATTG+TGG + chr1_4:55992562-55992581 Msa0171300:intron 55.0%
TGATCCCACAATTCCGTGGC+TGG - chr1_4:55992570-55992589 None:intergenic 55.0%
GCCACGGAATTGTGGGATCA+TGG + chr1_4:55992570-55992589 Msa0171300:intron 55.0%
GGTGCTTCGGATCATGTCGT+TGG + chr1_4:55992603-55992622 Msa0171300:intron 55.0%
! AGGCATAGACGGCTGACTTC+AGG - chr1_4:55993204-55993223 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr1_4:55993363-55993382 None:intergenic 55.0%
!! TTGTGTTGGCTTTGAGGGGG+TGG - chr1_4:55993440-55993459 None:intergenic 55.0%
ACCCCCTCAAAGCCAACACA+AGG + chr1_4:55993439-55993458 Msa0171300:intron 55.0%
!! GCCTTGTGTTGGCTTTGAGG+GGG - chr1_4:55993443-55993462 None:intergenic 55.0%
GTATACCCCCTTGCTTTGGC+GGG + chr1_4:55993810-55993829 Msa0171300:intron 55.0%
TGAAAGCCCGCCAAAGCAAG+GGG - chr1_4:55993819-55993838 None:intergenic 55.0%
GGGCTTTCAATCGGTCCACA+TGG + chr1_4:55993830-55993849 Msa0171300:intron 55.0%
GATAGACACTGGTGGCCATG+TGG - chr1_4:55993848-55993867 None:intergenic 55.0%
ACCCATACCCCCCTCAATCA+TGG + chr1_4:55994267-55994286 Msa0171300:intron 55.0%
GCATACGCAAGGTCTGGGAG+GGG - chr1_4:55988526-55988545 None:intergenic 60.0%
CGCATACGCAAGGTCTGGGA+GGG - chr1_4:55988527-55988546 None:intergenic 60.0%
TCGCATACGCAAGGTCTGGG+AGG - chr1_4:55988528-55988547 None:intergenic 60.0%
GCTCTCGCATACGCAAGGTC+TGG - chr1_4:55988532-55988551 None:intergenic 60.0%
GCAGTTAAGCTGTGGCCCCA+AGG + chr1_4:55989058-55989077 Msa0171300:intron 60.0%
AAGCTGTGGCCCCAAGGAGT+TGG + chr1_4:55989064-55989083 Msa0171300:intron 60.0%
GCTGGGTTTGGGCAGGAAGT+AGG + chr1_4:55989265-55989284 Msa0171300:intron 60.0%
TCCCTCTCCGAACTGTACCC+AGG + chr1_4:55991399-55991418 Msa0171300:intron 60.0%
GACCTGGGTACAGTTCGGAG+AGG - chr1_4:55991404-55991423 None:intergenic 60.0%
CCTGGGACCTGGGTACAGTT+CGG - chr1_4:55991409-55991428 None:intergenic 60.0%
TACCGCCACACGACTGTGAC+CGG + chr1_4:55992113-55992132 Msa0171300:intron 60.0%
AGTGTCCGGTCACAGTCGTG+TGG - chr1_4:55992121-55992140 None:intergenic 60.0%
! GGAGTGTGGAGGCGCATGAA+AGG - chr1_4:55992182-55992201 None:intergenic 60.0%
CGGCGTCGCAAATGTACGCT+CGG - chr1_4:55992241-55992260 None:intergenic 60.0%
GGCGAGCCAGCTGGAACAAA+CGG - chr1_4:55992261-55992280 None:intergenic 60.0%
GAAAGCCCGCCAAAGCAAGG+GGG - chr1_4:55993818-55993837 None:intergenic 60.0%
CTGGGAGGGGTCCCACCAAT+TGG - chr1_4:55988513-55988532 None:intergenic 65.0%
TAAGCCACGGCCCCAAGCCA+TGG + chr1_4:55988872-55988891 Msa0171300:intron 65.0%
CTGTGGCCCCAAGGAGTTGG+AGG + chr1_4:55989067-55989086 Msa0171300:intron 65.0%
CCGAACTGTACCCAGGTCCC+AGG + chr1_4:55991406-55991425 Msa0171300:intron 65.0%
GTCCGGTCACAGTCGTGTGG+CGG - chr1_4:55992118-55992137 None:intergenic 65.0%
GCGACGCCGTTTGTTCCAGC+TGG + chr1_4:55992252-55992271 Msa0171300:intron 65.0%
ATCGGAGAAGGCGAGCCAGC+TGG - chr1_4:55992270-55992289 None:intergenic 65.0%
CAAGCGTGGGACCCACACAC+TGG - chr1_4:55992310-55992329 None:intergenic 65.0%
CCAACACACCCCCTCACGCT+CGG + chr1_4:55993496-55993515 Msa0171300:intron 65.0%
CAACACACCCCCTCACGCTC+GGG + chr1_4:55993497-55993516 Msa0171300:intron 65.0%
AACACACCCCCTCACGCTCG+GGG + chr1_4:55993498-55993517 Msa0171300:intron 65.0%
AAATCCCGCCCCGAGCGTGA+GGG - chr1_4:55993509-55993528 None:intergenic 65.0%
! CCATCCATGGCTTGGGGCCG+TGG - chr1_4:55988879-55988898 None:intergenic 70.0%
CCACGGCCCCAAGCCATGGA+TGG + chr1_4:55988876-55988895 Msa0171300:intron 70.0%
! CCGAGCGTGAGGGGGTGTGT+TGG - chr1_4:55993499-55993518 None:intergenic 70.0%
AATCCCGCCCCGAGCGTGAG+GGG - chr1_4:55993508-55993527 None:intergenic 70.0%
GAAATCCCGCCCCGAGCGTG+AGG - chr1_4:55993510-55993529 None:intergenic 70.0%
ACACCCCCTCACGCTCGGGG+CGG + chr1_4:55993501-55993520 Msa0171300:intron 75.0%
ATCCCGCCCCGAGCGTGAGG+GGG - chr1_4:55993507-55993526 None:intergenic 75.0%
! CACCCCCTCACGCTCGGGGC+GGG + chr1_4:55993502-55993521 Msa0171300:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 55984699 55995474 55984699 ID=Msa0171300;Name=Msa0171300
chr1_4 mRNA 55984699 55995474 55984699 ID=Msa0171300-mRNA-1;Parent=Msa0171300;Name=Msa0171300-mRNA-1;_AED=0.13;_eAED=0.13;_QI=430|1|1|1|0.88|0.9|10|197|479
chr1_4 exon 55984699 55985331 55984699 ID=Msa0171300-mRNA-1:exon:16847;Parent=Msa0171300-mRNA-1
chr1_4 exon 55986890 55987019 55986890 ID=Msa0171300-mRNA-1:exon:16848;Parent=Msa0171300-mRNA-1
chr1_4 exon 55987146 55987393 55987146 ID=Msa0171300-mRNA-1:exon:16849;Parent=Msa0171300-mRNA-1
chr1_4 exon 55987932 55988159 55987932 ID=Msa0171300-mRNA-1:exon:16850;Parent=Msa0171300-mRNA-1
chr1_4 exon 55990000 55990162 55990000 ID=Msa0171300-mRNA-1:exon:16851;Parent=Msa0171300-mRNA-1
chr1_4 exon 55990235 55990308 55990235 ID=Msa0171300-mRNA-1:exon:16852;Parent=Msa0171300-mRNA-1
chr1_4 exon 55991190 55991283 55991190 ID=Msa0171300-mRNA-1:exon:16853;Parent=Msa0171300-mRNA-1
chr1_4 exon 55991691 55991766 55991691 ID=Msa0171300-mRNA-1:exon:16854;Parent=Msa0171300-mRNA-1
chr1_4 exon 55994644 55994715 55994644 ID=Msa0171300-mRNA-1:exon:16855;Parent=Msa0171300-mRNA-1
chr1_4 exon 55995126 55995474 55995126 ID=Msa0171300-mRNA-1:exon:16856;Parent=Msa0171300-mRNA-1
chr1_4 five_prime_UTR 55984699 55985128 55984699 ID=Msa0171300-mRNA-1:five_prime_utr;Parent=Msa0171300-mRNA-1
chr1_4 CDS 55985129 55985331 55985129 ID=Msa0171300-mRNA-1:cds;Parent=Msa0171300-mRNA-1
chr1_4 CDS 55986890 55987019 55986890 ID=Msa0171300-mRNA-1:cds;Parent=Msa0171300-mRNA-1
chr1_4 CDS 55987146 55987393 55987146 ID=Msa0171300-mRNA-1:cds;Parent=Msa0171300-mRNA-1
chr1_4 CDS 55987932 55988159 55987932 ID=Msa0171300-mRNA-1:cds;Parent=Msa0171300-mRNA-1
chr1_4 CDS 55990000 55990162 55990000 ID=Msa0171300-mRNA-1:cds;Parent=Msa0171300-mRNA-1
chr1_4 CDS 55990235 55990308 55990235 ID=Msa0171300-mRNA-1:cds;Parent=Msa0171300-mRNA-1
chr1_4 CDS 55991190 55991283 55991190 ID=Msa0171300-mRNA-1:cds;Parent=Msa0171300-mRNA-1
chr1_4 CDS 55991691 55991766 55991691 ID=Msa0171300-mRNA-1:cds;Parent=Msa0171300-mRNA-1
chr1_4 CDS 55994644 55994715 55994644 ID=Msa0171300-mRNA-1:cds;Parent=Msa0171300-mRNA-1
chr1_4 CDS 55995126 55995277 55995126 ID=Msa0171300-mRNA-1:cds;Parent=Msa0171300-mRNA-1
chr1_4 three_prime_UTR 55995278 55995474 55995278 ID=Msa0171300-mRNA-1:three_prime_utr;Parent=Msa0171300-mRNA-1
Gene Sequence

>Msa0171300

ATGATGGATCTGAGATATTTATTATTGATTATACTAGCTTTGGAAATTTTGTGTGTTGCGAATGGAGATAATTTGGTGTTTCAGGTGCAGCGTCGGAAAACGAGTTTAAGTGGAATTAAACATCACGATCATCTTCGTCGTGGTAGATTTCTTTCATCCGTTGATTTCAATCTTGGTGGTAATGGTCTTCCTACTAGAACTGGGTTGTATTTCACTAAACTTGGGCTTGGCTCTCCAAAGAAGGACTACTATGTCCAAGTTGATACAGGAAGTGATATTCTGTGGGTGAATTGTGTTGAGTGCTCAAGATGTCCTACGAAAAGCCAAATCGGTATGGACTTGACTCTCTATGACCCAAAGGGATCTCATACTTCAGAGTTAATTTCTTGTGATCATGAGTTTTGCTCTTCCACATATGATGGTCCGATTCCTGGTTGTAAGGCGGAAACACCCTGCCCCTATAGCATAACTTATGGAGATGGAAGTGCAACTACTGGATACTATGTCAGGGACTATCTTACTTTTGACCGGATCAACGGAAATCTCCATACCGCACCGCAAAATAGCAGCATCATTTTTGGGTGTGGCGCTGTACAATCTGGTACATTGGGTGCATCTTCCGAAGAAGCCCTTGATGGAATAATTGGTTTTGGACAGGAAAATTCTTCTGTGCTTTCACAGCTTGCTGCATCTCGAAAGGTGAAAAAAATATTTTCACACTGCCTTGACAATATTCGTGGTGGTGGAATATTTGCCATAGGGGAATTGGTGGAACCAAAAGTCAGAACAACTCCACTGGTACCAAATATGGCACATTACAATGTGGTTTTGAAGAATATTGAAGTTGATGGTGATGTTCTACAGCTTCCCTCGGATATATTTGATTCTGGAAATGGGAAGGGGACAGTGATTGATAGTGGAACAACCTTGGCTTATCTTCCTGTCATAGTTTATGACCAACTAATTCCAAAGATTTTTGCCCGTCAGCCTGAATTGAAATTAGCTCGCATTGAGGAACAATTTAAATGTTTTCCCTATGCTGGAAATGTTGATGGTGGATTTCCAGTTGTCAAACTACATTTTGAGGGTTCTCTTTCTCTGACAGTTTATCCTCATGACTATCTGTTCCAATATAAGGTGGCTGGTGTCCGATGTATTGGCTGGCAGAAAAGTGTGACCCAAACTAAGGATGGAAAGGACATGACACTTCTTGGAGATTTGGTGCTTTCAAACAAACTTGTCTTGTACGATCTTGAGAATATGGCCATTGGATGGGCTGAATACAATTGCTCTTCCAGCATTAAAGTGAAGGATGCAACGACTGGAATAGTACATACAGTGGGCGCACACAATATTTCTTCAGCTTCTACCTTTTTAATTGGTAGAATATTGTCATTCTTTTTGTTGCTAATTGCCATGTTAAACTATTTTTATAACTAG
Protein sequence

>Msa0171300

MMDLRYLLLIILALEILCVANGDNLVFQVQRRKTSLSGIKHHDHLRRGRFLSSVDFNLGGNGLPTRTGLYFTKLGLGSPKKDYYVQVDTGSDILWVNCVECSRCPTKSQIGMDLTLYDPKGSHTSELISCDHEFCSSTYDGPIPGCKAETPCPYSITYGDGSATTGYYVRDYLTFDRINGNLHTAPQNSSIIFGCGAVQSGTLGASSEEALDGIIGFGQENSSVLSQLAASRKVKKIFSHCLDNIRGGGIFAIGELVEPKVRTTPLVPNMAHYNVVLKNIEVDGDVLQLPSDIFDSGNGKGTVIDSGTTLAYLPVIVYDQLIPKIFARQPELKLARIEEQFKCFPYAGNVDGGFPVVKLHFEGSLSLTVYPHDYLFQYKVAGVRCIGWQKSVTQTKDGKDMTLLGDLVLSNKLVLYDLENMAIGWAEYNCSSSIKVKDATTGIVHTVGAHNISSASTFLIGRILSFFLLLIAMLNYFYN*