Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383000 | XP_003624928.1 | 96.644 | 447 | 14 | 1 | 1 | 446 | 1 | 447 | 0.0 | 888 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383000 | sp|Q9FHK9|MD26B_ARATH | 46.868 | 463 | 194 | 11 | 6 | 446 | 4 | 436 | 2.35e-119 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383000 | G7L5V2 | 96.644 | 447 | 14 | 1 | 1 | 446 | 1 | 447 | 0.0 | 888 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1383000 | TR | IWS1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076640 | Msa1383000 | 0.813185 | 2.908248e-51 | -8.615850e-47 |
| Msa0707860 | Msa1383000 | -0.801124 | 1.043921e-48 | -8.615850e-47 |
| Msa0826450 | Msa1383000 | 0.800084 | 1.701323e-48 | -8.615850e-47 |
| Msa0145430 | Msa1383000 | 0.800406 | 1.462769e-48 | -8.615850e-47 |
| Msa0186400 | Msa1383000 | -0.816248 | 6.098569e-52 | -8.615850e-47 |
| Msa0224210 | Msa1383000 | 0.827124 | 1.860333e-54 | -8.615850e-47 |
| Msa0390790 | Msa1383000 | 0.832939 | 7.100140e-56 | -8.615850e-47 |
| Msa1001120 | Msa1383000 | 0.808258 | 3.382534e-50 | -8.615850e-47 |
| Msa1071590 | Msa1383000 | 0.984063 | 1.752727e-159 | -8.615850e-47 |
| Msa0340370 | Msa1383000 | 0.811959 | 5.392038e-51 | -8.615850e-47 |
| Msa1221270 | Msa1383000 | 0.807335 | 5.315322e-50 | -8.615850e-47 |
| Msa0523420 | Msa1383000 | -0.824236 | 9.001934e-54 | -8.615850e-47 |
| Msa0901270 | Msa1383000 | 0.812058 | 5.131636e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383000 | MtrunA17_Chr7g0255811 | 96.622 | 444 | 14 | 1 | 4 | 446 | 1 | 444 | 0.0 | 882 |
| Msa1383000 | MtrunA17_Chr3g0129551 | 33.175 | 211 | 120 | 6 | 9 | 211 | 3 | 200 | 4.90e-23 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383000 | AT5G05140.1 | 46.868 | 463 | 194 | 11 | 6 | 446 | 4 | 436 | 2.39e-120 | 358 |
| Msa1383000 | AT3G10820.1 | 41.781 | 438 | 207 | 10 | 1 | 436 | 1 | 392 | 5.57e-89 | 276 |
| Msa1383000 | AT3G10820.2 | 41.781 | 438 | 207 | 10 | 1 | 436 | 1 | 392 | 3.30e-86 | 275 |
| Msa1383000 | AT5G09850.1 | 30.769 | 221 | 113 | 5 | 9 | 211 | 3 | 201 | 6.59e-22 | 97.1 |
| Msa1383000 | AT5G09850.4 | 30.769 | 221 | 113 | 5 | 9 | 211 | 3 | 201 | 6.59e-22 | 97.1 |
| Msa1383000 | AT5G09850.2 | 30.769 | 221 | 113 | 5 | 9 | 211 | 3 | 201 | 6.59e-22 | 97.1 |
| Msa1383000 | AT5G09850.5 | 30.769 | 221 | 113 | 5 | 9 | 211 | 3 | 201 | 6.59e-22 | 97.1 |
| Msa1383000 | AT5G09850.3 | 30.769 | 221 | 113 | 5 | 9 | 211 | 3 | 201 | 2.44e-21 | 95.1 |
Find 139 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCCAAGCTATTGAATTT+TGG | 0.116061 | tig0020557:+10066 | Msa1383000:intergenic |
| TGCTTTCGCCAAACATTTAA+TGG | 0.140548 | tig0020557:-10521 | Msa1383000:three_prime_UTR |
| TTGGAGTTCCATGGCTTAAT+TGG | 0.160863 | tig0020557:-10303 | Msa1383000:three_prime_UTR |
| CCAAAGCTGTAATTGCTAAT+AGG | 0.172892 | tig0020557:+12827 | Msa1383000:intergenic |
| CCATTGCCGATTGTGATTTC+CGG | 0.189148 | tig0020557:+10634 | Msa1383000:intergenic |
| ATAGAAATCCCAATCGTTTC+TGG | 0.189498 | tig0020557:-10259 | Msa1383000:three_prime_UTR |
| TTCAACAACAGATGGATTTC+TGG | 0.196234 | tig0020557:+11688 | Msa1383000:intergenic |
| ATTTCTATTGACAATAATTA+TGG | 0.198017 | tig0020557:+10274 | Msa1383000:intergenic |
| TCACTTGGGTCATTGAAAAT+TGG | 0.233379 | tig0020557:+13266 | Msa1383000:intergenic |
| AATTGGTTTGATTCTTCTTC+AGG | 0.261010 | tig0020557:+13283 | Msa1383000:intergenic |
| TGGGCATTGAGAGGCCTCTT+AGG | 0.273392 | tig0020557:+11040 | Msa1383000:intergenic |
| CGCTGAATGTTTGAGTTTAG+TGG | 0.274638 | tig0020557:+11115 | Msa1383000:intergenic |
| CATTGCCGATTGTGATTTCC+GGG | 0.275321 | tig0020557:+10635 | Msa1383000:intergenic |
| AATTTCAAATCCAATATTCT+TGG | 0.292669 | tig0020557:+10336 | Msa1383000:intergenic |
| ACATTTATATTACTTGCATT+AGG | 0.294733 | tig0020557:-10220 | Msa1383000:three_prime_UTR |
| GCCGAAGATGCCTCTGAAAA+TGG | 0.300933 | tig0020557:-11077 | Msa1383000:CDS |
| CATTTATATTACTTGCATTA+GGG | 0.318720 | tig0020557:-10219 | Msa1383000:three_prime_UTR |
| TCTTCTATCCATTAAATGTT+TGG | 0.322177 | tig0020557:+10513 | Msa1383000:intergenic |
| CTCTTGAAGTCTTCGCTTAG+TGG | 0.327399 | tig0020557:+10893 | Msa1383000:intergenic |
| TATGTAATAAGCAGGTTTAT+AGG | 0.329790 | tig0020557:-10121 | Msa1383000:three_prime_UTR |
| CCTATTAGCAATTACAGCTT+TGG | 0.340233 | tig0020557:-12827 | Msa1383000:CDS |
| CAAAGCTGTAATTGCTAATA+GGG | 0.344245 | tig0020557:+12828 | Msa1383000:intergenic |
| TCAGCCGCCATCGGTTTATT+AGG | 0.348688 | tig0020557:+11154 | Msa1383000:intergenic |
| TTTGAAATTTGATCCTATCT+TGG | 0.352247 | tig0020557:-10322 | Msa1383000:three_prime_UTR |
| CTCCTAGACTTAAACTCCTT+TGG | 0.357491 | tig0020557:+13040 | Msa1383000:intergenic |
| GCTTTCTTTGTTGCCCCAAC+TGG | 0.358676 | tig0020557:-11614 | Msa1383000:CDS |
| AGTTATCAACAAGCTGAAAA+TGG | 0.359783 | tig0020557:-10870 | Msa1383000:intron |
| TTGTATTGTCCTTTGCCTCT+TGG | 0.365164 | tig0020557:+10718 | Msa1383000:intergenic |
| AGGACTCCCGTCACCTCCTT+TGG | 0.378418 | tig0020557:-11645 | Msa1383000:CDS |
| TTACTTTCGTTCATCGAATT+CGG | 0.381995 | tig0020557:-13113 | Msa1383000:CDS |
| AATTTGCAGTCAACTGAGAT+TGG | 0.383050 | tig0020557:-12313 | Msa1383000:intron |
| AAACCGATGGCGGCTGATAC+TGG | 0.392097 | tig0020557:-11148 | Msa1383000:CDS |
| CGTTGGACAGACCCTTGCTT+TGG | 0.393563 | tig0020557:+10674 | Msa1383000:intergenic |
| TGTTATGCTGAATCGTTGTA+AGG | 0.399819 | tig0020557:-12990 | Msa1383000:CDS |
| GTTTCCAAAATTCAATAGCT+TGG | 0.413093 | tig0020557:-10070 | Msa1383000:three_prime_UTR |
| TTGTCACGGTTCTTGTTGAA+TGG | 0.419455 | tig0020557:+11301 | Msa1383000:intergenic |
| GTACTCAAAGTTTAAACCTT+GGG | 0.422898 | tig0020557:+10376 | Msa1383000:intergenic |
| GATTGCAGTAGGGAAGAAAA+TGG | 0.423504 | tig0020557:-12866 | Msa1383000:CDS |
| CGGAAATCACAATCGGCAAT+GGG | 0.431117 | tig0020557:-10633 | Msa1383000:CDS |
| AGAGTTCAATTGTACCAGTT+GGG | 0.432169 | tig0020557:+11600 | Msa1383000:intergenic |
| TTGGGATTGAAGATGAAGTC+AGG | 0.434760 | tig0020557:-13157 | Msa1383000:intron |
| GATCCTATCTTGGAGTTCCA+TGG | 0.440157 | tig0020557:-10312 | Msa1383000:three_prime_UTR |
| AGCTCTTGGCACTCAAACTA+AGG | 0.440911 | tig0020557:-11266 | Msa1383000:CDS |
| GTCCAAGTGTTCAGATGATT+CGG | 0.441028 | tig0020557:-10928 | Msa1383000:CDS |
| CCGTCACCTCCTTTGGATGA+AGG | 0.458747 | tig0020557:-11638 | Msa1383000:CDS |
| AAGCCATGGAACTCCAAGAT+AGG | 0.459185 | tig0020557:+10309 | Msa1383000:intergenic |
| CTGTCTTTCTTCCGTTGTCA+CGG | 0.459719 | tig0020557:+11287 | Msa1383000:intergenic |
| ATGTTTGTAGCTTCAGAAGA+AGG | 0.461419 | tig0020557:-11722 | Msa1383000:intron |
| TGAGAGTTCGTGCTAGTTGA+CGG | 0.465786 | tig0020557:+12248 | Msa1383000:intergenic |
| CGTCACCTCCTTTGGATGAA+GGG | 0.466548 | tig0020557:-11637 | Msa1383000:CDS |
| CATGTGATTATGTAATAAGC+AGG | 0.469847 | tig0020557:-10129 | Msa1383000:three_prime_UTR |
| AGCATGTTCTCTAAAGATGA+AGG | 0.472793 | tig0020557:-10559 | Msa1383000:three_prime_UTR |
| TCATCACCATTATCATCATC+AGG | 0.473283 | tig0020557:+12941 | Msa1383000:intergenic |
| GTTTGAAATGTGTATTCCGT+TGG | 0.475671 | tig0020557:+10657 | Msa1383000:intergenic |
| GGGCATTGAGAGGCCTCTTA+GGG | 0.490032 | tig0020557:+11041 | Msa1383000:intergenic |
| GAGTTTAAGTCTAGGAGAGA+TGG | 0.491402 | tig0020557:-13034 | Msa1383000:CDS |
| AACGGAAGAAAGACAGCTCT+TGG | 0.493030 | tig0020557:-11280 | Msa1383000:CDS |
| TGTACTCAAAGTTTAAACCT+TGG | 0.494198 | tig0020557:+10375 | Msa1383000:intergenic |
| TTTGTTGTCCTTGGCAGTGA+CGG | 0.495227 | tig0020557:+11213 | Msa1383000:intergenic |
| ACAGATGGATTTCTGGAATC+CGG | 0.496893 | tig0020557:+11695 | Msa1383000:intergenic |
| GCAAAGGACAATACAAGTAA+TGG | 0.500794 | tig0020557:-10711 | Msa1383000:CDS |
| CCGGAAATCACAATCGGCAA+TGG | 0.503234 | tig0020557:-10634 | Msa1383000:CDS |
| GAAAATGAAGAAGAGGAAGA+AGG | 0.503793 | tig0020557:-11668 | Msa1383000:CDS |
| TAAGATGTCCAGAAACGATT+GGG | 0.504122 | tig0020557:+10251 | Msa1383000:intergenic |
| CAAGAGAAGTTCTGTTAGAG+AGG | 0.509666 | tig0020557:-12912 | Msa1383000:CDS |
| AAGATTATACCTCATCTTCA+CGG | 0.513302 | tig0020557:+12720 | Msa1383000:intergenic |
| TGCTGCTTCTGATTGTCCAA+AGG | 0.514908 | tig0020557:-13056 | Msa1383000:CDS |
| GCTGGTCAATGCGTGGGTGA+AGG | 0.515961 | tig0020557:-11872 | Msa1383000:CDS |
| AGAGCAAGGTGGATTGCAGT+AGG | 0.520399 | tig0020557:-12877 | Msa1383000:CDS |
| TTTCTATGCTCTCAAGGAGG+GGG | 0.522651 | tig0020557:+10484 | Msa1383000:intergenic |
| GCAATCACAACTTGCTGCTG+AGG | 0.525782 | tig0020557:-12771 | Msa1383000:CDS |
| CACAATCGGCAATGGGGCAA+CGG | 0.528995 | tig0020557:-10626 | Msa1383000:CDS |
| AGCCGAATCATCTGAACACT+TGG | 0.534167 | tig0020557:+10926 | Msa1383000:intergenic |
| ATAAATGATCTTCCAAAGCA+AGG | 0.538473 | tig0020557:-10686 | Msa1383000:CDS |
| ACATCTTGCTGGGCATTGAG+AGG | 0.541123 | tig0020557:+11031 | Msa1383000:intergenic |
| GTCACCTCCTTTGGATGAAG+GGG | 0.541178 | tig0020557:-11636 | Msa1383000:CDS |
| GTGAATCATCTAAGAAAGCA+TGG | 0.544384 | tig0020557:-12283 | Msa1383000:CDS |
| GGTTTAAACTTTGAGTACAT+AGG | 0.545160 | tig0020557:-10371 | Msa1383000:three_prime_UTR |
| GGGTGCTAGCAAAGAGAGCA+AGG | 0.546467 | tig0020557:-12891 | Msa1383000:CDS |
| TAATTGCAGCCAAGAGGCAA+AGG | 0.551496 | tig0020557:-10727 | Msa1383000:intron |
| TCAAACCCGGAAATCACAAT+CGG | 0.553682 | tig0020557:-10640 | Msa1383000:CDS |
| TGTAAAGTTCTTCGATGGCA+TGG | 0.555348 | tig0020557:-11468 | Msa1383000:intron |
| TGTTGTTGAAAATGAAGAAG+AGG | 0.557042 | tig0020557:-11675 | Msa1383000:CDS |
| CATGTTGCTACAGTCTGACT+CGG | 0.562250 | tig0020557:-12504 | Msa1383000:intron |
| ACGGCTGTTTCATTAGATGC+CGG | 0.562358 | tig0020557:+11232 | Msa1383000:intergenic |
| TAAATGATCTTCCAAAGCAA+GGG | 0.564834 | tig0020557:-10685 | Msa1383000:CDS |
| GAGAGTTCAATTGTACCAGT+TGG | 0.566913 | tig0020557:+11599 | Msa1383000:intergenic |
| CCTTCATCCAAAGGAGGTGA+CGG | 0.567401 | tig0020557:+11638 | Msa1383000:intergenic |
| CGGAATACACATTTCAAACC+CGG | 0.569195 | tig0020557:-10653 | Msa1383000:CDS |
| TTCGATGGCATGGATGATGA+TGG | 0.571056 | tig0020557:-11458 | Msa1383000:CDS |
| GAGTTCAATTGTACCAGTTG+GGG | 0.574661 | tig0020557:+11601 | Msa1383000:intergenic |
| GTAAGATGTCCAGAAACGAT+TGG | 0.574945 | tig0020557:+10250 | Msa1383000:intergenic |
| TAGGGAAGAAAATGGAGTGA+TGG | 0.575118 | tig0020557:-12858 | Msa1383000:CDS |
| CTTCATCCAAAGGAGGTGAC+GGG | 0.575720 | tig0020557:+11639 | Msa1383000:intergenic |
| TGGTACAATTGAACTCTCAC+AGG | 0.578719 | tig0020557:-11594 | Msa1383000:intron |
| GTTATGCTGAATCGTTGTAA+GGG | 0.581949 | tig0020557:-12989 | Msa1383000:CDS |
| GAGCAAGGTGGATTGCAGTA+GGG | 0.582197 | tig0020557:-12876 | Msa1383000:CDS |
| AGGCATCTTCGGCTCCACAT+TGG | 0.582725 | tig0020557:+11087 | Msa1383000:intergenic |
| AAAACAGTACTGTCCCTAAG+AGG | 0.584288 | tig0020557:-11054 | Msa1383000:CDS |
| AAGAAAGCCCCTTCATCCAA+AGG | 0.586587 | tig0020557:+11629 | Msa1383000:intergenic |
| TTCTAGTGGATGGAAAGAGC+TGG | 0.587363 | tig0020557:-11890 | Msa1383000:intron |
| CAAAGCAAGGGTCTGTCCAA+CGG | 0.592243 | tig0020557:-10673 | Msa1383000:CDS |
| TGGGATTGAAGATGAAGTCA+GGG | 0.594781 | tig0020557:-13156 | Msa1383000:intron |
| TCTAAGAAAGCATGGATCGA+AGG | 0.595986 | tig0020557:-12275 | Msa1383000:CDS |
| AATGAAGAAGAGGAAGAAGG+AGG | 0.597918 | tig0020557:-11665 | Msa1383000:CDS |
| GAAACATCGATTATTTCCCA+AGG | 0.598777 | tig0020557:-10392 | Msa1383000:three_prime_UTR |
| AAGAGAAGTTCTGTTAGAGA+GGG | 0.600208 | tig0020557:-12911 | Msa1383000:CDS |
| ACTCTCTGTCGATCTTCTGA+AGG | 0.600474 | tig0020557:-12444 | Msa1383000:intron |
| TTCTATGCTCTCAAGGAGGG+GGG | 0.604868 | tig0020557:+10485 | Msa1383000:intergenic |
| GACGATGTAAAGTTCTTCGA+TGG | 0.605011 | tig0020557:-11473 | Msa1383000:intron |
| AATTATTAATTGCAGCCAAG+AGG | 0.608124 | tig0020557:-10733 | Msa1383000:intron |
| GGAACAATCCAATTAAGCCA+TGG | 0.608967 | tig0020557:+10295 | Msa1383000:intergenic |
| CGACCAGTATCAGCCGCCAT+CGG | 0.609021 | tig0020557:+11145 | Msa1383000:intergenic |
| TCAACAACCACACCTGTCGC+AGG | 0.609609 | tig0020557:-11847 | Msa1383000:intron |
| TGAAACAGCCGTCACTGCCA+AGG | 0.610149 | tig0020557:-11221 | Msa1383000:CDS |
| GCAGTCAACTGAGATTGGAA+AGG | 0.610845 | tig0020557:-12308 | Msa1383000:intron |
| TGCTGTTTGAGTCTCTGAGG+AGG | 0.611179 | tig0020557:-12481 | Msa1383000:CDS |
| CATTCAGCGAAAAGCCAATG+TGG | 0.612860 | tig0020557:-11101 | Msa1383000:CDS |
| TCTCAATAACCGTGAAGATG+AGG | 0.613333 | tig0020557:-12729 | Msa1383000:intron |
| AATTCTACCTGCGACAGGTG+TGG | 0.614711 | tig0020557:+11840 | Msa1383000:intergenic |
| CAGGGTCACTTGATCAGTGG+AGG | 0.617583 | tig0020557:-13138 | Msa1383000:CDS |
| TTCAACAAGAACCGTGACAA+CGG | 0.624350 | tig0020557:-11298 | Msa1383000:CDS |
| GGAAAGAGCTGGTCAATGCG+TGG | 0.625905 | tig0020557:-11879 | Msa1383000:CDS |
| GTCCAAAGGAGTTTAAGTCT+AGG | 0.627009 | tig0020557:-13042 | Msa1383000:CDS |
| TCTGTGCCTGATGATGATAA+TGG | 0.629006 | tig0020557:-12947 | Msa1383000:CDS |
| CGGTGCTGTTTGAGTCTCTG+AGG | 0.632670 | tig0020557:-12484 | Msa1383000:CDS |
| GAAAGAGCTGGTCAATGCGT+GGG | 0.636719 | tig0020557:-11878 | Msa1383000:CDS |
| TCGTTGTAAGGGGTGTGAGA+AGG | 0.640457 | tig0020557:-12978 | Msa1383000:CDS |
| AAGCAGCAACAACAATTGCA+TGG | 0.641026 | tig0020557:+13071 | Msa1383000:intergenic |
| AGTCAGGGTCACTTGATCAG+TGG | 0.646882 | tig0020557:-13141 | Msa1383000:CDS |
| AGCTTCAGAAGAAGGCACAC+CGG | 0.647483 | tig0020557:-11714 | Msa1383000:CDS |
| CACATGAAAGAATTTACACA+AGG | 0.653834 | tig0020557:+10146 | Msa1383000:intergenic |
| GGTGAGGCCTAATAAACCGA+TGG | 0.659654 | tig0020557:-11161 | Msa1383000:CDS |
| TTATGCTGAATCGTTGTAAG+GGG | 0.662020 | tig0020557:-12988 | Msa1383000:CDS |
| GAGGCCTAATAAACCGATGG+CGG | 0.667726 | tig0020557:-11158 | Msa1383000:CDS |
| TTGGCACTCAAACTAAGGAG+AGG | 0.668123 | tig0020557:-11261 | Msa1383000:CDS |
| AAAGCCCCTTCATCCAAAGG+AGG | 0.683333 | tig0020557:+11632 | Msa1383000:intergenic |
| GGAAATCACAATCGGCAATG+GGG | 0.692012 | tig0020557:-10632 | Msa1383000:CDS |
| TGCTAGCAAAGAGAGCAAGG+TGG | 0.724881 | tig0020557:-12888 | Msa1383000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTAAATTTGATATTCT+GGG | + | tig0020557:10339-10358 | Msa1383000:intergenic | 10.0% |
| !! | TTAATTTAAATTTGATATTC+TGG | + | tig0020557:10340-10359 | Msa1383000:intergenic | 10.0% |
| !! | ATTGTTTATTATAACATATT+TGG | - | tig0020557:10550-10569 | Msa1383000:three_prime_UTR | 10.0% |
| !! | AATTTAAATTTGATATTCTG+GGG | + | tig0020557:10338-10357 | Msa1383000:intergenic | 15.0% |
| !!! | AGTATGATTTATTTTTTTCA+TGG | - | tig0020557:11543-11562 | Msa1383000:intron | 15.0% |
| !! | ATTACAAAATTAATTCATGT+TGG | - | tig0020557:12006-12025 | Msa1383000:intron | 15.0% |
| !!! | TTAAATTGATGATTGTAAAT+GGG | - | tig0020557:12410-12429 | Msa1383000:intron | 15.0% |
| !! | ATTTCTATTGACAATAATTA+TGG | + | tig0020557:13494-13513 | Msa1383000:intergenic | 15.0% |
| !!! | ATTGATTCTTTTGTTGTTTT+GGG | - | tig0020557:10590-10609 | Msa1383000:three_prime_UTR | 20.0% |
| !!! | TGTTTTGATATGGTTTTTTT+TGG | - | tig0020557:11166-11185 | Msa1383000:CDS | 20.0% |
| !!! | TGGTTTATTTTATACAATCA+TGG | - | tig0020557:11591-11610 | Msa1383000:intron | 20.0% |
| !! | AAAATGGTTCAAATTAACTA+AGG | + | tig0020557:11678-11697 | Msa1383000:intergenic | 20.0% |
| !! | GATATGAATCAAAACAATAA+CGG | + | tig0020557:11766-11785 | Msa1383000:intergenic | 20.0% |
| !!! | ATCTGTTAAATGTTTTCAAT+TGG | - | tig0020557:11808-11827 | Msa1383000:intron | 20.0% |
| !!! | TAATCTTTTCTAATTTCTAG+TGG | - | tig0020557:11861-11880 | Msa1383000:CDS | 20.0% |
| !! | TTGAAATATAAGTTTGAGAA+GGG | + | tig0020557:12219-12238 | Msa1383000:intergenic | 20.0% |
| !!! | TTTGAAATATAAGTTTGAGA+AGG | + | tig0020557:12220-12239 | Msa1383000:intergenic | 20.0% |
| !! | TTCTCAAACTTATATTTCAA+AGG | - | tig0020557:12219-12238 | Msa1383000:intron | 20.0% |
| !! | TGTATATATGAAACTGAATT+TGG | - | tig0020557:12243-12262 | Msa1383000:intron | 20.0% |
| !! | GTATATATGAAACTGAATTT+GGG | - | tig0020557:12244-12263 | Msa1383000:CDS | 20.0% |
| !!! | CTTAAATTGATGATTGTAAA+TGG | - | tig0020557:12409-12428 | Msa1383000:intron | 20.0% |
| !!! | TAAATTGATGATTGTAAATG+GGG | - | tig0020557:12411-12430 | Msa1383000:intron | 20.0% |
| !! | AAACTCTATTCAAGTAAAAA+TGG | + | tig0020557:13325-13344 | Msa1383000:intergenic | 20.0% |
| !!! | TTTTGTTTATCCAAGAATAT+TGG | - | tig0020557:13419-13438 | Msa1383000:intron | 20.0% |
| !! | AATTTCAAATCCAATATTCT+TGG | + | tig0020557:13432-13451 | Msa1383000:intergenic | 20.0% |
| !! | ACATTTATATTACTTGCATT+AGG | - | tig0020557:13545-13564 | Msa1383000:intron | 20.0% |
| !! | CATTTATATTACTTGCATTA+GGG | - | tig0020557:13546-13565 | Msa1383000:intron | 20.0% |
| !!! | AAGGTTATTTCTTCTTTTTG+AGG | - | tig0020557:10069-10088 | Msa1383000:three_prime_UTR | 25.0% |
| !!! | TTTCTTCTTTTTGAGGTTTT+TGG | - | tig0020557:10076-10095 | Msa1383000:three_prime_UTR | 25.0% |
| !! | TGTATTGTTTCACATTTTTC+TGG | + | tig0020557:10114-10133 | Msa1383000:intergenic | 25.0% |
| ! | AATTTGATTGGATCAATGTT+CGG | + | tig0020557:10300-10319 | Msa1383000:intergenic | 25.0% |
| !! | TCCAATCAAATTTTCCTAAA+TGG | - | tig0020557:10308-10327 | Msa1383000:three_prime_UTR | 25.0% |
| !! | CCAATCAAATTTTCCTAAAT+GGG | - | tig0020557:10309-10328 | Msa1383000:three_prime_UTR | 25.0% |
| !!! | TTTCGTCATTGTTTTATTCA+GGG | - | tig0020557:10446-10465 | Msa1383000:three_prime_UTR | 25.0% |
| !!! | AACTCAATTTTTTCTCACTT+GGG | + | tig0020557:10516-10535 | Msa1383000:intergenic | 25.0% |
| !!! | AAACTCAATTTTTTCTCACT+TGG | + | tig0020557:10517-10536 | Msa1383000:intergenic | 25.0% |
| !!! | AAAAATTGAGTTTTGAATCG+TGG | - | tig0020557:10524-10543 | Msa1383000:three_prime_UTR | 25.0% |
| !!! | AAAATTGAGTTTTGAATCGT+GGG | - | tig0020557:10525-10544 | Msa1383000:three_prime_UTR | 25.0% |
| !!! | GATTGATTCTTTTGTTGTTT+TGG | - | tig0020557:10589-10608 | Msa1383000:three_prime_UTR | 25.0% |
| !! | ATGTTTGATGTGATGATTTT+TGG | - | tig0020557:11135-11154 | Msa1383000:CDS | 25.0% |
| !!! | TTGATATGGTTTTTTTTGGA+TGG | - | tig0020557:11170-11189 | Msa1383000:CDS | 25.0% |
| !! | AACAATCTTAAAAAAAGCAC+TGG | + | tig0020557:11411-11430 | Msa1383000:intergenic | 25.0% |
| ! | TCACTATCATTACATAATCA+TGG | - | tig0020557:11638-11657 | Msa1383000:CDS | 25.0% |
| !!! | AGTTTAGAATTTGAGTTGTT+CGG | + | tig0020557:11837-11856 | Msa1383000:intergenic | 25.0% |
| !! | TTTTATCTACCTTATTAGTG+TGG | - | tig0020557:11948-11967 | Msa1383000:intron | 25.0% |
| !! | GCATTAATTTTGTAAGTTTG+TGG | - | tig0020557:12782-12801 | Msa1383000:CDS | 25.0% |
| !!! | CTTCTGAAACACAAAAATTA+AGG | + | tig0020557:12818-12837 | Msa1383000:intergenic | 25.0% |
| ! | TCTTCTATCCATTAAATGTT+TGG | + | tig0020557:13255-13274 | Msa1383000:intergenic | 25.0% |
| !!! | AGAGTTTATTTTGATTGTAG+AGG | - | tig0020557:13338-13357 | Msa1383000:intron | 25.0% |
| !!! | GAGTTTATTTTGATTGTAGA+GGG | - | tig0020557:13339-13358 | Msa1383000:intron | 25.0% |
| !! | TTTGAAATTTGATCCTATCT+TGG | - | tig0020557:13443-13462 | Msa1383000:intron | 25.0% |
| ! | TATGTAATAAGCAGGTTTAT+AGG | - | tig0020557:13644-13663 | Msa1383000:five_prime_UTR | 25.0% |
| !!! | GTGTTGTTTTCTTTTGTTTC+TGG | - | tig0020557:10188-10207 | Msa1383000:three_prime_UTR | 30.0% |
| !! | TTTTGGATTTGGAACAGATT+CGG | + | tig0020557:10233-10252 | Msa1383000:intergenic | 30.0% |
| !!! | TGATGATATGGTTTTGGATT+TGG | + | tig0020557:10244-10263 | Msa1383000:intergenic | 30.0% |
| !! | TGATGATGATGATATGGTTT+TGG | + | tig0020557:10250-10269 | Msa1383000:intergenic | 30.0% |
| ! | TGATGATGATGATGATGATA+TGG | + | tig0020557:10256-10275 | Msa1383000:intergenic | 30.0% |
| TCAATGTTCGGTAAGAAAAT+TGG | + | tig0020557:10288-10307 | Msa1383000:intergenic | 30.0% | |
| CCCATTTAGGAAAATTTGAT+TGG | + | tig0020557:10312-10331 | Msa1383000:intergenic | 30.0% | |
| TGACGAAAGAATGATCAAAA+GGG | + | tig0020557:10434-10453 | Msa1383000:intergenic | 30.0% | |
| ATGACGAAAGAATGATCAAA+AGG | + | tig0020557:10435-10454 | Msa1383000:intergenic | 30.0% | |
| !! | CTTTCGTCATTGTTTTATTC+AGG | - | tig0020557:10445-10464 | Msa1383000:three_prime_UTR | 30.0% |
| !! | AATTGGTTTGATTCTTCTTC+AGG | + | tig0020557:10485-10504 | Msa1383000:intergenic | 30.0% |
| TTACTTTCGTTCATCGAATT+CGG | - | tig0020557:10652-10671 | Msa1383000:CDS | 30.0% | |
| CAAAGCTGTAATTGCTAATA+GGG | + | tig0020557:10940-10959 | Msa1383000:intergenic | 30.0% | |
| AAGATTATACCTCATCTTCA+CGG | + | tig0020557:11048-11067 | Msa1383000:intergenic | 30.0% | |
| !! | TGATGTGATGATTTTTGGAA+AGG | - | tig0020557:11140-11159 | Msa1383000:CDS | 30.0% |
| !!! | GGAAAGGATATGTTTTGATA+TGG | - | tig0020557:11156-11175 | Msa1383000:CDS | 30.0% |
| !! | GCATTTTTGTTCTTGTTTGA+AGG | - | tig0020557:11192-11211 | Msa1383000:CDS | 30.0% |
| CACATGACTAACTAAGAAAA+TGG | + | tig0020557:11694-11713 | Msa1383000:intergenic | 30.0% | |
| ATTGACACCAAACTTTAGAT+AGG | - | tig0020557:11728-11747 | Msa1383000:intron | 30.0% | |
| ! | TCATTCACCTATCTAAAGTT+TGG | + | tig0020557:11738-11757 | Msa1383000:intergenic | 30.0% |
| !!! | CTTTTCTAATTTCTAGTGGA+TGG | - | tig0020557:11865-11884 | Msa1383000:CDS | 30.0% |
| TCATCAATACCACACTAATA+AGG | + | tig0020557:11960-11979 | Msa1383000:intergenic | 30.0% | |
| ATTGATGAGTACAATTATGC+TGG | - | tig0020557:11972-11991 | Msa1383000:intron | 30.0% | |
| ! | TCTTCATTTTCAACAACAGA+TGG | + | tig0020557:12088-12107 | Msa1383000:intergenic | 30.0% |
| TGTTGTTGAAAATGAAGAAG+AGG | - | tig0020557:12090-12109 | Msa1383000:intron | 30.0% | |
| ATAAGTTTGAGAAGGGAAAA+AGG | + | tig0020557:12212-12231 | Msa1383000:intergenic | 30.0% | |
| TTCCTTGTGTTGTATATATC+TGG | - | tig0020557:12270-12289 | Msa1383000:CDS | 30.0% | |
| ! | AATCATCAATTTAAGACGAG+GGG | + | tig0020557:12404-12423 | Msa1383000:intergenic | 30.0% |
| ! | CAATCATCAATTTAAGACGA+GGG | + | tig0020557:12405-12424 | Msa1383000:intergenic | 30.0% |
| ! | ACAATCATCAATTTAAGACG+AGG | + | tig0020557:12406-12425 | Msa1383000:intergenic | 30.0% |
| ! | TATTTTGCTTACATCTTGCT+GGG | + | tig0020557:12747-12766 | Msa1383000:intergenic | 30.0% |
| !! | TTATTTTGCTTACATCTTGC+TGG | + | tig0020557:12748-12767 | Msa1383000:intergenic | 30.0% |
| AGTTATCAACAAGCTGAAAA+TGG | - | tig0020557:12895-12914 | Msa1383000:CDS | 30.0% | |
| CATCAATGAGTTATGAATTG+AGG | + | tig0020557:13000-13019 | Msa1383000:intergenic | 30.0% | |
| AATTATTAATTGCAGCCAAG+AGG | - | tig0020557:13032-13051 | Msa1383000:CDS | 30.0% | |
| ATAAATGATCTTCCAAAGCA+AGG | - | tig0020557:13079-13098 | Msa1383000:CDS | 30.0% | |
| TAAATGATCTTCCAAAGCAA+GGG | - | tig0020557:13080-13099 | Msa1383000:CDS | 30.0% | |
| ! | AAGATAGAGCAACTATTTTC+AGG | - | tig0020557:13165-13184 | Msa1383000:intron | 30.0% |
| !!! | TGTTATTTTCTATGCTCTCA+AGG | + | tig0020557:13290-13309 | Msa1383000:intergenic | 30.0% |
| GTACTCAAAGTTTAAACCTT+GGG | + | tig0020557:13392-13411 | Msa1383000:intergenic | 30.0% | |
| TGTACTCAAAGTTTAAACCT+TGG | + | tig0020557:13393-13412 | Msa1383000:intergenic | 30.0% | |
| GGTTTAAACTTTGAGTACAT+AGG | - | tig0020557:13394-13413 | Msa1383000:intron | 30.0% | |
| CACATGAAAGAATTTACACA+AGG | + | tig0020557:13622-13641 | Msa1383000:intergenic | 30.0% | |
| CATGTGATTATGTAATAAGC+AGG | - | tig0020557:13636-13655 | Msa1383000:five_prime_UTR | 30.0% | |
| GTTTCCAAAATTCAATAGCT+TGG | - | tig0020557:13695-13714 | Msa1383000:five_prime_UTR | 30.0% | |
| ! | AACTCCAAGCTATTGAATTT+TGG | + | tig0020557:13702-13721 | Msa1383000:intergenic | 30.0% |
| TCACTTGGGTCATTGAAAAT+TGG | + | tig0020557:10502-10521 | Msa1383000:intergenic | 35.0% | |
| TGTTATGCTGAATCGTTGTA+AGG | - | tig0020557:10775-10794 | Msa1383000:intron | 35.0% | |
| GTTATGCTGAATCGTTGTAA+GGG | - | tig0020557:10776-10795 | Msa1383000:intron | 35.0% | |
| TTATGCTGAATCGTTGTAAG+GGG | - | tig0020557:10777-10796 | Msa1383000:intron | 35.0% | |
| TCATCACCATTATCATCATC+AGG | + | tig0020557:10827-10846 | Msa1383000:intergenic | 35.0% | |
| AAGAGAAGTTCTGTTAGAGA+GGG | - | tig0020557:10854-10873 | Msa1383000:intron | 35.0% | |
| CCAAAGCTGTAATTGCTAAT+AGG | + | tig0020557:10941-10960 | Msa1383000:intergenic | 35.0% | |
| CCTATTAGCAATTACAGCTT+TGG | - | tig0020557:10938-10957 | Msa1383000:intron | 35.0% | |
| ! | TGAATCTTTCTTTGTCGCTT+TGG | - | tig0020557:11351-11370 | Msa1383000:intron | 35.0% |
| !! | GAATCTTTCTTTGTCGCTTT+GGG | - | tig0020557:11352-11371 | Msa1383000:intron | 35.0% |
| !! | AATCTTTCTTTGTCGCTTTG+GGG | - | tig0020557:11353-11372 | Msa1383000:intron | 35.0% |
| AATTTGCAGTCAACTGAGAT+TGG | - | tig0020557:11452-11471 | Msa1383000:intron | 35.0% | |
| GTGAATCATCTAAGAAAGCA+TGG | - | tig0020557:11482-11501 | Msa1383000:intron | 35.0% | |
| TGTTTCTTGTCTGCAAATTG+TGG | - | tig0020557:11571-11590 | Msa1383000:intron | 35.0% | |
| ! | TGGTGTCAATGTTAACATCA+TGG | + | tig0020557:11718-11737 | Msa1383000:intergenic | 35.0% |
| CTTTAGATAGGTGAATGACT+TGG | - | tig0020557:11740-11759 | Msa1383000:intron | 35.0% | |
| TAAAAAATTCTACCTGCGAC+AGG | + | tig0020557:11933-11952 | Msa1383000:intergenic | 35.0% | |
| ATGTTTGTAGCTTCAGAAGA+AGG | - | tig0020557:12043-12062 | Msa1383000:intron | 35.0% | |
| ! | TTCAACAACAGATGGATTTC+TGG | + | tig0020557:12080-12099 | Msa1383000:intergenic | 35.0% |
| GAAAATGAAGAAGAGGAAGA+AGG | - | tig0020557:12097-12116 | Msa1383000:intron | 35.0% | |
| AGAGTTCAATTGTACCAGTT+GGG | + | tig0020557:12168-12187 | Msa1383000:intergenic | 35.0% | |
| GTCCAGATATATACAACACA+AGG | + | tig0020557:12275-12294 | Msa1383000:intergenic | 35.0% | |
| ! | AACTAAGGAGAGGAATTTTC+CGG | - | tig0020557:12514-12533 | Msa1383000:intron | 35.0% |
| ! | GTACTGTTTTCCATTTTCAG+AGG | + | tig0020557:12701-12720 | Msa1383000:intergenic | 35.0% |
| GCAAAGGACAATACAAGTAA+TGG | - | tig0020557:13054-13073 | Msa1383000:CDS | 35.0% | |
| ! | GTTTGAAATGTGTATTCCGT+TGG | + | tig0020557:13111-13130 | Msa1383000:intergenic | 35.0% |
| !! | ATAGAGCAACTATTTTCAGG+AGG | - | tig0020557:13168-13187 | Msa1383000:intron | 35.0% |
| !! | TAGAGCAACTATTTTCAGGA+GGG | - | tig0020557:13169-13188 | Msa1383000:intron | 35.0% |
| ! | AGCATGTTCTCTAAAGATGA+AGG | - | tig0020557:13206-13225 | Msa1383000:intron | 35.0% |
| TGCTTTCGCCAAACATTTAA+TGG | - | tig0020557:13244-13263 | Msa1383000:intron | 35.0% | |
| ! | ATTTTCTATGCTCTCAAGGA+GGG | + | tig0020557:13286-13305 | Msa1383000:intergenic | 35.0% |
| ! | TATTTTCTATGCTCTCAAGG+AGG | + | tig0020557:13287-13306 | Msa1383000:intergenic | 35.0% |
| ! | GAAACATCGATTATTTCCCA+AGG | - | tig0020557:13373-13392 | Msa1383000:intron | 35.0% |
| ATAGAAATCCCAATCGTTTC+TGG | - | tig0020557:13506-13525 | Msa1383000:intron | 35.0% | |
| TAAGATGTCCAGAAACGATT+GGG | + | tig0020557:13517-13536 | Msa1383000:intergenic | 35.0% | |
| !! | TATTCTGGGGTATCCCATTT+AGG | + | tig0020557:10325-10344 | Msa1383000:intergenic | 40.0% |
| TTGGGATTGAAGATGAAGTC+AGG | - | tig0020557:10608-10627 | Msa1383000:exon | 40.0% | |
| TGGGATTGAAGATGAAGTCA+GGG | - | tig0020557:10609-10628 | Msa1383000:exon | 40.0% | |
| AAGCAGCAACAACAATTGCA+TGG | + | tig0020557:10697-10716 | Msa1383000:intergenic | 40.0% | |
| GTCCAAAGGAGTTTAAGTCT+AGG | - | tig0020557:10723-10742 | Msa1383000:intron | 40.0% | |
| CTCCTAGACTTAAACTCCTT+TGG | + | tig0020557:10728-10747 | Msa1383000:intergenic | 40.0% | |
| GAGTTTAAGTCTAGGAGAGA+TGG | - | tig0020557:10731-10750 | Msa1383000:intron | 40.0% | |
| ! | TCTGTGCCTGATGATGATAA+TGG | - | tig0020557:10818-10837 | Msa1383000:intron | 40.0% |
| CAAGAGAAGTTCTGTTAGAG+AGG | - | tig0020557:10853-10872 | Msa1383000:intron | 40.0% | |
| GATTGCAGTAGGGAAGAAAA+TGG | - | tig0020557:10899-10918 | Msa1383000:CDS | 40.0% | |
| TAGGGAAGAAAATGGAGTGA+TGG | - | tig0020557:10907-10926 | Msa1383000:CDS | 40.0% | |
| TCTCAATAACCGTGAAGATG+AGG | - | tig0020557:11036-11055 | Msa1383000:CDS | 40.0% | |
| !! | ATCTTTCTTTGTCGCTTTGG+GGG | - | tig0020557:11354-11373 | Msa1383000:intron | 40.0% |
| ! | TCTAAGAAAGCATGGATCGA+AGG | - | tig0020557:11490-11509 | Msa1383000:intron | 40.0% |
| !! | ACAGATGGATTTCTGGAATC+CGG | + | tig0020557:12073-12092 | Msa1383000:intergenic | 40.0% |
| AATGAAGAAGAGGAAGAAGG+AGG | - | tig0020557:12100-12119 | Msa1383000:intron | 40.0% | |
| GAGTTCAATTGTACCAGTTG+GGG | + | tig0020557:12167-12186 | Msa1383000:intergenic | 40.0% | |
| GAGAGTTCAATTGTACCAGT+TGG | + | tig0020557:12169-12188 | Msa1383000:intergenic | 40.0% | |
| TGGTACAATTGAACTCTCAC+AGG | - | tig0020557:12171-12190 | Msa1383000:intron | 40.0% | |
| GACGATGTAAAGTTCTTCGA+TGG | - | tig0020557:12292-12311 | Msa1383000:CDS | 40.0% | |
| TGTAAAGTTCTTCGATGGCA+TGG | - | tig0020557:12297-12316 | Msa1383000:CDS | 40.0% | |
| ! | CTACCTAGCTTTCGTTGTTA+CGG | - | tig0020557:12363-12382 | Msa1383000:intron | 40.0% |
| TTGTCACGGTTCTTGTTGAA+TGG | + | tig0020557:12467-12486 | Msa1383000:intergenic | 40.0% | |
| TTCAACAAGAACCGTGACAA+CGG | - | tig0020557:12467-12486 | Msa1383000:CDS | 40.0% | |
| TCAGCACATGAAGAAAAACG+AGG | - | tig0020557:12577-12596 | Msa1383000:intron | 40.0% | |
| ! | CGCTGAATGTTTGAGTTTAG+TGG | + | tig0020557:12653-12672 | Msa1383000:intergenic | 40.0% |
| !!! | TCCATTTTCAGAGGCATCTT+CGG | + | tig0020557:12692-12711 | Msa1383000:intergenic | 40.0% |
| AAAACAGTACTGTCCCTAAG+AGG | - | tig0020557:12711-12730 | Msa1383000:intron | 40.0% | |
| GTCCAAGTGTTCAGATGATT+CGG | - | tig0020557:12837-12856 | Msa1383000:CDS | 40.0% | |
| TTGTATTGTCCTTTGCCTCT+TGG | + | tig0020557:13050-13069 | Msa1383000:intergenic | 40.0% | |
| CGGAATACACATTTCAAACC+CGG | - | tig0020557:13112-13131 | Msa1383000:CDS | 40.0% | |
| TCAAACCCGGAAATCACAAT+CGG | - | tig0020557:13125-13144 | Msa1383000:CDS | 40.0% | |
| ! | TTTTCTATGCTCTCAAGGAG+GGG | + | tig0020557:13285-13304 | Msa1383000:intergenic | 40.0% |
| TTGGAGTTCCATGGCTTAAT+TGG | - | tig0020557:13462-13481 | Msa1383000:intron | 40.0% | |
| GGAACAATCCAATTAAGCCA+TGG | + | tig0020557:13473-13492 | Msa1383000:intergenic | 40.0% | |
| GTAAGATGTCCAGAAACGAT+TGG | + | tig0020557:13518-13537 | Msa1383000:intergenic | 40.0% | |
| ! | TGCTGCTTCTGATTGTCCAA+AGG | - | tig0020557:10709-10728 | Msa1383000:CDS | 45.0% |
| !!! | AACTTGCTGCTGAGGTTTTG+AGG | - | tig0020557:11002-11021 | Msa1383000:intron | 45.0% |
| CATGTTGCTACAGTCTGACT+CGG | - | tig0020557:11261-11280 | Msa1383000:CDS | 45.0% | |
| ACTCTCTGTCGATCTTCTGA+AGG | - | tig0020557:11321-11340 | Msa1383000:CDS | 45.0% | |
| GCAGTCAACTGAGATTGGAA+AGG | - | tig0020557:11457-11476 | Msa1383000:CDS | 45.0% | |
| TGAGAGTTCGTGCTAGTTGA+CGG | + | tig0020557:11520-11539 | Msa1383000:intergenic | 45.0% | |
| ! | TTCTAGTGGATGGAAAGAGC+TGG | - | tig0020557:11875-11894 | Msa1383000:CDS | 45.0% |
| AAGAAAGCCCCTTCATCCAA+AGG | + | tig0020557:12139-12158 | Msa1383000:intergenic | 45.0% | |
| TTCGATGGCATGGATGATGA+TGG | - | tig0020557:12307-12326 | Msa1383000:CDS | 45.0% | |
| GAACCGTAACAACGAAAGCT+AGG | + | tig0020557:12369-12388 | Msa1383000:intergenic | 45.0% | |
| CTGTCTTTCTTCCGTTGTCA+CGG | + | tig0020557:12481-12500 | Msa1383000:intergenic | 45.0% | |
| AACGGAAGAAAGACAGCTCT+TGG | - | tig0020557:12485-12504 | Msa1383000:CDS | 45.0% | |
| AGCTCTTGGCACTCAAACTA+AGG | - | tig0020557:12499-12518 | Msa1383000:intron | 45.0% | |
| TTGGCACTCAAACTAAGGAG+AGG | - | tig0020557:12504-12523 | Msa1383000:intron | 45.0% | |
| ! | ACGGCTGTTTCATTAGATGC+CGG | + | tig0020557:12536-12555 | Msa1383000:intergenic | 45.0% |
| ! | TTTGTTGTCCTTGGCAGTGA+CGG | + | tig0020557:12555-12574 | Msa1383000:intergenic | 45.0% |
| !!! | GTGCTGACTTTTGTTGTCCT+TGG | + | tig0020557:12564-12583 | Msa1383000:intergenic | 45.0% |
| CATGAAGAAAAACGAGGCTG+TGG | - | tig0020557:12583-12602 | Msa1383000:intron | 45.0% | |
| CATTCAGCGAAAAGCCAATG+TGG | - | tig0020557:12664-12683 | Msa1383000:intron | 45.0% | |
| AGCCGAATCATCTGAACACT+TGG | + | tig0020557:12842-12861 | Msa1383000:intergenic | 45.0% | |
| CTCTTGAAGTCTTCGCTTAG+TGG | + | tig0020557:12875-12894 | Msa1383000:intergenic | 45.0% | |
| TAATTGCAGCCAAGAGGCAA+AGG | - | tig0020557:13038-13057 | Msa1383000:CDS | 45.0% | |
| ! | CATTGCCGATTGTGATTTCC+GGG | + | tig0020557:13133-13152 | Msa1383000:intergenic | 45.0% |
| ! | CCATTGCCGATTGTGATTTC+CGG | + | tig0020557:13134-13153 | Msa1383000:intergenic | 45.0% |
| CGGAAATCACAATCGGCAAT+GGG | - | tig0020557:13132-13151 | Msa1383000:CDS | 45.0% | |
| GGAAATCACAATCGGCAATG+GGG | - | tig0020557:13133-13152 | Msa1383000:CDS | 45.0% | |
| TTTCTATGCTCTCAAGGAGG+GGG | + | tig0020557:13284-13303 | Msa1383000:intergenic | 45.0% | |
| GATCCTATCTTGGAGTTCCA+TGG | - | tig0020557:13453-13472 | Msa1383000:intron | 45.0% | |
| AAGCCATGGAACTCCAAGAT+AGG | + | tig0020557:13459-13478 | Msa1383000:intergenic | 45.0% | |
| AGTCAGGGTCACTTGATCAG+TGG | - | tig0020557:10624-10643 | Msa1383000:CDS | 50.0% | |
| ! | TCGTTGTAAGGGGTGTGAGA+AGG | - | tig0020557:10787-10806 | Msa1383000:intron | 50.0% |
| TGCTAGCAAAGAGAGCAAGG+TGG | - | tig0020557:10877-10896 | Msa1383000:CDS | 50.0% | |
| !! | AGAGCAAGGTGGATTGCAGT+AGG | - | tig0020557:10888-10907 | Msa1383000:CDS | 50.0% |
| !! | GAGCAAGGTGGATTGCAGTA+GGG | - | tig0020557:10889-10908 | Msa1383000:CDS | 50.0% |
| !! | GCAATCACAACTTGCTGCTG+AGG | - | tig0020557:10994-11013 | Msa1383000:intron | 50.0% |
| ! | TGCTGTTTGAGTCTCTGAGG+AGG | - | tig0020557:11284-11303 | Msa1383000:CDS | 50.0% |
| GAAAGAGCTGGTCAATGCGT+GGG | - | tig0020557:11887-11906 | Msa1383000:CDS | 50.0% | |
| AATTCTACCTGCGACAGGTG+TGG | + | tig0020557:11928-11947 | Msa1383000:intergenic | 50.0% | |
| ! | AGCTTCAGAAGAAGGCACAC+CGG | - | tig0020557:12051-12070 | Msa1383000:intron | 50.0% |
| CTTCATCCAAAGGAGGTGAC+GGG | + | tig0020557:12129-12148 | Msa1383000:intergenic | 50.0% | |
| CCTTCATCCAAAGGAGGTGA+CGG | + | tig0020557:12130-12149 | Msa1383000:intergenic | 50.0% | |
| CGTCACCTCCTTTGGATGAA+GGG | - | tig0020557:12128-12147 | Msa1383000:intron | 50.0% | |
| GTCACCTCCTTTGGATGAAG+GGG | - | tig0020557:12129-12148 | Msa1383000:intron | 50.0% | |
| AAAGCCCCTTCATCCAAAGG+AGG | + | tig0020557:12136-12155 | Msa1383000:intergenic | 50.0% | |
| GCTTTCTTTGTTGCCCCAAC+TGG | - | tig0020557:12151-12170 | Msa1383000:intron | 50.0% | |
| AGAAAAACGAGGCTGTGGTG+AGG | - | tig0020557:12588-12607 | Msa1383000:intron | 50.0% | |
| GGTGAGGCCTAATAAACCGA+TGG | - | tig0020557:12604-12623 | Msa1383000:intron | 50.0% | |
| GAGGCCTAATAAACCGATGG+CGG | - | tig0020557:12607-12626 | Msa1383000:intron | 50.0% | |
| !! | TCAGCCGCCATCGGTTTATT+AGG | + | tig0020557:12614-12633 | Msa1383000:intergenic | 50.0% |
| ! | GCCGAAGATGCCTCTGAAAA+TGG | - | tig0020557:12688-12707 | Msa1383000:intron | 50.0% |
| !! | ACATCTTGCTGGGCATTGAG+AGG | + | tig0020557:12737-12756 | Msa1383000:intergenic | 50.0% |
| CAAAGCAAGGGTCTGTCCAA+CGG | - | tig0020557:13092-13111 | Msa1383000:CDS | 50.0% | |
| CCGGAAATCACAATCGGCAA+TGG | - | tig0020557:13131-13150 | Msa1383000:CDS | 50.0% | |
| TTCTATGCTCTCAAGGAGGG+GGG | + | tig0020557:13283-13302 | Msa1383000:intergenic | 50.0% | |
| CAGGGTCACTTGATCAGTGG+AGG | - | tig0020557:10627-10646 | Msa1383000:CDS | 55.0% | |
| GGGTGCTAGCAAAGAGAGCA+AGG | - | tig0020557:10874-10893 | Msa1383000:CDS | 55.0% | |
| !! | CGGTGCTGTTTGAGTCTCTG+AGG | - | tig0020557:11281-11300 | Msa1383000:CDS | 55.0% |
| GGAAAGAGCTGGTCAATGCG+TGG | - | tig0020557:11886-11905 | Msa1383000:CDS | 55.0% | |
| TCAACAACCACACCTGTCGC+AGG | - | tig0020557:11918-11937 | Msa1383000:intron | 55.0% | |
| CCGTCACCTCCTTTGGATGA+AGG | - | tig0020557:12127-12146 | Msa1383000:intron | 55.0% | |
| TGAAACAGCCGTCACTGCCA+AGG | - | tig0020557:12544-12563 | Msa1383000:intron | 55.0% | |
| ! | AAACCGATGGCGGCTGATAC+TGG | - | tig0020557:12617-12636 | Msa1383000:intron | 55.0% |
| AGGCATCTTCGGCTCCACAT+TGG | + | tig0020557:12681-12700 | Msa1383000:intergenic | 55.0% | |
| !! | GGGCATTGAGAGGCCTCTTA+GGG | + | tig0020557:12727-12746 | Msa1383000:intergenic | 55.0% |
| !! | TGGGCATTGAGAGGCCTCTT+AGG | + | tig0020557:12728-12747 | Msa1383000:intergenic | 55.0% |
| CGTTGGACAGACCCTTGCTT+TGG | + | tig0020557:13094-13113 | Msa1383000:intergenic | 55.0% | |
| CACAATCGGCAATGGGGCAA+CGG | - | tig0020557:13139-13158 | Msa1383000:CDS | 55.0% | |
| GCTGGTCAATGCGTGGGTGA+AGG | - | tig0020557:11893-11912 | Msa1383000:intron | 60.0% | |
| AGGACTCCCGTCACCTCCTT+TGG | - | tig0020557:12120-12139 | Msa1383000:intron | 60.0% | |
| CGACCAGTATCAGCCGCCAT+CGG | + | tig0020557:12623-12642 | Msa1383000:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020557 | gene | 10065 | 13722 | 10065 | ID=Msa1383000;Name=Msa1383000 |
| tig0020557 | mRNA | 10065 | 13722 | 10065 | ID=Msa1383000-mRNA-1;Parent=Msa1383000;Name=Msa1383000-mRNA-1;_AED=0.18;_eAED=0.18;_QI=134|1|1|1|0.9|0.90|11|551|446 |
| tig0020557 | exon | 10065 | 10740 | 10065 | ID=Msa1383000-mRNA-1:exon:8425;Parent=Msa1383000-mRNA-1 |
| tig0020557 | exon | 10871 | 10952 | 10871 | ID=Msa1383000-mRNA-1:exon:8424;Parent=Msa1383000-mRNA-1 |
| tig0020557 | exon | 11033 | 11340 | 11033 | ID=Msa1383000-mRNA-1:exon:8423;Parent=Msa1383000-mRNA-1 |
| tig0020557 | exon | 11456 | 11483 | 11456 | ID=Msa1383000-mRNA-1:exon:8422;Parent=Msa1383000-mRNA-1 |
| tig0020557 | exon | 11595 | 11734 | 11595 | ID=Msa1383000-mRNA-1:exon:8421;Parent=Msa1383000-mRNA-1 |
| tig0020557 | exon | 11848 | 11906 | 11848 | ID=Msa1383000-mRNA-1:exon:8420;Parent=Msa1383000-mRNA-1 |
| tig0020557 | exon | 12244 | 12326 | 12244 | ID=Msa1383000-mRNA-1:exon:8419;Parent=Msa1383000-mRNA-1 |
| tig0020557 | exon | 12445 | 12513 | 12445 | ID=Msa1383000-mRNA-1:exon:8418;Parent=Msa1383000-mRNA-1 |
| tig0020557 | exon | 12730 | 13167 | 12730 | ID=Msa1383000-mRNA-1:exon:8417;Parent=Msa1383000-mRNA-1 |
| tig0020557 | exon | 13270 | 13320 | 13270 | ID=Msa1383000-mRNA-1:exon:8416;Parent=Msa1383000-mRNA-1 |
| tig0020557 | exon | 13631 | 13722 | 13631 | ID=Msa1383000-mRNA-1:exon:8415;Parent=Msa1383000-mRNA-1 |
| tig0020557 | five_prime_UTR | 13631 | 13722 | 13631 | ID=Msa1383000-mRNA-1:five_prime_utr;Parent=Msa1383000-mRNA-1 |
| tig0020557 | five_prime_UTR | 13279 | 13320 | 13279 | ID=Msa1383000-mRNA-1:five_prime_utr;Parent=Msa1383000-mRNA-1 |
| tig0020557 | CDS | 13270 | 13278 | 13270 | ID=Msa1383000-mRNA-1:cds;Parent=Msa1383000-mRNA-1 |
| tig0020557 | CDS | 12730 | 13167 | 12730 | ID=Msa1383000-mRNA-1:cds;Parent=Msa1383000-mRNA-1 |
| tig0020557 | CDS | 12445 | 12513 | 12445 | ID=Msa1383000-mRNA-1:cds;Parent=Msa1383000-mRNA-1 |
| tig0020557 | CDS | 12244 | 12326 | 12244 | ID=Msa1383000-mRNA-1:cds;Parent=Msa1383000-mRNA-1 |
| tig0020557 | CDS | 11848 | 11906 | 11848 | ID=Msa1383000-mRNA-1:cds;Parent=Msa1383000-mRNA-1 |
| tig0020557 | CDS | 11595 | 11734 | 11595 | ID=Msa1383000-mRNA-1:cds;Parent=Msa1383000-mRNA-1 |
| tig0020557 | CDS | 11456 | 11483 | 11456 | ID=Msa1383000-mRNA-1:cds;Parent=Msa1383000-mRNA-1 |
| tig0020557 | CDS | 11033 | 11340 | 11033 | ID=Msa1383000-mRNA-1:cds;Parent=Msa1383000-mRNA-1 |
| tig0020557 | CDS | 10871 | 10952 | 10871 | ID=Msa1383000-mRNA-1:cds;Parent=Msa1383000-mRNA-1 |
| tig0020557 | CDS | 10616 | 10740 | 10616 | ID=Msa1383000-mRNA-1:cds;Parent=Msa1383000-mRNA-1 |
| tig0020557 | three_prime_UTR | 10065 | 10615 | 10065 | ID=Msa1383000-mRNA-1:three_prime_utr;Parent=Msa1383000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
